Steffen Prohaska

Publication List

admin — Wed, 13 Feb 2013 04:33:40 +0000

A full list of my publications is available on the ZIB homepage.

Homberg et al. (2012), Automatic extraction and analysis of realistic pore structures from mCT data for pore space characterization of graded soil

admin — Wed, 12 Sep 2012 09:37:43 +0000

Ulrike Homberg, Daniel Baum, Steffen Prohaska, Ute Kalbe, and Karl Josef Witt. Automatic extraction and analysis of realistic pore structures from mCT data for pore space characterization of graded soil. In Proc. 6th Int. Conference on Scour and Erosion (ICSE-6), pages 66–73, 2012.

@inproceedings{Homberg:-2012-ICSE,
	Author = {Ulrike Homberg and Daniel Baum and Steffen Prohaska
        and Ute Kalbe and Karl Josef Witt},
	Booktitle = {Proc. 6th Int. Conference on Scour and Erosion
        (ICSE-6)},
	Pages = {66--73},
	Title = {Automatic Extraction and Analysis of Realistic Pore
        Structures from {$\mu$CT} Data for Pore Space Characterization
        of Graded Soil},
	Year = {2012}}

Weber et al. (2012), Automated tracing of microtubules in electron tomograms of plastic embedded samples of caenorhabditis elegans embryos

admin — Sat, 12 May 2012 09:38:42 +0000

Britta Weber, Garrett Greenan, Steffen Prohaska, Daniel Baum, Hans-Christian Hege, Thomas Müller-Reichert, Anthony A. Hyman, and Jean-Marc Verbavatz. Automated tracing of microtubules in electron tomograms of plastic embedded samples of caenorhabditis elegans embryos. Journal of Structural Biology, 178(2):129–138, 2012. 10.1016/j.jsb.2011.12.004.
[journal software]

@article{Weber:JOSB-2012-178-129----138,
	Author = {Britta Weber and Garrett Greenan and Steffen Prohaska
        and Daniel Baum and Hans-Christian Hege
        and Thomas M{\"u}ller-Reichert and Anthony A. Hyman
        and Jean-Marc Verbavatz},
	Journal = {Journal of Structural Biology},
	Number = {2},
	Pages = {129 -- 138},
	Title = {Automated tracing of microtubules in electron tomograms
        of plastic embedded samples of Caenorhabditis elegans embryos},
	Volume = {178},
	Year = {2012}}

Homberg et al. (2011), Describing and analyzing the dual structures of porous media

admin — Mon, 12 Dec 2011 09:59:26 +0000

Ulrike Homberg, Daniel Baum, and Steffen Prohaska. Describing and analyzing the dual structures of porous media. In Proc. 3D-Microstructure Meeting, pages 24–25, 2011.

@inproceedings{Homberg:2011--24,
	Author = {Ulrike Homberg and Daniel Baum and Steffen Prohaska},
	Booktitle = {Proc. {3D}-Microstructure Meeting},
	Pages = {24--25},
	Title = {Describing and Analyzing the Dual Structures of Porous
        Media},
	Year = {2011}}

Ehrig et al. (2011), Comparison of crack detection methods for analyzing damage processes in concrete with computed tomography

admin — Mon, 12 Dec 2011 09:52:54 +0000

Karsten Ehrig, Jürgen Goebbels, Dietmar Meinel, Olaf Paetsch, Steffen Prohaska, and Valentin Zobel. Comparison of crack detection methods for analyzing damage processes in concrete with computed tomography. In Proc. Int. Symp. Digital Industrial Radiology and Computed Tomography, 2011.
[pdf]

@inproceedings{Ehrig:2011,
	Author = {Karsten Ehrig and J{\"u}rgen Goebbels
        and Dietmar Meinel and Olaf Paetsch and Steffen Prohaska
        and Valentin Zobel},
	Booktitle = {Proc. Int. Symp. Digital Industrial Radiology
        and Computed Tomography},
	Title = {Comparison of Crack Detection Methods for Analyzing
        Damage Processes in Concrete with Computed Tomography},
	Year = {2011}}

Streicher et al. (2011), 3-D-Visualisierung von Radar- und Ultraschallecho-Daten mit ZIBAmira

admin — Mon, 12 Dec 2011 09:50:38 +0000

Doreen Streicher, Olaf Paetsch, Robert Seiler, Steffen Prohaska, Martin Krause, and Christian Boller. 3-D-Visualisierung von Radar- und Ultraschallecho-Daten mit ZIBAmira. In Proc. DGZfP-Jahrestagung 2011, 2011.
[pdf]

@inproceedings{Streicher:2011,
	Author = {Doreen Streicher and Olaf Paetsch and Robert Seiler
        and Steffen Prohaska and Martin Krause and Christian Boller},
	Booktitle = {Proc. {DGZfP}-{J}ahrestagung 2011},
	Title = {3-{D}-{V}isualisierung von {R}adar- und
        {U}ltraschallecho-{D}aten mit {ZIBAmira}},
	Year = {2011}}

Weber et al. (2011), Fast tracing of microtubule centerlines in electron tomograms

admin — Mon, 12 Dec 2011 09:33:52 +0000

Britta Weber, Marit Möller, Jean-Marc Verbavatz, Daniel Baum, Hans-Christian Hege, and Steffen Prohaska. Fast tracing of microtubule centerlines in electron tomograms. In IEEE Symposium on Biological Data Visualization, 2011.
[pdf]

@inproceedings{Weber:2011,
	Author = {Britta Weber and Marit M{\"o}ller
        and Jean-Marc Verbavatz and Daniel Baum and Hans-Christian Hege
        and Steffen Prohaska},
	Booktitle = {IEEE Symposium on Biological Data Visualization},
	Title = {Fast Tracing of Microtubule Centerlines in Electron
        Tomograms},
	Year = {2011}}

Clasen et al. (2011), Level of detail for trees using clustered ellipsoids

admin — Mon, 12 Dec 2011 09:29:37 +0000

Malte Clasen, Philip Paar, and Steffen Prohaska. Level of detail for trees using clustered ellipsoids. Technical Report 11-41, ZIB, Takustr.7, 14195 Berlin, 2011.
[pdf]

@techreport{Clasen:2011,
	Address = {Takustr.7, 14195 Berlin},
	Author = {Malte Clasen and Philip Paar and Steffen Prohaska},
	Institution = {ZIB},
	Number = {11-41},
	Title = {Level of Detail for Trees Using Clustered Ellipsoids},
	Year = {2011}}

Should I sign the Research Without Walls pledge?

admin — Sat, 22 Oct 2011 15:23:59 +0000

Slashdot thinks that the Research Without Walls pledge could be a tipping point for open access CS research.

Kleinfeld et al. (2011), Large-scale automated histology in the pursuit of connectomes

admin — Sat, 22 Oct 2011 06:05:33 +0000

David Kleinfeld, Arjun Bharioke, Pablo Blinder, Davi D. Bock, Kevin L. Briggman, Dmitri B. Chklovskii, Winfried Denk, Moritz Helmstaedter, John P. Kaufhold, Wei-Chung Allen Lee, Hanno S. Meyer, Kristina D. Micheva, Marcel Oberlaender, Steffen Prohaska, R. Clay Reid, Stephen J. Smith, Shinya Takemura, Philbert S. Tsai, and Bert Sakmann. Large-scale automated histology in the pursuit of connectomes. The Journal of Neuroscience, 31(45): 16125–16138, 2011. 10.1523/JNEUROSCI.4077-11.2011.
[preprint journal]


@article{Kleinfeld:JNS-2011,
	Author = {Kleinfeld, David and Bharioke, Arjun and Blinder, Pablo
        and Bock, Davi D. and Briggman, Kevin L. and Chklovskii, Dmitri B.
        and Denk, Winfried and Helmstaedter, Moritz and Kaufhold, John P.
        and Lee, Wei-Chung Allen and Meyer, Hanno S.
        and Micheva, Kristina D. and Oberlaender, Marcel
        and Prohaska, Steffen and Reid, R. Clay and Smith, Stephen J.
        and Takemura, Shinya and Tsai, Philbert S. and Sakmann, Bert},
	Journal = {The Journal of Neuroscience},
	Number = {45},
	Pages = {16125-16138},
	Title = {Large-Scale Automated Histology in the Pursuit of Connectomes},
	Volume = {31},
	Year = {2011},
        doi={10.1523/JNEUROSCI.4077-11.2011}
}