Dr. Daniel Baum - Staff
Zuse Institute Berlin (ZIB)
Numerical Mathematics
Department Visualization and Data Analysis
Takustr. 7
D-14195 Berlin-Dahlem
Germany
Email: baum
zib.de
Phone: +49 30 84185-293
Fax: +49 30 84185-107
Room: 4001
Numerical Mathematics
Department Visualization and Data Analysis
Takustr. 7
D-14195 Berlin-Dahlem
Germany
Email: baum
zib.dePhone: +49 30 84185-293
Fax: +49 30 84185-107
Room: 4001
Publications
2013 |
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| Ulrike Homberg, Daniel Baum, Alexander Wiebel, Steffen Prohaska, Hans-Christian Hege | Definition, Extraction, and Validation of Pore Structures in Porous Material | Topological Methods in Data Analysis and Visualization III, 2013 | BibTex | RIS |
| Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege | Exploration of cavity dynamics in biomolecular systems | BMC Bioinformatics (accepted for publication), 2013 | BibTex | RIS |
2012 |
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| Britta Weber, Garrett Greenan, Steffen Prohaska, Daniel Baum, Hans-Christian Hege, Thomas Müller-Reichert, Anthony A. Hyman, Jean-Marc Verbavatz | Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryos | Journal of Structural Biology, Vol. 178, No. 2, pp. 129 - 138, 2012 | DOI BibTex | RIS |
| Ulrike Homberg, Daniel Baum, Steffen Prohaska, Ute Kalbe, Karl Josef Witt | Automatic Extraction and Analysis of Realistic Pore Structures from µCT Data for Pore Space Characterization of Graded Soil | Proceedings of the 6th International Conference on Scour and Erosion (ICSE-6) (accepted for publication), pp. 66-73, 2012 | BibTex | RIS |
| Marco Klindt, Steffen Prohaska, Daniel Baum, Hans-Christian Hege | Conveying Archaeological Contexts to Museum Visitors: Case Study Pergamon Exhibition | VAST12: The 13th International Symposium on Virtual Reality, Archaeology and Intelligent Cultural Heritage - Short Papers, David Arnold, Jaime Kaminski, Franco Niccolucci, Andre Stork (Eds.), pp. 25-28, Eurographics Association: Brighton, UK, 2012 | DOI BibTex | RIS |
| Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege | Dynamic Channels in Biomolecular Systems: Path Analysis and Visualization | Proceedings of IEEE Symposium on Biological Data Visualization (biovis'12), pp. 99-106, 2012 | BibTex | RIS |
| Norbert Lindow, Daniel Baum, Hans-Christian Hege | Interactive Rendering of Materials and Biological Structures on Atomic and Nanoscopic Scale | Computer Graphics Forum, Vol. 31, No. 3, pp. 1325-1334, 2012 | DOI BibTex | RIS |
| Norbert Lindow, Daniel Baum, Hans-Christian Hege | Perceptually Linear Parameter Variations | Computer Graphics Forum, Vol. 31, No. 2, pp. 535-544, 2012 | DOI BibTex | RIS |
| Marco Klindt, Daniel Baum, Steffen Prohaska, Hans-Christian Hege | iCon.text – a customizable iPad app for kiosk applications in museum exhibitions | EVA 2012 Berlin, nov, pp. 150-155, Gesellschaft zur Förderung angewandter Informatik e.V.: Volmerstraße 3, 12489 Berlin, 2012 | PDF (Preprint) BibTex | RIS |
2011 |
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| Alexander Rigort, David Günther, Reiner Hegerl, Daniel Baum, Britta Weber, Steffen Prohaska, Ohad Medalia, Wolfgang Baumeister, Hans-Christian Hege | Automated segmentation of electron tomograms for a quantitative description of actin filament networks | Journal of Structural Biology, Vol. 177, pp. 135-144, 2011 | DOI BibTex | RIS |
| Ulrike Homberg, Daniel Baum, Steffen Prohaska | Describing and Analyzing the Dual Structures of Porous Media | Proc. 3D-Microstructure Meeting, F. Mücklich, P. Slussallek, K. Schladitz (Eds.), pp. 24-25, 2011 | BibTex | RIS |
| Britta Weber, Marit Möller, Jean-Marc Verbavatz, Daniel Baum, Hans-Christian Hege, Steffen Prohaska | Fast Tracing of Microtubule Centerlines in Electron Tomograms | BioVis 2011 Abstracts, 1st IEEE Symposium on Biological Data Visualization, Oct., 2011 | PDF BibTex | RIS |
| Norbert Lindow, Daniel Baum, Hans-Christian Hege | Voronoi-Based Extraction and Visualization of Molecular Paths | IEEE Transactions on Visualization and Computer Graphics, Vol. 17, No. 12, pp. 2025-2034, 2011 | BibTex | RIS |
2010 |
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| Norbert Lindow, Daniel Baum, Steffen Prohaska, Hans-Christian Hege | Accelerated Visualization of Dynamic Molecular Surfaces | Comput. Graph. Forum, Vol. 29, pp. 943-952, 2010 | DOI BibTex | RIS |
2007 |
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| Daniel Baum | A Point-Based Algorithm for Multiple 3D Surface Alignment of Drug-Sized Molecules | Doctoral thesis, Berlin, Freie Universität, 2007 | PDF BibTex | RIS |
2006 |
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| Daniel Baum, Hans-Christian Hege | A Point-matching based algorithm for 3D surface alignment of drug-sized molecules | Computational Life Sciences II, Second International Symposium, CompLife 2006, Cambridge (UK), Sept. 2006, Lecture Notes in Bioinformatics, M.R. Berthold, R. Glen, I. Fischer (Eds.), Vol. 4216, pp. 183-193, Springer, 2006 | PDF DOI BibTex | RIS |
2005 |
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| Daniel Baum | Multiple semi-flexible 3D superposition of drug-sized molecules | Computational Life Sciences: First International Symposium, CompLife 2005, Lecture Notes on Computer Science, Vol. 3695, pp. 198-207, Springer: Konstanz, Germany, 2005 | PDF (Preprint) DOI BibTex | RIS |
2003 |
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| Daniel Baum | Finding All Maximal Cliques of a Family of Induced Subgraphs | ZIB-Report 03-53 | PDF BibTex | RIS |
2002 |
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| Johannes Schmidt-Ehrenberg, Daniel Baum, Hans-Christian Hege | Visualizing Dynamic Molecular Conformations | Proceedings of IEEE Visualization 2002, Oct./Nov., Robert J. Moorhead, Markus Gross, Kenneth I. Joy (Eds.), pp. 235-242, IEEE Computer Society Press: Boston MA, USA, 2002 | PDF DOI BibTex | RIS |
2001 |
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| Johannes Schmidt-Ehrenberg, Daniel Baum, Hans-Christian Hege | Visually stunning - Molecular conformations | The Biochemist, Vol. 23, No. 5, pp. 22-26, 2001 | BibTex | RIS |