Supercomputing

HLRN-IV "Lise"

Die Abteilung Supercomputing forscht interdisziplinär in den Bereichen Hardware- und Software-Technologien für das Hochleistungsrechnen und Wissenschaftliche Rechnen.

In der Arbeitsgruppe Algorithmen für Innovative Architekturen werden in enger Zusammenarbeit mit Technologieanbietern, Fachwissenschaftlern und dem Team des NHR-Zentrums am ZIB neue Methoden entwickelt, um das Potential innovativer Hardware- und Software-Technologien für verschiedene Wissenschaftsdisziplinen wie Lebenswissenschaften, Chemie/Materialwissenschaften und Numerische Mathematik zu erschließen. Im Fokus unserer Arbeiten stehen Rechnerarchitekturen, die heterogene Konfigurationen bei Prozessoren (CPUs, Vektor-CPU) mit Beschleunigern (GPU, FPGA) und bei den Speicherkomponenten (HBM, DRAM, NVRAM, NVMe) aufweisen. Dafür entwerfen und implementieren wir neue algorithmische Ansätze zur portablen Nutzung dieser Technologien und unterstützen die Anwendungsentwickler bei der Integration unserer Lösungsvorschläge in ihre Programme.

In der Arbeitsgruppe Dynamik komplexer Materialien werden neue Methoden zur Simulation komplex-strukturierter Materialen und molekularer Systeme entwickelt. Ein Schwerpunkt der Arbeiten liegt dabei in der Implementierung skalierbarer Algorithmen für innovative HPC Architekturen.

Für unsere Untersuchungen nutzen wir innovative Rechenarchitekturen mit CPUs, GPUs, FPGAs und Vektor-CPUs mit HBM sowie Speichersysteme mit NVRAM und NVMe SSDs, beispielsweise in Kombination mit Software-Frameworks wie DAOS.

Arbeitsgruppen zu neuen Schwerpunktthemen befinden sich derzeit im Aufbau.

Publikationen

2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 2003 2002 2001 2000

2023
Masoud Gholami, Florian Schintke	CAWL: A Cache-aware Write Performance Model of Linux Systems	pp. 1-22, 2023	BibTeX DOI arXiv
Zsofia Borbala Rozsa, Anita Ragyanszki, Bela Viskolcz, Milan Szori	Chemical space of the singlet C4H8O2 species. A systematic theoretical analysis on their structural and thermochemical properties	Computational and Theoretical Chemistry, Vol.1225, p. 114162, 2023	BibTeX DOI
Steffen Christgau, Dylan Everingham, Florian Mikolajczak, Niklas Schelten, Bettina Schnor, Max Schroetter, Benno Stabernack, Fritjof Steinert	Enabling Communication with FPGA-based Network-attached Accelerators for HPC Workloads	Proceedings of the SC'23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis, SC-W 2023, Denver, CO, USA, November 12-17, 2023, pp. 530-538, 2023	BibTeX DOI
Viktor Skoblin, Felix Höfling, Steffen Christgau	Gaining Cross-Platform Parallelism for HAL’s Molecular Dynamics Package using SYCL	29. PARS-Workshop 2023, Vol.36, Mitteilungen - Gesellschaft für Informatik e.V., Parallel-Algorithmen und Rechnerstrukturen, 2023 (accepted for publication)	BibTeX
Hongchen Ji, Anita Ragyanszki, Rene A. Fournier	Machine learning estimation of reaction energy barriers	Computational and Theoretical Chemistry, Vol.1229, p. 114332, 2023	BibTeX DOI
Nicholas Charron, Félix Musil, Andrea Guljas, Yaoyi Chen, Klara Bonneau, Aldo Pasos-Trejo, Venturin Jacopo, Gusew Daria, Iryna Zaporozhets, Andreas Krämer, Clark Templeton, Kelkar Atharva, Aleksander Durumeric, Simon Olsson, Adrià Pérez, Maciej Majewski, Brooke Husic, Ankit Patel, Gianni De Fabritiis, Frank Noé, Cecilia Clementi	Navigating protein landscapes with a machine-learned transferable coarse-grained model	Arxiv, 2023 (under review)	BibTeX DOI
Benjamin Kaiser, Robert Clausecker, Michael Mavroskoufis	Prioritised Unit Propagation by Partitioning the Watch Lists	Proceedings of the 14th International Workshop on Pragmatics of SAT co-located with the 26th International Conference on Theory and Applications of Satisfiability Testing (SAT 2023), pp. 14-34, Vol.3545, 2023	BibTeX
Anita Ragyanszki, Bela Fiser, Edward Lee-Ruff, Joel F. Liebman	Strained Small Nitrogen Heterocycles-Azabicyclobutanes and Azirines	ChemistrySelect, 8(26), 2023	BibTeX DOI
Anett Juhasz, Uneri Haymana Serra, Csilla Lakatos, Bence Vadkerti, Anita Ragyanszki, Odon Farkas, Sandor Keki, Lajos Nagy	The kinetics of uncatalyzed and catalyzed urethane forming reactions of aliphatic diisocyanates with butan-1-ol	New J. Chem., Vol.47, pp. 16096-16107, 2023	BibTeX DOI
Veronica R. Policht, Henry Mittenzwey, Oleg Dogadov, Manuel Katzer, Andrea Villa, Qiuyang Li, Benjamin Kaiser, Aaron M. Ross, Francesco Scotognella, Xiaoyang Zhu, Andreas Knorr, Malte Selig, Giulio Cerullo, Stefano Dal Conte	Time-domain observation of interlayer exciton formation and thermalization in a MoSe2/WSe2 heterostructure	Nature Communications, Vol.14, pp. 1-9, 2023	BibTeX DOI
Robert Clausecker, Daniel Lemire	Transcoding unicode characters with AVX-512 instructions	Software: Practice and Experience, 53(12), pp. 2430-2462, 2023	BibTeX DOI
Florian Schintke, Ninon De Mecquenem, Vanessa Emanuela Guarino, Marcus Hilbrich, Fabian Lehmann, Rebecca Sattler, Jan Arne Sparka, Daniel Speckhard, Hermann Stolte, Anh Duc Vu, Ulf Leser	Validity Constraints for Data Analysis Workflows	pp. 1-28, 2023	BibTeX DOI arXiv
2022
Steffen Christgau, Marius Knaust, Thomas Steinke	A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs	IEEE/ACM International Workshop on Heterogeneous High-performance Reconfigurable Computing, H2RC@SC 2022, Dallas, TX, USA, November 13-18, 2022, pp. 9-17, 2022	BibTeX DOI
Arthur Straube, Stefanie Winkelmann, Felix Höfling	Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles	ZIB-Report 22-21	PDF BibTeX DOI URN
Glenn Brook, Douglas Fuller, John Swinburne, Steffen Christgau, Matthias Läuter, Ronaldo Rodrigues Pelá, Stein Lewin, Tuma Christian, Thomas Steinke	An Early Scalability Study of Omni-Path Express	ISC High Performance, 2022	BibTeX DOI
Angar Lößer, Joel Witzke, Florian Schintke, Björn Scheuermann	BottleMod: Modeling Data Flows and Tasks for Fast Bottleneck Analysis	arXiv, pp. 1-20, 2022	BibTeX DOI arXiv
Angar Lößer, Joel Witzke, Florian Schintke, Björn Scheuermann	BottleMod: Modeling Data Flows and Tasks for Fast Bottleneck Analysis	2022 IEEE International Conference on Big Data, Posters, 2022	BibTeX
Marius Knaust, Enrico Seiler, Knut Reinert, Thomas Steinke	Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA	FPGA '22: Proceedings of the 2022 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, pp. 180-189, 2022	BibTeX DOI
Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg	Determination of the ice composition near the surface of comet 67P/Churyumov-Gerasimenko	Europlanet Science Congress, p. EPSC2022-826, 2022	BibTeX DOI
Ronaldo Rodrigues Pela, Claudia Draxl	Ehrenfest dynamics implemented in the all-electron package exciting	Electron. Struct., Vol.4, p. 037001, 2022	BibTeX DOI
Masoud Gholami, Florian Schintke	IOSIG: Declarative I/O-Stream Properties Using Pragmas	Datenbank-Spektrum, 22(2), pp. 109-119, 2022	PDF BibTeX DOI
Farouk Salem, Florian Schintke	Large-Scale Performance of the Data-Flow Scheduler (DFS) and FLESnet	CBM Progress Report 2021, pp. 170-171, 2022	BibTeX DOI
Johanna Bürger, Bastian Gundlach, Jürgen Blum, Paul Hayne, Matthias Läuter, Tobias Kramer	Lunar regolith properties derived from LRO/Diviner data and thermophysical modelling	Europlanet Science Congress, p. EPSC2022-92, 2022	BibTeX DOI
Steffen Fürst, Christian Rakow	Parallelization of large-scale agent-based epidemiological simulations	Proceedings of the 34th European Modeling & Simulation Symposium, 2022	BibTeX DOI
Zahra Mokhtari, Robert I. A. Patterson, Felix Höfling	Spontaneous trail formation in populations of auto-chemotactic walkers	New Journal of Physics, Vol.24, p. 013012, 2022 (preprint available as ZIB-Report 21-36)	PDF (ZIB-Report) BibTeX DOI
Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, F.J. Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, J. Teich, Martin Weiser, Florian Wende	The HighPerMeshes Framework for Numerical Algorithms on Unstructured Grids	Concurrency and Computation: Practice and Experience, 34(14), 2022	BibTeX DOI
Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg	The ice composition close to the surface of comet 67P/Churyumov-Gerasimenko	ACS Earth and Space Chemistry, 6(5), pp. 1189-1203, 2022	BibTeX DOI arXiv
Tobias Kramer, Matthias Läuter	The near nucleus gas and dust environment around comet 67P/Churyumov-Gerasimenko	Europlanet Science Congress, p. EPSC2022-281, 2022	BibTeX DOI
Jonathan Bader, Joel Witzke, Soeren Becker, Ansgar Lößer, Fabian Lehmann, Leon Doehler, Anh Duc Vu, Odej Kao	Towards Advanced Monitoring for Scientific Workflows	2022 IEEE International Conference on Big Data, 11th Workshop on Scalable Cloud Data Management, 2022	BibTeX arXiv
2021
Robert Clausecker, Florian Schintke	*A Measure of Quality for IDA Heuristics**	Proceedings of the Fourteenth International Symposium on Combinatorial Search (SoCS 2021), pp. 55-63, 2021	PDF BibTeX
Mathias Lemke, Lewin Stein, Arne Hölter, Stefan Weinzierl	Adjungierten-basierte Synthese und Bestimmung optimaler Treiberfunktionen von Lautsprechern mit komplexer Richtcharakteristik	Deutsche Gesellschaft für Akustik e.V., 2021, ISBN: 978-3-939296-18-8	BibTeX DOI
Benjamin Kaiser, Robert Clausecker	CleanMaple	SAT Competition 2021: Solver Descriptions, 2021	BibTeX
Benjamin Kaiser, Robert Clausecker	CleanMaple_PriPro, CaDiCaL_PriPro and CaDiCaL_PriPro_no_bin	SAT Competition 2021: Solver Descriptions, 2021	BibTeX
Masoud Gholami, Florian Schintke	Combining XOR and Partner Checkpointing for Resilient Multilevel Checkpoint/Restart	2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS), pp. 277-288, 2021	BibTeX DOI
Yogyata Pathania, Dipanjan Chakraborty, Felix Höfling	Continuous demixing transition of binary liquids: finite-size scaling from the analysis of sub-systems	Advances Theory and Simulation, Vol.4, p. 2000235, 2021	BibTeX DOI
Lasse Thostrup, Jan Skrzypczak, Matthias Jasny, Tobias Ziegler, Carsten Binnig	DFI: The Data Flow Interface for High-Speed Networks	SIGMOD '21: International Conference on Management of Data, pp. 1825-1837, 2021	BibTeX DOI
Daniela Frömberg, Felix Höfling	Generalized master equation for first-passage problems in partitioned spaces	Journal of Physics A: Mathematical and Theoretical, Vol.54, p. 215601, 2021	BibTeX DOI
Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende	HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids	Euro-Par 2020: Parallel Processing Workshops., pp. 185-196, 2021	BibTeX DOI
Farouk Salem, Florian Schintke	Load balancing mechanism for FLESnet	CBM Progress Report 2020, pp. 156-157, 2021	BibTeX DOI
Tobias Kramer, Matthias Läuter	Matching the activity of comet 67P/Churyumov-Gerasimenko with long-term ground-based astrometry	Europlanet Science Congress, p. EPSC2021-337, Vol.15, 2021	BibTeX DOI
Rupert Klein, Roya Ebrahimi Viand, Felix Höfling, Luigi Delle Site	Nonequilibrium induced by reservoirs: Physico-mathematical model and numerical tests	Advances Theory and Simulation, Vol.4, p. 2100071, 2021	BibTeX DOI
Tobias Baumann, Matthias Noack, Thomas Steinke	Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs	IWOCL'21: International Workshop on OpenCL, 2021	BibTeX DOI
Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling	Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles	J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021	BibTeX DOI
Ulf Leser, Marcus Hilbrich, Claudia Draxl, Peter Eisert, Lars Grunske, Patrick Hostert, Dagmar Kainmüller, Odej Kao, Birte Kehr, Timo Kehrer, Christoph Koch, Volker Markl, Henning Meyerhenke, Tilmann Rabl, Alexander Reinefeld, Knut Reinert, Kerstin Ritter, Björn Scheuermann, Florian Schintke, Nicole Schweikardt, Matthias Weidlich	The Collaborative Research Center FONDA	Datenbank-Spektrum, 21(3), pp. 255-260, 2021	BibTeX DOI
Abbas Gholami, Felix Höfling, Rupert Klein, Luigi Delle Site	Thermodynamic relations at the coupling boundary in adaptive resolution simulations for open systems	Advances Theory and Simulation, Vol.4, p. 2000303, 2021	BibTeX DOI
2020
Mathias Lemke, Lewin Stein	Adjoint-Based Identification of Sound Sources for Sound Reinforcement and Source Localization	Notes on Numerical Fluid Mechanics and Multidisciplinary Design, Springer, Cham, pp. 263-278, 2020, ISBN: 978-3-030-52429-6	BibTeX DOI
Nico Kruber	Approximate Distributed Set Reconciliation with Defined Accuracy	Doctoral thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld (Advisor), 2020	BibTeX DOI URN
Marc Hartung	CTSat: C++ Template Abstractions for Dynamic Interchangeable SAT Solver Features	Proceedings of SAT Competition 2020: Solver and Benchmark Descriptions, pp. 32-33, 2020	BibTeX
Ralph L. Stoop, Arthur Straube, Tom H. Johansen, Pietro Tierno	Collective directional locking of colloidal monolayers on a periodic substrate	Phys. Rev. Lett., Vol.124, p. 058002, 2020	BibTeX DOI
Steffen Christgau, Bettina Schnor	Comparing MPI Passive Target Synchronization on a Non-Cache-Coherent Shared-Memory Processor	Mitteilungen - Gesellschaft für Informatik e. V., Parallel-Algorithmen und Rechnerstrukturen, ISSN 0177-0454, 28. PARS-Workshop, pp. 121-132, 2020	BibTeX
Marc Hartung, Benjamin Kaiser	Crafted Benchmarks with Artificial Community Structure and Known Complexity	Proceedings of SAT Competition 2020: Solver and Benchmark Descriptions, pp. 89-90, 2020	BibTeX
Lewin Stein, Florian Straube, Stefan Weinzierl, Mathias Lemke	Directional sound source modeling using the adjoint Euler equations in a finite-difference time-domain approach	Acoustical Society of America, 148(5), pp. 3075-3085, 2020	PDF BibTeX DOI
Tobias Kramer, Mirta Rodríguez	Effect of disorder and polarization sequences on two-dimensional spectra of light harvesting complexes	Photosynthesis Research, Vol.144, pp. 147-154, 2020	BibTeX arXiv DOI
Felix Höfling, Siegfried Dietrich	Finite-size corrections for the static structure factor of a liquid slab with open boundaries	The Journal of Chemical Physics, Vol.153, p. 054119, 2020	BibTeX DOI
Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg	Gas production for 14 species on comet 67P/Churyumov-Gerasimenko from 2014-2016	Europlanet Science Congress, p. EPSC2020-319, Vol.14, 2020	BibTeX DOI
Farouk Salem, Florian Schintke, Alexander Reinefeld	Handling Compute-Node Failures in FLESnet	CBM Progress Report 2019, pp. 167-168, 2020, ISBN: 978-3-9815227-8-5	BibTeX DOI
Margaux Hoang, Philippe Garnier, Jeremie Lasue, Henri Rème, Maria Teresa Capria, Kathrin Altwegg, Matthias Läuter, Tobias Kramer, Martin Rubin	Investigating the Rosetta/RTOF observations of comet 67P/Churyumov-Gerasimenko using a comet nucleus model: Influence of dust mantle and trapped CO	Astronomy & Astrophysics, Vol.638, p. A106, 2020	BibTeX DOI
Steffen Christgau, Thomas Steinke	Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS	2020 IEEE/ACM Workshop on Memory Centric High Performance Computing (MCHPC), pp. 17-24, 2020, ISBN: 978-0-7381-1067-7	BibTeX DOI
Tobias Kramer, Matthias Läuter	Non-gravitational force model vs observation: the trajectory and rotation-axis of comet 67P/Churyumov-Gerasimenko	Europlanet Science Congress, p. EPSC2020-403, Vol.14, 2020	BibTeX DOI
Benjamin Kaiser, Marc Hartung	PauSat	Proceedings of SAT Competition 2020: Solver and Benchmark Descriptions, pp. 34-35, 2020	BibTeX
Steffen Christgau, Thomas Steinke	Porting a Legacy CUDA Stencil Code to oneAPI	2020 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2020, New Orleans, LA, USA, May 18-22, 2020, pp. 359-367, 2020, ISBN: 978-1-7281-7445-7	BibTeX DOI
Jan Skrzypczak, Florian Schintke, Thorsten Schütt	RMWPaxos: Fault-Tolerant In-Place Consensus Sequences	IEEE Transactions on Parallel and Distributed Systems, 31(10), pp. 2392-2405, 2020	BibTeX DOI arXiv
Arthur Straube, Bartosz G. Kowalik, Roland R. Netz, Felix Höfling	Rapid onset of molecular friction in liquids bridging between the atomistic and hydrodynamic pictures	Commun. Phys., Vol.3, p. 126, 2020	BibTeX DOI
Farouk Salem, Florian Schintke, Thorsten Schütt, Alexander Reinefeld	Scheduling data streams for low latency and high throughput on a Cray XC40 using Libfabric	Concurrency and Computation Practice and Experience, 32(20), pp. 1-14, 2020	PDF BibTeX DOI
Mathias Lemke, Lewin Stein, Arne Hölter, Florian Straube, Stefan Weinzierl	Synthese komplexer Richtcharakteristiken für eine Schallfeldoptimierung im Zeitbereich	Jürgen Peissig (Ed.), Deutsche Gesellschaft für Akustik e.V., 2020, ISBN: 978-3939296171	BibTeX DOI
Robert Clausecker	The Quality of Heuristic Functions for IDA*	ZIB-Report 20-17	PDF BibTeX URN
Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg	The gas production of 14 species from comet 67P/Churyumov-Gerasimenko based on DFMS/COPS data from 2014-2016	Monthly Notices of the Royal Astronomical Society, 498(3), pp. 3995-4004, 2020	BibTeX arXiv DOI
Roya Ebrahimi Viand, Felix Höfling, Rupert Klein, Luigi Delle Site	Theory and simulation of open systems out of equilibrium	The Journal of Chemical Physics, Vol.153, p. 101102, 2020	BibTeX DOI
Jan Skrzypczak, Florian Schintke	Towards Log-Less, Fine-Granular State Machine Replication	Datenbank Spektrum, 20(3), pp. 231-241, 2020	BibTeX DOI
Thorsten Schütt, Florian Schintke, Jan Skrzypczak	Transactions on Red-black and AVL trees in NVRAM	arXiv, 2020	BibTeX arXiv
Tobias Kramer	Transient capture of electrons in magnetic fields, or: comets in the restricted three-body problem	Journal of Physics: Conference Series, p. 012019, Vol.1612, 2020	BibTeX arXiv DOI
Jonas Spenger	Using Blockchain for Tamper-Proof Broadcast Protocols	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2020	PDF BibTeX URN
2019
Daniel Deppisch	Advancing the Heterogeneous Active Messages Approach	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2019	BibTeX
Eric J. Heller, Ragnar Fleischmann, Tobias Kramer	Branched Flow	2019 (under review)	BibTeX arXiv
Florian Wende	C++ Data Layout Abstractions through Proxy Types	2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 14th International Workshop on Automatic Performance Tunings (iWAPT), pp. 758-767, 2019	BibTeX DOI
Arthur Straube, Josep M. Pagès, Pietro Tierno, Jordi Ignés-Mullol, Francesc Sagués	Collective dynamics and conformal ordering in electrophoretically driven nematic colloids	Phys. Rev. Research, Vol.1, p. 022008, 2019	BibTeX DOI
Tobias Kramer, Matthias Läuter, Stubbe Hviid, Laurent Jorda, Horst Uwe Keller, Ekkehard Kührt	Comet 67P/Churyumov-Gerasimenko rotation changes derived from sublimation induced torques	Astronomy & Astrophysics, Vol.630, p. A3, 2019	BibTeX arXiv DOI
Gustavo Alonso, Carsten Binnig, Ippokratis Pandis, Kenneth Salem, Jan Skrzypczak, Ryan Stutsman, Lasse Thostrup, Tianzheng Wang, Zeke Wang, Tobias Ziegler	DPI: The Data Processing Interface for Modern Networks	9th Biennial Conference on Innovative Data Systems Research, 2019	PDF BibTeX
Manuel Dibak, Christoph Fröhner, Frank Noé, Felix Höfling	Diffusion-influenced reaction rates in the presence of pair interactions	The Journal of Chemical Physics, Vol.151, p. 164105, 2019	BibTeX DOI arXiv
Dirk Mattes	Ein System zur deterministischen Wiedergabe von verteilten Algorithmen auf Anwendungsebene	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2019	BibTeX
Carsten Weinhold, Adam Lackorzynski, Jan Bierbaum, Martin Küttler, Maksym Planeta, Hannes Weisbach, Matthias Hille, Hermann Härtig, Alexander Margolin, Dror Sharf, Ely Levy, Pavel Gak, Amnon Barak, Masoud Gholami, Florian Schintke, Thorsten Schütt, Alexander Reinefeld, Matthias Lieber, Wolfgang Nagel	FFMK: A Fast and Fault-Tolerant Microkernel-Based System for Exascale Computing	Software for Exascale Computing - SPPEXA 2016-2019, pp. 483-516, 2019	BibTeX DOI
Matthias Noack	Heterogeneous Active Messages (HAM) — Implementing Lightweight Remote Procedure Calls in C++	Proceedings of the 5th International Workshop on OpenCL, The Distributed & Heterogeneous Programming in C/C++ (DHPCC++ 2019) Conference, 2019	BibTeX DOI
Matthias Noack, Erich Focht, Thomas Steinke	Heterogeneous Active Messages for Offloading on the NEC SX-Aurora TSUBASA	2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Heterogeneity in Computing Workshop (HCW 2019), 2019	BibTeX
Jakob Schneck, Martin Weiser, Florian Wende	Impact of mixed precision and storage layout on additive Schwarz smoothers	ZIB-Report 18-62 (accepted for Numerical Linear Algebra with Applications)	PDF BibTeX URN
Farouk Salem, Florian Schintke, Thorsten Schütt, Alexander Reinefeld	Improving the throughput of a scalable FLESnet using the Data-Flow Scheduler	CBM Progress Report 2018, pp. 149-150, 2019, ISBN: 978-3-9815227-6-1	BibTeX DOI
Marc Hartung, Florian Schintke	Learned Clause Minimization in Parallel SAT Solvers	Pragmatics of SAT 2019, pp. 1-11, 2019	BibTeX arXiv
Jan Skrzypczak, Florian Schintke, Thorsten Schütt	Linearizable State Machine Replication of State-Based CRDTs without Logs	Proceedings of the 2019 ACM Symposium on Principles of Distributed Computing, PODC 2019, pp. 455-457, 2019	BibTeX DOI
Jan Skrzypczak, Florian Schintke, Thorsten Schütt	Linearizable State Machine Replication of State-Based CRDTs without Logs	arXiv, 2019	BibTeX arXiv
Steffen Christgau, Bettina Schnor	MPI Passive Target Synchronization on a Non-Cache-Coherent Shared-Memory Processor	ZIB-Report 19-52	PDF BibTeX URN DOI
Mirta Rodríguez, Tobias Kramer	Machine Learning of Two-Dimensional Spectroscopic Data	Chemical Physics, Vol.520, pp. 52-60, 2019	BibTeX DOI arXiv
Luigi Delle Site, Christian Krekeler, John Whittaker, Animesh Agarwal, Rupert Klein, Felix Höfling	Molecular Dynamics of Open Systems: Construction of a Mean‐Field Particle Reservoir	Advanced Theory and Simulations, Vol.2, p. 1900014, 2019	BibTeX DOI arXiv
Masoud Gholami, Florian Schintke	Multilevel Checkpoint/Restart for Large Computational Jobs on Distributed Computing Resources	2019 IEEE 38th Symposium on Reliable Distributed Systems (SRDS), pp. 143-152, 2019	BibTeX DOI
Florian Mayer, Marius Knaust, Michael Philippsen	OpenMP on FPGAs—A Survey	OpenMP: Conquering the Full Hardware Spectrum, pp. 94-108, 2019	BibTeX DOI
Marius Knaust, Florian Mayer, Thomas Steinke	OpenMP to FPGA Offloading Prototype Using OpenCL SDK	2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), pp. 387-390, 2019	BibTeX DOI
Tobias Kramer, Matthias Läuter	Outgassing induced acceleration of comet 67P/Churyumov-Gerasimenko	Astronomy & Astrophysics, Vol.630, p. A4, 2019	BibTeX arXiv DOI
Marc Hartung, Florian Schintke, Thorsten Schütt	Pinpoint Data Races via Testing and Classification	2019 IEEE International Symposium on Software Reliability Engineering Workshops (ISSREW); 3rd International Workshop on Software Faults (IWSF 2019), pp. 386-393, 2019	BibTeX DOI
Farouk Salem, Thorsten Schütt, Florian Schintke, Alexander Reinefeld	Scheduling Data Streams for Low Latency and High Throughput on a Cray XC40 Using Libfabric	CUG Conference Proceedings, 2019	PDF BibTeX
Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg	Surface localization of gas sources on comet 67P/Churyumov-Gerasimenko based on DFMS/COPS data	Monthly Notices of the Royal Astronomical Society, Vol.483, pp. 852-861, 2019	BibTeX DOI arXiv
Joshua L. Abbott, Arthur Straube, Dirk G. A. L. Aarts, Roel P. A. Dullens	Transport of a colloidal particle driven across a temporally oscillating optical potential energy landscape	New J. Phys., Vol.21, p. 083027, 2019	BibTeX DOI
Marc Hartung	ZIB_Glucose: Luby Blocked Restarts and Dynamic Vivification	Proceedings of SAT Race 2019 : Solver and Benchmark Descriptions, pp. 43-44, 2019	PDF BibTeX
Robert Clausecker, Alexander Reinefeld	Zero-Aware Pattern Databases with 1-Bit Compression for Sliding Tile Puzzles	Proceedings of the Twelfth International Symposium on Combinatorial Search (SoCS 2019), pp. 35-43, 2019	BibTeX
2018
Lennart Steininger	Atomarer Datenzugriff auf verteilten persistenten Arbeitsspeicher	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Jens-Peter Redlich (Advisors), 2018	BibTeX
Masoud Gholami, Florian Schintke, Thorsten Schütt	Checkpoint Scheduling for Shared Usage of Burst-Buffers in Supercomputers	Proceedings of the 47th International Conference on Parallel Processing Companion; SRMPDS 2018: The 14th International Workshop on Scheduling and Resource Management for Parallel and Distributed Systems, pp. 44:1-44:10, 2018	BibTeX DOI
Robert Schmidtke, Kenny Erleben	Chunked Bounding Volume Hierarchies for Fast Digital Prototyping using Volumetric Meshes	IEEE Transactions on Visualization and Computer Graphics, 24(12), pp. 3044-3057, 2018	BibTeX DOI
Matthias Noack, Alexander Reinefeld, Tobias Kramer, Thomas Steinke	DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion	2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 19th IEEE Int. Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC 2018), pp. 947-956, 2018, ISBN: 978-1-5386-5555-9	BibTeX DOI
Farouk Salem, Florian Schintke, Thorsten Schütt, Alexander Reinefeld	Data-flow scheduling for a scalable FLESnet	CBM Progress Report 2017, pp. 130-131, 2018, ISBN: 978-3-9815227-5-4	BibTeX DOI
Tobias Kramer, Matthias Noack, Daniel Baum, Hans-Christian Hege, Eric J. Heller	Dust and gas emission from cometary nuclei: the case of comet 67P/Churyumov-Gerasimenko	Advances in Physics: X, 3(1), p. 1404436, 2018 (preprint available as ZIB-Report 17-78)	PDF (ZIB-Report) BibTeX DOI
Tobias Kramer, Matthias Noack, Alexander Reinefeld, Mirta Rodríguez, Yaroslav Zelinskyi	Efficient calculation of open quantum system dynamics and time-resolved spectroscopy with Distributed Memory HEOM (DM-HEOM)	Journal of Computational Chemistry, 39(22), pp. 1779-1794, 2018	BibTeX arXiv DOI
Tobias Kramer, Matthias Noack, Jeffrey R. Reimers, Alexander Reinefeld, Mirta Rodríguez, Shiwei Yin	Energy flow in the Photosystem I supercomplex: comparison of approximative theories with DM-HEOM	Chemical Physics, Vol.515, pp. 262-271, 2018	BibTeX arXiv DOI
Robert Schmidtke, Florian Schintke, Thorsten Schütt	From Application to Disk: Tracing I/O Through the Big Data Stack	High Performance Computing ISC High Performance 2018 International Workshops, Frankfurt/Main, Germany, June 24 - 28, 2018, Revised Selected Papers, Workshop on Performance and Scalability of Storage Systems (WOPSSS), pp. 89-102, 2018	BibTeX DOI
Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg	Gas production of comet 67P/Churyumov-Gerasimenko reconstructed from DFMS/COPS data	Europlanet Science Congress, p. EPSC2018-515-1, Vol.12, 2018	BibTeX
Felix Seibert, Mathias Peters, Florian Schintke	Improving I/O Performance Through Colocating Interrelated Input Data and Near-Optimal Load Balancing	Proceedings of the IPDPSW; Fourth IEEE International Workshop on High-Performance Big Data, Deep Learning, and Cloud Computing (HPBDC), Vol.2018, pp. 448-457, 2018	BibTeX DOI
Masoud Gholami, Florian Schintke, Thorsten Schütt, Alexander Reinefeld	Modeling Checkpoint Schedules for Concurrent HPC Applications	CoSaS 2018 International Symposium on Computational Science at Scale, 2018	BibTeX
Tobias Kramer, Matthias Läuter	Modelling the inner coma of comet 67P/Churyumov-Gerasimenko	Europlanet Science Congress, p. EPSC2018-115-1, Vol.12, 2018	BibTeX
Florian Wende, Martijn Marsman, Jeongnim Kim, Fedor Vasilev, Zhengji Zhao, Thomas Steinke	OpenMP in VASP: Threading and SIMD	International Journal of Quantum Chemistry, p. e25851, 2018 (in press)	BibTeX DOI
Alexander Kammeyer	Radix sort for massively parallel hardware: a multi-GPU implementation	Master's thesis, Freie Universität Berlin, Thomas Steinke, Katinka Wolter, Felix Höfling (Advisors), 2018	BibTeX
2017
Thomas Orgis, Matthias Läuter, Dörthe Handorf, Klaus Dethloff	Baroclinic waves on the β plane using low-order Discontinuous Galerkin discretisation	Journal of Computational Physics, Vol.339, pp. 461-481, 2017	BibTeX DOI
T. Ablyazimov, A. Abuhoza, R. P. Adak, Alexander Reinefeld, Florian Schintke, et al.	Challenges in QCD matter physics – The scientific programme of the Compressed Baryonic Matter experiment at FAIR	The European Physical Journal A, 2017	BibTeX DOI
Johannes Dillmann	Implementierung und Evaluation von Erasure Coding im verteilten Dateisystem XtreemFS	Master's thesis, Freie Universität Berlin, Katinka Wolter, Florian Schintke (Advisors), 2017	BibTeX
Zully Ritter, Daniel Belavy, Wolfgang Baumann, Dieter Felsenberg	In vivo bone remodeling rates determination and compressive stiffness variations before, during 60 days bed rest and two years follow up: a micro-FE-analysis from HR-pQCT measurements of the Berlin bed rest study-2	Acta Astronautica, Vol.132, pp. 67-77, 2017	BibTeX DOI
Matthias Noack, Florian Wende, Georg Zitzlsberger, Michael Klemm, Thomas Steinke	KART - A Runtime Compilation Library for Improving HPC Application Performance	High Performance Computing: ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P^3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017, Revised Selected Papers, Springer International Publishing, pp. 389-403, 2017 (preprint available as ZIB-Report 16-48)	PDF (ZIB-Report) BibTeX DOI
Tobias Kramer, Mirta Rodriguez, Yaroslav Zelinskyi	Modeling of Transient Absorption Spectra in Exciton Charge-Transfer Systems	Journal of Physical Chemistry B, Vol.121, pp. 463-470, 2017	BibTeX DOI arXiv
Robert Clausecker	Notes on the Construction of Tablebases	Bachelor's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Johannes Köbler (Advisors), 2017 (preprint available as ZIB-Report 17-59)	PDF (ZIB-Report) BibTeX
Matthias Noack	OpenCL in Scientific High Performance Computing: The Good, the Bad, and the Ugly	Proceedings of the 5th International Workshop on OpenCL, pp. 12:1-12:3, IWOCL 2017, 2017	BibTeX DOI
Zhengji Zhao, Martijn Marsman, Florian Wende, Jeongnim Kim	Performance of Hybrid MPI/OpenMP VASP on Cray XC40 Based on Intel Knights Landing Many Integrated Core Architecture	CUG Conference Proceedings, 2017	PDF BibTeX
Florian Wende, Martijn Marsman, Zhengji Zhao, Jeongnim Kim	Porting VASP from MPI to MPI+OpenMP [SIMD]	Scaling OpenMP for Exascale Performance and Portability - 13th International Workshop on OpenMP, IWOMP 2017, Stony Brook, NY, USA, September 20-22, 2017, pp. 107-122, Vol.8766, LNCS, 2017	BibTeX DOI
Helge Knoop, Tobias Gronemeier, Matthias Sühring, Peter Steinbach, Matthias Noack, Florian Wende, Thomas Steinke, Christoph Knigge, Siegfried Raasch, Klaus Ketelsen	Porting the MPI-parallelized LES model PALM to multi-GPU systems and many integrated core processors: an experience report	International Journal of Computational Science and Engineering. Special Issue on: Novel Strategies for Programming Accelerators, 2017 (accepted for publication on 2017-04-29)	BibTeX
Tobias Kramer, Matthias Läuter, Martin Rubin, Kathrin Altwegg	Seasonal changes of the volatile density in the coma and on the surface of comet 67P/Churyumov-Gerasimenko	Monthly Notices of the Royal Astronomical Society, Vol.469, pp. S20-S28, 2017	BibTeX DOI arXiv
Farouk Salem, Florian Schintke, Thorsten Schütt, Alexander Reinefeld	Supporting various interconnects in FLESnet using Libfabric	CBM Progress Report 2016, pp. 159-160, 2017, ISBN: 978-3-9815227-4-7	BibTeX
Jose Coutinho, Mark Stillwell, Katerina Argyraki, George Ioannidis, Anca Iordache, Christoph Kleineweber, Alexandros Koliousis, John McGlone, Guillaume Pierre, Carmelo Ragusa, Peter Sanders, Thorsten Schütt, Teng Yu, Alexander Wolf	The HARNESS Platform: A Hardware- and Network-Enhanced Software System for Cloud Computing	Software Architecture for Big Data and the Cloud, Morgan Kaufmann, pp. 323-351, 2017, ISBN: 9780128054673	BibTeX
Christoph Kreisbeck, Tobias Kramer, Rafael Molina	Time-dependent wave packet simulations of transport through Aharanov–Bohm rings with an embedded quantum dot	Journal of Physics: Condensed Matter, 29(15), p. 155301, 2017	BibTeX DOI
Tobias Kramer, Mirta Rodriguez	Two-dimensional electronic spectra of the photosynthetic apparatus of green sulfur bacteria	Scientific Reports, Vol.7, p. 45245, 2017	BibTeX DOI
Jan Skrzypczak	Weakening Paxos Consensus Sequences for Commutative Commands	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2017 (preprint available as ZIB-Report 17-64)	PDF (ZIB-Report) BibTeX
2016
Robert Schmidtke, Guido Laubender, Thomas Steinke	Big Data Analytics on Cray XC Series DataWarp using Hadoop, Spark and Flink	CUG Proceedings, 2016	PDF BibTeX
Jeffrey R. Reimers, Malgorzata Biczysko, Douglas Bruce, David F. Coker, Terry J. Frankcombe, Hideki Hashimoto, Jürgen Hauer, Ryszard Jankowiak, Tobias Kramer, Juha Linnanto, Fikret Mamedov, Frank Müh, Margus Rätsep, Thomas Renger, Stenbjörn Styring, Jian Wan, Zhuan Wang, Zheng-Yu Wang-Otomo, Yu-Xiang Weng, Chunhong Yang, Jian-Ping Zhang, Arvi Freiberg, Elmars Krausz	Challenges facing an understanding of the nature of low-energy excited states in photosynthesis	BBA Bioenergetics, 1857(9), pp. 1627-1640, 2016	BibTeX DOI
Olaf Krzikalla, Florian Wende, Markus Höhnerbach	Dynamic SIMD Vector Lane Scheduling	High Performance Computing, ISC High Performance 2016 International Workshops, ExaComm, E-MuCoCoS, HPC-IODC, IXPUG, IWOPH, P^3MA, VHPC, WOPSSS, pp. 354-365, Vol.9945, LNCS, 2016	BibTeX DOI
Philippe Lieser	Ende-zu-Ende Verschlüsselung in XtreemFS	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Jens-Peter Redlich (Advisors), 2016	BibTeX
Jens Fischer	Evaluating the Scalability of Scalaris	Master's thesis, Freie Universität Berlin, Katinka Wolter, Florian Schintke (Advisors), 2016	BibTeX
Alexander Kammeyer	Evaluierung autovektorisierender Compiler anhand von Schleifenklassen	Bachelor's thesis, Freie Universität Berlin, Thomas Steinke, Katinka Wolter, Christian Maurer (Advisors), 2016	BibTeX
Carsten Weinhold, Adam Lackorzynski, Jan Bierbaum, Martin Küttler, Maksym Planeta, Hermann Härtig, Amnon Shiloh, Ely Levy, Tal Ben-Nun, Amnon Barak, Thomas Steinke, Thorsten Schütt, Jan Fajerski, Alexander Reinefeld, Matthias Lieber, Wolfgang Nagel	FFMK: A Fast and Fault-tolerant Microkernel-based System for Exascale Computing	SPPEXA Symposium 2016, 2016	BibTeX DOI
J. Fajerski, Matthias Noack, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Thomas Steinke	Fast In-Memory Checkpointing with POSIX API for Legacy Exascale-Applications	SPPEXA Symposium 2016, 2016	BibTeX DOI
Daniel Scheffler, Mike Sips, Robert Behling, Doris Dransch, Daniel Eggert, Jan Fajerski, Johann-Christoph Freytag, Patrick Griffiths, André Hollstein, Patrick Hostert, Patrick Köthur, Mathias Peters, Dirk Pflugmacher, Andreas Rabe, Alexander Reinefeld, Florian Schintke, Karl Segel	GeoMultiSens – Scalable Multisensoral Analysis of Satellite Remote Sensing Data	ESA Living Planet Symposium, EO Open Science Posters, 2016	BibTeX
Daniel Scheffler, Mike Sips, Robert Behling, Doris Dransch, Daniel Eggert, Jan Fajerski, Johann-Christoph Freytag, Patrick Griffiths, André Hollstein, Patrick Hostert, Patrick Köthur, Mathias Peters, Dirk Pflugmacher, Andreas Rabe, Alexander Reinefeld, Florian Schintke, Karl Segel	Geomultisens – a common automatic processing and analysis system for multi-sensor satellite data	Advancing Horizons for Land Cover Services Entering the Big Data Era, Second joint Workshop of the EARSeL Special Interest Group on Land Use & Land Cover and the NASA LCLUC Program, pp. 18-19, 2016	BibTeX
Thomas Zander, Marcel Dreischarf, Anne-Katrin Timm, Wolfgang Baumann, Hendrik Schmidt	Impact of material and morphological parameters on the mechanical response of the lumbar spine - A finite element sensitivity study	Journal of Biomechanics, Vol.53, pp. 185-190, 2016	BibTeX DOI
Robert Bärhold	Konzipierung und Implementierung eines Quota-Protokolls in objektbasierten Dateisystemen	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Ulf Leser (Advisors), 2016	BibTeX
Florian Wende, Martijn Marsman, Thomas Steinke	On Enhancing 3D-FFT Performance in VASP	CUG Proceedings, 2016	PDF BibTeX
Tobias Kramer, Matthias Noack	On the origin of inner coma structures observed by Rosetta during a diurnal rotation of comet 67P/Churyumov-Gerasimenko	The Astrophysical Journal Letters, 823(1), p. L11, 2016 (preprint available as ZIB-Report 16-26)	PDF (ZIB-Report) BibTeX DOI
Florian Wende, Matthias Noack, Thomas Steinke, Michael Klemm, Georg Zitzlsberger, Chris J. Newburn	*Portable SIMD Performance with OpenMP 4.x Compiler Directives**	Pierre-Francois Dutot, Denis Trystram (Eds.), Vol.Euro-Par 2016: Parallel Processing: 22nd International Conference on Parallel and Distributed Computing, LNCS, 2016, ISBN: 978-3-319-43659-3	BibTeX DOI
Tobias Kramer, Christoph Kreisbeck, Christian Riha, Olivio Chiatti, Sven Buchholz, Andreas Wieck, Dirk Reuter, Saskia Fischer	Thermal energy and charge currents in multi-terminal nanorings	AIP Advances, Vol.6, p. 065306, 2016	BibTeX DOI
2015
Florian Wende, Matthias Noack, Thorsten Schütt, Stephen Sachs, Thomas Steinke	Application Performance on a Cray XC30 Evaluation System with Xeon Phi Coprocessors at HLRN-III	Cray User Group, 2015	BibTeX
Nico Kruber, Maik Lange, Florian Schintke	Approximate Hash-Based Set Reconciliation for Distributed Replica Repair	2015 IEEE 34th International Symposium on Reliable Distributed Systems (SRDS), pp. 166-175, 2015	BibTeX DOI
Patrick Schäfer	Bag-Of-SFA-Symbols in Vector Space (BOSS VS)	ZIB-Report 15-30	PDF BibTeX URN
Stefan Andersson, Stephen Sachs, Christian Tuma, Thorsten Schütt	DataWarp: First Experiences	Cray User Group, 2015	BibTeX
Hartmut Ehrig, Claudia Ermel, Ulrike Golas, Frank Hermann	Graph and Model Transformation	Springer-Verlag Berlin Heidelberg, 2015, ISBN: 978-3-662-47979-7	BibTeX DOI
Wolfgang Baumann, Guido Laubender, Matthias Läuter, Alexander Reinefeld, Christian Schimmel, Thomas Steinke, Christian Tuma, Stefan Wollny	HLRN-III at Zuse Institute Berlin	Contemporary High Performance Computing: From Petascale toward Exascale, Volume Two, Jeffrey S. Vetter (Ed.), Chapman and Hall/CRC, pp. 81-114, 2015, ISBN: 9781498700627	BibTeX
Tobias Kramer, Matthias Noack, Daniel Baum, Hans-Christian Hege, Eric J. Heller	Homogeneous dust emission and jet structure near active cometary nuclei: the case of 67P/Churyumov-Gerasimenko	2015	BibTeX arXiv
Matthias Noack, Florian Wende, Klaus-Dieter Oertel	OpenCL: There and Back Again	High Performance Parallelism Pearls, James Reinders, Jim Jeffers (Eds.), Morgan Kaufman, Elsevier, pp. 355-378, 2015, ISBN: 978-0-12-803819-2	BibTeX
Tobias Kramer, Matthias Noack	Prevailing Dust-transport Directions on Comet 67P/Churyumov–Gerasimenko	The Astrophysical Journal Letters, 813(2), p. L33, 2015	BibTeX DOI
Christian Tuma, Joachim Sauer	Quantum chemical ab initio prediction of proton exchange barriers between CH4 and different H-zeolites	The Journal of Chemical Physics, 143(10), pp. 102810-1-102810-13, 2015	BibTeX DOI
Hermann Härtig, Satoshi Matsuoka, Frank Mueller, Alexander Reinefeld	Resilience in Exascale Computing (Dagstuhl Seminar 14402)	Dagstuhl Reports, 4(9), pp. 124-139, 2015	BibTeX DOI
Florian Wende	SIMD Enabled Functions on Intel Xeon CPU and Intel Xeon Phi Coprocessor	ZIB-Report 15-17	PDF BibTeX URN
Patrick Schäfer	Scalable Time Series Similarity Search for Data Analytics	Doctoral thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld (Advisor), 2015	BibTeX
Patrick Schäfer	Scalable time series classification	Data Mining and Knowledge Discovery, pp. 1-26, 2015	BibTeX DOI
Florian Wende, Thomas Steinke, Alexander Reinefeld	The Impact of Process Placement and Oversubscription on Application Performance: A Case Study for Exascale Computing	Proceedings of the 3rd International Conference on Exascale Applications and Software, EASC 2015, A. Gray, L. Smith, M. Weiland (Eds.), pp. 13-18, 2015, ISBN: 978 -0-9 926615 -1-9 (preprint available as ZIB-Report 15-05)	PDF PDF (ZIB-Report) BibTeX
Gabriele Taentzer, Ulrike Golas	Towards Local Confluence Analysis for Amalgamated Graph Transformation	Graph Transformations. Proceedings of ICGT 2015, F. Parisi-Presicce, B. Westfechtel (Eds.), pp. 69-86, Vol.9151, Lecture Notes in Computer Science, 2015 (preprint available as ZIB-Report 15-29)	PDF (ZIB-Report) BibTeX DOI
2014
Jens V. Fischer	A Gossiping Framework for Scalaris	Bachelor's thesis, Freie Universität Berlin, Katinka Wolter, Florian Schintke (Advisors), 2014	PDF BibTeX URN
Nico Kruber, Florian Schintke, Michael Berlin	A Relational Database Schema on the Transactional Key-Value Store Scalaris	Proceedings of 2nd Workshop on Scalable Cloud Data Management, 2014	BibTeX DOI
Matthias Noack, Florian Wende, Thomas Steinke, Frank Cordes	A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters	SC '14: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. SC14, November 16-21, 2014, New Orleans, Louisiana, USA, 2014	BibTeX DOI
Sebastian Dreßler, Thomas Steinke	An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects	Euro-Par 2013: Parallel Processing Workshops, pp. 249-258, Vol.8374, Lecture Notes in Computer Science, 2014 (preprint available as ZIB-Report 13-46)	PDF (ZIB-Report) BibTeX DOI
Florian Wende, Frank Cordes, Thomas Steinke	Concurrent Kernel Execution on Xeon Phi within Parallel Heterogeneous Workloads	Euro-Par 2014: Parallel Processing. 20th International Conference, Porto, Portugal, August 25-29, 2014, Proceedings, pp. 788-799, Vol.8632, Lecture Notes in Computer Science, 2014	BibTeX DOI
Florian Wende, Thomas Steinke, Michael Klemm, Alexander Reinefeld	Concurrent Kernel Offloading	High Performance Parallelism Pearls, James Reinders, Jim Jeffers (Eds.), Morgan Kaufman, Elsevier, 2014, ISBN: 978-0128021187 (in press)	BibTeX
Svetlana Kulagina	Distributed Multi-Stage Time Series Similarity Search	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Joachim Fischer (Advisors), 2014	BibTeX
Patrick Schäfer	Experiencing the Shotgun Distance for Time Series Analysis	Transactions on Machine Learning and Data Mining, 7(1), pp. 3-25, 2014	PDF BibTeX
Karsten Gabriel, Benjamin Braatz, Hartmut Ehrig, Ulrike Golas	Finitary M-Adhesive Categories	Mathematical Structures in Computer Science, 24(4), pp. 1-40, 2014	BibTeX DOI
Frank Hermann, Hartmut Ehrig, Ulrike Golas, Fernando Orejas	Formal Analysis of Model Transformations Based on Triple Graph Grammars	Mathematical Structures in Computer Science, 24(4), pp. 1-57, 2014	BibTeX DOI
Matthias Noack	HAM - Heterogenous Active Messages for Efficient Offloading on the Intel Xeon Phi	ZIB-Report 14-23	PDF BibTeX URN
Gunnar Ruthenberg	Hybrid Transactions for Intel’s Transactional Synchronization Extensions	Master's thesis, Humboldt-Universität zu Berlin, Thomas Steinke, Alexander Reinefeld (Advisors), 2014	BibTeX
Florian Wende, Guido Laubender, Thomas Steinke	Integration of Intel Xeon Phi Servers into the HLRN-III Complex: Experiences, Performance and Lessons Learned	CUG2014 Proceedings, 2014 (preprint available as ZIB-Report 14-15)	PDF PDF (ZIB-Report) BibTeX
Hartmut Ehrig, Ulrike Golas, A. Habel, L. Lambers, Fernando Orejas	M-Adhesive Transformation Systems with Nested Application Conditions. Part 1: Parallelism, Concurreny and Amalgamation	Mathematical Structures in Computer Science, 24(4), pp. 1-48, 2014	BibTeX DOI
Jan Fajerski	Map Reduce on Distributed Hash Tables	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2014	BibTeX
Ulrike Golas, A. Habel, Hartmut Ehrig	Multi-Amalgamation of Rules with Application Conditions in M-Adhesive Categories	Mathematical Structures in Computer Science, 24(4), pp. 1-68, 2014	BibTeX DOI
Florian Wende, Thomas Steinke, Frank Cordes	Multi-threaded Kernel Offloading to GPGPU Using Hyper-Q on Kepler Architecture	ZIB-Report 14-19	PDF BibTeX URN
Ilyas Potamitis, Patrick Schäfer	On Classifying Insects from their Wing-Beat: New Results	Ecology and acoustics: emergent properties from community to landscape, Paris, France, 2014	PDF BibTeX
Christoph Kleineweber, Alexander Reinefeld, Thorsten Schütt	QoS-aware Storage Virtualization for Cloud File Systems	Proceedings of the 1st ACM International Workshop on Programmable File Systems, pp. 19-26, PFSW '14, 2014	BibTeX DOI
Maximilian Michels	Request-Based Load Balancing in Distributed Hash Tables	Master's thesis, Freie Universität Berlin, Agnès Voisard, Florian Schintke (Advisors), 2014	BibTeX
Patrick Schäfer	The BOSS is concerned with time series classification in the presence of noise	Data Mining and Knowledge Discovery, 29(6), pp. 1505-1530, 2014	BibTeX DOI
Jens Krüger, Richard Grunzke, Sandra Gesing, Sebastian Breuers, André Brinkmann, Luis de la Garza, Oliver Kohlbacher, Martin Kruse, Wolfgang Nagel, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Charlotta Schärfe, Thomas Steinke, Tobias Schlemmer, Klaus Dieter Warzecha, Andreas Zink, Sonja Herres-Pawlis	The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations	Journal of Chemical Theory and Computation, 10(6), pp. 2232-2245, 2014	BibTeX DOI
Patrick Schäfer	Towards Time Series Classification without Human Preprocessing	MLDM 2014, pp. 228-242, Vol.8556, LNAI, 2014	BibTeX DOI
2013
Alexander Reinefeld, Thorsten Schütt, Robert Döbbelin	Analyzing the performance of SMP memory allocators with iterative MapReduce applications	Parallel Computing, 39(12), pp. 879-889, 2013	BibTeX DOI
Marie Hoffmann	Approximate Algorithms for Distributed Systems	Master's thesis, Freie Universität Berlin, Thorsten Schütt, Katinka Wolter (Advisors), 2013	PDF PDF BibTeX URN
Sebastian Dreßler, Thomas Steinke	Automated Analysis of Complex Data Objects	28th International Supercomputing Conference, ISC 2013, Leipzig, Germany, June 16-20, 2013, 2013	BibTeX
Robert Döbbelin, Thorsten Schütt, Alexander Reinefeld	Building Large Compressed PDBs for the Sliding Tile Puzzle	Workshop on Computer Games, 2013 (preprint available as ZIB-Report 13-21)	PDF (ZIB-Report) BibTeX
Fernando Orejas, Artur Boronat, Ulrike Golas, Nikos Mylonakis	Checking Bisimilarity for Attributed Graph Transformation	Foundations of Software Science and Computation Structures. Proceedings of FOSSACS 2013, Frank Pfenning (Ed.), pp. 113-128, Vol.7794, LNCS, 2013	BibTeX DOI
Kathrin Sobe	Consistency and Fault Tolerance of Distributed Storage Systems	Doctoral thesis, Humboldt-Universität zu Berlin, 2013	BibTeX
Michael Berlin	Consistent and Partition-Tolerant File Replication in the Cloud File System Xtreem FS	Praxis der Informationsverarbeitung und Kommunikation, 36(1), p. 39, 2013	BibTeX DOI
Florian Wende	Dynamic Load Balancing on Massively Parallel Computer Architectures	Bachelor's thesis, Freie Universität Berlin, Helmut Alt, Alexander Reinefeld, Thomas Steinke (Advisors), 2013	PDF BibTeX URN
Magnus Müller	Flexible Routing Tables in a Distributed Key-Value Store	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2013	PDF BibTeX URN
Thorsten Schütt, Robert Döbbelin, Alexander Reinefeld	Forward Perimeter Search with Controlled Use of Memory	International Joint Conference on Artificial Intelligence, IJCAI-13, Beijing, 2013	PDF BibTeX
Uwe Reinbacher	Implementierung und Evaluierung eines FPGA-basierten statischen Paketfilters	Master's thesis, Humboldt-Universität zu Berlin, 2013	BibTeX
Johannes Dillmann	Konsistentes Hinzufügen und Entfernen von Replikaten in XtreemFS	Bachelor's thesis, Freie Universität Berlin, Florian Schintke, Katinka Wolter (Advisors), 2013	PDF BibTeX URN
Lukas Kairies	Leistungsanalyse von XtreemFS als Ersatz für HDFS in Hadoop	Bachelor's thesis, Freie Universität Berlin, Florian Schintke, Katinka Wolter (Advisors), 2013	PDF BibTeX URN
Harry Enke, Norman Fiedler, Thomas Fischer, Timo Gnadt, Erik Ketzan, Jens Ludwig, Torsten Rathmann, Gabriel Stöckle, Florian Schintke	Leitfaden zum Forschungsdaten-Management	Leitfaden zum Forschungsdaten-Management, Harry Enke, Jens Ludwig (Eds.), Verlag Werner Hülsbusch, Glückstadt, 2013	PDF BibTeX
Christian Tuma, Teodoro Laino, Elyette Martin, Steffen Stolz, Alessandro Curioni	Modeling the Impact of Solid Surfaces in Thermal Degradation Processes	ChemPhysChem, Vol.14, pp. 88-91, 2013	BibTeX DOI
Igor Merkulow	Parameter selection and evaluation for programming of heterogeneous architectures	Master's thesis, Freie Universität Berlin, 2013	BibTeX
Mikael Högqvist, Alexander Reinefeld	RECODE: Reconfigurable, Consistent and Decentralized Data Services	IEEE International Conference on Peer-to-Peer Computing (P2P’13), pp. 1-10, 2013	BibTeX DOI
Patrick Schäfer, Sebastian Dreßler	Shooting Audio Recordings of Insects with SFA	AmiBio Workshop, Bonn, Germany, 2013	BibTeX
Jan Stender	Snapshots in Large-Scale Distributed File Systems	Doctoral thesis, Humboldt-Universität zu Berlin, 2013	PDF BibTeX
Stefan Keidel	Snapshots in Scalaris	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Florian Schintke (Advisors), 2013	PDF BibTeX URN
	Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing	Journal of Parallel and Distributed Computing, 73(11), pp. 1415-1416, Simon McIntosh-Smith, Charles Gillan, Nico Sanna, Stan Scott, Thomas Steinke (Eds.), 2013	BibTeX DOI
Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang Nagel, Malcolm Atkinson, Jens Krüger	Standards-based metadata management for molecular simulations	Concurrency and Computation: Practice and Experience, 2013	BibTeX DOI
Florian Wende, Thomas Steinke	Swendsen-Wang Multi-Cluster Algorithm for the 2D/3D Ising Model on Xeon Phi and GPU	Proceeding SC '13 Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis Article No. 83 ACM New York, NY, USA, 2013, 2013 (preprint available as ZIB-Report 13-44)	PDF (ZIB-Report) BibTeX DOI
F. Ries, M. Ditze, A. Piater, E. Singer, V. Fäßler, Sebastian Dreßler, T. Soddemann	Tool-Supported Integration of Hardware Acceleration in Automotive CFD-Simulations	NAFEMS 2013 Proceedings, 2013	BibTeX
Florian Schintke	XtreemFS & Scalaris	Science & Technology, pp. 54-55, 2013	BibTeX
Jan Stender, Michael Berlin, Alexander Reinefeld	XtreemFS – a File System for the Cloud	Data Intensive Storage Services for Cloud Environments, D. Kyriazis, A. Voulodimos, S. Gogouvitis, Theodora A. Varvarigou (Eds.), IGI Global, 2013	BibTeX DOI
Wolfgang Pyszkalski	Übersicht über die Datenhaltung im ZIB und die Möglichkeiten einer Nutzung durch Projekte	ZIB-Report 13-16	PDF BibTeX URN
2012
S. Kindermann, Florian Schintke, B. Fritzsch	A Collaborative Data Management Infrastructure for Climate Data Analysis	Geophysical Research Abstracts, Vol.14, EGU2012-10569, 2012	BibTeX DOI
Richard Grunzke, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ralph Müller-Pfefferkorn, Patrick Schäfer, Bernd Schuller, Thomas Steinke, Andreas Zink	A Data Driven Science Gateway for Computational Workflows	Proceedings of the UNICORE Summit, 2012	BibTeX
Ulrike Golas	A General Attribution Concept for Models in M- adhesive Transformation Systems: Long Version	ZIB-Report 12-22 (A short version appeared in: Graph Transformation, 6th International Conference, ICGT 2012, Bremen, Germany, September 24-29, 2012, Proceedings. Lecture Notes in Computer Science, Vol. 7562 . 2012. Pp.187-202)	PDF BibTeX URN DOI
Ulrike Golas	A General Attribution Concept for Models in M-Adhesive Transformation Systems	Proceedings of ICGT 2012, Hartmut Ehrig, G. Engels, H.-J. Kreowski, G. Rozenberg (Eds.), pp. 187-202, Vol.7562, LNCS, 2012	BibTeX DOI
T. Soboll, Ulrike Golas	A Local-Global Model for Multiagent Systems - Sheaves on the Category MAS	Proceedings of ICAART 2012, J. Filipe, A. Fred (Eds.), pp. 331-334, Vol.2, 2012	BibTeX
Sebastian Dreßler, Thomas Steinke	A Novel Hybrid Approach to Automatically Determine Kernel Interface Data Volumes	ZIB-Report 12-23	PDF BibTeX URN
Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke	A Science Gateway Getting Ready for Serving the International Molecular Simulation Community	Proceedings of Science, Vol.PoS(EGICF12-EMITC2)050, 2012	BibTeX
Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Akos Balasko, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Peter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher	A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics	Journal of Grid Computing, 2012	BibTeX
Björn Kolbeck	A fault-tolerant and scalable protocol for replication in distributed file systems	Doctoral thesis, Humboldt-Universität zu Berlin, 2012	BibTeX
Robert Döbbelin, Thorsten Schütt, Alexander Reinefeld	An Analysis of SMP Memory Allocators	Proceedings of the 41st International Conference on Parallel Processing Workshops (Fifth International Workshop on Parallel Programming Models and Systems Software for High-End Computing (P2S2)), pp. 48-54, 2012	BibTeX DOI
Kathrin Peter, Peter Sobe	Application of Regenerating Codes for Fault Tolerance in Distributed Storage Systems	Network Computing and Applications (NCA), 2012 11th IEEE International Symposium on, pp. 67-70, 2012	BibTeX DOI
Ulrike Golas, L. Lambers, Hartmut Ehrig, Fernando Orejas	Attributed Graph Transformation with Inheritance	Theoretical Computer Science, Vol.424, pp. 46-68, 2012	BibTeX DOI
Kathrin Peter, Alexander Reinefeld	Consistency and fault tolerance for erasure-coded distributed storage systems	Proceedings of the fifth international workshop on Data-Intensive Distributed Computing Date, pp. 23-32, DIDC ’12, 2012	BibTeX DOI
Mikael Högqvist	Consistent Key-Based Routing in Decentralized and Reconfigurable Data Services	Doctoral thesis, Humboldt-Universität zu Berlin, 2012	BibTeX URN
Maik Lange	Effiziente Reparatur von Repliken in Distributed Hash Tables	Master's thesis, Humboldt-Universität zu Berlin, 2012	PDF BibTeX URN
Sebastian Dreßler, Thomas Steinke	Energy consumption of CUDA kernels with varying thread topology	Computer Science - Research and Development, pp. 1-9, 2012	BibTeX DOI
Philipp Borgers	Erweiterung eines verteilten Key-Value-Stores (Riak) um einen räumlichen Index	Bachelor's thesis, Freie Universität Berlin, 2012	BibTeX
Harry Enke, Adrian Partl, Alexander Reinefeld, Florian Schintke	Handling Big Data in Astronomy and Astrophysics	Datenbank-Spektrum, 12(3), pp. 173-181, 2012	BibTeX DOI
Khaled Benkrid, Esam El-Araby, Miaoqing Huang, Kentaro Sano, Thomas Steinke	High-Performance Reconfigurable Computing - editorial for Special Issue of the International Journal of Reconfigurable Computing	International Journal of Reconfigurable Computing, Vol.2012, pp. 1-2, 2012	BibTeX DOI
Hartmut Ehrig, Ulrike Golas, A. Habel, L. Lambers, Fernando Orejas	M-Adhesive Transformation Systems with Nested Application Conditions. Part 2	Fundamenta Informaticae, 118(1-2), pp. 35-63, 2012	BibTeX DOI
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior	MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment	Journal of Cheminformatics, 4(Suppl 1), p. 21, 2012	BibTeX DOI
Florian Wende, Frank Cordes, Thomas Steinke	On Improving the Performance of Multi-threaded CUDA Applications with Concurrent Kernel Execution by Kernel Reordering	Application Accelerators in High Performance Computing (SAAHPC), 2012 Symposium on, pp. 74-83, 2012	BibTeX DOI
R. Heckel, Hartmut Ehrig, Ulrike Golas, Frank Hermann	Parallelism and Concurrency of Stochastic Graph Transformations	Proceedings of ICGT 2012, Hartmut Ehrig, G. Engels, H.-J. Kreowski, G. Rozenberg (Eds.), pp. 96-110, Vol.7562, LNCS, 2012	BibTeX DOI
	Proceedings of ACCAT 2012	Electronic Proceedings in Theoretical Computer Science 93, Ulrike Golas, T. Soboll (Eds.), 2012	BibTeX DOI
T. Flik, Alexander Reinefeld	Rechnerorganisation	Hütte – Das Ingenieurwissen, Horst Czichos, Manfred Hennecke (Eds.), Springer-Verlag Berlin, 34, pp. J6-J124, 2012	BibTeX
Patrick Schäfer, Mikael Högqvist	SFA : a symbolic fourier approximation and index for similarity search in high dimensional datasets	Proceedings of the 15th International Conference on Extending Database Technology, pp. 516-527, EDBT ’12, 2012	BibTeX DOI
Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, Andre Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke	The MoSGrid Community – From National to International Scale	EGI Community Forum 2012, 2012	BibTeX
Ulrike Golas, L. Lambers, Hartmut Ehrig, H. Giese	Towards Bridging the Gap between Formal Foundations and Current Practice for Triple Graph Grammars - Flexible Relations between Source and Target Elements	Proceedings of ICGT 2012, Hartmut Ehrig, G. Engels, H.-J. Kreowski, G. Rozenberg (Eds.), pp. 141-155, Vol.7562, LNCS, 2012	BibTeX DOI
Felix Langner	Überlastungsschutz mit Anfragepriorisierung für das Internetdateisystem XtreemFS	Master's thesis, Freie Universität Berlin, 2012	BibTeX
2011
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior	A Molecular Simulation Grid as new tool for Computational Chemistry, Biology and Material Science	Journal of Cheminformatics 2011, 3(Suppl 1), 2011	BibTeX DOI
Sandra Gesing, Peter Kacsuk, Miklos Kozlovszky, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Richard Grunzke, Sonja Herres-Pawlis, Jens Krüger, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Anna Szikszay Fabri, Klaus Dieter Warzecha, Martin Wewior, Oliver Kohlbacher	A Science Gateway for Molecular Simulations	EGI (European Grid Infrastructure) User Forum 2011, Book of Abstracts, pp. 94-95, 2011	BibTeX
Ulrike Golas, E. Biermann, Hartmut Ehrig, Claudia Ermel	A Visual Interpreter Semantics for Statecharts Based on Amalgamated Graph Transformation	ECEASST, Vol.39, pp. 1-24, 2011	BibTeX
Harry Enke, Matthias Steinmetz, Hans-Martin Adorf, Alexander Beck-Ratzka, Frank Breitling, Thomas Brüsemeister, Arthur Carlson, Torsten Ensslin, Mikael Högqvist, Iliya Nickelt, Thomas Radke, Alexander Reinefeld, Angelika Reiser, Tobias Scholl, Rainer Spurzem, Jürgen Steinacker, Wolfgang Voges, Joachim Wambsganß, Steve White	AstroGrid-D: Grid technology for astronomical science	New Astronomy, 16(2), pp. 79-93, 2011	BibTeX DOI
Björn Kolbeck, Mikael Högqvist, Jan Stender, Felix Hupfeld	Flease - Lease Coordination Without a Lock Server	Parallel and Distributed Processing Symposium, International, Vol.0, pp. 978-988, 2011	BibTeX DOI
Ulrike Golas, Hartmut Ehrig, Frank Hermann	Formal Specification of Model Transformations by Triple Graph Grammars with Application Conditions	ECEASST, Vol.39, pp. 1-26, 2011	BibTeX
Ulrike Golas, Kathrin Hoffmann, Hartmut Ehrig, A. Rein, J. Padberg	Functorial Analysis of Algebraic Higher-Order Net Systems with Applications to Mobile Ad-Hoc Networks	ECEASST, Vol.40, pp. 1-20, 2011	BibTeX
Sebastian Borchert	Generische Templates zur Kommunikation in heterogenen Manycore-Systemen	Master's thesis, Humboldt-Universität zu Berlin, 2011	BibTeX
Sandra Gesing, Richard Grunzke, Akos Balasko, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Peter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher	Granular Security for a Science Gateway in Structural Bioinformatics	Proc. IWSG-Life 2011, 2011	BibTeX
F. Chabarek, Ulrike Golas	Interaktive Vervollständigung der Szenariobasierten Spezifikation eines Parkassistenzsystems	Proceedings of GI-ASE 2011, H.-U. Heiß, P. Pepper, H. Schlingloff, Jörg Schneider (Eds.), GI-Edition LNI, 2011	BibTeX
Bert Münnich	Kürzeste-Wege-Suche mit Grafikkarten	Master's thesis, Humboldt-Universität zu Berlin, 2011	BibTeX
Stefan Plantikow, Maik Jorra	Latency-Optimal Walks in Replicated and Partitioned Graphs	Database Systems for Adanced Applications, Jianliang Xu, Ge Yu, Shuigeng Zhou, Rainer Unland (Eds.), Springer Berlin / Heidelberg, pp. 14-27, 2011	BibTeX DOI
Thorsten Schütt, Alexander Reinefeld, Robert Döbbelin	MR-search: massively parallel heuristic search	Concurrency and Computation: Practice and Experience, 25(1), pp. 40-54, 2011	BibTeX DOI
Robert Maier	Massiv-parallele Suche und effiziente Heuristiken	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld (Advisor), 2011	PDF BibTeX URN
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Johannes Schuster, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior	MoSGrid: Progress of Workflow driven Chemical Simulations	Proc. of Grid Workflow Workshop 2011, Cologne, Germany, Vol.826, 2011	BibTeX
Michael Berlin	Popularitätsbasierte Anpassung des Replikationsfaktors in verteilten Dateisystemen	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld (Advisor), 2011	BibTeX
Kathrin Peter	Reliability Study of Coding Schemes for Wide-Area Distributed Storage Systems	PDP 2011: The 19th Euromicro International Conference on Parallel, Distributed and Network-Based Computing, 2011	BibTeX DOI
Frank Dickmann, Jürgen Falkner, Wilfried Gunia, Jochen Hampe, Michael Hausmann, Alexander Herrmann, Nick Kepper, Tobias Knoch, Svenja Lauterbach, Jörg Lippert, Kathrin Peter, Eberhard Schmitt, Ulrich Schwardmann, Juri Solodenko, Dietmar Sommerfeld, Thomas Steinke, Anette Weisbecker, Ulrich Sax	Solutions for biomedical grid computing – Case studies from the D-Grid project Services@MediGRID	Journal of Computational Science, -(0), 2011	BibTeX DOI
Nico Kruber, Mikael Högqvist, Thorsten Schütt	The Benefits of Estimated Global Information in DHT Load Balancing	Cluster Computing and the Grid, IEEE International Symposium on, Vol.0, pp. 382-391, 2011	BibTeX DOI
2010
Jan Stender, Björn Kolbeck, Mikael Högqvist, Felix Hupfeld	BabuDB: Fast and Efficient File System Metadata Storage	Storage Network Architecture and Parallel I/Os, IEEE International Workshop on, pp. 51-58, 2010	BibTeX DOI
Joos-Hendrik Böse, Artur Andrzejak, Mikael Högqvist	Beyond online aggregation: Parallel and incremental data mining with online Map-Reduce	Proceedings of the 2010 Workshop on Massive Data Analytics on the Cloud, pp. 3:1-3:6, MDAC ’10, 2010	BibTeX DOI
T. Schmidt-Goenner, A. Guerler, Björn Kolbeck, E. Knapp	Circular permuted proteins in the universe of protein folds	Proteins, Vol.78, pp. 1618-1630, 2010	BibTeX DOI
Artur Andrzejak, Derrick Kondo, Sangho Yi	Decision Model for Cloud Computing under SLA Constraints	Modeling, Analysis & Simulation of Computer and Telecommunication Systems (MASCOTS), 2010 IEEE International Symposium on, pp. 257-266, 2010	BibTeX DOI
Thomas Steinke, Kathrin Peter, Sebastian Borchert	Efficiency Considerations of Cauchy Reed-Solomon Implementations on Accelerator and Multi-Core Platforms	Symposium on Application Accelerators in High Performance Computing (SAAHPC), 2010	BibTeX
Florian Schintke, Alexander Reinefeld, Seif Haridi, Thorsten Schütt	Enhanced Paxos Commit for Transactions on DHTs	CCGRID, pp. 448-454, 2010 (preprint available as ZIB-Report 09-28)	PDF (ZIB-Report) BibTeX DOI
Artur Andrzejak, Derrick Kondo, David Anderson	Exploiting non-dedicated resources for cloud computing	12th IEEE/IFIP Network Operations & Management Symposium (NOMS 2010), pp. 341-348, 2010	BibTeX DOI
Björn Kolbeck, Mikael Högqvist, Jan Stender, Felix Hupfeld	Fault-Tolerant and Decentralized Lease Coordination in Distributed Systems	ZIB-Report 10-02	PDF BibTeX URN
Zully Ritter, Wolfgang Baumann, Dieter Felsenberg	In vivo tibial compressive stiffness variations after HR-pQCT measurements of 60 days immobility during the Berlin bed rest study II using μfinite element analysis	6th World Congress of Biomechanics (WCB 2010), August 1-6, 2010 Singapore: In Conjunction with 14th International Conference on Biomedical Engineering (ICBME) and 5th Asia Pacific Conference on Biomechanics (APBiomech), pp. 823-826, Vol.31, IFMBE Proceedings, 2010	BibTeX DOI
Jan Stender, Mikael Högqvist, Björn Kolbeck	Loosely Time-Synchronized Snapshots in Object-Based File Systems	Proceedings of the 29th IEEE International Performance, Computing, and Communications Conference, 2010	BibTeX DOI
Florian Schintke	Management verteilter Daten in Grid- und Peer-to-Peer-Systemen	Doctoral thesis, Humboldt-Universität zu Berlin, 2010	BibTeX
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, I. d. Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior	MoSGrid – A Molecular Simulation Grid as a new tool in Computational Chemistry, Biology and Material Science	6. German Conference on Chemoinformatics, 2010	BibTeX
Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior	Molecular Simulation Grid	6. German Conference on Chemoinformatics, 2010	BibTeX
Matthias Beick	On-Line Processing of Streams and Time Series – An Evaluation	Master's thesis, Humboldt-Universität zu Berlin, 2010	BibTeX
Alexander Ziegler, Malte Ogurreck, Thomas Steinke, Felix Beckmann, Steffen Prohaska, Andreas Ziegler	Opportunities and challenges for digital morphology	Biology Direct, 5(1), p. 45, 2010	BibTeX DOI
Patrick May, A. Kreuchwig, Thomas Steinke, Ina Koch	PTGL: a database for secondary structure-based protein topologies	Nucleic Acids Res., Vol.38, pp. D326-330, 2010	BibTeX
Adriana Iamnitchi, Paolo Trunfio, Jonathan Ledlie, Florian Schintke	Peer-to-Peer Computing	Euro-Par 2010 - Parallel Processing, pp. 444-445, Vol.6271, LNCS, 2010	BibTeX DOI
Dagmar Krefting, Ralf Lützkendorf, Kathrin Peter, Johannes Bernarding	Performance Analysis of Diffusion Tensor Imaging in an Academic Production Grid	CCGRID, pp. 751-756, 2010	BibTeX DOI
Uwe Schwiegelshohn, Rosa M. Badia, Marian Bubak, Marco Danelutto, Schahram Dustdar, Fabrizio Gagliardi, Alfred Geiger, Ladislav Hluchy, Dieter Kranzlmüller, Erwin Laure, Alexander Reinefeld, Michael Resch, Andreas Reuter, Otto Rienhoff, Thomas Rüter, Peter Sloot, Domenico Talia, Klaus Ullmann, Ramin Yahyapour, Gabriele von Voigt	Perspectives on Grid Computing	Future Generation Computer Systems, 26(8), pp. 1104-1115, 2010	BibTeX DOI
Thorsten Schütt	Range queries in distributed hash tables	Doctoral thesis, Humboldt-Universität zu Berlin, 2010	BibTeX
Sangho Yi, Derrick Kondo, Artur Andrzejak	Reducing Costs of Spot Instances via Checkpointing in the Amazon Elastic Compute Cloud	Cloud Computing (CLOUD), 2010 IEEE 3rd International Conference on, pp. 236-243, 2010	BibTeX DOI
Joanna Geibig, Dirk Bradler	Self-organized aggregation in irregular wireless networks	Proceedings of the 3rd IFIP Wireless Days Conference 2010, pp. 1-7, 2010	BibTeX DOI
Florian Wende	Simulation of Spin Models on Nvidia Graphics Cards using CUDA	Master's thesis, Humboldt-Universität zu Berlin, Ulrich Wolff, Michael Müller-Preussker, Hinnerk Stüben (Advisors), 2010	BibTeX
P. Van Roy, Seif Haridi, Alexander Reinefeld, J. B. Stefani	The Clouds of Revolution	Public Service Review 19, pp. 449, 2010	BibTeX
Alexander Reinefeld, Thorsten Schütt, Robert Döbbelin	Very large pattern databases for heuristic search	HPDC, Salim Hariri, Kate Keahey (Eds.), pp. 803-809, 2010	BibTeX DOI
2009
Björn Kolbeck	A Protocol for Efficient and Fault-tolerant File Replication over Wide-Area Networks	TCPP Ph.D. Forum, Int. Parallel and Distributed Processing Symposium, Vol.0, p. 19, 2009	BibTeX DOI
Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Seif Haridi	A Scalable, Transactional Data Store for Future Internet Services	Towards the Future Internet - A European Research Perspective, G. Tselentis, J. Domingue, A. Galis, A. Gavras, D. Hausheer, S. Krco, V. Lotz, T. Zahariadis (Eds.), IOS Press, pp. 148-159, 2009	BibTeX DOI
Mikael Högqvist	Architecture and Self-Tuning of a DISC-system	TCPP Ph.D. Forum, Int. Parallel and Distributed Processing Symposium, p. 16, 2009	BibTeX DOI
Felix Hupfeld	Causal weak-consistency replication – a systems approach	Doctoral thesis, Humboldt-Universität zu Berlin, 2009	BibTeX URN
Thomas Röblitz	Co-Reservation of Resources in the Grid	Doctoral thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Miroslaw Malek, H.-U. Heiß (Advisors), 2009, ISBN: 978-3-86853-137-4	PDF BibTeX URN
Georg Birkenheuer, Arthur Carlson, Alexander Fölling, Mikael Högqvist, Andreas Hoheisel, Alexander Papaspyrou, Klaus Rieger, Bernhard Schott, Wolfgang Ziegler	Connecting Communities on the Meta-Scheduling Level: The DGSI Approach	Proceedings of the Cracow Grid Workshop (CGW), pp. 96-103, 2009	BibTeX
Nico Kruber	DHT Load Balancing with Estimated Global Information	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Miroslaw Malek (Advisors), 2009	PDF BibTeX URN
Frank Hertel, Dagmar Krefting, Ralf Lützkendorf, Fred Viezens, Andreas Thiel, Kathrin Peter, Johannes Bernarding	Diffusions-Tensor-Imaging als Gridanwendung - Perfomanzsteigerung und standortunabhängiger Zugang zu leistungsfähigen Ressourcen	GI Jahrestagung’09, pp. 1233-1240, 2009	BibTeX
Kathrin Peter	Distributed Erasure Tolerant Storage with Solid State Technology	TCPP Ph.D. Forum, Int. Parallel and Distributed Processing Symposium, p. 23, 2009	BibTeX DOI
Jan Stender	Efficient Management of Consistent Backups in a Distributed File System	COMPSAC (1), pp. 656-659, 2009	BibTeX DOI
Christian von Prollius	Ein Peer-to-Peer System mit Bereichsabfragen in PlanetLab	Master's thesis, Freie Universität Berlin, Jochen Schiller, Alexander Reinefeld (Advisors), 2009	PDF BibTeX URN
Roland Tuschl	Ein Userspace-Dateisystem zur Verwaltung von Grid-Daten	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Jens-Peter Redlich (Advisors), 2009	PDF BibTeX URN
Marie Hoffmann	Ein agglomeratives, gossipbasiertes Clustering-Verfahren für verteilte Systeme implementiert in Scalaris	Bachelor's thesis, Freie Universität Berlin, 2009	BibTeX
Daniel Mauter	Ein eingebettetes Hauptspeicher-Datenbanksystem mit Snapshot-Reads	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Jens-Peter Redlich (Advisors), 2009	PDF BibTeX URN
Felix Hupfeld, Björn Kolbeck, Jan Stender, Mikael Högqvist, Toni Cortes, Jonathan Martí, Jesus Malo	FaTLease: scalable fault-tolerant lease negotiation with Paxos	Cluster Computing, 12(2), pp. 175-188, 2009	BibTeX DOI
Raphael Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz Bujnicki, Robert Preissner	Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors	Algorithms, 2(2), pp. 692-709, 2009	BibTeX DOI
Stefan Plantikow, Kathrin Peter, Mikael Högqvist, Christian Grimme, Alexander Papaspyrou	Generalizing the Data Management of Three Community Grids	Future Generation Computer Systems (FGCS), 25(3), pp. 281-289, 2009	BibTeX DOI
Artur Andrzejak	Generic Self-Healing via Rejuvenation: Challenges, Status Quo, and Solutions	Workshop on Architectures and Languages for Self-Managing Distributed Systems (SelfMan@SASO), 2009	BibTeX
Thorsten Schütt, Alexander Reinefeld, Florian Schintke, Marie Hoffmann	Gossip-based Topology Inference for Efficient Overlay Mapping on Data Centers	Peer-to-Peer Computing, pp. 147-150, 2009	BibTeX DOI
Alexander Reinefeld	Heuristic Search	Encyclopedia of Optimization, pp. 1506-1508, Christodoulos Floudas, Panos Pardalos (Eds.), Springer, 2009	BibTeX DOI
Artur Andrzejak, Demetris Zeinalipour, Marios Dikaiakos	Improving the Dependability of Grids via Short-Term Failure Predictions	CoreGRID Workshop at EuroPAR 2009, 2009	BibTeX
Christian Lorenz	Leistungsverbesserung der Datenübertragung bei der Replikation von nicht veränderlichen Dateien in einem verteilten Dateisystem	Master's thesis, Technische Universität Berlin, 2009	BibTeX
Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michael Vossberg, Fred Viezens, Anette Weisbecker	MediGRID: Towards A User Friendly Secured Grid Infrastructure	Future Generation Computer Systems (FGCS), 25(3), pp. 281-289, 2009	BibTeX DOI
Alexander Reinefeld, Thorsten Schütt	Out-of-Core Parallel Frontier Search with MapReduce	HPCS, pp. 323-336, Vol.5976, Lecture Notes in Computer Science, 2009	BibTeX DOI
Alexander Reinefeld	Parallel Heuristic Search	Encyclopedia of Optimization, Christodoulos Floudas, Panos Pardalos (Eds.), Springer, pp. 2908-2912, 2009	BibTeX DOI
Mikael Högqvist, Nico Kruber	Passive/Active Load Balancing with Informed Node Placement in DHTs	IWSOS, Thrasyvoulos Spyropoulos, Karin Hummel (Eds.), pp. 101-112, Vol.5918, Lecture Notes in Computer Science, 2009	BibTeX DOI
Ralf Lützkendorf, Fred Viezens, Frank Hertel, Dagmar Krefting, Kathrin Peter, Johannes Bernarding	Performanzsteigerung von Diffusion Tensor Image Analyse durch Nutzung gridbasierter Workflows	GMDS, 2009	BibTeX DOI
Thorsten Schütt, Alexander Reinefeld, Florian Schintke, C. Hennig	Self-Adaptation in Large-Scale Systems: A Study on Structured Overlays Across Multiple Datacenters	Architectures and Languages for Self-Managing Distributed Systems (SelfMan@SASO), 2009	BibTeX DOI
Wolfgang Gentzsch, Alexander Reinefeld	Special Section D-Grid	Future Generation Comp. Syst., 25(3), pp. 266-267, 2009	BibTeX DOI
Mikael Högqvist, Stefan Plantikow	Towards Explicit Data Placement in Scalable Key/Value Stores	Architectures and Languages for Self-Managing Distributed Systems (SelfMan@SASO), 2009	BibTeX
Monika Moser, Seif Haridi, Tallat Shafaat, Thorsten Schütt, Mikael Högqvist, Alexander Reinefeld	Transactional DHT Algorithms	ZIB-Report 09-34	PDF BibTeX URN
Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias Knoch, Ulrich Sax	Visualization in Health Grid Environments: A Novel Service and Business Approach	GECON, pp. 150-159, Vol.5745, Lecture Notes in Computer Science, 2009	BibTeX DOI
Ada Casanovas, Javier Alonso, Jordi Torres, Artur Andrzejak	Work in Progress: Building a Distributed Generic Stress Tool for Server Performance and Behavior Analysis	ICAS, pp. 342-345, 2009	BibTeX DOI
2008
Domenico Talia, Paolo Trunfio, Jingdi Zeng, Mikael Högqvist	A Peer-to-Peer Framework for Resource Discovery in Large-Scale Grids	Achievements in European Research on Grid Systems, Sergei Gorlatch, Marian Bubak, Thierry Priol (Eds.), Springer US, pp. 123-137, 2008	BibTeX DOI
Thorsten Schütt, Monika Moser, Stefan Plantikow, Florian Schintke, Alexander Reinefeld	A Transactional Scalable Distributed Data Store	1st IEEE International Scalable Computing Challenge, co-located with CCGrid’08, 2008	BibTeX
Jörg Schneider, Julius Gehr, Barry Linnert, Thomas Röblitz	An Efficient Protocol for Reserving Multiple Grid Resources in Advance	Proceedings of the 3$^rd$ CoreGRID Workshop on Grid Middleware, 2008	BibTeX
Stefan Plantikow, Mikael Högqvist	Continous Queries over Federated Social Networks	Fourth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS 2008), 2008	BibTeX
Artur Andrzejak, Derrick Kondo, David Anderson	Ensuring Collective Availability in Volatile Resource Pools via Forecasting	19th IEEE/IFIP Distributed Systems: Operations and Management (DSOM-2008), pp. 149-161, 2008	BibTeX
Felix Hupfeld, Björn Kolbeck, Jan Stender, Mikael Högqvist, Toni Cortes, Jonathan Martí, Jesus Malo	FaTLease: Scalable Fault-Tolerant Lease Negotiation with Paxos	ACM/IEEE International Symposium on High Performance Distributed Computing (HPDC), 2008	BibTeX
Peter Sobe, Kathrin Peter	Flexible Parameterization of XOR based Codes for Distributed Storage	Proceedings of The Seventh IEEE International Symposium on Networking Computing and Applications, NCA 2008, July 10-12, 2008, Cambridge, Massachusetts, USA, pp. 101-110, 2008	BibTeX DOI
Thomas Röblitz	Global Optimization for Scheduling Multiple Co-Reservations in the Grid	Proceedings of the CoreGRID Symposium 2008, 2008	BibTeX
Artur Andrzejak, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Carlo Mastroianni, Paraskevi Fragopoulou, Derrick Kondo, Paul Malecot, Gheorghe Cosmin Silaghi, Luis Moura Silva, Paolo Trunfio, Demetris Zeinalipour-Yazti, Eugenio Zimeo	Grid Architectural Issues: State-of-the-art and Future Trends	Institute on Architectural Issues: Scalability, Dependability, Adaptability, CoreGRID - Network of Excellence, 2008	BibTeX
Tallat Shafaat, Monika Moser, Ali Ghodsi, Thorsten Schütt, Seif Haridi, Alexander Reinefeld	Key-Based Consistency and Availability in Structured Overlay Networks	International ICST Conference on Scalable Information Systems, 2008	BibTeX
Tallat Shafaat, Monika Moser, Ali Ghodsi, Thorsten Schütt, Alexander Reinefeld	On Consistency of Data in Structured Overlay Networks	Coregrid Integration Workshop, 2008	BibTeX
Derrick Kondo, Artur Andrzejak, David Anderson	On Correlated Availability in Internet-Distributed Systems	9th IEEE/ACM International Conference on Grid Computing (Grid 2008), 2008	BibTeX
Mohammed Allalen, Matthias Brehm, Hinnerk Stüben	Performance of Quantum Chromodynamics (QCD) Simulations on the SGI Altix	ZIB-Report 08-54 (Appeared in: Computational Methods in Science and Technology 14(2) (2008) 69-75)	PDF BibTeX URN
Thorsten Schütt, Florian Schintke, Alexander Reinefeld	Range Queries on structured overlay networks	Computer Communications, 31(2), pp. 280-291, 2008	BibTeX DOI
Thorsten Schütt, Florian Schintke, Alexander Reinefeld	Scalaris: Reliable Transactional P2P Key/Value	ERLANG '08: Proceedings of the 7th ACM SIGPLAN workshop on ERLANG, pp. 41-47, 2008	BibTeX DOI
P. Roy, Seif Haridi, Alexander Reinefeld, J. B. Stefani, R. Yap, T. Coupaye	Self Management for Large-Scale Distributed Systems	Formal Methods for Components and Objects 2007 (FMCO 2007), 2008	BibTeX
Dagmar Krefting, Sebastian Canisius, Kathrin Peter, Thomas Tolxdorff, Thomas Penzel	Signalanalyse von Polysomnographien unter Verwendung einer Gridinfrastruktur	GMDS 2008, 2008	BibTeX
Thomas Streuer, Hinnerk Stüben	Simulations of QCD in the Era of Sustained Tflop/s Computing	ZIB-Report 07-48 (Appeared in C. Bischof, M. Brückner, P. Gibbon, G. Goubert, T. Lippert, B. Mohr, F. Peters (Eds.), Parallel Computing: Architectures, Algorithms and Applications, NIC Series, Vol. 38 (2007), 535--542.)	PDF BibTeX URN
Paolo Costa, Guillaume Pierre, Alexander Reinefeld, Thorsten Schütt, Maarten van Steen	Sloppy Management of Structured P2P Services	Proceedings of the 3$^rd$ International Workshop on Hot Topics in Autonomic Computing (HotAC III), co-located with IEEE ICAC’08, 2008	BibTeX
Thomas Röblitz	Specifying and Processing Co-Reservations in the Grid	Proceedings of the 9$^th$ Workshop on Parallel Systems and Algorithms, 2008	BibTeX
Jan Stender, Björn Kolbeck, Felix Hupfeld, Eugenio Cesario, Erich Focht, Matthias Hess, Jesus Malo, Jonathan Martí	Striping without Sacrifices: Maintaining POSIX Semantics in a Parallel File System	Proceedings of the 1st USENIX Workshop on Large-Scale Computing (LASCO’08), 2008	BibTeX
Felix Hupfeld, Toni Cortes, Björn Kolbeck, Erich Focht, Matthias Hess, Jesus Malo, Jonathan Marti, Jan Stender, Eugenio Cesario	The XtreemFS architecture - A case for object-based file systems in Grids	Concurrency and Computation: Practice and Experience, 20(8), 2008	BibTeX
Stefan Plantikow, Alexander Reinefeld, Florian Schintke	Transactions and Concurrency Control for Peer-to-Peer-Wikis: An Evaluation	Making Grids Work, Marco Danelutto, Paraskevi Fragopoulou, Vladimir Getov (Eds.), pp. 337-349, 2008	BibTeX DOI
Mikael Högqvist, Seif Haridi, Nico Kruber, Alexander Reinefeld, Thorsten Schütt	Using Global Information for Load Balancing in DHTs	Workshop on Decentralized Self Management for Grids, P2P, and User Communities, 2008	BibTeX
B. Mejías, Mikael Högqvist, P. Roy	Visualizing Transactional Algorithms for DHTs	IEEE P2P Conference, 2008	BibTeX
Toni Cortes, Carsten Franke, Yvon Jégou, Thilo Kielmann, Domenico Laforenza, Brian Matthews, Christine Morin, Luis Prieto, Alexander Reinefeld	XtreemOS: A Vision for a Grid Operating System	XtreemOS European Integrated Project, 2008	BibTeX
2007
Nuno Rodrigues, Decio Sousa, Luis Silva, Artur Andrzejak	A Fault-Injector Tool to Evaluate Failure Detectors in Grid-services	CoreGRID Workshop on Grid Programming Model Grid and P2P Systems Architecture Grid Systems, 2007	BibTeX
Thorsten Schütt, Florian Schintke, Alexander Reinefeld	A Structured Overlay for Multi-dimensional Range Queries	Euro-Par Conference, Anne-Marie Kermarrec (Ed.), pp. 503-513, Vol.4641, LNCS, 2007	BibTeX DOI
Patrick May, Gunnar Klau, Markus Bauer, Thomas Steinke	Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs	GCCB, W. Dubitzky (Ed.), pp. 19-32, Vol.4360, Lecture Notes in Bioinformatics, 2007	BibTeX
Harry Enke, Matthias Steinmetz, Thomas Radke, Angelika Reiser, Thomas Röblitz, Mikael Högqvist	AstroGrid-D: Enhancing Astronomic Science with Grid Technology	German e-Science Conference, 2007	BibTeX
Monika Moser, Seif Haridi	Atomic Commitment in Transactional DHTs	Proceedings of the CoreGRID Symposium, 2007	BibTeX
Peter Sobe, Kathrin Peter	Combining Compression, Encryption and Fault-tolerant Coding for Distributed Storage	21th International Parallel and Distributed Processing Symposium (IPDPS 2007) Proceedings, pp. 1-8, 2007	BibTeX
Hubert Busch, Ursula Droebes, Marek Fröhlich, Christian Schimmel	Das Berliner Wissenschaftsnetz BRAIN 2007	ZIB-Report 07-42	PDF BibTeX URN
Michael Meyer, Thomas Steinke, Jürgen Sühnel	Density functional study of isoguanine tetrad and pentad sandwich complexes with alkali metal ions	Journal of Molecular Modeling, 13(2), pp. 335-345, 2007	BibTeX
Artur Andrzejak, Luis Silva	Deterministic Models of Software Aging and Optimal Rejuvenation Schedules	10th IFIP/IEEE Symposium on Integrated Management (IM 2007), 2007	BibTeX
Alexander Reinefeld, Florian Schintke, Thorsten Schütt	Device and method for retrieving / storing electronic data in a system with a plurality of data processing units	United States Patent Application Publication No. US 2007/0165619 A1, 2007	BibTeX
Stefan Plantikow, Alexander Reinefeld, Florian Schintke	Distributed Wikis on Structured Overlays	CoreGrid Workshop on Grid Programming Models, Grid and P2P System Architecture, Grid Systems, Tools and Environments, 2007	BibTeX
Javier Alonso, Luis Silva, Artur Andrzejak, Jordi Torres	High-Available Grid Services through the use of Virtualized Clustering	IEEE-GRID, 2007	BibTeX
Artur Andrzejak, Monika Moser, Luis Silva	Managing Performance of Aging Applications via Synchronized Replica Rejuvenation	18th IFIP/IEEE Distributed Systems: Operations and Management (DSOM 2007), Alexander Clemm, Lisandro Granville, Rolf Stadler (Eds.), Vol.4785, LNCS, 2007	BibTeX
Samatha Kottha, Kathrin Peter, Thomas Steinke, Julian Bart, Jürgen Falkner, Anette Weisbecker, Fred Viezens, Yassene Mohammed, Ulrich Sax, Andreas Hoheisel, Thilo Ernst, Dietmar Sommerfeld, Dagmar Krefting, Michael Vossberg	Medical Image Processing in MediGRID	German E-Science Conference, 2007	BibTeX
Eric Stahlberg, Michael Babst, Daryl Popig, Thomas Steinke	Molecular Dynamics with FPGAs: A Portable API Molecular Simulations with Hardware Accelerators: A Portable Interface Definition for FPGA Supported Acceleration	International Supercomputing Conference 2007 (ISC 2007), 2007	BibTeX
Eric Stahlberg, Daryl Popig, Debie Ryle, Michael Babst, Mohammed Anderson, Thomas Steinke	Molecular Simulations with Hardware Accelerators	Reconfigurable Systems Summer Institute 2007 (RSSI 2007), 2007	BibTeX
Christian Grimme, Tobias Langhammer, Alexander Papaspyrou, Florian Schintke	Negotiation-based Choreography of Data-intensive Applications in the C3Grid Project	German E-Science Conference, 2007	BibTeX
Alexander Reinefeld, Florian Schintke, Thorsten Schütt	P2P Routing of Range Queries in Skewed Multidimensional Data Sets	ZIB-Report 07-23	PDF BibTeX URN
Artur Andrzejak, Alexander Reinefeld	Paradigms for Scalable and Dependable Grids	Future Generation Computer Systems (FGCS), 23(7), 2007	BibTeX
Thomas Granzer, Frank Breitling, Michael Braun, Harry Enke, Thomas Röblitz	Providing Remote Access to Robotic Telescopes by Adopting Grid Technology	German e-Science Conference, 2007	BibTeX
Mikael Högqvist, Thomas Röblitz, Alexander Reinefeld	Stellaris: An RDF-based Information Service for AstroGrid-D	German e-Science Conference, 2007	BibTeX
Stefan Plantikow, Alexander Reinefeld, Florian Schintke	Transactions for Distributed Wikis on Structured Overlays	DSOM, Alexander Clemm, Lisandro Granville, Rolf Stadler (Eds.), pp. 256-267, Vol.4785, LNCS, 2007	BibTeX DOI
Stefan Plantikow	Transaktionen für verteilte Wikis auf strukturierten Overlay Netzwerken	Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Miroslaw Malek (Advisors), 2007	PDF BibTeX URN
Stefan Plantikow	Transaktionen für verteilte Wikis auf strukturierten Overlay-Netzwerken	ZIB-Report 07-43	PDF BibTeX URN
Paulo Silva, Luis Silva, Artur Andrzejak	Using Micro-Reboots to Improve Software Rejuvenation in Apache Tomcat	Institute on System Architecture, CoreGRID, 2007	BibTeX
Luis Silva, Javier Alonso, Paulo Silva, Jordi Torres, Artur Andrzejak	Using Virtualization to Improve Software Rejuvenation	IEEE International Symposium on Network Computing and Applications (IEEE-NCA), 2007	BibTeX
Alexander Reinefeld, Florian Schintke, Thorsten Schütt	Vorrichtung und Verfahren zum Abrufen / Speichern von elektronischen Daten in einem System mit mehreren Datenverarbeitungseinheiten	Europäisches Patent EP 1 744 257 A1, 2007	BibTeX
Alexander Reinefeld, Florian Schintke, Thorsten Schütt	Vorrichtung und Verfahren zum Speichern / Abrufen von Objekten mit mehrdimensional adressierten, elektronischen Daten	Europäische Patentanmeldung Nr. 06012030.0 vom 12.06.2006, Patent Nr: 1868114, 2007	BibTeX
Felix Hupfeld, Toni Cortes, Björn Kolbeck, Jan Stender, Erich Focht, Matthias Hess, Jesus Malo, Jonathan Marti, Eugenio Cesario	XtreemFS: a case for object-based storage in Grid data management	3rd VLDB Workshop on Data Management in Grids, co-located with VLDB 2007, 2007	BibTeX
2006
Domenico Talia, Paolo Trunfio, Jingdi Zeng, Mikael Högqvist	A DHT-based Peer-to-Peer Framework for Resource Discovery in Grids	Institute on System Architecture, CoreGRID - Network of Excellence, 2006	BibTeX
Domenico Talia, Paolo Trunfio, Jingdi Zeng, Mikael Högqvist	A Peer-to-Peer Framework for Resource Discovery in Large-Scale Grids	CoreGRID Integration Workshop, 2006	BibTeX
Patrick May, Markus Bauer, Christian Köberle, Gunnar Klau	A computational approach to microRNA detection	ZIB-Report 06-44	PDF BibTeX URN
Christoph Herrmann, Tobias Langhammer	Combining partial evaluation and staged interpretation in the implementation of domain-specific languages	Sci. Comput. Program., 62(1), pp. 47-65, 2006	BibTeX DOI
Björn Kolbeck, Patrick May, T. Schmidt-Goenner, Thomas Steinke, E. Knapp	Connectivity independent protein-structure alignment: a hierarchical approach	BMC Bioinformatics, Vol.7, p. 510, 2006	BibTeX
Artur Andrzejak, Stefan Plantikow	Defining Fuzzy Logic Controllers with Scarce Model Data	First International Workshop on Feedback Control Implementation and Design in Computing Systems and Networks FeBID’06 (colocated with NOMS’06), 2006	BibTeX
Artur Andrzejak, Luis Silva	Deterministic Models of Software Aging and Optimal Rejuvenation Schedules	Institute on System Architecture, CoreGRID, 2006	BibTeX
Thomas Steinke, Alexander Reinefeld	Experiences with High-Level Programming of FPGAs on Cray XD1	CUG Proceedings, 2006	BibTeX
Kathrin Peter, Peter Sobe	Flexible Definition of Data and Redundancy Layout for Storage Systems	Sixth European Dependable Computing Conference (EDCC-6), Proceedings Supplemental Volume, pp. 59-60, 2006	BibTeX
	Future Generation Grids: Proceedings of the Workshop on Future Generation Grids, November 1-5, 2004, Dagstuhl, Germany	Vladimir Getov, Domenico Laforenza, Alexander Reinefeld (Eds.), Springer, 2006, ISBN: 978-0-387-27935-0	BibTeX
Tom Lichtenstein	Implementation eines Resourcebrokers im Kontext eines Grid-Datenmanagement-Systems	Master's thesis, 2006	PDF BibTeX URN
Artur Andrzejak, Alexander Reinefeld, Florian Schintke, Thorsten Schütt	On Adaptability in Grid Systems	Future Generation Grids: Proceedings of the Workshop on Future Generation Grids, November 1-5, 2004, Dagstuhl, Germany, Vladimir Getov, Domenico Laforenza, Alexander Reinefeld (Eds.), pp. 29-46, 2006	BibTeX DOI
Thomas Röblitz, Krzysztof Rzadca	On the Placement of Reservations into Job Schedules	Euro-Par 2006 Workshops, Wolfgang Lehner, Norbert Meyer, Achim Streit, Craig Stewart (Eds.), pp. 198-210, Vol.4375, Lecture Notes in Computer Science, 2006	BibTeX
Monika Moser	Platzierung von Replikaten in Verteilten Systemen	Master's thesis, 2006	PDF PDF BibTeX URN
Artur Andrzejak, Patrício Domingues, Luís Silva	Predicting Machine Availabilities in Desktop Pools	Management of Integrated End-to-End Communications and Services, 10th IEEE/IFIP Network Operations and Management Symposium, NOMS 2006, Vancouver, Canada, April 3-7, 2006. Proceedings, Joseph Hellerstein, Burkhard Stiller (Eds.), 2006	BibTeX DOI
Artur Andrzejak, Sven Graupner, Stefan Plantikow	Predicting Resource Demand in Dynamic Utility Computing Environments	2006 International Conference on Autonomic and Autonomous Systems (ICAS 2006), 16-21 July 2006, Silicon Valley, California, USA, p. 6, 2006	BibTeX DOI
Thomas Röblitz, Florian Schintke, Alexander Reinefeld	Resource reservations with fuzzy requests	Concurrency and Computation: Practice and Experience, 18(13), pp. 1681-1703, 2006	BibTeX DOI
Thorsten Schütt, Florian Schintke, Alexander Reinefeld	Structured Overlay without Consistent Hashing: Empirical Results	Sixth Workshop on Global and Peer-to-Peer Computing (GP2PC’06) at Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2006), 16-19 May 2006, Singapore, 2006	BibTeX DOI
Patrick May, Thomas Steinke	THESEUS - Protein Structure Prediction at ZIB	ZIB-Report 06-24	PDF BibTeX URN
Patrício Domingues, Artur Andrzejak, Luís Silva	Using Checkpointing to Enhance Turnaround Time on Institutional Desktop Grids	Second International Conference on e-Science and Grid Technologies (e-Science 2006), 4-6 December 2006, Amsterdam, The Netherlands, p. 73, 2006	BibTeX
Felix Hupfeld, M. Gordon	Using distributed consistent branching for efficient reconciliation of mobile workspaces	International Conference on Collaborative Computing, Vol.0, p. 8, 2006	BibTeX DOI
Jörg Meltzer	Vergleich von Co-Reservierungs-Algorithmen in Grid-Umgebungen	Master's thesis, 2006	PDF BibTeX URN
Patrick May, Hans-Christian Ehrlich, Thomas Steinke	ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services	Euro-Par 2006 Workshops, Wolfgang Lehner, Norbert Meyer, Achim Streit, Craig Stewart (Eds.), pp. 1148-1158, Vol.4375, Lecture Notes in Computer Science, 2006	BibTeX
2005
Jerry Rolia, Ludmila Cherkasova, Martin Arlitt, Artur Andrzejak	A capacity management service for resource pools	Proceedings of the Fifth International Workshop on Software and Performance, WOSP 2005, Palma, Illes Balears, Spain, July 12-14, pp. 229-237, 2005	BibTeX
Artur Andrzejak, Mehmet Ceyran	Characterizing and Predicting Resource Demand by Periodicity Mining	J. Network Syst. Manage., Special Issue on Self-Managing Systems and Networks, 13(2), 2005	BibTeX
Thorsten Schütt, Florian Schintke, Alexander Reinefeld	Chord#: Structured Overlay Network for Non-Uniform Load-Distribution	ZIB-Report 05-40	PDF BibTeX URN
Thomas Röblitz, Alexander Reinefeld	Co-reservation with the concept of virtual resources	5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 9-12 May, 2005, Cardiff, UK, pp. 398-406, 2005	BibTeX
Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser	Columba: an integrated database of proteins, structures, and annotations	BMC Bioinformatics, Vol.6, pp. 81-92, 2005	BibTeX DOI
The Anh Pham	Einbettung neuer Verwaltungsmethoden in die hierarchische Dateisystemsicht	Master's thesis, 2005	PDF BibTeX URN
Jan Wendler, Florian Schintke	Executing and observing CFD applications on the Grid	Future Generation Computer Systems the International Journal of Grid Computing: Theory, Methods and Applications, 21(1), pp. 11-18, 2005	BibTeX DOI
Artur Andrzejak, Ulf Hermann, Akhil Sahai	FEEDBACKFLOW – An Adaptive Workflow Generator for Systems Management	Second International Conference on Autonomic Computing (ICAC 2005), 13-16 June 2005, Seattle, WA, USA, pp. 335-336, 2005	BibTeX DOI
Jochen Witte	Implementierung einer NFS Schnittstelle im Kontext eines Grid-Datenmanagement-Systems	Master's thesis, 2005	PDF BibTeX URN
Björn Kolbeck, T. Schmidt-Gönner, Patrick May, E. Knapp	Protein structure alignment based on contact maps and secondary structure.	Proceedings of the German Conference on Bioinformatics (GCB), pp. 122-123, 2005	BibTeX
P. Roy, Ali Ghodsi, Seif Haridi, J. B. Stefani, T. Coupaye, Alexander Reinefeld, E. Winter, R. Yap	Self Management of Large-Scale Distributed Systems by Combining Peer-to-Peer Networks and Components	Institute on System Architecture, CoreGRID - Network of Excellence, 2005	BibTeX
Patrick May, B. Kallies, Thomas Steinke	THESEUS – a parallel threading core for highthroughput protein structure prediction	Proceedings of the 7th Congress of the World Association of Theoretically Orientes Chemists (WARTOC), 2005	BibTeX
Gabrielle Allen, K. Davis, Tom Goodale, Andrei Hutanu, Hartmut Kaiser, Thilo Kielmann, Andre Merzky, R. Nieuwpoort, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Edward Seidel, Brygg Ullmer	The Grid Application Toolkit: Toward Generic and Easy Appliction Programming Interfaces for the Grid	Procceedings of the IEEE, 93(3), pp. 534-550, 2005	BibTeX DOI
Florian Schintke	The ZIB distributed data management system	Future Generation Grids, Michel Cosnard, Vladimir Getov, Domenico Laforenza, Alexander Reinefeld (Eds.), p. 20, Dagstuhl Seminar Proceedings, 2005	BibTeX
Patrick May, F. Krause, C. Ehrlich, J. Maaskola, Thomas Steinke	ZIB threading pipeline - A webservice-based, distributed structure prediction workflow.	Proceedings of the German Conference on Bioinformatics (GCB), pp. 125-126, 2005	BibTeX
2004
E. Michalsky, A. Goede, Robert Preissner, Patrick May, Thomas Steinke	A distributed pipeline for structure prediction	CASP6 Abstract Book, Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Gaeta, Italy, pp. 112-114, 2004	BibTeX
Thomas Röblitz, Florian Schintke, Alexander Reinefeld, Olof Bärring, Maite Barroso Lopez, German Cancio, Sylvain Chapeland, Karim Chouikh, Lionel Cons, Piotr Poznanski, Philippe Defert, Jan Iven, Thorsten Kleinwort, Bernd Panzer-Steindel, Jaroslaw Polok, Catherine Rafflin, Alan Silverman, Tim Smith, Jan van Eldik, David Front, Massimo Biasotto, Cristina Aiftimiei, Enrico Ferro, Gaetano Maron, Andrea Chierici, Luca dell’Agnello, Marco Serra, Michele Michelotto, Lord Hess, Volker Lindenstruth, Frank Pister, Timm Steinbeck, David Groep, Martijn Steenbakkers, Oscar Koeroo, Wim de Cerff, Gerben Venekamp, Paul Anderson, Tim Colles, Alexander Holt, Alastair Scobie, Michael George, Andrew Washbrook, Rafael Leiva	Autonomic Management of Large Clusters and Their Integration into the Grid	J. Grid Comput., 2(3), pp. 247-260, 2004	BibTeX DOI
Li Xiao, Xiaodong Zhang, Artur Andrzejak, Songqing Chen	Building a Large and Efficient Hybrid Peer-to-Peer Internet Caching System	IEEE Trans. Knowl. Data Eng., 16(6), pp. 754-769, 2004	BibTeX DOI
Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser	Columba: Multidimensional Data Integration of Protein Annotations	Data Integration in the Life Sciences, First International Workshop, DILS 2004, Leipzig, Germany, March 25-26, Erhard Rahm (Ed.), pp. 156-171, Vol.2994, Lecture Notes in Computer Science, 2004	BibTeX DOI
Alexander Reinefeld, Florian Schintke	Dienste und Standards für das Grid Computing	E-Science and Grid - Ad-hoc-Netze - Medienintegration, 18. DFN-Arbeitstagung über Kommunikationsnetze, Düsseldorf, 2004, Jan von Knop, Wilhelm Haverkamp, Eike Jessen (Eds.), pp. 293-304, Vol.P-55, LNI, 2004	BibTeX
Thomas Röblitz, Florian Schintke, Jan Wendler	Elastic Grid Reservations with User-Defined Optimization Policies	Proceedings of the 2nd Workshop on Adaptive Grid Middleware (AGridM’04), in conjunction with PACT 2004, Antibes Juan-les-Pins, France, 2004	BibTeX
Alexander Reinefeld, Florian Schintke	Grid Services: Web Services zur Nutzung verteilter Ressourcen	Informatik Spektrum, 27(2), pp. 129-135, 2004	BibTeX DOI
Jan Wendler, Florian Schintke	Grid-Enabled Computational Fluid Dynamics using FlowGrid	Cracow Grid Workshop ’03 Proceedings, pp. 59-66, 2004	BibTeX
Felix Hupfeld	Log-Structured Storage for Efficient Weakly-Connected Replication	24th International Conference on Distributed Computing Systems Workshops (ICDCS 2004 Workshops), 23-24 March 2004, Hachioji, Tokyo, Japan, pp. 458-463, 2004	BibTeX DOI
Stefano Campadello, David De Roure, Bahador Farshchian, Meike Fehse, Carole A. Goble, Yunmiao Gui, Manuel V. Hermenegildo, Karl Jeffery, Domenico Laforenza, Peter Maccallum, Jordi Masso, Thierry Priol, Alexander Reinefeld, Michel Riguidel, David Snelling, Domenico Talia, Theodora A. Varvarigou	Next Generation Grids 2 - Requirements and Options for European Grids Research 2005-2010 and Beyond	NGG2 Group, 2004	BibTeX
Patrick May, Stefan Barthel, Ina Koch	PTGL - a web-based database application for protein topologies	Bioinformatics, 20(17), pp. 3277-3279, 2004	BibTeX DOI
Thorsten Schütt, André Merzky, Andrei Hutanu, Florian Schintke	Remote partial file access using compact pattern descriptions	4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), April 19-22, 2004, Chicago, Illinois, USA, pp. 482-489, 2004	BibTeX DOI
Alexander Reinefeld, Florian Schintke, Thorsten Schütt	Scalable and Self-Optimizing Data Grids	Annual Review of Scalable Computing, World Scientific, pp. 30-60, 2004	BibTeX DOI
Jerry Rolia, Xiaoyun Zhu, Martin Arlitt, Artur Andrzejak	Statistical service assurances for applications in utility Grid environments	Performance Evaluation, 58(2-3), pp. 319-339, 2004	BibTeX DOI
Patrick May, Thomas Steinke, Michael Meyer	THESEUS: A Parallel Threading Core	Procs. 12th Internat. Conf. on Intelligent Systems for Mol. Bio. (ISMB) and 3rd European Conf. on Comp. Bio. (ECCB), Glasgow, p. 199, 2004	BibTeX
2003
Florian Schintke, Thorsten Schütt, Alexander Reinefeld	A Framework for Self-Optimizing Grids Using P2P Components	14th International Workshop on Database and Expert Systems Applications (DEXA’03), September 1-5, 2003, Prague, Czech Republic, pp. 689-693, 2003	BibTeX DOI
Sven Graupner, Artur Andrzejak, Vadim Kotov, Holger Trinks	Adaptive Control Overlay for Service Management	First Workshop on the Design of Self-Managing Systems (AASMS’03), 2003	BibTeX
Jerry Rolia, Artur Andrzejak, Martin Arlitt	Automating Enterprise Application Placement in Resource Utilities	Self-Managing Distributed Systems, 14th IFIP/IEEE International Workshop on Distributed Systems, Marcus Brunner, Alexander Keller (Eds.), pp. 118-129, Vol.2867, 2003	BibTeX DOI
Kristian Rother, S. Trissl, H. Müller, Patrick May, R. Heek, Robert Preissner, Thomas Steinke, Ina Koch, Ulf Leser, Cornelius Frömmel	Columba - A Database of Annotations of Protein Structure	ECCB - Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics, C. Christophe, H.-P. Lenhof, M.-F. Sagot (Eds.), pp. 109-110, 2003	BibTeX
Artur Andrzejak, Komei Fukuda	Debugging Distributed Computations by Reverse Search	The 21st IASTED International Multi-Conference on Applied Informatics (AI 2003), February 10-13, 2003, Innsbruck, Austria, M. Hamza (Ed.), pp. 719-725, 2003	BibTeX
Thorsten Schütt, Florian Schintke, Alexander Reinefeld	Efficient Synchronization of Replicated Data in Distributed Systems	Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part I, Peter Sloot, David Abramson, Alexander Bogdanov, Jack Dongarra, Albert Zomaya, Yuri Gorbachev (Eds.), pp. 274-283, Vol.2657, Lecture Notes in Computer Science, 2003	BibTeX DOI
Thomas Röblitz, Florian Schintke, Alexander Reinefeld	From Clusters to the Fabric: The Job Management Perspective	2003 IEEE International Conference on Cluster Computing (CLUSTER 2003), 1-4 December 2003, Kowloon, Hong Kong, China, pp. 468-473, 2003	BibTeX DOI
Alexander Reinefeld, Florian Schintke	Grid Computing in Deutschland	Spektrum der Wissenschaft, pp. 72-73, 2003	BibTeX
Frank Cordes, Robert Preissner, Thomas Steinke	How Does a Protein Work?	BioTOPics J. of Biotechnology Berlin-Brandenburg, 18(2), pp. 4-5, 2003	BibTeX
Artur Andrzejak, Emo Welzl	In between k-Sets, j-Facets, and i-Faces: (i , j) - Partition	Discrete & Computational Geometry, 29(1), pp. 105-131, 2003	BibTeX DOI
Simon Rieche	Lastbalancierung in Peer-to-Peer Systemen	Master's thesis, 2003	PDF BibTeX URN
Artur Andrzejak	Memory-Efficient and Fast Enumeration of Global States	Seventh International Conference on Information Visualization, IV 2003, 16-18 July 2003, London, UK, Ebad Banissi, Katy Börner, Chaomei Chen, Gordon Clapworthy, Carsten Maple, Amy Lobben, Christopher Moore, Jonathan Roberts, Anna Ursyn, Jian-Ping Zhang (Eds.), pp. 189-193, 2003	BibTeX DOI
Florian Schintke, Alexander Reinefeld	Modeling Replica Availability in Large Data Grids	J. Grid Computing, 1(2), pp. 219-227, 2003	BibTeX DOI
Patrick May, Ina Koch	PTGL - Protein Topology Graph Library	ECCB - Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics, C. Christophe, H.-P. Lenhof, M.-F. Sagot (Eds.), pp. 193-194, 2003	BibTeX
Jan Wendler, Joscha Bach	Recognizing and Predicting Agent Behavior with Case Based Reasoning	RoboCup 2003: Robot Soccer World Cup VII, Daniel Polani, Brett Browning, Andrea Bonarini, Kazuo Yoshida (Eds.), pp. 729-738, Vol.3020, Lecture Notes in Computer Science, 2003	BibTeX DOI
Sven Graupner, Vadim Kotov, Artur Andrzejak, Holger Trinks	Service-Centric Globally Distributed Computing	IEEE Internet Computing, 7(4), pp. 36-43, 2003	BibTeX DOI
Olof Bärring, Maite Barroso Lopez, German Cancio, Thomas Röblitz, Florian Schintke, et al.	Towards automation of computing fabrics using tools from the fabric management workpackage of the EU DataGrid project	Computing in High Energy and Nuclear Physics (CHEP03), pp. 1-8, 2003	BibTeX arXiv
Sven Graupner, Artur Andrzejak, Vadim Kotov	Visualizing Topology in Self-Organizing Management Overlays	Seventh International Conference on Information Visualization, IV 2003, 16-18 July 2003, London, UK, Ebad Banissi, Katy Börner, Chaomei Chen, Gordon Clapworthy, Carsten Maple, Amy Lobben, Christopher Moore, Jonathan Roberts, Anna Ursyn, Jian-Ping Zhang (Eds.), pp. 200-205, 2003	BibTeX DOI
2002
	2nd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2002), 22-24 May 2002, Berlin, Germany	H. Bal, K.-P. Löhr, Alexander Reinefeld (Eds.), 2002, ISBN: 0-7695-1582-7	BibTeX
Alexander Reinefeld, Florian Schintke	Concepts and Technologies for a Worldwide Grid Infrastructure	Euro-Par 2002, Parallel Processing, 8th International Euro-Par Conference Paderborn, Germany, August 27-30, 2002, Proceedings, Burkhard Monien, Rainer Feldmann (Eds.), pp. 62-72, Vol.2400, Lecture Notes in Computer Science, 2002	BibTeX DOI
Alexander Reinefeld, Hinnerk Stüben, Florian Schintke, George Din	GuiGen: a toolset for creating customized interfaces for Grid user communities	Future Generation Comp. Syst., 18(8), pp. 1075-1084, 2002 (preprint available as ZIB-Report 02-06)	PDF (ZIB-Report) BibTeX DOI
Felix Hupfeld	Hierarchical Structures in Attribute-based Namespaces and their Application to Browsing	ZIB-Report 03-06	PDF BibTeX URN
Florian Schintke, Alexander Reinefeld	On the Cost of Reliability in Large Data Grids	ZIB-Report 02-52 (Appeared under the title "Modeling Replica Availabilty in Large Data Grids" in: Journal of Grid Computing 1 (2003) pp. 219-227)	PDF BibTeX URN DOI
Barton P. Miller, Jesús Labarta, Florian Schintke, Jens Simon	Performance Evaluation, Analysis and Optimization	Euro-Par 2002 Parallel Processing, pp. 131-131, Vol.2400, LNCS, 2002	BibTeX DOI
Jerry Rolia, Xiaoyun Zhu, Martin Arlitt, Artur Andrzejak	Statistical Service Assurances for Applications in Utility Grid Environments	10th International Workshop on Modeling, Analysis, and Simulation of Computer and Telecommunication Systems (MASCOTS 2002), 11-16 October 2002, Fort Worth, Texas, USA, pp. 247-256, 2002	BibTeX DOI
Thorsten Schütt	Synchronisation von verteilten Verzeichnisstrukturen	Master's thesis, 2002	PDF BibTeX URN
Hubert Busch, Sebastian Heidl, Ralf Staudemeyer, Manfred Stolle	Teleimmersion – Erfahrungen mit der Gigabit-Ethernet-Strecke zwischen Berlin und Hannover	DFN-Mitteilungen, Vol.58(3), pp. 7-9, 2002	BibTeX
2001
Florian Schintke, Jens Simon, Alexander Reinefeld	A Cache Simulator for Shared Memory Systems	Computational Science - ICCS 2001, pp. 569-578, Vol.2074, LNCS, 2001	BibTeX DOI
Gabrielle Allen, Thomas Dramlitsch, Tom Goodale, Gerd Lanfermann, Thomas Radke, Edward Seidel, Thilo Kielmann, Kees Verstoep, Zoltán Balaton, Péter Kacsuk, Ferenc Szalai, Jörn Gehring, Axel Keller, Achim Streit, Ludek Matyska, Miroslav Ruda, Ales Krenek, Harald Knipp, André Merzky, Alexander Reinefeld, Florian Schintke, Bogdan Ludwiczak, Jarek Nabrzyski, Juliusz Pukacki, Hans-Peter Kersken, Giovanni Aloisio, Massimo Cafaro, Wolfgang Ziegler, Michael Russell	Early experiences with the EGrid testbed	Proceedings First IEEE/ACM International Symposium on Cluster Computing and the Grid, pp. 130-137, 2001	BibTeX DOI
2000
Florian Schintke	Ermittlung von Programmlaufzeiten anhand von Speicherzugriffen, Microbenchmarks und Simulation von Speicherhierarchien	Master's thesis, 2000	PDF BibTeX URN

Supercomputing

Die Abteilung Supercomputing forscht interdisziplinär in den Bereichen Hardware- und Software-Technologien für das Hochleistungsrechnen und Wissenschaftliche Rechnen.

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