Vincent Jasper Dercksen - Staff
Zuse Institute Berlin (ZIB)
Numerical Mathematics
Department Visualization and Data Analysis
Takustr. 7
D-14195 Berlin-Dahlem
Germany
Email: dercksen
zib.de
Phone: +49 30 84185-299
Fax: +49 30 84185-107
Room: 4012
Numerical Mathematics
Department Visualization and Data Analysis
Takustr. 7
D-14195 Berlin-Dahlem
Germany
Email: dercksen
zib.dePhone: +49 30 84185-299
Fax: +49 30 84185-107
Room: 4012
Publications
2012 |
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| Marcel Oberlaender, Christiaan P. J. de Kock, Randy M. Bruno, Alejandro Ramirez, Hanno S. Meyer, Vincent J. Dercksen, Moritz Helmstaedter, Bert Sakmann | Cell Type-Specific Three-Dimensional Structure of Thalamocortical Circuits in a Column of Rat Vibrissal Cortex | Cerebral Cortex, Vol. 22, No. 10, pp. 2375-2391, 2012 | DOI BibTex | RIS |
| Vincent Jasper Dercksen, Marcel Oberlaender, Bert Sakmann, Hans-Christian Hege | Interactive Visualization – a Key Prerequisite for Reconstruction of Anatomically Realistic Neural Networks | Visualization in Medicine and Life Sciences II, L. Linsen, H. Hagen, B. Hamann, H.-C. Hege (Eds.), pp. 27-44, Springer, Berlin, 2012 | PDF BibTex | RIS |
| Vincent J. Dercksen, Robert Egger, Hans-Christian Hege, Marcel Oberlaender | Synaptic Connectivity in Anatomically Realistic Neural Networks: Modeling and Visual Analysis | Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), Norrköping, Sweden, pp. 17-24, 2012 | PDF DOI BibTex | RIS |
| Hanspeter Pfister, Verena Kaynig, Charl P. Botha, Stefan Bruckner, Vincent J. Dercksen, Hans-Christian Hege, Jos B. T. M. Roerdink | Visualization in Connectomics | Technical report. arXiv:1206.1428, 2012 | PDF BibTex | RIS |
2011 |
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| Vincent J. Dercksen, Marcel Oberlaender, Bert Sakmann, Hans-Christian Hege | Light Microscopy-Based Reconstruction and Interactive Structural Analysis of Cortical Neural Networks | BioVis 2011 Abstracts, 1st IEEE Symposium on Biological Data Visualization, Oct., 2011 | PDF BibTex | RIS |
| Stefan Lang, Vincent J. Dercksen, Bert Sakmann, Marcel Oberlaender | Simulation of signal flow in 3D reconstructions of an anatomically realistic neural network in rat vibrissal cortex | Neural Networks, Vol. 24, No. 9, pp. 998-1011, 2011 | DOI BibTex | RIS |
2010 |
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| Anja Kuß, Maria Gensel, Björn Meyer, Vincent J. Dercksen, Steffen Prohaska | Effective Techniques to Visualize Filament-Surface Relationships | Comput. Graph. Forum, Vol. 29, pp. 1003-1012, 2010 | PDF BibTex | RIS |
2009 |
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| Marcel Oberlaender, Randy M. Bruno, Christiaan P.J. de Kock, Hanno-Sebastian Meyer, Vincent Jasper Dercksen, Bert Sakmann | 3D distribution and sub-cellular organization of thalamocortical VPM synapses for individual excitatory neuronal cell types in rat barrel cortex | Neuroscience 2009, the 39th Annual Meeting of the Society for Neuroscience (SfN), Conference Abstract No. 173.19/Y35, Society for Neuroscience, 2009 | PDF BibTex | RIS |
| Marcel Oberlaender, Vincent Jasper Dercksen, Stefan Lang, Bert Sakmann | 3D mapping of synaptic connections within ``in silico'' microcircuits of full compartmental neurons in extended networks on the example of VPM axons projecting into S1 of rats. | Frontiers in Neuroinformatics. Conference Abstract: 2nd INCF Congress of Neuroinformatics, 2009 | PDF DOI BibTex | RIS |
| Marcel Oberlaender, Vincent Jasper Dercksen, Robert Egger, Maria Gensel, Bert Sakmann, Hans-Christian Hege | Automated three-dimensional detection and counting of neuron somata | Journal of Neuroscience Methods, Vol. 180, No. 1, pp. 147-160, 2009 | DOIPMID BibTex | RIS |
| Vincent Jasper Dercksen, Britta Weber, David Günther, Marcel Oberlaender, Steffen Prohaska, Hans-Christian Hege | Automatic alignment of stacks of filament data | Proc. IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 971-974, IEEE press: Boston, USA, 2009 | PDF BibTex | RIS |
| Ulrike Homberg, Richard Binner, Steffen Prohaska, Vincent J. Dercksen, Anja Kuß, Ute Kalbe | Determining Geometric Grain Structure from X-Ray Micro-Tomograms of Gradated Soil | Workshop Internal Erosion, Schriftenreihe Geotechnik, K. J. Witt (Ed.), Vol. 21, pp. 37-52, 2009 | PDF BibTex | RIS |
| Vincent Jasper Dercksen, Maria Gensel, Anja Kuß | Visual Accentuation of Spatial Relationships between Filamentous and Voluminous Surface Structures | Conference Abstract: Eurographics/IEEE Symposium on Visualization, 2009 | BibTex | RIS |
2008 |
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| Marcel Oberlaender, Vincent Jasper Dercksen, Philip J. Broser, Randy M. Bruno, Bert Sakmann | NeuroMorph and NeuroCount: Automated tools for fast and objective acquisition of neuronal morphology for quantitative structural analysis | Frontiers in Neuroinformatics. Conference Abstract: Neuroinformatics, 2008 | PDF DOI BibTex | RIS |
| Vincent J. Dercksen, Cornelia Brüß, Detlev Stalling, Sabine Gubatz, Udo Seiffert, Hans-Christian Hege | Towards automatic generation of 3D models of biological objects based on serial sections | Visualization in Medicine and Life Sciences, L. Linsen, H. Hagen, B. Hamann (Eds.), pp. 3-25, Springer-Verlag Berlin Heidelberg, 2008 | PDF DOI BibTex | RIS |
| Chavdar Papazov, Vincent J. Dercksen, Hans Lamecker, Hans-Christian Hege | Visualizing morphogenesis and growth by temporal interpolation of surface-based 3D atlases | Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 824-827, 2008 | PDF DOI BibTex | RIS |
2007 |
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| Sabine Gubatz, Vincent J. Dercksen, Cornelia Brüß, Winfriede Weschke, Ulrich Wobus | Analysis of barley (hordeum vulgare) grain development using three-dimensional digital models | The Plant Journal, Vol. 52, No. 4, pp. 779-790, 2007 | DOI BibTex | RIS |
2005 |
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| Vincent Jasper Dercksen, Steffen Prohaska, Hans-Christian Hege | Fast cross-sectional display of large data sets | IAPR Conference on Machine Vision Applications, Tsukuba, Japan, May, pp. 336-339, 2005 | PDF BibTex | RIS |