| heterogenous computing |
- Intel oneAPI Center of Excellence (2022-2024) - BMBF GreenHPC SeqAn@FPGA (2022-2025) - BMBF GreenHPC NAAICE (2022-2025) |
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| supercomputing & life sciences |
- acceleration of life science applications - large-scale quantum-chemical calculations - parallel computing in quantum chemistry - fast complex molecular simulations |
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| today's local systems |
- HLRN-IV: Lise, Bull/Intel Cluster - NEC SX-Aurora TSUBASA with 8x Vector Engines - 2x servers with Intel Optane NVRAM - FPGA development systems: 2x Intel PAC D5005 (Stratix 10), Intel PAC /w Arria 10, Pico Computing - GPU development systems: Nvidia A100 and P100, AMD MI200x |
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| past systems |
- 2016-2019: Cray TDS, 80 Intel Xeon Phi (KNL) nodes + 10 Cray DataWarp nodes - 2014-2019: HLRN-III: Cray XC40/30 - 2010s @ ZIB - FPGA systems: Convey HC-1, Cray XD1 /w FPGAs, SGI Altix 450 /w RC100 FPGA blades - 2010s @ ZIB - GPU systems: Supermicro Server with 4x NVIDIA Fermi M2090 GPUs - 2010s @ HLRN - Many-core systems: Intel Xeon Phi Cluster, Intel TrueScale, 4x nodes - 2010s @ HLRN-II: SGI ICE 8200+, SGI UV - 2000s @ HLRN-I: IBM p690 constellation - 1990s @ ZIB: Cray XMP, YMP, J90, T3D, T3E - 1990s @ HUB: Convex C1, Alliant FX2800 |
| heterogenous computing |
- MANY-CORE HPC: Research Center for Many-core High-Performance Computing [2013-] (INTEL) - ORKA-HPC: OpenMP for reconfigurable heterogeneous architectures - HighPerMeshes: Domain-specific programming and target-platform-aware compiler infrastructure for algorithms on unstructured grids more info: >>> www.highpermeshes.info - ENHANCE: Enabling Heterogeneous Hardware Acceleration using Novel Programming and Scheduling Models [2011-2013] (BMBF) - Accelerator technology evaluation: MIC, GPGPU, CellBE, FPGA, SIMD - Application acceleration, >>> OpenAccelerator.org - Reconfigurable Computing, >>> OpenFPGA, Inc. |
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| applications in distributed systems |
- MoSGrid: Molecular Simulation Grid - eScience services for molecular simulations [2009-2012] (BMBF) - PneumoGrid: eScience services for the treatment of chronic obstructive pulmonary disease [2009-2012] (BMBF) - services@MediGRID: eScience services for biomedical applications (BMBF, finished) - MedInfoGrid: eScience services for medical data management (BMBF, finished) - MediGRID: eScience infrastructure for biomedical & life science (BMBF, finished) - GRIDCHEM: COST Action D37 - Grid computing in chemistry (finished) - workflows in life science application scenarios |
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| threading (fold recognition) | 3D protein structure prediction from 1D sequences (part of the BCB project) |