2019
Daniel Baum, James C. Weaver, Igor Zlotnikov, David Knötel, Lara Tomholt, Mason N. Dean	High-Throughput Segmentation of Tiled Biological Structures using Random-Walk Distance Transforms	Integrative And Comparative Biology, 2019 (preprint available as ZIB-Report 19-33)	PDF (ZIB-Report) BibTeX DOI
2018
David Knötel, Carola Becker, Gerhard Scholtz, Daniel Baum	Global and Local Mesh Morphing for Complex Biological Objects from microCT Data	Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), pp. 179-183, 2018 (preprint available as ZIB-Report 18-53)	PDF (ZIB-Report) BibTeX DOI
2017
David Knötel, Ronald Seidel, Steffen Prohaska, Mason N. Dean, Daniel Baum	Automated Segmentation of Complex Patterns in Biological Tissues: Lessons from Stingray Tessellated Cartilage	PLOS ONE, 2017 (preprint available as ZIB-Report 17-62)	PDF (ZIB-Report) BibTeX DOI
David Knötel, Ronald Seidel, Paul Zaslansky, Steffen Prohaska, Mason N. Dean, Daniel Baum	Automated Segmentation of Complex Patterns in Biological Tissues: Lessons from Stingray Tessellated Cartilage (Supplementary Material)	2017	BibTeX DOI
R. Seidel, M. Blumer, P. Zaslansky, D. Knötel, D. R. Huber, J. C. Weaver, P. Fratzl, S. Omelon, L. Bertinetti, M. N. Dean	Ultrastructural, material and crystallographic description of endophytic masses – a possible damage response in shark and ray tessellated calcified cartilage	Journal of Structural Biology, 2017	BibTeX DOI
2016
M. N. Dean, R. Seidel, D. Knötel, K. Lyons, D. Baum, J. C. Weaver, P. Fratzl	To build a shark: 3D tiling laws of tessellated cartilage	Abstract in Integrative and Comparative Biology; conference Society of Integrative and Comparative Biology annual meeting, January 3-7, 2016, Portland, USA, Vol.56 (suppl 1), 2016	BibTeX
David Knötel, Ronald Seidel, Ahmed Hosny, Paul Zaslansky, James C. Weaver, Daniel Baum, Mason N. Dean	Understanding the Tiling Rules of the Tessellated Mineralized Endoskeleton of Sharks and Rays	Poster, Euro Bio-inspired Materials 2016, Potsdam, Germany, February 22 - 25, 2016, 2016	BibTeX
2015
Rebecca M. Hoerth, Daniel Baum, David Knötel, Steffen Prohaska, Bettina M. Willie, Georg N. Duda, Hans-Christian Hege, Peter Fratzl, Wolfgang Wagermaier	Registering 2D and 3D Imaging Data of Bone during Healing	Connective Tissue Research, 56(2), pp. 133-143, 2015 (preprint available as ZIB-Report 15-01)	PDF (ZIB-Report) BibTeX DOI
David Knötel, Ronald Seidel, James C. Weaver, Daniel Baum, Mason N. Dean	Segmentation of the Tessellated Mineralized Endoskeleton of Sharks and Rays	Poster, Tomography for Scientific Advancement symposium (ToScA), Manchester, UK, September 3 - 4, 2015, 2015	BibTeX
2014
Ronald Seidel, David Knötel, Daniel Baum, James C. Weaver, Mason N. Dean	Material and structural characterization of mineralized elasmobranch cartilage – lessons in repeated tiling patterns in mechanically loaded 3D objects	Poster, Tomography for Scientific Advancement symposium (ToScA), London, UK, September 1 - 3, 2014, 2014	BibTeX
David Knötel	Segmentation of ray and shark tesserae	Master's thesis, Freie Universität Berlin, Daniel Baum (Advisor), 2014	PDF BibTeX URN