Steffen Prohaska

Should I sign the Research Without Walls pledge?

admin — Sat, 22 Oct 2011 15:23:59 +0000

Slashdot thinks that the Research Without Walls pledge could be a tipping point for open access CS research.

Kleinfeld et al. (2011), Large-scale automated histology in the pursuit of connectomes

admin — Sat, 22 Oct 2011 06:05:33 +0000

D. Kleinfeld, A. Bharioke, P. Blinder, D. D. Bock, K. L. Briggman, D. B. Chklovskii, W. Denk, M. Helmstaedter, J. P. Kaufhold, W-C. A. Lee, H. S. Meyer, K. D. Micheva, M. Oberlaender, S. Prohaska, R. C. Reid, S. J. Smith, S. Takemura, P. S. Tsai, and B. Sakmann. Large-scale automated histology in the pursuit of connectomes. Journal of Neuroscience, 2011 in press.
[preprint]

@article{D.-Kleinfeld:JNS-2011,
	Author = {D. Kleinfeld and A. Bharioke and P. Blinder and D. D. Bock and
        K. L. Briggman and D. B. Chklovskii and W. Denk and M. Helmstaedter and
        J. P. Kaufhold and W-C. A. Lee and H. S. Meyer and K. D. Micheva and
        M. Oberlaender and S. Prohaska and R. C. Reid and S. J. Smith and
        S. Takemura and P. S. Tsai and B. Sakmann},
	Journal = {Journal of Neuroscience},
	Title = {Large-scale automated histology in the pursuit of connectomes},
	Year = {2011 in press}}

Rigort et al. (2011), Automated segmentation of electron tomograms for a quantitative description of actin filament networks

admin — Fri, 21 Oct 2011 08:07:38 +0000

Alexander Rigort, David Günther, Reiner Hegerl, Daniel Baum, Britta Weber, Steffen Prohaska, Ohad Medalia, Wolfgang Baumeister, and Hans-Christian Hege (2011). Automated segmentation of electron tomograms for a quantitative description of actin filament networks. J Struct Biol, Sep 2011. 10.1016/j.jsb.2011.08.012.
[article, software]

@article{Rigort:JSB-2011,
	Author = {Rigort, Alexander and G{\"u}nther, David and Hegerl, Reiner and
        Baum, Daniel and Weber, Britta and Prohaska, Steffen and
        Medalia, Ohad and Baumeister, Wolfgang and Hege, Hans-Christian},
	Journal = {J Struct Biol},
	Month = {Sep},
	Title = {Automated segmentation of electron tomograms for a quantitative
        description of actin filament networks},
	Year = {2011},
        Doi = {10.1016/j.jsb.2011.08.012}}

Günther et al. (2012), Efficient computation of a hierarchy of discrete 3d gradient vector fields

admin — Thu, 21 Jul 2011 13:16:56 +0000

D. Günther, J. Reininghaus, S. Prohaska, T. Weinkauf, and H.-C. Hege. Efficient computation of a hierarchy of discrete 3d gradient vector fields. In Topological Methods in Data Analysis and Visualization II. Springer, 2012 (to appear).
[pdf]

@inproceedings{Gunther:-2011-to-appear,
	Author = {D. G{\"u}nther and J. Reininghaus and S. Prohaska and
        T. Weinkauf and H.-C. Hege},
	Booktitle = {Topological Methods in Data Analysis and Visualization II},
	Publisher = {Springer},
	Title = {Efficient Computation of a Hierarchy of Discrete 3D
        Gradient Vector Fields},
	Year = {2012 (to appear)}}

Ritter et al. (2011), Osteocytes number and volume in osteoporotic and in healthy bone biopsies analysed using synchrotron CT: a pilot study

admin — Tue, 21 Jun 2011 13:05:01 +0000

Z. Ritter, A. Staude, S Prohaska, R. Brand, A. Friedmann, H.C. Hege, J. Goebbels, and D. Felsenberg. Osteocytes number and volume in osteoporotic and in healthy bone biopsies analysed using synchrotron CT: a pilot study. In Proc. ISB 2011, 2011.
[abstract]

@inproceedings{Ritter:2011,
	Author = {Ritter, Z. and Staude, A. and Prohaska, S and Brand, R. and
        Friedmann, A. and Hege, H.C. and Goebbels, J. and Felsenberg, D.},
	Booktitle = {Proc. ISB 2011},
	Title = {Osteocytes number and volume in osteoporotic and in healthy
        bone biopsies analysed using Synchrotron {CT}: a pilot study},
	Year = {2011}}

Why most published research findings are false

admin — Thu, 07 Apr 2011 13:50:18 +0000

In detail at PLoS Medicine, and in brief at xkcd.

Clasen, M. and Prohaska, S. (2010), Image-Error-Based Level of Detail for Landscape Visualization

admin — Sun, 05 Dec 2010 14:50:25 +0000

Clasen, M. and Prohaska, S. (2010). Image-Error-Based Level of Detail for Landscape Visualization. In Proc. VMV 2010: Vision, Modeling and Visualization, pages 267–274.
[pdf, supplement]

@inproceedings{Clasen:VMV-2010--267-274,
	Author = {Malte Clasen and Steffen Prohaska},
	Booktitle = {Proc. VMV 2010: Vision, Modeling and Visualization},
	Pages = {267-274},
	Title = {{Image-Error-Based Level of Detail for Landscape Visualization}},
	Year = {2010}}

git-subtree

admin — Thu, 29 Jul 2010 06:07:14 +0000

There’s an interesting discussion about Avery Pennarun’s git-subtree and Git’s submodule concept on the git mailing list
[1, 2].

Ziegler et al. (2010), Opportunities and challenges for digital morphology

admin — Wed, 07 Jul 2010 05:39:31 +0000

Ziegler, A., Ogurreck, M., Steinke, T., Beckmann, F., Prohaska, S., and Ziegler, A. (2010). Opportunities and challenges for digital morphology. Biology Direct, 5(1):45. doi 10.1186/1745-6150-5-45.
[Open Access]

@article{Ziegler:BiologyDirect-2010-5-45,
	Author = {Ziegler, Alexander and Ogurreck, Malte
          and Steinke, Thomas and Beckmann, Felix
          and Prohaska, Steffen and Ziegler, Andreas},
	Journal = {Biology Direct},
	Number = {1},
	Pages = {45},
	Title = {Opportunities and challenges for digital morphology},
	Volume = {5},
	Year = {2010},
	Doi = {10.1186/1745-6150-5-45}}

Reininghaus et al. (2010), TADD: A computational framework for data analysis using discrete morse theory

admin — Wed, 07 Jul 2010 05:28:49 +0000

Reininghaus, J., Günther, D., Hotz, I., Prohaska, S., and Hege, H.-C. (2010). TADD: A computational framework for data analysis using discrete morse theory. In Fukuda, K., van der Hoeven, J., Joswig, M., and Takayama, N., editors, Mathematical Software – ICMS 2010, volume 6327 of Lecture Notes in Computer Science, pages 198–208. Springer.
[pdf]

@inproceedings{Reininghaus:ICMS-2010,
	Author = {Jan Reininghaus and David G{\"u}nther and Ingrid Hotz
        and Steffen Prohaska and Hans-Christian Hege},
	Booktitle = {Mathematical Software -- ICMS 2010},
	Crossref = {conf:icms:2010},
	Ee = {http://dx.doi.org/10.1007/978-3-642-15582-6_35},
	Pages = {198-208},
	Title = {{TADD}: A Computational Framework for Data Analysis
        Using Discrete Morse Theory},
	Year = {2010}}

@proceedings{conf:icms:2010,
	Booktitle = {Mathematical Software -- ICMS 2010},
	Editor = {Komei Fukuda and Joris van der Hoeven
        and Michael Joswig and Nobuki Takayama},
	Ee = {http://dx.doi.org/10.1007/978-3-642-15582-6},
	Isbn = {978-3-642-15581-9},
	Publisher = {Springer},
	Series = {Lecture Notes in Computer Science},
	Title = {Third International Congress on Mathematical Software,
         Kobe, Japan, September 13-17, 2010. Proceedings},
	Volume = {6327},
	Year = {2010}}