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My Links .ATasteOfTWiki view a short introductory presentation on TWiki for beginners .WelcomeGuest starting points on TWiki .TWikiUsersGuide ...

List of ZIB users Below is a list of users with accounts. If you want to edit topics or see protected areas of the site then you can get added to the list by registering ...

Welcome to Alibaba and the Forty Robbers General Information System Overview Hardware Contact / How to get an Account Login Module ...

Programming Environment: ProgrammingOverview Compiler Debugger Cluster Toolkit HansHermannFrese 28 Jan 2010

TWiki Administrator Group Member list: Set GROUP StefanWollny, BerndKallies, HinnerkStueben, ThomasSteinke, KathrinPeter, HansHermannFrese Persons ...

My Links .ATasteOfTWiki view a short introductory presentation on TWiki for beginners .WelcomeGuest starting points on TWiki .TWikiUsersGuide ...

Site level preferences are located in .TWikiPreferences , however this .TWikiPreferences prefs topic has override priority and should be used for local customisations ...

Web Preferences Settings Set ALLOWWEBCHANGE .TWikiAdminGroup, TWikiRegistrationAgent

D Grid Ressource Der Alibaba Cluster am Konrad Zuse Zentrum für Informationstechnik steht im Rahmen des D Grid Verbunds zur Verfügung. Highlights Spitzenleistung ...

Advance Reservations Advance reservations provide a higher guarantee that resources are available when they are needed. Cluster resources may be reserved through command ...

My Links .ATasteOfTWiki view a short introductory presentation on TWiki for beginners .WelcomeGuest starting points on TWiki .TWikiUsersGuide ...

Interactive and Batch Jobs Interactive Usage (Examples) Batch Jobs Advance Reservations StefanWollny 18 Sep 2007

Contact / How to get an account The cluster is open to members of the Activity. You should be able to access these resources just by using your certificate and a ...

File Systems /home The home directories are located in /home/ yourname . /home is an NFS mount to a 2 TByte Raid 5 SAN. /home is backed up and mounted on all ...

Stefan Wollny My Personal Data First Name Stefan Last Name Wollny Organisation Name ZIB Organisation URL http://www.zib.de Profession Computer Scientist ...

Batch Jobs commands: qsub, qstat, qdel Within the alibaba cluster, the batch queing system torque is used. torque an open source resource manager providing control ...

System Overview After the extension, the Alibaba cluster now is a Linux cluster from Dell with 480 cores in 80 workernodes (Intel Xeon CPUs), a parallel lustre filesystem ...

Programming Overview Before one can start, programming environment variables have to set appropriately. This can be done conveniently with the Modules Package (see ...

General Information Programming Environment Interactive and Batch Jobs File Systems Software and Libraries Further ...

My Links .ATasteOfTWiki view a short introductory presentation on TWiki for beginners .WelcomeGuest starting points on TWiki .TWikiUsersGuide ...

Interactive Usage (Examples) The primary usage mode is batch . The primary usage mode is batch . The primary usage mode is batch . Please restrict interactive usage ...

Hardware General Description Total number of cores in worker nodes 480 Total size of memory in worker nodes 960 GByte main memory Access Doubled gigabit ...

Compilers The following compilers are available on the system : Intel(R) C/C Compiler Intel(R) Fortran Compiler GNU gcc suite (C/C and Fortran) ...

My Links .ATasteOfTWiki view a short introductory presentation on TWiki for beginners .WelcomeGuest starting points on TWiki .TWikiUsersGuide ...

My Links .ATasteOfTWiki view a short introductory presentation on TWiki for beginners .WelcomeGuest starting points on TWiki .TWikiUsersGuide ...

Gaussian 03 A connected system of programs for performing a variety of semiempirical and ab initio molecular orbital calculations. Introduction Gaussian 03 is the ...

Software / Libraries Libraries Gaussian 03 Electronic Structure Programs NAMD Scalable Molecular Dynamics StefanWollny 18 Sep 2007 BerndKallies ...

My Links .ATasteOfTWiki view a short introductory presentation on TWiki for beginners .WelcomeGuest starting points on TWiki .TWikiUsersGuide ...

NAMD Scalable Molecular Dynamics Introduction NAMD is a parallel molecular dynamics code designed for high performance simulation of large biomolecular systems. The ...

Libraries: Intel(R) Math Kernel Library (MKL) 9.0 for Linux Usage example Makefile: MKL INCLUDE PATH /opt/intel/mkl/9.0/include MKL LIBRARY PATH /opt/intel/mkl ...

Module Package Overview A lot of software needed for cluster computing should already be installed. The modules concept should allow to work with different environments ...

Alibaba Cluster User Documenation All Information (for printout) StefanWollny 20 Sep 2007

Password Protected Manuals Unfortunately, the following manuals can be shown only to authenticated cluster users for legal reasons: Please type "showdocpw" at your ...

General Information System Overview Hardware User Access / How to get an Account Login Module Package Further Reading ...

Customise this topic; samples and ideas available at TWiki:TWiki.WebLeftBarCookbook. My links: My home page My activities edit

Login ssh The standard login server of the cluster is alibaba.zib.de which is running Suse Linux Enterprise. Any other machine within the cluster is not accessible ...

FAQ 1. Who can use the cluster ? Please see HowToGetAnAccount . 2. How do I start an MPI program on the cluster ? Is MPI already installed ? ...

Debuggers Intel(R) Debugger (IDB) 10.0 for Linux (see http://www.zib.de/cluster usr/twiki/pub/pdoc/intel/idb/10.0.023/Doc Index.htm ) Intel(R) Debugger ...

Further Reading !ParaStation MPI documentation Overall: http://www.cluster competence center.com Userguide: http://www.cluster competence ...

Legal Notice: If you are using the alibaba cluster (hard or software) at ZIB or any service that is resulting from using the cluster, you have to agree to the following ...

Simple Use Case The following is a very short and fictitious usage example. Note: This guide assumes you have an account on the system (otherwise see How to get ...

The Quickstart Guide for using the cluster Note: This guide assumes you have an account on the system (otherwise see How to get an account first). Login to ...

Documentation StefanWollny 18 Sep 2007

Support and Troubleshooting If needed, further informations, solutions to known problems etc. will be presented here. At the moment, if you have any problems or questions ...

My Links .ATasteOfTWiki view a short introductory presentation on TWiki for beginners .WelcomeGuest starting points on TWiki .TWikiUsersGuide ...

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