Modeling and Simulation of Complex Processes

Die Abteilung Modeling and Simulation of Complex Processes entwickelt effiziente Modellierungs-, Simulations- und Optimierungswerkzeuge und -algorithmen für anspruchsvolle Anwendungsprobleme aus Medizin, Systembiologie, Molekulardynamik und Nano-Optik. Auf der Grundlage einer engen Zusammenarbeit mit Anwendungspartnern zielt die Abteilung nicht nur auf die Generierung wissenschaftlicher Erkenntnisse ab, sondern bietet auch Software-Prototypen und Demonstratoren für spezifische Lösungen an.

Dafür entwickeln wir adaptive Algorithmen in den Bereichen Finiter Elemente, Konformationsdynamik, Optimalsteuerung und Parameterschätzung, wobei Multilevel-Strukturen für Effizienz und Robustheit genutzt werden. Mit zunehmender Anwendungskomplexität spielen Mehrskalen-, Multi-Physik- und Hybridmodelle eine immer wichtigere Rolle, genauso wie stochastische Effekte, Uncertainty Quantification und Experimentendesign.

Publikationen

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2023
Arthur Straube, Stefanie Winkelmann, Felix Höfling	Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles	The Journal of Physical Chemistry B, 127(13), pp. 2955-2967, 2023 (preprint available as ZIB-Report 22-21)	PDF (ZIB-Report) BibTeX arXiv DOI
Lilli Kuen, Fridtjof Betz, Felix Binkowski, Philipp-Immanuel Schneider, Martin Hammerschmidt, Niels Heermeier, Sven Rodt, Stephan Reitzenstein, Sven Burger	Applying a Riesz-projection-based contour integral eigenvalue solver to compute resonance modes of a VCSEL	Proc. SPIE, p. 125750J, Vol.12575, 2023	BibTeX DOI
Elena Mikheeva, Rémi Colom, Karim Achouri, Adam Overvig, Felix Binkowski, Jean-Yves Duboz, Sébastien Cueff, Shanhui Fan, Sven Burger, Andrea Alù, Patrice Genevet	Asymmetric phase modulation with light with parity-symmetry broken metasurfaces	Optica, Vol.10, p. 1287, 2023	BibTeX DOI
Mauricio del Razo, Stefanie Winkelmann, Rupert Klein, Felix Höfling	Chemical diffusion master equation: formulations of reaction-diffusion processes on the molecular level	Journal of Mathematical Physics, 64(1), 2023	BibTeX DOI arXiv
Danbi Yoo, Peter Tillmann, Tobias Krauss, Johannes Sutter, Angelika Harter, Sergei Trofimov, Boris Naydenov, Klaus Jäger, Hubert Hauser, Christiane Becker	Comparative Optical Analysis of Imprinted Nano-, Micro- and Biotextures on Solar Glasses for Increased Energy Yield	Solar RRL, Vol.7, p. 2300071, 2023	BibTeX DOI
Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Cover Picture: Resonance Expansion of Quadratic Quantities with Regularized Quasinormal Modes	Phys. Status Solidi A, Vol.220, p. 2370013, 2023	BibTeX DOI
Rémi Colom, Elena Mikheeva, Karim Achouri, Jesus Zuniga-Perez, Nicolas Bonod, Olivier J.F. Martin, Sven Burger, Patrice Genevet	Crossing of the Branch Cut: The Topological Origin of a Universal 2π-Phase Retardation in Non-Hermitian Metasurfaces (Laser Photonics Rev. 17(6)/2023)	Laser Photonics Rev., Vol.17, p. 2370029, 2023	BibTeX DOI
Remi Colom, Elena Mikheeva, Karim Achouri, Jesus Zuniga-Perez, Nicolas Bonod, Olivier J. F. Martin, Sven Burger, Patrice Genevet	Crossing of the branch cut: the topological origin of a universal 2π-phase retardation in non-Hermitian metasurfaces	Laser Photonics Rev., Vol.17, p. 2200976, 2023	BibTeX DOI arXiv
Arthur Straube, Felix Höfling	Depinning transition of self-propelled particles	2023 (under review)	BibTeX arXiv
Isam Ben Soltane, Rémi Colom, Brian Stout, Nicolas Bonod	Derivation of the Transient and Steady Optical States from the Poles of the S-Matrix	Laser Photon. Rev., Vol.17, p. 2200141, 2023	BibTeX DOI
Marvin Lücke, Michael Dellnitz, Eyke Hüllermeier, Sina Ober-Blöbaum, Christian Offen, Sebastian Peitz, Karlson Pfannschmidt	Efficient Time-Stepping for Numerical Integration Using Reinforcement Learning	SIAM Journal on Scientific Computing, 45(2), 2023	BibTeX DOI
Matthias Plock, Sven Burger, Philipp-Immanuel Schneider	Efficient reconstruction of model parameters using Bayesian target-vector optimization	Proc. SPIE, p. PC1261905, Vol.PC12619, 2023	BibTeX DOI
Martin Hammerschmidt, Lin Zschiedrich, Lauryna Siaudinyté, Phillip Manley, Philipp-Immanuel Schneider, Sven Burger	Forward simulation of coherent beams on grating structures for coherent scatterometry	Proc. SPIE, p. PC1261907, Vol.PC12619, 2023	BibTeX DOI arXiv
Amal Alphonse, Diogo Caetano, Ana Djurdjevac, Charles M. Elliott	Function spaces, time derivatives and compactness for evolving families of Banach spaces with applications to PDEs	Journal of Differential Equations, Vol.353, pp. 268-338, 2023	BibTeX arXiv DOI
Lucas Rickert, Fridtjof Betz, Matthias Plock, Sven Burger, Tobias Heindel	High-performance designs for fiber-pigtailed quantum-light sources based on quantum dots in electrically-controlled circular Bragg gratings	Opt. Express, Vol.31, p. 14750, 2023	BibTeX DOI arXiv
Marvin Lücke, Jobst Heitzig, Péter Koltai, Nora Molkethin, Stefanie Winkelmann	Large population limits of Markov processes on random networks	Stochastic Processes and their Applications, 2023 (epub ahead of print)	BibTeX DOI arXiv
Ariane Ernst, Undine Falkenhagen, Stefanie Winkelmann	Model reduction for Ca2+-induced vesicle fusion dynamics	Proceedings in Applied Mathematics & Mechanics, 2023 (accepted for publication)	BibTeX DOI
Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann	Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design	Scientific Reports, 13(607), 2023	BibTeX DOI
Deshabrato Mukherjee, Benjámin Kalas, Sven Burger, György Sáfrán, Miklós Serényi, Miklós Fried, Péter Petrik	Nanostructures for in-situ surface-enhanced Kretschmann-Raether ellipsometry	Proc. SPIE, p. 124280S, Vol.12428, 2023	BibTeX DOI arXiv
Lia Gander, Rolf Krause, Martin Weiser, Francisco Costabal, Simone Pezzuto	On the Accuracy of Eikonal Approximations in Cardiac Electrophysiology in the Presence of Fibrosis	Functional Imaging and Modeling of the Heart. FIMH 2023., Vol.13958, Lecture Notes in Computer Science, 2023	BibTeX DOI
Peter Tillmann	Optimizing bifacial tandem solar cells for realistic operation conditions	Doctoral thesis, Freie Universität Berlin, Christof Schütte, Christiane Becker (Advisors), 2023	BibTeX DOI
Felix Binkowski, Fridtjof Betz, Remi Colom, Patrice Genevet, Sven Burger	Poles and zeros of electromagnetic quantities in photonic systems	arXiv, p. 2307.04654, 2023	BibTeX DOI arXiv
Fridtjof Betz, Felix Binkowski, Sven Burger	RPExpand	Zenodo, p. 7840116, 2023	BibTeX DOI
Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Resonance expansion of quadratic quantities with regularized quasinormal modes	Phys. Status Solidi A, Vol.220, p. 2200892, 2023	BibTeX DOI arXiv
Francisco Javier Beron-Vera, Maria Josefina Olascoaga, Luzie Helfmann, Philippe Miron	Sampling-Dependent Transition Paths of Iceland-Scotland Overflow Water	Journal of Physical Oceanography, 53(4), pp. 1151-1160, 2023	BibTeX arXiv DOI
Felix Binkowski, Fridtjof Betz, Remi Colom, Patrice Genevet, Sven Burger	Source code and simulation results: Poles and zeros of electromagnetic quantities in photonic systems	Zenodo, p. 8063931, 2023	BibTeX DOI
Sarah Wolf, Steffen Fürst, Andreas Geiges, Manfred Laublichler, Jahel Mielke, Gesine Steudle, Konstantin Winter, Carlo Jaeger	The Decision Theatre Triangle for societal challenges – an example case and research needs	Journal of Cleaner Production, Vol.394, p. 136299, 2023	BibTeX DOI
Julian M. Bopp, Matthias Plock, Tim Turan, Gregor Pieplow, Sven Burger, Tim Schröder	‘Sawfish’ Spin-Photon Interface for Near-Unity Emitter-to-Waveguide Coupling	Conference on Lasers and Electro-Optics (CLEO), p. SF1O.6, OSA Technical Digest, 2023	BibTeX DOI
2022
Lucas Rickert, Timm Gao, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Tobias Heindel	A Plug&Play Telecom-Wavelength Single-Photon Source for Quantum Key Distribution	Quantum 2.0, p. QTu4C.6, Technical Digest Series (Optica), 2022	BibTeX DOI
Mauricio del Razo, Daniela Frömberg, Arthur Straube, Christof Schütte, Felix Höfling, Stefanie Winkelmann	A probabilistic framework for particle-based reaction–diffusion dynamics using classical Fock space representations	Letters in Mathematical Physics, 112(49), 2022	BibTeX arXiv DOI
Timm Gao, Lucas Rickert, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Tobias Heindel	A quantum key distribution testbed using a plug&play telecom-wavelength single-photon source	Appl. Phys. Rev., Vol.9, p. 011412, 2022	BibTeX DOI arXiv
Konstantin Fackeldey, Mathias Oster, Leon Sallandt, Reinhold Schneider	Approximative Policy Iteration for Exit Time Feedback Control Problems driven by Stochastic Differential Equations using Tensor Train format	SIAM Journal on Multiscale Modeling and Simulation, 20(1), pp. 379-403, 2022	BibTeX arXiv DOI
Matthias Plock, Kas Andrle, Sven Burger, Philipp-Immanuel Schneider	Bayesian Target-Vector Optimization for Efficient Parameter Reconstruction	Adv. Theory Simul., Vol.5, p. 2200112, 2022	BibTeX DOI arXiv
Philipp-Immanuel Schneider, Lin Zschiedrich, Martin Hammerschmidt, Lilli Kuen, Ivan Sekulic, Julien Kluge, Bastian Leykauf, Markus Krutzik, Sven Burger	Boosting quantum optics experiments with Bayesian optimization	Proc. SPIE, p. 122270F, Vol.12227, 2022	BibTeX DOI
Oscar Avalos-Ovando, Eva Yazmin Santiago, Artur Movsesyan, Xiang-Tian Kong, Peng Yu, Lucas V. Besteiro, Larousse Khosravi Khorashad, Hiromi Okamoto, Joseph M. Slocik, Miguel Correa-Duarte, Miguel Comesana-Hermo, Tim Liedl, Gil Markovich, Sven Burger, Alexander O. Govorov	Chiral Bioinspired Plasmonics: A Paradigm Shift for Optical Activity and Photochemistry	ACS Photon., Vol.9, p. 2219, 2022	BibTeX DOI
Yoel Negrin-Montecelo, Artur Movsesyan, Jie Gao, Sven Burger, Zhiming Wang, Sylvain Nlate, Emilie Pouget, Reiko Oda, Miguel Comesana-Hermo, Alexander O. Govorov, Miguel Correa-Duarte	Chiral Generation of Hot Carriers for Polarization-Sensitive Plasmonic Photocatalysis with Hybrid Nanostructures	J. Am. Chem. Soc., Vol.144, p. 1663, 2022	BibTeX DOI
Marvin Lücke, Jingyi Lu, Daniel E. Quevedo	Coding for secrecy in remote state estimation with an adversary	IEEE Transactions on Automatic Control, 67(9), pp. 4955-4962, 2022	BibTeX DOI
Sourav Rej, Eva Yazmin Santiago, Olga Baturina, Yu Zhang, Sven Burger, Stepan Kment, Alexander O. Govorov, Alberto Naldoni	Colloidal Titanium Nitride Nanobars for Broadband Inexpensive Plasmonics and Photochemistry from Visible to Mid-IR Wavelengths	Nano Energy, Vol.104, p. 107989, 2022	BibTeX DOI arXiv
Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger	Computation of eigenfrequency sensitivities using Riesz projections for efficient optimization of nanophotonic resonators	Commun. Phys., Vol.5, p. 202, 2022	BibTeX DOI arXiv
Lucas Rickert, Fridtjof Betz, Matthias Plock, Sven Burger, Tobias Heindel	Data publication for "High-performance designs for fiber-pigtailed quantum-light sources based on quantum dots in electrically-controlled circular Bragg gratings"	Zenodo, p. 7360516, 2022	BibTeX DOI
Phillip Manley, Jan Krüger, Lin Zschiedrich, Martin Hammerschmidt, Bernd Bodermann, Rainer Köning, Philipp-Immanuel Schneider	Elementary, my dear Zernike: model order reduction for accelerating optical dimensional microscopy	EPJ Web Conf., p. 10010, Vol.266, 2022	BibTeX DOI
Christoph Gorgulla, Abhilash Jayaraj, Konstantin Fackeldey, Haribabu Arthanari	Emerging frontiers in virtual drug discovery: From quantum mechanical methods to deep learning approaches	Current Opinion in Chemical Biology, Vol.69, pp. 102156-102156-12, 2022	BibTeX DOI
Remi Colom, Felix Binkowski, Fridtjof Betz, Yuri Kivshar, Sven Burger	Enhanced Purcell factor for nanoantennas supporting interfering resonances	Phys. Rev. Research, Vol.4, p. 023189, 2022	BibTeX DOI arXiv
Sophie Fischer-Holzhausen, Susanna Röblitz	Hormonal regulation of ovarian follicle growth in humans: Model-based exploration of cycle variability and parameter sensitivities	Journal of Theoretical Biology, 2022	BibTeX DOI
Klaus Jäger, Johannes Sutter, Philipp Tockhorn, Martin Hammerschmidt, Philipp-Immanuel Schneider, Steve Albrecht, Christiane Becker	Improving perovskite/silicon tandem solar cells with optical simulations	Proc. SPIE, p. PC1215001, Vol.PC12150, 2022	BibTeX DOI
Sophie Fischer-Holzhausen, Susanna Röblitz	Mathematical modelling of follicular growth and ovarian stimulation	Current Opinion in Endocrine and Metabolic Research, 2022	BibTeX DOI
Peter Tillmann, Klaus Jäger, Asher Karsenti, Lev Kreinin, Christiane Becker	Model-Chain Validation for Estimating the Energy Yield of Bifacial Perovskite/Silicon Tandem Solar Cells	Sol. RRL, Vol.6, p. 2200079, 2022	BibTeX DOI
Philipp Tockhorn, Johannes Sutter, Alexandros Cruz, Philipp Wagner, Klaus Jäger, Danbi Yoo, Felix Lang, Max Grischek, Bor Li, Jinzhao Li, Oleksandra Shargaieva, Eva Unger, Amran Al-Ashouri, Eike Köhnen, Martin Stolterfoth, Dieter Neher, Rutger Schlatmann, Bernd Rech, Bernd Stannowski, Steve Albrecht, Christiane Becker	Nano-optical designs for high-efficiency monolithic perovskite–silicon tandem solar cells	Nat. Nanotechnol., Vol.17, p. 1214, 2022	BibTeX DOI
Philipp Tockhorn, Johannes Sutter, Alexandros Cruz, Philipp Wagner, Klaus Jäger, Danbi Yoo, Felix Lang, Max Grischek, Bor Li, Amran Al-Ashouri, Eike Köhnen, Martin Stolterfoht, Dieter Neher, Rutger Schlatmann, Bernd Rech, Bernd Stannowski, Steve Albrecht, Christiane Becker	Nanooptically Enhanced Perovskite/Silicon Tandem Solar Cells with 29.80% Power Conversion Efficiency	OSA Adv. Photonics, p. JTu4H.2, OSA Technical Digest, 2022	BibTeX DOI
Yujing Wang, Luca Vannucci, Sven Burger, Niels Gregersen	Near-unity efficiency in ridge waveguide-based, on-chip single-photon sources	Mater. Quantum Technol., Vol.2, p. 045004, 2022	BibTeX DOI arXiv
Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger	Numerical methods for the investigation of resonances in nanophotonics	The 12th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2022), S. Zouhdi (Ed.), p. 247, 2022	BibTeX
Lucas Bremer, Carlos Jimenez, Simon Thiele, Ksenia Weber, Tobias Huber, Sven Rodt, Alois Herkommer, Sven Burger, Sven Höfling, Harald Giessen, Stephan Reitzenstein	Numerical optimization of single-mode fiber- coupled single-photon sources based on semiconductor quantum dots	Opt. Express, Vol.30, p. 15913, 2022	BibTeX DOI arXiv
Kevin Martens, Timon Funck, Eva Y. Santiago, Alexander O. Govorov, Sven Burger, Tim Liedl	Onset of Chirality in Plasmonic Meta-Molecules and Dielectric Coupling	ACS Nano, Vol.16, p. 16143, 2022	BibTeX DOI arXiv
Kseniia Volkova, Julia Heupel, Sergei Trofimov, Fridtjof Betz, Rémi Colom, Rowan W. MacQueen, Sapida Akhundzada, Meike Reginka, Arno Ehresmann, Johann Peter Reithmeier, Sven Burger, Cyril Popov, Boris Naydenov	Optical and Spin Properties of NV Center Ensembles in Diamond Nano-Pillars	Nanomaterials, Vol.12, p. 1516, 2022	BibTeX DOI
Stephan Oehme, Philippe Moewis, Heide Boeth, Benjamin Bartek, Annika Lippert, Christoph von Tycowicz, Rainald Ehrig, Georg Duda, Tobias Jung	PCL insufficient patients with increased translational and rotational passive knee joint laxity have no increased range of anterior–posterior and rotational tibiofemoral motion during level walking	Scientific Reports, 12(1), pp. 1-11, 2022	PDF BibTeX DOI
Artur Movsesyan, Eva Yazmin Santiago, Sven Burger, Miguel Correa-Duarte, Lucas V. Besteiro, Zhiming Wang, Alexander O. Govorov	Plasmonic nanocrystals with complex shapes for photocatalysis and growth: Contrasting anisotropic hot-electron generation with the photothermal effect	Adv. Opt. Mater., Vol.10, p. 2102663, 2022	BibTeX DOI arXiv
Philipp-Immanuel Schneider, Phillip Manley, Jan Krüger, Lin Zschiedrich, Rainer Köning, Bernd Bodermann, Sven Burger	Reconstructing phase aberrations for high-precision dimensional microscopy	Proc. SPIE, Vol.12137, p. 121370I, 2022	BibTeX DOI
Matthias Plock, Kas Andrle, Sven Burger, Philipp-Immanuel Schneider	Research data and example scripts for the paper "Bayesian Target-Vector Optimization for Efficient Parameter Reconstruction"	Zenodo, 2022	BibTeX DOI
Tiago Ramos Leite, Lin Zschiedrich, Orhan Kizilkaya, Kevin M. McPeak	Resonant Plasmonic–Biomolecular Chiral Interactions in the Far-Ultraviolet: Enantiomeric Discrimination of sub-10 nm Amino Acid Films	Nano Lett., Vol.22, p. 7343, 2022	BibTeX DOI
Julian M. Bopp, Matthias Plock, Tim Turan, Gregor Pieplow, Sven Burger, Tim Schröder	Sawfish Photonic Crystal Cavity for Near-Unity Emitter-to-Fiber Interfacing in Quantum Network Applications	arXiv, p. 2210.04702, 2022	BibTeX DOI arXiv
Fridtjof Betz, Remi Colom, Sven Burger, Boris Naydenov	Scripts for quantifying the effect of diamond nano-pillars on the fluorescence of NV centers	Zenodo, 2022	BibTeX DOI
Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger	Source code and simulation data for Computation of eigenfrequency sensitivities using Riesz projections for efficient optimization of nanophotonic resonators	Zenodo, 2022	BibTeX DOI
Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Source code and simulation results for computing resonance expansions of quadratic quantities with regularized quasinormal modes	Zenodo, 2022	BibTeX DOI
Remi Colom, Felix Binkowski, Fridtjof Betz, Yuri Kivshar, Sven Burger	Source code and simulation results for nanoantennas supporting an enhanced Purcell factor due to interfering resonances	Zenodo, 2022	BibTeX DOI
Maximilian Engel, Guillermo Olicón-Méndez, Nathalie Unger, Stefanie Winkelmann	Synchronization and random attractors for reaction jump processes	2022 (under review)	BibTeX arXiv DOI
Tillmann Krüger, Brigitte Leeners, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Harald Engler, Susanna Röblitz, Helge Frieling, Christopher Sinke, Kirsten Jahn	The androgen system across the menstrual cycle: Hormonal, (epi-)genetic and psychometric alterations	Physiology and Behavior, 2022	BibTeX DOI
Artur Movsesyan, Eva Yazmin Santiago, Sven Burger, Miguel Correa-Duarte, Lucas V. Besteiro, Zhiming Wang, Alexander O. Govorov	The anisotropy of hot carriers’ spatial distribution contrasts the isotropy of photothermal effects in complex and small plasmonic nanocrystals with complex shapes	The 12th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2022), S. Zouhdi (Ed.), p. 285, 2022	BibTeX
Xavier Garcia Santiago, Martin Hammerschmidt, Johannes Sachs, Sven Burger, Hyunah Kwon, Marvin Knöller, Tilo Arens, Peer Fischer, Ivan Fernandez-Corbaton, Carsten Rockstuhl	Toward maximally electromagnetically chiral scatterers at optical frequencies	ACS Photonics, Vol.9, p. 1954, 2022	BibTeX DOI arXiv
Eduardo Lopez-Fraguas, Felix Binkowski, Sven Burger, Sylvia Hagedorn, Braulio Garcia-Camara, Ricardo Vergaz, Christiane Becker, Phillip Manley	Tripling the light extraction efficiency of a deep ultraviolet LED using a nanostructured p-contact	Sci. Rep., Vol.12, p. 11480, 2022	BibTeX DOI
Jan Krüger, Phillip Manley, Lin Zschiedrich, Martin Hammerschmidt, Philipp-Immanuel Schneider, Rainer Köning, Bernd Bodermann	Untersuchung des Schwingungseinflusses auf gemessene Punktspreizfunktionen in der optischen Mikroskopie	Proc. DGaO, p. P5, 2022	BibTeX URN
Mihir Dass, Lilli Kuen, Gregor Posnjak, Sven Burger, Tim Liedl	Visible wavelength spectral tuning of absorption and circular dichroism of DNA-assembled Au/Ag core-shell nanorod assemblies	Mater. Adv., Vol.3, p. 3438, 2022	BibTeX DOI
2021
Nada Cvetkovic, Tim Conrad, Han Cheng Lie	A Convergent Discretisation Method for Transition Path Theory for Diffusion Processes	Multiscale Modeling & Simulation, 19(1), pp. 242-266, 2021	BibTeX DOI
Ralf Borndörfer, Fabian Danecker, Martin Weiser	A Discrete-Continuous Algorithm for Free Flight Planning	Algorithms, 14(1), p. 4, 2021 (preprint available as )	BibTeX DOI
Hans Christian Öttinger, Alberto Montefusco, Mark A. Peletier	A Framework of Nonequilibrium Statistical Mechanics. I. Role and Types of Fluctuations	Journal of Non-Equilibrium Thermodynamics, 46(1), pp. 1-13, 2021	BibTeX DOI
Alberto Montefusco, Mark A. Peletier, Hans Christian Öttinger	A Framework of Nonequilibrium Statistical Mechanics. II. Coarse-Graining	Journal of Non-Equilibrium Thermodynamics, 46(1), pp. 15-33, 2021	BibTeX DOI
Christoph Gorgulla, Krishna M. Padmanabha Das, Kendra E Leigh, Marco Cespugli, Patrick D. Fischer, Zi-Fu Wang, Guilhem Tesseyre, Shreya Pandita, Alex Shnapir, Anthony Calderaio, Colin Hutcheson, Minko Gechev, Alexander Rose, Noam Lewis, Erez Yaffe, Roni Luxenburg, Henry D. Herce, Vedat Durmaz, Thanos D. Halazonetis, Konstantin Fackeldey, Justin J. Patten, Alexander Chuprina, Igor Dziuba, Alla Plekhova, Yurii Moroz, Dmytro Radchenko, Olga Tarkhanova, Irina Yavnyuk, Christian C. Gruber, Ryan Yust, Dave Payne, Anders M. Näär, Mark N. Namchuk, Robert A. Davey, Gerhard Wagner, Jamie Kinney, Haribabu Arthanari	A Multi-Pronged Approach Targeting SARS-CoV-2 Proteins Using Ultra-Large Virtual Screening	iScience, 24(2), p. 102021, 2021	BibTeX DOI
Lucas Rickert, Timm Gao, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Heindel Tobias	A Quantum Key Distribution Testbed Using Plug&Play Telecom-Wavelength Single-Photons	Quantum Information and Measurement VI, p. M2C.1, OSA Technical Digest, 2021	BibTeX DOI
Anton Schiela, Matthias Stöcklein, Martin Weiser	A primal dual projection algorithm for efficient constraint preconditioning	SIAM Journal on Scientific Computing, 43(6), pp. A4095-A4120, 2021	BibTeX DOI
Andreas Bittracher, Christof Schütte	A probabilistic algorithm for aggregating vastly undersampled large Markov chains	Physica D: Nonlinear Phenomena, Vol.416, 2021 (preprint available as )	BibTeX URN DOI
Philipp-Immanuel Schneider, Xavier Garcia-Santiago, Benjamin Wiegand, Oliver Anton, Markus Krutzik, Carsten Rockstuhl, Sven Burger	Advances in Bayesian optimization for photonics and quantum atom optics applications	OSA Advanced Photonics Congress, p. JTh1E.2, OSA Technical Digest, 2021	BibTeX DOI
Jan-Hendrik Niemann, Stefanie Winkelmann, Sarah Wolf, Christof Schütte	Agent-based modeling: Population limits and large timescales	Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021	PDF BibTeX URN DOI
Konstantin Fackeldey, Jonas Röhm, Amir Niknejad, Surahit Chewle, Marcus Weber	Analyzing Raman Spectral Data without Separabiliy Assumption	Journal of Mathematical Chemistry, 3(59), pp. 575-596, 2021	BibTeX arXiv DOI
Yongtao Liu, Zhiguang Zhou, Fan Wang, Günter Kewes, Shihui Wen, Sven Burger, Majid Ebrahimi Wakiani, Peng Xi, Jiong Yang, Xusan Yang, Oliver Benson, Dayong Jin	Axial localization and tracking of self-interference nanoparticles by lateral point spread functions	Nat. Commun., Vol.12, p. 2019, 2021	BibTeX DOI
Xavier Garcia Santiago, Sven Burger, Carsten Rockstuhl, Philipp-Immanuel Schneider	Bayesian optimization with improved scalability and derivative information for efficient design of nanophotonic structures	J. Light. Technol., Vol.39, p. 167, 2021	BibTeX DOI arXiv
Alejandro Carderera, Sebastian Pokutta, Christof Schütte, Martin Weiser	CINDy: Conditional gradient-based Identification of Non-linear Dynamics – Noise-robust recovery	Journal of Computational and Applied Mathematics, 2021 (under review)	BibTeX arXiv
Florian Schäfer, T. J. Sullivan, Houman Owhadi	Compression, inversion, and approximate PCA of dense kernel matrices at near-linear computational complexity	Multiscale Modeling and Simulation, 19(2), pp. 688-730, 2021	BibTeX arXiv DOI
Susanne Röhl, Marcus Weber, Konstantin Fackeldey	Computing the minimal rebinding effect for non-reversible processes	Multiscale Modeling and Simulation, 19(1), pp. 460-477, 2021	BibTeX arXiv DOI
Felix Binkowski, Fridtjof Betz, Remi Colom, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger	Contour integral methods for resonance phenomena in nano-optics	The 11th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2021), S. Zouhdi, D. Pawlak, A. Kudelski (Eds.), p. 523, 2021	BibTeX
Margarita Kostre, Christof Schütte, Frank Noé, Mauricio del Razo Sarmina	Coupling Particle-Based Reaction-Diffusion Simulations with Reservoirs Mediated by Reaction-Diffusion PDEs	Multiscale Modeling & Simulation, 19(4), pp. 1659-1683, 2021	BibTeX arXiv DOI
Jan-Hendrik Niemann, Stefan Klus, Christof Schütte	Data-driven model reduction of agent-based systems using the Koopman generator	PLOS ONE, 16(5), 2021	BibTeX arXiv DOI
Peter Schnauber, Johannes Schall, Samir Bounouar, Kartik Srinivasan, Marcelo Davanco, Jin-Dong Song, Sven Burger, Sven Rodt, Stephan Reitzenstein	Deterministically fabricated quantum dot – waveguide systems for on-chip quantum optics	Proc. SPIE, p. 118060G, Vol.11806, 2021	BibTeX DOI
N. Alexia Raharinirina, Marcus Weber, Ralph Birk, Konstantin Fackeldey, Sarah M. Klasse, Tonio Sebastian Richter	Different Tools and Results for Correspondence Analysis	2021	BibTeX DOI
Andreas Bittracher, Stefan Klus, Boumediene Hamzi, Christof Schütte	Dimensionality Reduction of Complex Metastable Systems via Kernel Embeddings of Transition Manifolds	Journal of Nonlinear Science, Vol.31, 2021	BibTeX DOI
Phillip Manley, Michele Segantini, Doguscan Ahiboz, Martin Hammerschmidt, Georgios Arnaoutakis, Rowan W. MacQueen, Sven Burger, Christiane Becker	Double-layer metasurface for enhanced photon up-conversion	APL Photon., Vol.6, p. 036103, 2021	BibTeX DOI arXiv
Fatemeh Chegini, Alena Kopanicakova, Rolf Krause, Martin Weiser	Efficient Identification of Scars using Heterogeneous Model Hierarchies	EP Europace, Vol.23, pp. i113-i122, 2021	BibTeX DOI
Tong Wu, Denis Arrivault, Marc Duruflé, Alexandre Gras, Felix Binkowski, Sven Burger, Wei Yan, Philippe Lalanne	Efficient hybrid method for the modal analysis of optical microcavities and nanoresonators	J. Opt. Soc. Am. A, Vol.38, p. 1224, 2021	BibTeX DOI
Anton Pakhomov	Efficient modeling and optimization of surface second-harmonic generation from nanophotonic components	Doctoral thesis, Friedrich-Schiller-Universität Jena, Thomas Pertsch, Costantino De Angelis, Yuri Kivshar (Advisors), 2021	BibTeX DOI
Doguscan Ahiboz, Elina Andresen, Phillip Manley, Ute Resch Genger, Christian Würth, Christiane Becker	Enhanced Photon Upconversion Using Erbium-Doped Nanoparticles Interacting with Silicon Metasurfaces	IEEE 48th Photovoltaic Specialists Conference (PVSC), pp. 2008-2010, 2021	BibTeX DOI
Han Cheng Lie, T. J. Sullivan, Aretha Teckentrup	Error bounds for some approximate posterior measures in Bayesian inference	Numerical Mathematics and Advanced Applications ENUMATH 2019, pp. 275-283, 2021	BibTeX arXiv DOI
Renata Sechi, Alexander Sikorski, Marcus Weber	Estimation of the Koopman Generator by Newton's Extrapolation	Multiscale Modeling and Simulation, 19(2), pp. 758-774, 2021	BibTeX DOI
Alexander Mielke, Alberto Montefusco, Mark A. Peletier	Exploring families of energy-dissipation landscapes via tilting: three types of EDP convergence	Continuum Mechanics and Thermodynamics, Vol.33, pp. 611-637, 2021	BibTeX DOI
Horst-Holger Boltz, Jorge Kurchan, Andrea J. Liu	Fluctuation distributions of energy minima in complex landscapes	Physical Review Research, 3(1), p. 013061, 2021	BibTeX DOI
Luzie Helfmann, Natasa Djurdjevac Conrad, Ana Djurdjevac, Stefanie Winkelmann, Christof Schütte	From interacting agents to density-based modeling with stochastic PDEs	Communications in Applied Mathematics and Computational Science, 16(1), pp. 1-32, 2021 (preprint available as ZIB-Report 19-21)	PDF (ZIB-Report) BibTeX arXiv DOI
Anna Andrle, Philipp Hönicke, Grzegorz Gwalt, Philipp-Immanuel Schneider, Yves Kayser, Frank Siewert, Victor Soltwisch	GIXRF and machine learning as metrological tools for shape and element sensitive reconstructions of periodic nanostructures	Proc. SPIE, Vol.11611, p. 116110R, 2021	BibTeX DOI
Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende	HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids	Euro-Par 2020: Parallel Processing Workshops., pp. 185-196, 2021	BibTeX DOI
Felix Binkowski, Tong Wu, Philippe Lalanne, Sven Burger, Alexander O. Govorov	Hot Electron Generation through Near-Field Excitation of Plasmonic Nanoresonators	ACS Photonics, Vol.8, p. 1243, 2021	BibTeX DOI arXiv
Jakob Schneck, Martin Weiser, Florian Wende	Impact of mixed precision and storage layout on additive Schwarz smoothers	Numerical Linear Algebra with Applications, 28(4), 2021 (preprint available as ZIB-Report 18-62)	PDF (ZIB-Report) BibTeX DOI
Sebastian Götschel, Anton Schiela, Martin Weiser	Kaskade 7 - a Flexible Finite Element Toolbox	Computers and Mathematics with Applications, Vol.81, pp. 444-458, 2021 (preprint available as ZIB-Report 19-48)	PDF (ZIB-Report) BibTeX DOI
Ana Djurdjevac	Linear Parabolic Problems in Random Moving Domains	9(2), pp. 848-879, 2021	BibTeX DOI
Isabel Nitzke, Konstantin Fackeldey, Jadran Vrabec	Long range corrections for inhomogeneous fluids containing a droplet or a bubble	Molecular Simulation, pp. 1-14, 2021	BibTeX DOI
Kevin Martens, Felix Binkowski, Linh Nguyen, Li Hu, Alexander O. Govorov, Sven Burger, Tim Liedl	Long- and Short-Ranged Chiral Interactions in DNA Assembled Plasmonic Chains	Nat. Commun., Vol.12, p. 2025, 2021	BibTeX arXiv DOI
Sophie Fischer, Rainald Ehrig, Stefan Schäfer, Enrico Tronci, Toni Mancini, Marcel Egli, Fabian Ille, Tillmann H. C. Krüger, Brigitte Leeners, Susanna Röblitz	Mathematical Modelling and Simulation Provides Evidence for New Strategies of Ovarian Stimulation	Frontiers in Endocrinology, Vol.12, 2021	BibTeX DOI
Stefanie Winkelmann, Johannes Zonker, Christof Schütte, Natasa Djurdjevac Conrad	Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading	Mathematical Biosciences, Vol.336, 2021	BibTeX DOI arXiv
Niklas Wulkow, Péter Koltai, Christof Schütte	Memory-Based Reduced Modelling and Data-Based Estimation of Opinion Spreading	Journal of Nonlinear Science, Vol.31, 2021	BibTeX DOI
Doguscan Ahiboz, Elina Andresen, Phillip Manley, Ute Resch-Genger, Christian Würth, Christiane Becker	Metasurface-Enhanced Photon Upconversion upon 1550 nm Excitation	Adv. Opt. Mater., Vol.9, p. 2101285, 2021	BibTeX DOI
Anton V. Pakhomov, Martin Hammerschmidt, Sven Burger, Thomas Pertsch, Frank Setzpfand	Modeling of surface-induced second-harmonic generation from multilayer structures by the transfer matrix method	Opt. Express, Vol.29, p. 9098, 2021	BibTeX DOI
Sourav Ray, Arne Thies, Vikram Sunkara, Hanna Wulkow, Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann	Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design	ZIB-Report 21-19	PDF BibTeX URN
Rolf Krause, Martin Weiser	Multilevel augmented Lagrangian solvers for overconstrained contact formulations	ESAIM: ProcS, pp. 175-184, Vol.71, 2021	BibTeX DOI
Christiane Becker, Klaus Jäger, Sven Burger	Nanophotonics for Solar Energy	Sol. Energy Mater. Sol. Cells, Vol.221, p. 110916, 2021	BibTeX DOI
Konstantin Fackeldey, Christoph Gorgulla, Marcus Weber	Neue Medikamente dank Supercomputern	Spektrum der Wissenschaft, pp. 40-46, 2021	BibTeX
Ana Djurdjevac, Carsten Gräser, Philip J. Herbert	Non-stationary incompressible linear fluid equations in a moving domain	arXiv, 2021	BibTeX arXiv
Xavier Garcia Santiago	Numerical methods for shape optimization of photonic nanostructures	Doctoral thesis, Karlsruher Institut für Technologie, Carsten Rockstuhl (Advisor), 2021	BibTeX DOI
Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz	Objective priors in the empirical Bayes framework	Scandinavian Journal of Statistics, 48(4), pp. 1212-1233, 2021	BibTeX DOI
Cem Güney Torun, Philipp-Immanuel Schneider, Martin Hammerschmidt, Sven Burger, Joseph H.D. Munns, Tim Schröder	Optimized diamond inverted nanocones for enhanced color center to fiber coupling	Appl. Phys. Lett., Vol.118, p. 234002, 2021	BibTeX DOI arXiv
Peter Tillmann, Benedikt Bläsi, Sven Burger, Martin Hammerschmidt, Oliver Höhn, Christiane Becker, Klaus Jäger	Optimizing metal grating back reflectors for III-V-on-silicon multijunction solar cells	Opt. Express, Vol.29, p. 22517, 2021	BibTeX DOI
Klaus Jäger, Peter Tillmann, Eugene A. Katz, Christiane Becker	Perovskite/silicon tandem solar cells: Effect of luminescent coupling and bifaciality	Sol. RRL, Vol.5, p. 2000628, 2021	BibTeX arXiv DOI
Dmitrii Perevoznik, Surajit Bose, Sven Burger, Ayhan Demircan, Uwe Morgner	Photonic components in polymers made by femtosecond pulses	Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference (CLEO/Europe-EQEC), p. 1, 2021	BibTeX DOI
Hanna Wulkow, Tim Conrad, Natasa Djurdjevac Conrad, Sebastian A. Müller, Kai Nagel, Christof Schütte	Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts	PLOS One, 16(4), 2021	BibTeX DOI
Klaus Jäger, Johannes Sutter, Martin Hammerschmidt, Philipp-Immanuel Schneider, Christiane Becker	Prospects of light management in perovskite/silicon tandem solar cells	Nanophotonics, Vol.10, p. 1991, 2021	BibTeX DOI
Horst-Holger Boltz, Alexei Sirbu, Nina Stelzer, Martin J. Lohse, Christof Schütte, Paolo Annibale	Quantitative spectroscopy of single molecule interaction times	Optic Letters, 46(7), pp. 1538-1541, 2021	BibTeX DOI
Fridtjof Betz, Felix Binkowski, Sven Burger	RPExpand: Software for Riesz projection expansion of resonance phenomena	SoftwareX, Vol.15, p. 100763, 2021	BibTeX DOI
Fridtjof Betz, Felix Binkowski, Sven Burger	RPExpand: Software for Riesz projection expansion of resonance phenomena [Source Code]	2021	BibTeX DOI
Matthias Plock, Sven Burger, Philipp-Immanuel Schneider	Recent advances in Bayesian optimization with applications to parameter reconstruction in optical nano-metrology	Proc. SPIE, Vol.11783, p. 117830J, 2021	BibTeX DOI arXiv
Peter Tillmann, Klaus Jäger, Eugene Katz, Christiane Becker	Relaxed current-matching constraints by bifacial operation and luminescent coupling in perovskite/silicon tandem solar cells	2021 IEEE 48th Photovoltaic Specialists Conference (PVSC), p. 1086, 2021	BibTeX DOI
Anna Andrle, Philipp Hönicke, Grzegorz Gwalt, Philipp-Immanuel Schneider, Yves Kayser, Frank Siewert, Victor Soltwisch	Shape- and Element-Sensitive Reconstruction of Periodic Nanostructures with Grazing Incidence X-ray Fluorescence Analysis and Machine Learning	Nanomaterials, Vol.11, p. 1647, 2021	BibTeX DOI
Brian Stout, Remi Colom, Nicolas Bonod, Ross C McPhedran	Spectral expansions of open and dispersive optical systems: Gaussian regularization and convergence	New J. Phys., Vol.23, p. 083004, 2021	BibTeX DOI
Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling	Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles	J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021	BibTeX DOI
Alexander Sikorski, Marcus Weber, Christof Schütte	The Augmented Jump Chain	Advanced Theory and Simulations, 4(4), 2021	BibTeX arXiv DOI
Ilja Klebanov, Björn Sprungk, T. J. Sullivan	The linear conditional expectation in Hilbert space	Bernoulli, 27(4), pp. 2299-2299, 2021	BibTeX arXiv DOI
Pietro Tierno, Tom H. Johansen, Arthur Straube	Thermally active nanoparticle clusters enslaved by engineered domain wall traps	Nature Commun., Vol.12, p. 5813, 2021	BibTeX DOI
Philippe Miron, Francisco Beron-Vera, Luzie Helfmann, Péter Koltai	Transition paths of marine debris and the stability of the garbage patches	Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021	BibTeX arXiv DOI
Ariane Ernst, Christof Schütte, Stephan Sigrist, Stefanie Winkelmann	Variance of filtered signals: Characterization for linear reaction networks and application to neurotransmission dynamics	ZIB-Report 21-15 (Mathematical Biosciences 343:108760)	PDF BibTeX URN DOI
Dmitrii Perevoznik, Surajit Bose, Sven Burger, Ayhan Demircan, Uwe Morgner	Writing Photonic Components in Polymers Using Femtosecond Pulses	Conference on Lasers and Electro-Optics (CLEO), p. ATh4P.4, OSA Technical Digest, 2021	BibTeX DOI
2020
Felix Binkowski, Lin Zschiedrich, Sven Burger	A Riesz-projection-based method for nonlinear eigenvalue problems	J. Comput. Phys., Vol.419, p. 109678, 2020	BibTeX DOI arXiv
Ilja Klebanov, Ingmar Schuster, T. J. Sullivan	A rigorous theory of conditional mean embeddings	SIAM Journal on Mathematics of Data Science, 2(3), pp. 583-606, 2020	BibTeX arXiv DOI
Andreas Bittracher, Christof Schütte	A weak characterization of slow variables in stochastic dynamical systems	Advances in Dynamics, Optimization and Computation. Series: Studies in Systems, Decision and Control. A volume dedicated to Michael Dellnitz on the occasion of his 60th birthday, Vol.304, pp. 132-150, Oliver Junge, O. Schütze, Gary Froyland, S. Ober-Blobaum, E. Padberg-Gehle (Eds.), Springer International, 2020, ISBN: 978-3-030-51264-4	BibTeX DOI
Christoph Gorgulla, Konstantin Fackeldey, Gerhard Wagner, Haribabu Arthanari	Accounting of Receptor Flexibility in Ultra-Large Virtual Screens with VirtualFlow Using a Grey Wolf Optimization Method	Supercomputing Frontiers and Innovations, 7(3), pp. 4-12, 2020	BibTeX DOI
Luc Bonnet, Jean-Luc Akian, Éric Savin, T. J. Sullivan	Adaptive reconstruction of imperfectly-observed monotone functions, with applications to uncertainty quantification	Algorithms, 13(8), p. 196, 2020	BibTeX DOI arXiv
Christoph Gorgulla, Andras Boeszoermnyi, Zi-Fu Wang, Patrick D. Fischer, Paul Coote, Krishna M. Padmanabha Das, Yehor S. Malets, Dmytro S. Radchenko, Yurii Moroz, David A. Scott, Konstantin Fackeldey, Moritz Hoffmann, Iryna Iavniuk, Gerhard Wagner, Haribabu Arthanari	An open-source drug discovery platform enables ultra-large virtual screens	Nature, Vol.580, pp. 663-668, 2020	BibTeX DOI
Ralph L. Stoop, Arthur Straube, Tom H. Johansen, Pietro Tierno	Collective directional locking of colloidal monolayers on a periodic substrate	Phys. Rev. Lett., Vol.124, p. 058002, 2020	BibTeX DOI
Vikram Sunkara, Gitta A. Heinz, Frederik F. Heinrich, Pawel Durek, Ali Mobasheri, Mir-Farzin Mashreghi, Annemarie Lang	Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint	bioarxiv (Accepted in Osteoarthr. Cartil.), 2020	BibTeX DOI
Hans Kersting, T. J. Sullivan, Philipp Hennig	Convergence rates of Gaussian ODE filters	Statistics and Computing, Vol.30, pp. 1791-1816, 2020	BibTeX arXiv DOI
Marcus Weber, Weitere Autoren	DIN SPEC 2343: Übertragung von sprachbasierten Daten zwischen Künstlichen Intelligenzen - Festlegung von Parametern und Formaten	Beuth Verlag, 2020	BibTeX
Stefan Klus, Feliks Nüske, Sebastian Peitz, Jan-Hendrik Niemann, Cecilia Clementi, Christof Schütte	Data-driven approximation of the Koopman generator: Model reduction, system identification, and control	Physica D: Nonlinear Phenomena, Vol.406, 2020 (epub ahead of print)	BibTeX DOI
Klaus Jäger, Peter Tillmann, Christiane Becker	Detailed illumination model for bifacial solar cells	Opt. Express, Vol.28, p. 4751, 2020	BibTeX DOI
Sven Rodt, Philipp-Immanuel Schneider, Lin Zschiedrich, Tobias Heindel, Samir Bounouar, Markus Kantner, Thomas Koprucki, Uwe Bandelow, Sven Burger, Stephan Reitzenstein	Deterministic Quantum Devices for Optical Quantum Communication	Semiconductor Nanophotonics, Michael Kneissl, Andreas Knorr, Stephan Reitzenstein, Axel Hoffmann (Eds.), Springer: Cham, pp. 285-359, 2020	BibTeX DOI
Paweł Mrowiński, Peter Schnauber, Arsenty Kaganskiy, Johannes Schall, Sven Burger, Sven Rodt, Stephan Reitzenstein	Directional single-photon emission from deterministic quantum dot waveguide structures	Phys. Status Solidi RRL, Vol.14, p. 2000115, 2020	BibTeX DOI arXiv
Surahit Chewle, Franziska Emmerling, Marcus Weber	Effect of choice of solvent on crystallization pathway of Paracetamol: An experimental and theoretical case study	Crystals, 10(12), p. 1107, 2020	BibTeX DOI
Nando Farchmin, Martin Hammerschmidt, Philipp-Immanuel Schneider, Matthias Wurm, Bernd Bodermann, Markus Bär, Sebastian Heidenreich	Efficient Bayesian inversion for shape reconstruction of lithography masks	J. Micro/Nanolith. MEMS MOEMS, Vol.19, p. 024001, 2020	BibTeX DOI
Luzie Helfmann, Enric Ribera Borrell, Christof Schütte, Peter Koltai	Extending Transition Path Theory: Periodically Driven and Finite-Time Dynamics	Journal of Nonlinear Science, Vol.30, pp. 3321-3366, 2020	BibTeX DOI
Mika Pflüger, R. Joseph Kline, Analia Fernández Herrero, Martin Hammerschmidt, Victor Soltwisch, Michael Krumrey	Extracting dimensional parameters of gratings produced with self-aligned multiple patterning using grazing-incidence small-angle x-ray scattering	J. Micro Nanolithogr. MEMS MOEMS, Vol.19, p. 014001, 2020	BibTeX DOI arXiv
Mika Pflüger, R Joseph Kline, Analía Fernández Herrero, Martin Hammerschmidt, Victor Soltwisch, Michael Krumrey	Extracting dimensional parameters of gratings produced with self-aligned multiple patterning using grazing-incidence small-angle x-ray scattering [Source Code]	2020	BibTeX DOI
Anton Pakhomov, Franz Löchner, Lin Zschiedrich, Sina Saravi, Martin Hammerschmidt, Sven Burger, Thomas Pertsch, Frank Setzpfand	Far-field polarization signatures of surface optical nonlinearity in noncentrosymmetric semiconductors	Sci. Rep., Vol.10, p. 10545, 2020	BibTeX DOI
Martin Hammerschmidt, Sandra Döpking, Sven Burger, Sebastian Matera	Field Heterogeneities and Their Impact on Photocatalysis: Combining Optical and Kinetic Monte Carlo Simulations on the Nanoscale	J. Phys. Chem. C, Vol.124, p. 3177, 2020 (preprint available as ZIB-Report 17-20)	PDF (ZIB-Report) BibTeX DOI
Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker	Flat optics in high numerical aperture broadband imaging systems	J. Opt., Vol.22, p. 065607, 2020	BibTeX DOI
Anna Musiał, Kinga Żołnacz, Nicole Srocka, Oleh Kravets, Jan Große, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wojcik, Paweł Mergo, Kamil Dybka, Mariusz Dyrkacz, Michal Dlubek, Kristian Lauritsen, Andreas Bülter, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger, Sven Rodt, Wacław Urbanczyk, Grzegorz Sek, Stephan Reitzenstein	Front Cover: Plug&Play Fiber‐Coupled 73 kHz Single‐Photon Source Operating in the Telecom O‐Band (Adv. Quantum Technol. 6/2020)	Adv. Quantum Technol., Vol.3, p. 2070061, 2020	BibTeX DOI
Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker	General design formalism for highly efficient flat optics for broadband applications	Opt. Express, Vol.28, p. 6452, 2020	BibTeX DOI
Bernhard Reuter	Generalisierte Markov-Modellierung	Springer Spektrum, Wiesbaden, 2020, ISBN: 978-3-658-29711-4	BibTeX DOI
Annemarie Lang, Sarah Helfmeier, Jonathan Stefanowski, Aditi Kuppe, Vikram Sunkara, Moritz Pfeiffenberger, Angelique Wolter, Alexandra Damerau, Shabnam Hemmati-Sadeghi, Jochen Ringe, Rainer Haag, Anja E. Hauser, Max Löhning, Carsten Perka, Georg N. Duda, Paula Hoff, Katharina Schmidt-Bleek, Timo Gaber, Frank Buttgereit	HIF-stabilization prevents delayed fracture healing	bioarxiv, 2020 (under review)	BibTeX DOI
Joshua Feis, Dominik Beutel, Julian Köpfler, Xavier Garcia Santiago, Carsten Rockstuhl, Martin Wegener, Ivan Fernandez-Corbaton	Helicity-Preserving Optical Cavity Modes for Enhanced Sensing of Chiral Molecules	Phys. Rev. Lett., Vol.124, p. 033201, 2020	BibTeX DOI
Larousse Khosravi Khorashad, Lucas V. Besteiro, Miguel Correa-Duarte, Sven Burger, Zhiming M. Wang, Alexander O. Govorov	Hot electrons generated in chiral plasmonic nanocrystals as a mechanism for surface photochemistry and chiral growth	J. Am. Chem. Soc., Vol.142, p. 4193, 2020	BibTeX DOI
Sourav Ray, Vikram Sunkara, Christof Schütte, Marcus Weber	How to calculate pH-dependent binding rates for receptor-ligand systems based on thermodynamic simulations with different binding motifs	Molecular Simulation, 46(18), pp. 1443-1452, 2020 (preprint available as )	BibTeX DOI
Robert Julian Rabben, Sourav Ray, Marcus Weber	ISOKANN: Invariant subspaces of Koopman operators learned by a neural network	The Journal of Chemical Physics, 153(11), p. 114109, 2020	BibTeX DOI
Felix Baumann	Impact of Contact Surfaces on the Death Estimation	Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Martin Weiser (Advisors), 2020	BibTeX
Philipp Tockhorn, Johannes Sutter, Rémi Colom, Lukas Kegelmann, Amran Al-Ashouri, Marcel Roß, Klaus Jäger, Thomas Unold, Sven Burger, Steve Albrecht, Christiane Becker	Improved Quantum Efficiency by Advanced Light Management in Nanotextured Solution-Processed Perovskite Solar Cells	ACS Photonics, Vol.7, p. 2589, 2020	BibTeX DOI
Vikram Sunkara, N. Alexia Raharinirina, Felix Peppert, Max von Kleist, Christof Schütte	Inferring Gene Regulatory Networks from Single Cell RNA-seq Temporal Snapshot Data Requires Higher Order Moments	ZIB-Report 20-25	PDF BibTeX URN
Fridtjof Betz	Investigation and application of contour integral methods for resonance expansion in nanophotonics	Master's thesis, Freie Universität Berlin, Sven Burger, Ana-Nicoleta Bondar (Advisors), 2020	BibTeX
Marie-Christin Weber, Lisa Fischer, Alexandra Damerau, Igor Ponomarev, Moritz Pfeiffenberger, Timo Gaber, Sebastian Götschel, Jens Lang, Susanna Röblitz, Frank Buttgereit, Rainald Ehrig, Annemarie Lang	Macroscale mesenchymal condensation to study cytokine-driven cellular and matrix-related changes during cartilage degradation	Biofabrication, 12(4), 2020	BibTeX DOI
Ilja Klebanov, Ingmar Schuster	Markov Chain Importance Sampling - a highly efficient estimator for MCMC	Journal of Computational and Graphical Statistics, 2020 (epub ahead of print)	BibTeX DOI
Neveen Ali Salem Eshtewy	Mathematical Modeling of Metabolic-Genetic Networks	Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2020	BibTeX
Christian Würth, Phillip Manley, Robert Voigt, Doguscan Ahiboz, Christiane Becker, Ute Resch-Genger	Metasurface enhanced sensitized photon upconversion: towards highly efficient low power upconversion applications and nano-scale E-field sensors	Nano Lett., Vol.20, p. 6682, 2020	BibTeX DOI
Peter Tillmann, Klaus Jäger, Christiane Becker	Minimising levelised cost of electricity of bifacial solar panel arrays using Bayesian optimisation	Sustain. Energy Fuels, Vol.4, p. 254, 2020	BibTeX DOI
Phillip Semler	Mixed finite elements in cloth simulation	Master's thesis, Beuth Hochschule für Technik Berlin, Martin Weiser, Frank Haußer (Advisors), 2020	BibTeX
Rémi Colom, Brian Stout, Nicolas Bonod	Modal Expansion of the Impulse Response Function for Predicting the Time Dynamics of Open Optical Cavities	arXiv, 2020 (under review)	BibTeX arXiv
Felix Binkowski, Fridtjof Betz, Rémi Colom, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Modal expansion of optical far-field quantities using quasinormal modes	EPJ Web Conf., p. 05007, Vol.238, 2020	BibTeX DOI
Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz	Model-based exploration of the impact of glucose metabolism on the estrous cycle dynamics in dairy cows	Biology Direct, Vol.15, 2020	BibTeX DOI
Daniel Werdehausen, Xavier Garcia Santiago, Sven Burger, Isabelle Staude, Thomas Pertsch, Carsten Rockstuhl, Manuel Decker	Modeling Optical Materials at the Single Scatterer Level: The Transition from Homogeneous to Heterogeneous Materials	Adv. Theory Simul., Vol.3, p. 2000192, 2020	BibTeX DOI
Markus Kantner, Theresa Höhne, Thomas Koprucki, Sven Burger, Hans-Jürgen Wünsche, Frank Schmidt, Alexander Mielke, Uwe Bandelow	Multi-dimensional modeling and simulation of semiconductor nanophotonic devices	Semiconductor Nanophotonics, Michael Kneissl, Andreas Knorr, Stephan Reitzenstein, Axel Hoffmann (Eds.), Springer: Cham, pp. 241-283, 2020	BibTeX DOI
Phillip Manley, Sebastian Walde, Sylvia Hagedorn, Martin Hammerschmidt, Sven Burger, Christiane Becker	Nanopatterned Sapphire Substrates in Deep-UV LEDs: Is there an Optical Benefit?	Opt. Express, Vol.28, p. 3619, 2020	BibTeX DOI
Peter Deuflhard, Martin Weiser	Numerische Mathematik 3. Adaptive Lösung partieller Differentialgleichungen	de Gruyter, 2, 2020, ISBN: 978-3-11-069168-9	BibTeX DOI
Philip Scott, Xavier Garcia Santiago, Dominik Beutel, Carsten Rockstuhl, Martin Wegener, Ivan Fernandez-Corbaton	On enhanced sensing of chiral molecules in optical cavities	Appl. Phys. Rev., Vol.7, p. 041413, 2020	BibTeX DOI
Chris Oates, Jon Cockayne, Dennis Prangle, T. J. Sullivan, Mark Girolami	Optimality criteria for probabilistic numerical methods	Multivariate Algorithms and Information-Based Complexity, Vol.27, pp. 65-88, F. J. Hickernell, P. Kritzer (Eds.), De Gruyter, 2020	BibTeX arXiv DOI
Anna Musiał, Kinga Żołnacz, Nicole Srocka, Oleh Kravets, Jan Große, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wojcik, Paweł Mergo, Dybka Kamil, Mariusz Dyrkacz, Michal Dlubek, Kristian Lauritsen, Andreas Bülter, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger, Sven Rodt, Wacław Urbanczyk, Grzegorz Sek, Stephan Reitzenstein	Plug&play fibre-coupled 73 kHz single-photon source operating in the telecom O-band	Adv. Quantum Technol., Vol.3, p. 2000018, 2020	BibTeX DOI arXiv
Liping Shi, Andrey B. Evlyukhin, Carsten Reinhardt, Ihar Babushkin, Vladimir A. Zenin, Sven Burger, Radu Malureanu, Boris N. Chichkov, Uwe Morgner, Milutin Kovacev	Progressive Self-Boosting Anapole-Enhanced Deep-Ultraviolet Third Harmonic During Few-Cycle Laser Radiation	ACS Photonics, Vol.7, p. 1655, 2020	BibTeX DOI
Sónia Alves, Rainald Ehrig, Peter C. Raffalt, Alwina Bender, Georg N. Duda, Alison N. Agres	Quantifying Asymmetry in Gait: A Weighted Universal Symmetry Index to Evaluate 3D Ground Reaction Forces	Frontiers in Bioengineering and Biotechnology, 2020	BibTeX
Thomas Siefke, Carol Hurtado, Johannes Dickmann, Walter Dickmann, Tim Käseberg, Jan Meyer, Sven Burger, Uwe Zeitner, Bernd Bodermann, Stefanie Kroker	Quasi-bound states in the continuum for deep subwavelength structural information retrieval for DUV nano-optical polarizers	Opt. Express, Vol.28, p. 23122, 2020	BibTeX DOI
Rémi Colom, Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Quasi-normal mode expansion as a tool for the design of nanophotonic devices	EPJ Web Conf., p. 05008, Vol.238, 2020	BibTeX DOI
Felix Binkowski, Fridtjof Betz, Rémi Colom, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Quasinormal mode expansion of optical far-field quantities	Phys. Rev. B, Vol.102, p. 035432, 2020	BibTeX arXiv DOI
Arthur Straube, Bartosz G. Kowalik, Roland R. Netz, Felix Höfling	Rapid onset of molecular friction in liquids bridging between the atomistic and hydrodynamic pictures	Commun. Phys., Vol.3, p. 126, 2020	BibTeX DOI
Hanna Wulkow	Regularization of Elliptic Partial Differential Equations using Neural Networks	Master's thesis, Freie Universität Berlin, Christof Schütte, Martin Weiser (Advisors), 2020	BibTeX
Narendra Lagumaddepalli Venkatareddy	Revealing secrets of mussel-glue mimetic peptides - From advanced NMR to computational process modelling	Doctoral thesis, Humboldt-Universität zu Berlin, Hans Börner, Marcus Weber (Advisors), 2020	BibTeX
Philipp Gutsche, Xavier Garcia Santiago, Philipp-Immanuel Schneider, Kevin McPeak, Manuel Nieto-Vesperinas, Sven Burger	Role of Geometric Shape in Chiral Optics	Symmetry, Vol.12, p. 158, 2020	BibTeX DOI arXiv
Klaus Jäger, Peter Tillmann, Eugene A. Katz, Christiane Becker	Simulating bifacial perovskite/silicon tandem solar cells in large PV fields	OSA Advanced Photonics Congress, p. PvTh1G.3, OSA Technical Digest, 2020	BibTeX DOI
Jan Möller, Ali Isbilir, Titiwat Sungkaworn, Brenda Osberg, Christos Karathanasis, Vikram Sunkara, Eugene O Grushevsky, Andreas Bock, Paolo Annibale, Mike Heilemann, Christof Schütte, Martin J. Lohse	Single molecule mu-opioid receptor membrane-dynamics reveal agonist-specific dimer formation with super-resolved precision	Nature Chemical Biology, Vol.16, pp. 946-954, 2020	BibTeX DOI
Mattes Mollenhauer, Ingmar Schuster, Stefan Klus, Christof Schütte	Singular Value Decomposition of Operators on Reproducing Kernel Hilbert Spaces	Advances om Dynamics, Optimization and Computation. Series: Studies in Systems, Decision and Control. A volume dedicated to Michael Dellnitz on his 60th birthday, Vol.304, pp. 109-131, Oliver Junge, O. Schütze, Gary Froyland, S. Ober-Blobaum, K. Padberg-Gehle (Eds.), Springer International, 2020, ISBN: 978-3-030-51264-4	BibTeX DOI
Anna Musial, Kinga Zolnacz, Nicole Srocka, Oleh Kravets, Jan Große, Philipp-Immanuel Schneider, Jacek Olszewski, Krzystof Poturaj, Grzegorz Wojcik, Pawel Mergo, Kamil Dybka, Mariusz Dyrkacz, Michal Dlubek, Sven Rodt, Sven Burger, Lin Zschiedrich, Waclaw Urbanczyk, Grzegorz Sek, Stephan Reitzenstein	Stand-alone quantum dot-based single-photon source operating at telecommunication wavelengths	10th International Conference on Spontaneous Coherence in Excitonic Systems ICSCE10, p. 39, 2020	BibTeX
Stefanie Winkelmann, Christof Schütte	Stochastic Dynamics in Computational Biology	Springer International Publishing, 2020, ISBN: 978-3-030-62386-9	BibTeX DOI
José Villatoro, Martin Zühlke, Daniel Riebe, Toralf Beitz, Marcus Weber, Hans-Gerd Löhmannsröben	Sub-ambient pressure IR-MALDI ion mobility spectrometer for the determination of low and high field mobilities	Analytical and Bioanalytical Chemistry, Vol.412, pp. 5247-5260, 2020	BibTeX DOI
Fabian Becker, Natasa Djurdjevac Conrad, Raphael A. Eser, Luzie Helfmann, Brigitta Schütt, Christof Schütte, Johannes Zonker	The Furnace and the Goat—A spatio-temporal model of the fuelwood requirement for iron metallurgy on Elba Island, 4th century BCE to 2nd century CE	PLOS ONE, Vol.15, pp. 1-37, 2020	BibTeX DOI
Daniel J. Laydon, Vikram Sunkara, Lies Boelen, Charles R. M. Bangham, Becca Asquith	The relative contributions of infectious and mitotic spread to HTLV-1 persistence	PLOS Computational Biology, 2020	BibTeX DOI
2019
Jan-Hendrik Niemann	A Dynamic Memory Approach for Consensus Problems with Packet Loss	Master's thesis, Technische Universität Hamburg-Harburg, Furugh Mirali (Advisor), 2019	BibTeX
Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz	A Mathematical Model for the Influence of Glucose-Insulin Dynamics on the Estrous Cycle in Dairy Cows	ZIB-Report 19-22	PDF BibTeX URN
Mohamed Omari	A Mathematical Model of Bovine Metabolism and Reproduction: Application to Feeding Strategies, Drug Administration and Experimental Design	Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019	BibTeX
Chris Oates, T. J. Sullivan	A modern retrospective on probabilistic numerics	Statistics and Computing, 29(6), pp. 1335-1351, 2019	BibTeX arXiv DOI
Mohamed Omari, Julia Plöntzke, Susanna Röblitz	A pharmacokinetic-pharmacodynamic model for single dose administration of Dexamethasone in dairy cows	ZIB-Report 19-53	PDF BibTeX URN
Florian Graf, Joshua Feis, Xavier Garcia Santiago, Martin Wegener, Carsten Rockstuhl, Ivan Fernandez-Corbaton	Achiral, Helicity Preserving, and Resonant Structures for Enhanced Sensing of Chiral Molecules	ACS Photonics, Vol.6, p. 482, 2019	BibTeX DOI
Lisa Gaedke-Merzhäuser	Adaptive Multigrid Solvers for Space-Time Discretisations	Master's thesis, Freie Universität Berlin, Christof Schütte, Rolf Krause, Martin Weiser (Advisors), 2019	BibTeX
Vikram Sunkara	Algebraic Expressions of Conditional Expectations in Gene Regulatory Networks	Journal of Mathematical Biology, pp. 1779-1829, 2019	PDF BibTeX URN DOI
Sebastian Götschel, Michael L. Minion	An Efficient Parallel-in-Time Method for Optimization with Parabolic PDEs	SIAM J. Sci. Comput., 41(6), pp. C603-C626, 2019 (preprint available as ZIB-Report 19-04)	PDF (ZIB-Report) BibTeX DOI
Felix Binkowski, Lin Zschiedrich, Sven Burger	An auxiliary field approach for computing optical resonances in dispersive media	J. Eur. Opt. Soc.-Rapid, Vol.15, p. 3, 2019	BibTeX DOI
Pooja Gupta, Sarah Peter, Markus Jung, Astrid Lewin, Georg Hemmrich-Stanisak, Andre Franke, Max von Kleist, Christof Schütte, Ralf Einspanier, Soroush Sharbati, Jennifer zur Bruegge	Analysis of long non-coding RNA and mRNA expression in bovine macrophages brings up novel 2 aspects of Mycobacterium avium subspecies paratuberculosis infections	Scientific Reports in Nature, Vol.9, 2019	BibTeX DOI
Lara Hoffmann	Automating PCCA+ applied to Eye-Tracking Data	Master's thesis, Technische Universität Berlin, Marcus Weber (Advisor), 2019	BibTeX
Jon Cockayne, Chris Oates, T. J. Sullivan, Mark Girolami	Bayesian Probabilistic Numerical Methods	SIAM Review, 61(4), pp. 756-789, 2019	BibTeX arXiv DOI
Philipp-Immanuel Schneider, Xavier Garcia Santiago, Victor Soltwisch, Martin Hammerschmidt, Sven Burger, Carsten Rockstuhl	Benchmarking five global optimization approaches for nano-optical shape optimization and parameter reconstruction	ACS Photonics, Vol.6, p. 2726, 2019	BibTeX DOI arXiv
Robert Julian Rabben	Bestimmung invarianter Unterräume des Koopman-Operators einer Overdamped Langevin-Dynamik mithilfe eines Muli-Layer Neural Networks	Bachelor's thesis, Technische Universität Berlin, Marcus Weber (Advisor), 2019	BibTeX
Seyma Boz	Classification of the toxicity profile of the withdrawn drugs using computational prediction platform ProTox-II	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019	BibTeX
Annemarie Lang, Lisa Fischer, Marie-Christin Weber, Timo Gaber, Rainald Ehrig, Susanna Röblitz, Frank Buttgereit	Combining in vitro simulation and in silico modelling towards a sophisticated human osteoarthritis model	Osteoarthritis and Cartilage, Vol.27, p. S183, 2019	BibTeX DOI
Sebastian Götschel, Martin Weiser	Compression Challenges in Large Scale Partial Differential Equation Solvers	Algorithms, 12(9), p. 197, 2019 (preprint available as ZIB-Report 19-32)	PDF (ZIB-Report) BibTeX DOI
Natalia Ernst, Konstantin Fackeldey, Andrea Volkamer, Oliver Opatz, Marcus Weber	Computation of temperature-dependent dissociation rates of metastable protein–ligand complexes	Molecular Simulation, 45(11), pp. 904-911, 2019	BibTeX DOI
Ole Wachsmann	Computational Models for the prediction of drug-induced Nephrotoxicity	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019	BibTeX
Felix Binkowski, Lin Zschiedrich, Sven Burger	Computing Optical Resonances in Plasmonic Systems Using a Contour Integral Method	Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 1068, 2019	BibTeX
Sven Burger, Felix Binkowski, Lin Zschiedrich	Computing resonances in nano-photonic devices using Riesz-projection-based methods	The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 92, 2019	BibTeX
T. J. Sullivan	Contributed discussion on the article "A Bayesian conjugate gradient method"	Bayesian Analysis, 14(3), pp. 985-989, 2019	BibTeX arXiv DOI
Jon Wilson, Philipp Gutsche, Sven Herrmann, Sven Burger, Kevin McPeak	Correlation of circular differential optical absorption with geometric chirality in plasmonic meta-atoms	Opt. Express, Vol.27, p. 5097, 2019	BibTeX DOI
Xavier Garcia Santiago, Martin Hammerschmidt, Sven Burger, Carsten Rockstuhl, Ivan Fernandez-Corbaton, Lin Zschiedrich	Decomposition of scattered electromagnetic fields into vector spherical wave functions on surfaces with general shapes	Phys. Rev. B, Vol.99, p. 045406, 2019	BibTeX DOI arXiv
Peter Schnauber, Johannes Schall, Samir Bounouar, Theresa Höhne, Suk-In Park, Geun-Hwan Ryu, Tobias Heindel, Sven Burger, Jin-Dong Song, Sven Rodt, Stephan Reitzenstein	Deterministic integration of quantum dots into on-chip multi-mode interference couplers via in-situ electron beam lithography	Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference (CLEO/EQEC), p. EB2.2, OSA Technical Digest, 2019	BibTeX DOI
Gauri Mangalgiri	Development of Titanium Dioxide Metasurfaces and Nanosoupbowls for Optically Enhancing Silicon Photocathodes	Doctoral thesis, Humboldt-Universität zu Berlin, Martina Schmid (Advisor), 2019	BibTeX DOI
Paweł Mrowinski, Peter Schnauber, Philipp Gutsche, Arsenty Kaganskiy, Johannes Schall, Sven Burger, Sven Rodt, Stephan Reitzenstein	Directional emission of a deterministically fabricated quantum dot – Bragg reflection multi-mode waveguide system	ACS Photonics, Vol.6, p. 2231, 2019	BibTeX DOI arXiv
Tobias Haase, Vikram Sunkara, Benjamin Kohl, Carola Meier, Patricia Bußmann, Jessica Becker, Michal Jagielski, Max von Kleist, Wolfgang Ertel	Discerning the spatio-temporal disease patterns of surgically induced OA mouse models	PLOS One, 14(4), 2019	BibTeX DOI
Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker	Dispersion-engineered nanocomposites enable achromatic diffractive optical elements	Optica, Vol.6, p. 1031, 2019	BibTeX DOI
Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad	EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma	PLOS ONE, 14(1), 2019	BibTeX DOI
Mark A. Girolami, Ilse C. F. Ipsen, Chris Oates, Art B. Owen, T. J. Sullivan	Editorial: Special edition on probabilistic numerics	Statistics and Computing, 29(6), pp. 1181-1183, 2019	BibTeX DOI
Nando Farchmin, Martin Hammerschmidt, Philipp-Immanuel Schneider, Matthias Wurm, Markus Bär, Sebastian Heidenreich	Efficient global sensitivity analysis for silicon line gratings using polynomial chaos	Proc. SPIE, Vol.11057, p. 110570J, 2019	BibTeX DOI
Sven Burger, Felix Binkowski, Lin Zschiedrich	Finite Element Simulations of Optical Resonances in Dispersive Nanoresonators	Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 699, 2019	BibTeX
Enric Ribera Borrell	From ergodic infinite-time to finite-time transition path theory	Master's thesis, Freie Universität Berlin, Péter Koltai, Christof Schütte (Advisors), 2019	BibTeX
Konstantin Fackeldey, Peter Koltai, Peter Nevir, Henning Rust, Axel Schild, Marcus Weber	From metastable to coherent sets - Time-discretization schemes	Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol.29, pp. 012101-012101, 2019 (preprint available as ZIB-Report 17-74)	PDF (ZIB-Report) BibTeX DOI
Péter Koltai, Han Cheng Lie, Martin Plonka	Fréchet differentiable drift dependence of Perron–Frobenius and Koopman operators for non-deterministic dynamics	Nonlinearity, 32(11), pp. 4232-4257, 2019	BibTeX DOI
Bernhard Reuter, Konstantin Fackeldey, Marcus Weber	Generalized Markov modeling of nonreversible molecular kinetics	The Journal of Chemical Physics, 17(150), p. 174103, 2019	BibTeX DOI
Anna Andrle, Philipp Hönicke, Philipp-Immanuel Schneider, Yves Kayser, Martin Hammerschmidt, Sven Burger, Frank Scholze, Burkhard Beckhoff, Victor Soltwisch	Grazing incidence x-ray fluorescence based characterization of nanostructures for element sensitive profile reconstruction	Proc. SPIE, Vol.11057, p. 110570M, 2019	BibTeX DOI arXiv
Margarita Kostré	Hybrid Models and Simulations of Reaction-Diffusion Processes	Master's thesis, Freie Universität Berlin, Frank Noe (Advisor), 2019	BibTeX
Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria Peschutter, Heike Siebert, Annalisa Marsico	Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis	BMC Bioinformatics, 20(1471-2105), 2019	BibTeX DOI
Klaus Jäger, Marko Jošt, Johannes Sutter, Philipp Tockhorn, Eike Köhnen, David Eisenhauer, Phillip Manley, Steve Albrecht, Christiane Becker	Improving Monolithic Perovskite/Silicon Tandem Solar Cells From an Optical Viewpoint	OSA Advanced Photonics Congress, p. PM4C.2, OSA Technical Digest, 2019	BibTeX DOI
Marie-Christin Weber, Lisa Fischer, Alexandra Damerau, Igor Ponomarev, Moritz Pfeiffenberger, Timo Gaber, Sebastian Götschel, Jens Lang, Susanna Röblitz, Frank Buttgereit, Rainald Ehrig, Annemarie Lang	In vitro and in silico modeling of cellular and matrix-related changes during the early phase of osteoarthritis	BioRxiv, 2019	BibTeX DOI
Felix Meitzner	Influence of Ordinary Differential Equations on Neural Networks	Bachelor's thesis, Freie Universität Berlin, Christof Schütte, Tim Conrad (Advisors), 2019	BibTeX
Carsten Hartmann, Christof Schütte, Wei Zhang	Jarzynski's equality, fluctuation theorems, and variance reduction: Mathematical analysis and numerical algorithms	Journal of Statistical Physics, 175(6), pp. 1214-1261, 2019	BibTeX arXiv DOI
Stefan Klus, Brooke E. Husic, Mattes Mollenhauer, Frank Noe	Kernel methods for detecting coherent structures in dynamical data	Chaos: An Interdisciplinary Journal of Nonlinear Science, 29(12), 2019	BibTeX DOI
Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte	Learning chemical reaction networks from trajectory data	SIAM Journal on Applied Dynamical Systems (SIADS), 18(4), pp. 2000-2046, 2019	BibTeX arXiv DOI
Lin Zschiedrich, Felix Binkowski, Sven Burger	Light-matter Interaction in Optical Resonators: Spectral Expansion by Riesz Projection	Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 1067, 2019	BibTeX
Günter Kewes, Felix Binkowski, Sven Burger, Lin Zschiedrich, Felix Stete, Wouter Koopman, Matias Bargheer, Oliver Benson	Line Broadening Mechanisms in Hybrid Plasmonic Systems for Strong Coupling	Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 704, 2019	BibTeX
Kinga Żołnacz, Anna Musiał, Nicole Srocka, Jan Große, Maximilian Schlösinger, Philipp-Immanuel Schneider, Oleh Kravets, Monika Mikulicz, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wójcik, Paweł Mergo, Kamil Dybka, Mariusz Dyrkacz, Michał Dłubek, Sven Rodt, Sven Burger, Lin Zschiedrich, Grzegorz Sęk, Stephan Reitzenstein, Wacław Urbańczyk	Method for direct coupling of a semiconductor quantum dot to an optical fiber for single-photon source applications	Opt. Express, Vol.27, p. 26772, 2019	BibTeX DOI
Felix Binkowski, Lin Zschiedrich, Martin Hammerschmidt, Sven Burger	Modal analysis for nanoplasmonics with nonlocal material properties	Phys. Rev. B, Vol.100, p. 155406, 2019	BibTeX DOI arXiv
Robert Schulz, Kenji Yamamoto, André Klossek, Fiorenza Rancan, Annika Vogt, Christof Schütte, Eckart Rühl, Roland R. Netz	Modeling of Drug Diffusion Based on Concentration Profiles in Healthy and Damaged Human Skin	Biophysical Journal, 117(5), pp. 998-1008, 2019	BibTeX DOI
Franziska Erlekam, Sinaida Igde, Susanna Röblitz, Laura Hartmann, Marcus Weber	Modeling of Multivalent Ligand-Receptor Binding Measured by kinITC	Computation, 7(3), p. 46, 2019	BibTeX DOI
Patrick Gelß, Stefan Klus, Jens Eisert, Christof Schütte	Multidimensional Approximation of Nonlinear Dynamical Systems	Journal of Computational and Nonlinear Dynamics, 14(6), 2019	BibTeX DOI
Narendra Lagumaddepalli Venkatareddy, Patrick Wilke, Natalia Ernst, Justus Horch, Marcus Weber, Andre Dallmann, Hans G. Börner	Mussel-glue inspired adhesives: A study on the relevance of L-Dopa and the function of the sequence at nanomaterial-peptide interfaces	Advanced Materials Interfaces, 6(13), p. 1900501, 2019	BibTeX DOI
Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker	Nanocomposites – A Route to better and smaller optical Elements?	Optical Design and Fabrication 2019, p. OT2A.2, OSA Technical Digest, 2019	BibTeX DOI
Christiane Becker, Sven Burger, Klaus Jäger	Nanooptische Simulationen für optoelektronische Anwendungen	Photonik: Fachzeitschrift für die optischen Technologien, 2019(2), pp. 42-45, 2019	BibTeX
Phillip Manley, Martin Hammerschmidt, Sven Burger, Christiane Becker	Nanophotonic Enhancement of Light Out-Coupling for Deep-UV LEDs	The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 745, 2019	BibTeX
Christiane Becker, Phillip Manley, Klaus Jäger, David Eisenhauer, Johannes Sutter, Steve Albrecht, Kaibo Zheng, Tonu Pullerits, Sven Burger	Nanophotonic enhanced perovskite-silicon solar cell devices	The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 858, 2019	BibTeX
Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger	Numerical Investigation of Integrated Single-Photon Emitters in Low-Index-Contrast Waveguides	Nanophotonics: Foundations & Applications, CSF Conference Book of Abstracts, Lukas Novotny, Romain Quidant (Eds.), p. B11, 2019	BibTeX
Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger	Numerical Investigation of Light Emission from Quantum Dots Embedded into On-Chip, Low Index Contrast Optical Waveguides	Phys. Status Solidi B, Vol.256, p. 1800437, 2019	BibTeX DOI arXiv
Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger	Numerical Studies of Integrated Single-Photon Emitters in Low-Index-Contrast Waveguides	7th International Workshop on Engineering of Quantum Emitter Properties (EQEP), Stephan Reitzenstein, Tobias Heindel (Eds.), p. 49, 2019	BibTeX
Sven Burger, Philipp-Immanuel Schneider, Theresa Höhne, Lin Zschiedrich	Numerical methods for simulation and optimization of the extraction efficiency from quantum-dot based single-photon emitters	7th International Workshop on Engineering of Quantum Emitter Properties (EQEP), Stephan Reitzenstein, Tobias Heindel (Eds.), p. 20, 2019	BibTeX
Felix Binkowski, Philipp-Immanuel Schneider, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Numerical optimization of resonant nanophotonic devices	The Seventh International School and Conference on Photonics (PHOTONICA Belgrade), Milica Matijević, Marko Krstić, Petra Beličev (Eds.), p. 10, 2019, ISBN: 978-86-7306-153-5	BibTeX
Martin Hammerschmidt, Lin Zschiedrich, Philipp-Immanuel Schneider, Felix Binkowski, Sven Burger	Numerical optimization of resonant photonic devices	Proc. SPIE, p. 1105702, Vol.11057, 2019	BibTeX DOI
Wilhelm Bender	On a Novel Approach for Global Optimization of Non-Convex Problems	Master's thesis, Technische Universität Berlin, Konstantin Fackeldey (Advisor), 2019	PDF BibTeX URN
Rainald Ehrig, Markus O. Heller	On intrinsic equivalences of the finite helical axis, the instantaneous helical axis, and the SARA approach. A mathematical perspective.	Journal of Biomechanics, Vol.84, pp. 4-10, 2019	BibTeX DOI
Vikram Sunkara	On the Properties of the Reaction Counts Chemical Master Equation	Entropy, 21(6), p. 607, 2019	BibTeX DOI
Marco Reidelbach	Optimal Network Generation for the Simulation of Proton Transfer Processes	Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019	BibTeX
Max Zumbansen	Parameter estimation of multivalent processes on ITC datasets	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019	BibTeX
Rascha Basaleh	Prediction and Analysis of Drugs Inducing Liver Injury (DILI) using ProTox-II Computational-Tool	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019	BibTeX
P. Lalanne, W. Yan, A. Gras, C. Sauvan, J.-P. Hugonin, M. Besbes, G. Demésy, M. D. Truong, B. Gralak, F. Zolla, A. Nicolet, Felix Binkowski, Lin Zschiedrich, Sven Burger, J. Zimmerling, R. Remis, H. Paul Urbach, H. T. Liu, T. Weiss	Quasinormal mode solvers for resonators with dispersive materials	J. Opt. Soc. Am. A, Vol.36, p. 686, 2019	BibTeX DOI arXiv
Luca Donati	Reweighting methods for Molecular Dynamics	Doctoral thesis, Freie Universität Berlin, Bettina G Keller, Marcus Weber (Advisors), 2019	BibTeX DOI URN
Anika Rettig, Tobias Haase, Alexandr Pletnyov, Benjamin Kohl, Wolfgang Ertel, Max von Kleist, Vikram Sunkara	SLCV – A Supervised Learning - Computer Vision combined strategy for automated muscle fibre detection in cross sectional images	PeerJ, 2019	PDF BibTeX URN DOI
Mehmet Neset Ozel, Abhishek Kulkarni, Amr Hasan, Josephine Brummer, Marian Moldenhauer, Ilsa-Maria Daumann, Heike Wolfenberg, Vincent J. Dercksen, Ferdi Ridvan Kiral, Martin Weiser, Steffen Prohaska, Max von Kleist, Peter Robin Hiesinger	Serial synapse formation through filopodial competition for synaptic seeding factors	Developmental Cell, 50(4), pp. 447-461, 2019 (preprint available as ZIB-Report 19-45)	PDF (ZIB-Report) BibTeX DOI
Felix Binkowski, Lin Zschiedrich, Philipp-Immanuel Schneider, Martin Hammerschmidt, Xavier Garcia Santiago, Fridtjof Betz, Sven Burger	Spectral Expansion of the Scattering Response of Resonant Nanostructures	EOS Topical Meeting on Diffractive Optics, Kimmo Saastamoinen (Ed.), p. 1, 2019, ISBN: 978-952-68553-8-7	BibTeX
Lin Zschiedrich, Felix Binkowski, Sven Burger	Spectral resonance expansion by Riesz projections	14 th International Conference on Mathematical and Numerical Aspects of Wave Propagation Book of Abstracts, Manfred Kaltenbacher (Ed.), p. 234, 2019	BibTeX DOI
Han Cheng Lie, T. J. Sullivan, Andrew Stuart	Strong convergence rates of probabilistic integrators for ordinary differential equations	Statistics and Computing, 29(6), pp. 1265-1283, 2019	BibTeX arXiv DOI
José Villatoro, Marcus Weber, Martin Zühlke, Andreas Lehmann, Karl Zechiowski, Daniel Riebe, Toralf Beitz, Hans-Gerd Löhmannsröben, Oliver Kreuzer	Structural characterization of synthetic peptides using electronspray ion mobility spectrometry and molecular dynamics simulations	International Journal of Mass Spectrometry, Vol.436, pp. 108-117, 2019	BibTeX DOI
Marcus Weber	Transformationsprodukte im Klärwerk: Mathematische Ansätze der Bewertung	KA Korrespondenz Abwasser, Abfall, Vol.7, pp. 551-557, 2019	BibTeX
	Uncertainty Quantification, 11-15 March 2019	Oberwolfach Reports, 16(1), pp. 695-772, Oliver Ernst, Fabio Nobile, Claudia Schillings, T. J. Sullivan (Eds.), 2019	BibTeX DOI
Philipp-Immanuel Schneider, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Using Gaussian process regression for efficient parameter reconstruction	Proc. SPIE, Vol.10959, p. 1095911, 2019	BibTeX DOI arXiv
Aennes Abbas, Ilona Schneider, Anna Bollmann, Jan Funke, Jörg Oehlmann, Carsten Prasse, Ulrike Schulte-Oehlmann, Wolfram Seitz, Thomas Ternes, Marcus Weber, Henning Wesely, Martin Wagner	What you extract is what you see: Optimising the preparation of water and wastewater samples for in vitro bioassays	Water Research, Vol.152, pp. 47-60, 2019	BibTeX DOI
Giovanna Del Vecchio, Dominika Labuz, Julia Temp, Viola Seitz, Michael Kloner, Roger Negrete, Antonio Rodriguez-Gaztelumendi, Marcus Weber, Halina Machelska, Christoph Stein	pKa of opioid ligands as a discriminating factor for side effects	Scientific Reports, Vol.9, p. 19344, 2019	BibTeX DOI
2018
José Villatoro	A combined approach for the analysis of biomolecules using IR-MALDI ion mobility spectrometry and molecular dynamics simulations of peptide ions in the gas phase	Doctoral thesis, Universität Potsdam, Hans-Gerd Löhmannsröben (Advisor), 2018	BibTeX
Stefan Klus, Andreas Bittracher, Ingmar Schuster, Christof Schütte	A kernel-based approach to molecular conformation analysis	Journal of Chemical Physics, 149(24), 2018	BibTeX DOI
Julia Plöntzke, Mascha Berg, Susanna Röblitz	A mathematical modelling approach to the insight of dynamic networks: Potassium homeostasis and glucose-insulin in dairy cows	ADSA 2018 Annual Meeting, Vol.101 Suppl. 2, pp. 226-227, American Dairy Science Association, Journal of Dairy Science, 2018	BibTeX
Péter Koltai, Christof Schütte	A multiscale perturbation expansion approach for Markov state modeling of non-stationary molecular dynamics	SIAM J. Multiscale Model. Simul., 16(4), pp. 1455-1485, 2018 (preprint available as ZIB-Report 17-49)	PDF (ZIB-Report) BibTeX DOI
Phillip Manley, Fatwa F. Abdi, Sean P. Berglund, A. T. M. Nazmul Islam, Sven Burger, Roel van de Krol, Martina Schmid	Absorption Enhancement for Ultra-Thin Solar Fuel Devices with Plasmonic Gratings	ACS Appl. Energy Mater., Vol.1, p. 5810, 2018	BibTeX DOI arXiv
Katharina Schrade, Jessica Tröger, Adeep Eldashan, Kerstin Zühlke, Kamal R. Abdul Azees, Jonathan M. Elkins, Martin Neuenschwander, Andreas Oder, Mohamed Elkewedi, Sarah Jaksch, Karsten Andrae, Jinliang Li, Jaoa Fernandes, Paul Markus Müller, Stephan Grunwald, Stephen F. Marino, Tanja Vukicevic, Jenny Eichhorst, Burkhard Wiesner, Marcus Weber, Michael Kapiloff, Oliver Rocks, Oliver Daumke, Thomas Wieland, Stefan Knapp, Jens Peter von Kries, Enno Klussmann	An AKAP-Lbc-RhoA interaction inhibitor promotes the translocation of aquaporin-2 to the plasma membrane of renal collecting duct principal cells	PLOS ONE, 13(1), pp. e0191423-e0191423, 2018	BibTeX DOI
Jannes Quer, Luca Donati, Bettina Keller, Marcus Weber	An automatic adaptive importance sampling algorithm for molecular dynamics in reaction coordinates	SIAM Journal on Scientific Computing, 40(2), pp. A653-A670, 2018 (preprint available as ZIB-Report 17-09)	PDF (ZIB-Report) BibTeX DOI
Felix Binkowski, Lin Zschiedrich, Sven Burger	Analysis of light-matter interaction of optical sources with dispersive nanoresonators via contour integration	XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 40, 2018, ISBN: 978-3-921823-98-9	BibTeX
Carlo Barth	Analysis of photonic crystals for interaction with near-surface emitters	Doctoral thesis, Technische Universität Berlin, Bernd Rech, Christiane Becker (Advisors), 2018	BibTeX DOI
Klaus Jäger, Phillip Manley, Duote Chen, Philipp Tockhorn, David Eisenhauer, Grit Köppel, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker	Antireflective nanotextures for monolithic perovskite-silicon tandem solar cells	Proc. SPIE, Vol.10688, p. 106880A, 2018	BibTeX DOI arXiv
Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivanskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mork, Niels Gregersen	Benchmarking five numerical simulation techniques for computing resonance wavelengths and quality factors in photonic crystal membrane line defect cavities	Opt. Express, Vol.26, p. 11366, 2018	BibTeX DOI arXiv
Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko	Benchmarking state-of-the-art numerical simulation techniques for analyzing large photonic crystal membrane line defect cavities	Proc. SPIE, Vol.10672, p. 106721C, 2018	BibTeX DOI
Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Oleksiy S. Kim, Olav Breinbjerg, Fengwen Wang, Ole Sigmund, Aliaksandra Ivinskaya, Andrei Lavrinenko, Philipp Gutsche, Sven Burger, Teppo Häyrynen, Jesper Mørk	Benchmarking state-of-the-art optical simulation methods for analyzing large nanophotonic structures	XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 9, 2018, ISBN: 978-3-921823-98-9	BibTeX
Philipp Gutsche, Philipp-Immanuel Schneider, Sven Burger, Manuel Nieto-Vesperinas	Chiral scatterers designed by Bayesian optimization	J. Phys.: Conf. Ser., Vol.963, p. 012004, 2018	BibTeX DOI arXiv
Toni Mancini, Federico Mari, Annalisa Massini, Igor Melatti, Ivano Salvo, Stefano Sinisi, Enrico Tronci, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners	Computing Personalised Treatments through In Silico Clinical Trials. A Case Study on Downregulation in Assisted Reproduction	Experimental Evaluation of Algorithms for Solving Problems with Combinatorial Explosion, Workshop of the Federated Logic Conference 2018 (FLoC 2018), Oxford, pp. 1-16, 2018	BibTeX DOI
Robert Schwieger, Heike Siebert, Susanna Röblitz	Correspondence of Trap Spaces in Different Models of Bioregulatory Networks	SIAM Journal on Applied Dynamical Systems, 17(2), pp. 1742-1765, 2018 (preprint available as ZIB-Report 18-10)	PDF (ZIB-Report) BibTeX DOI
Stefan Klus, Feliks Nüske, Peter Koltai, Hao Wu, Ioannis Kevrekidis, Christof Schütte, Frank Noé	Data-driven model reduction and transfer operator approximation	Journal of Nonlinear Science, 28(3), pp. 985-1010, 2018	BibTeX DOI
Daniel Werdehausen, Isabelle Staude, Sven Burger, Jörg Petschulat, Toralf Scharf, Thomas Pertsch, Manuel Decker	Design rules for customizable optical materials based on nanocomposites	Opt. Mater. Express, Vol.8, p. 3456, 2018	BibTeX DOI arXiv
Peter Schnauber, Johannes Schall, Samir Bounouar, Theresa Höhne, Suk-In Park, Geun-Hwan Ryu, Tobias Heindel, Sven Burger, Jin-Dong Song, Sven Rodt, Stephan Reitzenstein	Deterministic integration of quantum dots into on-chip multi-mode interference beamsplitters using in-situ electron beam lithography	Nano Lett., Vol.18, p. 2336, 2018	BibTeX DOI arXiv
Arne Nägel, Peter Deuflhard, Gabriel Wittum	Efficient Stiff Integration of Density Driven Flow Problems	ZIB-Report 18-54	PDF BibTeX URN
Phillip Manley, Min Song, Sven Burger, Martina Schmid	Efficient determination of bespoke optically active nanoparticle distributions	J. Opt., Vol.20, p. 085003, 2018	BibTeX DOI arXiv
Martin Hammerschmidt, Jakub Pabisiak, Ana Cristina Perez-Gea, Nicolas Julian, Sean Hon, Sven Burger	Efficient finite-element-based numerical modelling of large sub-wavelength patterned optical structures	Proc. SPIE, Vol.10542, p. 105421G, 2018	BibTeX DOI
Nicole Srocka, Anna Musiał, Philipp-Immanuel Schneider, Paweł Mrowiński, Paweł Holewa, Sven Burger, David Quandt, André Strittmatter, Sven Rodt, Stephan Reitzenstein, Grzegorz Sęk	Enhanced photon-extraction efficiency from InGaAs/GaAs quantum dots in deterministic photonic structures at 1.3 μm fabricated by in-situ electron-beam lithography	AIP Adv., Vol.8, p. 085205, 2018	BibTeX DOI arXiv
Han Cheng Lie, T. J. Sullivan	Equivalence of weak and strong modes of measures on topological vector spaces	Inverse Problems, 34(11), p. 115013, 2018	BibTeX arXiv DOI
Han Cheng Lie, T. J. Sullivan	Erratum: Equivalence of weak and strong modes of measures on topological vector spaces (2018 Inverse Problems 34 115013)	Inverse Problems, 34(12), p. 129601, 2018	BibTeX DOI
Luca Donati, Martin Heida, Bettina G. Keller, Marcus Weber	Estimation of the infinitesimal generator by square-root approximation	J. Phys.: Condens. Matter, 30(42), pp. 425201-425201, 2018	BibTeX DOI
Merlind Schotte	Finite-Elemente-Techniken zur mechanischen Stabilitätsanalyse der Hyomandibula von Rochen	Master's thesis, Beuth Hochschule für Technik Berlin, Daniel Baum, Ute Wagner (Advisors), 2018	BibTeX
Alexander Lange, Robert Schwieger, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz	Follicular competition in cows: the selection of dominant follicles as a synergistic effect	Journal of Mathematical Biology, 2018 (preprint available as ZIB-Report 17-21)	PDF (ZIB-Report) BibTeX DOI
Bernhard Reuter	Generalisierte Markov-Modellierung von Nichtgleichgewichtssystemen - Simulation und Modellierung der Amyloid-beta(1-40)-Konformationsdynamik unter Mikrowelleneinfluss	Doctoral thesis, Universität Kassel, Martin Garcia (Advisor), 2018	BibTeX
Bernhard Reuter, Marcus Weber, Konstantin Fackeldey, Susanna Röblitz, Martin E. Garcia	Generalized Markov State Modeling Method for Nonequilibrium Biomolecular Dynamics: Exemplified on Amyloid β Conformational Dynamics Driven by an Oscillating Electric Field	Journal of Chemical Theory and Computation, 14(7), pp. 3579-3594, 2018	BibTeX DOI
Günter Kewes, Felix Binkowski, Sven Burger, Lin Zschiedrich, Oliver Benson	Heuristic Modeling of Strong Coupling in Plasmonic Resonators	ACS Photonics, Vol.5, p. 4089, 2018	BibTeX DOI arXiv
Natasa Djurdjevac Conrad, Luzie Helfmann, Johannes Zonker, Stefanie Winkelmann, Christof Schütte	Human mobility and innovation spreading in ancient times: a stochastic agent-based simulation approach	EPJ Data Science, 7(1), 2018	BibTeX DOI
Marcus Weber	Implications of PCCA+ in Molecular Simulation	Computation, 6(1), p. 20, 2018	BibTeX DOI
Onur Teymur, Han Cheng Lie, T. J. Sullivan, Ben Calderhead	Implicit probabilistic integrators for ODEs	Advances in Neural Information Processing Systems 31 (NIPS 2018), 2018	BibTeX arXiv
Jannes Quer	Importance Sampling for metastable dynamical systems in molecular dynamics	Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2018	BibTeX
Annemarie Lang, Andrea Volkamer, Laura Behm, Susanna Röblitz, Rainald Ehrig, Marlon Schneider, Lisbet Geris, Joerg Wichard, Frank Buttgereit	In silico Methods - Computational Alternatives to Animal Testing	ALTEX, 35(1), pp. 126-128, 2018	BibTeX DOI
Philipp-Immanuel Schneider, Xavier Garcia Santiago, Felix Binkowski, Philipp Gutsche, Theresa Höhne, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger	Light Management for Engineering Luminescence in Nanoscale Environments By Numerical Optimization	The Electrochemical Society, Meeting Abstracts, p. 1164, Vol.16, 2018	BibTeX DOI
Klaus Jäger, Phillip Manley, David Eisenhauer, Philipp Tockhorn, Johannes Sutter, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker	Light management with sinusoidal nanotextures	Light, Energy and the Environment 2018, p. OT5C.5, OSA Technical Digest, 2018	BibTeX DOI
Lisa Fischer, Sebastian Götschel, Martin Weiser	Lossy data compression reduces communication time in hybrid time-parallel integrators	Comput. Vis. Sci., 19(1), pp. 19-30, 2018 (preprint available as ZIB-Report 17-25)	PDF (ZIB-Report) BibTeX DOI
Manuel Dibak, Mauricio J. del Razo, David de Sancho, Christof Schütte, Frank Noé	MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations	Journal of Chemical Physics, 148(21), 2018	BibTeX DOI
Manuel Dibak, Mauricio J. del Razo, David De Sancho, Christof Schütte, Frank Noé	MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations	Journal of Chemical Physics, 148(214107), 2018	BibTeX DOI
Carlo Barth, Christiane Becker	Machine learning classification for field distributions of photonic modes	Commun. Phys., Vol.1, p. 58, 2018	BibTeX DOI arXiv
Natasa Djurdjevac Conrad, Daniel Fuerstenau, Ana Grabundzija, Luzie Helfmann, Martin Park, Wolfram Schier, Brigitta Schütt, Christof Schütte, Marcus Weber, Niklas Wulkow, Johannes Zonker	Mathematical modeling of the spreading of innovations in the ancient world	eTopoi. Journal for Ancient Studies, Vol.7, 2018	PDF BibTeX DOI
Jakob Witzig, Isabel Beckenbach, Leon Eifler, Konstantin Fackeldey, Ambros Gleixner, Andreas Grever, Marcus Weber	Mixed-Integer Programming for Cycle Detection in Non-reversible Markov Processes	Multiscale Modeling and Simulation, 16(1), pp. 248-265, 2018 (preprint available as ZIB-Report 16-39)	PDF (ZIB-Report) BibTeX DOI
Natascia Castagna, Jacques Morel, Luc Testa, Sven Burger	Modelling of standard and specialty fibre-based systems using finite element methods	Proc. SPIE, Vol.10683, p. 1068336, 2018	BibTeX DOI arXiv
Paula Breitbach	Molecular Binding Kinetics of CYP P450 by Using the Infinitesimal Generator Approach	Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2018	PDF BibTeX URN
Giovanni Ciccotti, Mauro Ferrario, Christof Schütte	Molecular Dynamics vs. Stochastic Processes: Are We Heading Anywhere?	Special Issue: Understanding Molecular Dynamics via Stochastic Processes, Entropy, 20(5), 2018	PDF BibTeX DOI
Duote Chen, Phillip Manley, Philipp Tockhorn, David Eisenhauer, Grit Köppel, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker, Klaus Jäger	Nanophotonic Light Management for Perovskite-Silicon Tandem Solar Cells	J. Photonics Energy, Vol.8, p. 022601, 2018	BibTeX DOI arXiv
Christiane Becker, Sven Burger, Carlo Barth, Phillip Manley, Klaus Jäger, David Eisenhauer, Grit Köppel, Pavel Chabera, Junsheng Chen, Kaibo Zheng, Tönu Pullerits	Nanophotonic enhanced two-photon excited photoluminescence of perovskite quantum dots	ACS Photonics, Vol.5, p. 4668, 2018	BibTeX DOI arXiv
Martina Klimm	New Strategies in Conformation Dynamics	Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2018	BibTeX
Nicholas J. Tierney, Antonietta Mira, J. Jost Reinhold, Martin Weiser, Roman Burkart, Claudio Benvenuti, Angelo Auricchio	Novel relocation methods for automatic external defibrillator improve out-of-hospital cardiac arrest coverage under limited resources	Resuscitation, pp. 83-89, 2018	BibTeX DOI
Philipp-Immanuel Schneider, Nicole Srocka, Sven Rodt, Lin Zschiedrich, Stephan Reitzenstein, Sven Burger	Numerical optimization of the extraction efficiency of a quantum-dot based single-photon emitter into a single-mode fiber	Opt. Express, Vol.26, p. 8479, 2018	BibTeX DOI arXiv
Johannes von Lindheim	On Intrinsic Dimension Estimation and Minimal Diffusion Maps Embeddings of Point Clouds	Master's thesis, Freie Universität Berlin, Ralf Banisch (Advisor), 2018	BibTeX
Klaus Jäger, Grit Köppel, Martin Hammerschmidt, Sven Burger, Christiane Becker	On accurate simulations of thin-film solar cells with a thick glass superstrate	Opt. Express, Vol.26, p. A99, 2018	BibTeX DOI
Maksim Shpak, Sven Burger, Ville Byman, Kimmo Saastamoinen, Mertsi Haapalainen, Antti Lassila	Online measurement of optical fibre geometry during manufacturing	Proc. SPIE, Vol.10683, p. 1068318, 2018	BibTeX DOI arXiv
Viola Spahn, Giovanna Del Vecchio, Antonio Rodriguez-Gaztelumendi, Julia Temp, Dominika Labuz, Michael Kloner, Marco Reidelbach, Halina Machelska, Marcus Weber, Christoph Stein	Opioid receptor signaling, analgesic and side effects induced by a computationally designed pH-dependent agonist	Scientific Reports, Vol.8, p. 8965, 2018	BibTeX
Philipp Gutsche, Manuel Nieto-Vesperinas	Optical Chirality of Time-Harmonic Wavefields for Classification of Scatterers	Sci. Rep., Vol.8, p. 9416, 2018	BibTeX DOI arXiv
Martin Weiser, Yvonne Freytag, Bodo Erdmann, Michael Hubig, Gita Mall	Optimal Design of Experiments for Estimating the Time of Death in Forensic Medicine	Inverse Problems, 34(12), p. 125005, 2018 (preprint available as ZIB-Report 18-08)	PDF (ZIB-Report) BibTeX DOI
Peter Koltai, Hao Wu, Frank Noé, Christof Schütte	Optimal data-driven estimation of generalized Markov state models for non-equilibrium dynamics	Computation, 6(1), 2018	PDF BibTeX DOI
Phillip Manley, Klaus Jäger, Philipp Tockhorn, Sven Burger, Steve Albrecht, Christiane Becker	Optimization of nanostructured high efficiency perovskite/c-Si tandem solar cells via numerical simulation	Proc. SPIE, p. 107310B, Vol.10731, 2018	BibTeX DOI
Philipp-Immanuel Schneider, Lin Zschiedrich, Xavier Garcia Santiago, Sven Burger	Optimization of quantum optical devices with machine learning	XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 6, 2018, ISBN: 978-3-921823-98-9	BibTeX
Sebastian Götschel, Michael L. Minion	Parallel-in-Time for Parabolic Optimal Control Problems Using PFASST	Domain Decomposition Methods in Science and Engineering XXIV, pp. 363-371, Springer: Cham, 2018 (preprint available as ZIB-Report 17-51)	PDF (ZIB-Report) BibTeX DOI
Franz Löchner, Anna Fedotova, Sheng Liu, Gordon Keeler, Gregory Peake, Sina Saravi, Maxim Shcherbakov, Sven Burger, Andrey Fedyanin, Igal Brener, Thomas Pertsch, Frank Setzpfandt, Isabelle Staude	Polarization-Dependent Second Harmonic Diffraction from Resonant GaAs Metasurfaces	ACS Photonics, Vol.5, p. 1786, 2018	BibTeX DOI
Marco Reidelbach, Marcus Weber, Petra Imhof	Prediction of perturbed proton transfer networks	PLoS ONE, 13(12), pp. e0207718-e0207718, 2018	BibTeX DOI
Han Cheng Lie, T. J. Sullivan	Quasi-invariance of countable products of Cauchy measures under non-unitary dilations	Electronic Communications in Probability, 23(8), pp. 1-6, 2018	BibTeX arXiv DOI
Han Cheng Lie, T. J. Sullivan, Aretha Teckentrup	Random forward models and log-likelihoods in Bayesian inverse problems	ZIB-Report 18-03	PDF BibTeX URN arXiv DOI
Lin Zschiedrich, Felix Binkowski, Niko Nikolay, Oliver Benson, Günter Kewes, Sven Burger	Riesz-projection-based theory of light-matter interaction in dispersive nanoresonators	Phys. Rev. A, Vol.98, p. 043806, 2018	BibTeX DOI arXiv
Muluneh G. Abebe, Aimi Abass, Guillaume Gomard, Lin Zschiedrich, Uli Lemmer, Bryce S. Richards, Carsten Rockstuhl, Ulrich W. Paetzold	Rigorous wave-optical treatment of photon recycling in thermodynamics of photovoltaics: Perovskite thin-film solar cells	Phys. Rev. B, Vol.98, p. 075141, 2018	BibTeX DOI arXiv
Sabine Wagner, Carlos Zapata, Wei Wan, Kornelia Gawlitza, Marcus Weber, Knut Rurack	Role of Counterions in Molecularly Imprinted Polymers for Anionic Species	Langmuir, 34(23), pp. 6963-6975, 2018	BibTeX DOI
Xavier Garcia Santiago, Philipp-Immanuel Schneider, Carsten Rockstuhl, Sven Burger	Shape design of a reflecting surface using Bayesian Optimization	J. Phys.: Conf. Ser., Vol.963, p. 012003, 2018	BibTeX DOI
Martin Hammerschmidt, Philipp-Immanuel Schneider, Xavier Garcia Santiago, Lin Zschiedrich, Martin Weiser, Sven Burger	Solving inverse problems appearing in design and metrology of diffractive optical elements by using Bayesian optimization	Proc. SPIE, Vol.10694, p. 1069407, 2018	BibTeX DOI
Konstantin Fackeldey, Alexander Sikorski, Marcus Weber	Spectral Clustering for Non-Reversible Markov Chains	Computational and Applied Mathematics, 37(5), pp. 6376-6391, 2018 (preprint available as ZIB-Report 18-48)	PDF (ZIB-Report) BibTeX DOI
Max von Kleist, Christof Schütte, Wei Zhang	Statistical analysis of the first passage path ensemble of jump processes	Journal of Statistical Physics, Vol.170, pp. 809-843, 2018	BibTeX DOI
Luzie Helfmann	Stochastic Modeling of Interacting Agent Systems	Master's thesis, Freie Universität Berlin, Christof Schütte, Natasa Djurdjevac Conrad (Advisors), 2018	PDF BibTeX URN
Marcus Weber	Supplementary: Implications of PCCA+ in Molecular Simulation	2018	BibTeX
Stefan Klus, Patrick Gelß, Sebastian Peitz, Christof Schütte	Tensor-based dynamic mode decomposition	Nonlinearity, 31(7), 2018	BibTeX DOI
Peter Deuflhard	The Grand Four. Affine Invariant Globalizations of Newton's Method	Vietnam Journal of Mathematics, 46(4), pp. 761-777, 2018	BibTeX DOI
Martin Weiser, Sunayana Ghosh	Theoretically optimal inexact SDC methods	Communications in Applied Mathematics and Computational Science, pp. 53-86, 2018 (preprint available as ZIB-Report 16-52)	PDF (ZIB-Report) BibTeX DOI
Philipp Lorenz-Spreen, Frederik Wolf, Jonas Braun, Gourab Ghoshal, Natasa Djurdjevac Conrad, Philipp Hövel	Tracking online topics over time: understanding dynamic hashtag communities	Computational Social Networks, 5(9), 2018 (accepted for publication on 2018-09-28)	BibTeX DOI
Marcus Weber	Transformationsprodukte im Klärwerk: Mathematische Ansätze der Bewertung	KA Korrespondenz Abwasser, Abfall, 2018 (accepted for publication)	BibTeX
Andreas Bittracher, Péter Koltai, Stefan Klus, Ralf Banisch, Michael Dellnitz, Christof Schütte	Transition manifolds of complex metastable systems: Theory and data-driven computation of effective dynamics	Jounal of Nonlinear Science, 28(2), pp. 471-512, 2018 (preprint available as ZIB-Report 17-22)	PDF (ZIB-Report) BibTeX DOI
Martin Weiser, Bodo Erdmann, Sebastian Schenkl, Holger Muggenthaler, Michael Hubig, Gita Mall, Stefan Zachow	Uncertainty in Temperature-Based Determination of Time of Death	Heat and Mass Transfer, 54(9), pp. 2815-2826, 2018 (preprint available as ZIB-Report 17-18)	PDF (ZIB-Report) BibTeX DOI
Daniel Werdehausen, Isabelle Staude, Sven Burger, Jörg Petschulat, Toralf Scharf, Thomas Pertsch, Manuel Decker	Using effective medium theories to design tailored nanocomposite materials for optical systems	Proc. SPIE, p. 107450H, Vol.10745, 2018	BibTeX DOI arXiv
Theresa Höhne, Lin Zschiedrich, Nasibeh Haghighi, James A. Lott, Sven Burger	Validation of quasi-normal modes and of constant-flux modes for computing fundamental resonances of VCSELs	Proc. SPIE, Vol.10682, p. 106821U, 2018	BibTeX DOI
Radu Malureanu, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mørk, Niels Gregersen	Which Computational Methods Are Good for Analyzing Large Photonic Crystal Membrane Cavities?	20th International Conference on Transparent Optical Networks (ICTON), 2018	BibTeX DOI
2017
Mascha Berg, Julia Plöntzke, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz	A dynamic model to simulate potassium balance in dairy cows	Journal of Dairy Science, 100(12), pp. 9799-9814, 2017 (preprint available as ZIB-Report 17-47)	PDF (ZIB-Report) BibTeX DOI
Alexander Lange	A mathematical framework for predicting lifestyles of viral pathogens	Modelling Biological Evolution 2017: Developing Novel Approaches, 2017	BibTeX
Viola Spahn, Giovanna Del Vecchio, Dominika Labuz, Antonio Rodriguez-Gaztelumendi, N. Massaly, Julia Temp, Vedat Durmaz, P. Sabri, Marco Reidelbach, Halina Machelska, Marcus Weber, Christoph Stein	A nontoxic pain killer designed by modeling of pathological receptor conformations	Science, 355(6328), pp. 966-969, 2017	BibTeX DOI
Klaus Jäger, Grit Köppel, Martin Hammerschmidt, Sven Burger, Christiane Becker	Accurate optical simulations of periodic nanostructures on a thick glass substrate	29th Workshop on Quantum Solar Energy Conversion - (QUANTSOL), 2017	PDF BibTeX
Marian Moldenhauer, Martin Weiser, Stefan Zachow	Adaptive Algorithms for Optimal Hip Implant Positioning	PAMM, 17(1), pp. 203-204, 2017	BibTeX DOI
Alexander Sikorski	An Information-Theoretic Empirical Bayes Method and its Application to a Systems Biology Model	Master's thesis, Freie Universität Berlin, Susanna Röblitz (Advisor), 2017	PDF BibTeX URN
Lars Lubkoll, Anton Schiela, Martin Weiser	An affine covariant composite step method for optimization with PDEs as equality constraints	Optimization Methods and Software, 32(5), pp. 1132-1161, 2017 (preprint available as ZIB-Report 15-09)	PDF (ZIB-Report) BibTeX DOI
Sebastian Schenkl, Holger Muggenthaler, Michael Hubig, Bodo Erdmann, Martin Weiser, Stefan Zachow, Andreas Heinrich, Felix Victor Güttler, Ulf Teichgräber, Gita Mall	Automatic CT-based finite element model generation for temperature-based death time estimation: feasibility study and sensitivity analysis	International Journal of Legal Medicine, 131(3), pp. 699-712, 2017	BibTeX DOI
Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Teppo Häyrynen, Andrei Lavrinenko, Jesper Moerk, Fengwen Wang, Ole Sigmund, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Philipp Gutsche, Sven Burger	Benchmarking five computational methods for analyzing large photonic crystal membrane cavities	Numerical Simulation of Optoelectronic Devices (NUSOD), p. 89, IEEE, 2017	BibTeX DOI
Philipp Lorenz, Frederik Wolf, Jonas Braun, Natasa Djurdjevac Conrad, Philipp Hövel	Capturing the Dynamics of Hashtag-Communities	International Workshop on Complex Networks and their Applications, pp. 401-413, 2017	BibTeX DOI
Philipp Gutsche, Manuel Nieto-Vesperinas, Raquel Mäusle, Sven Burger	Chiral Nanophotonics: Theory and Simulation	Doctoral Summer School on Nanophotonics and Metamaterials, ITMO University, 2017	BibTeX
Andrey Novitsky, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mørk, Niels Gregersen	Comparison of five computational methods for computing Q factors in photonic crystal membrane cavities	19th International Conference on Transparent Optical Networks (ICTON), 2017	BibTeX DOI
Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Oleksiy S. Kim, Olav Breinbjerg, Fengwen Wang, Ole Sigmund, Aliaksandra Ivinskaya, Andrei Lavrinenko, Philipp Gutsche, Sven Burger, Teppo Häyrynen, Jesper Merk	Comparison of five numerical methods for computing quality factors and resonance wavelengths in photonic crystal membrane cavities	CLEO/Europe-EQEC, 2017	BibTeX DOI
Susanne Röhl	Computing the minimal rebinding effect for nonreversible processes	Master's thesis, Freie Universität Berlin, Marcus Weber, Konstantin Fackeldey (Advisors), 2017	PDF BibTeX URN
Andreas Bittracher, Ralf Banisch, Christof Schütte	Data-driven Computation of Molecular Reaction Coordinates	ZIB-Report 17-77	PDF BibTeX URN
Jan Müller, Sebastian Götschel, Christiane Maierhofer, Martin Weiser	Determining the material parameters for the reconstruction of defects in carbon fiber reinforced polymers from data measured by flash thermography	AIP Conference Proceedings, Vol.1806, 2017	BibTeX DOI
Stefan Klus, Ingmar Schuster, Krikamol Muandet	Eigendecompositions of Transfer Operators in Reproducing Kernel Hilbert Spaces	Journal of Machine Learning Research, 2017 (under review)	BibTeX arXiv
Marcus Weber	Eigenvalues of non-reversible Markov chains – A case study	ZIB-Report 17-13	PDF BibTeX URN
Ingmar Schuster, Paul Constantine, T. J. Sullivan	Exact active subspace Metropolis–Hastings, with applications to the Lorenz-96 system	2017	BibTeX arXiv
Konstantin Fackeldey, Amir Niknejad, Marcus Weber	Finding Metastabilities in Reversible Markov Chains based on Incomplete Sampling: Case of Molecular Simulation	Special Matrices, pp. 73-81, 2017	BibTeX DOI
Philipp Gutsche, Sven Burger, Manuel Nieto-Vesperinas	Fundamentals and Applications of an Optical Theorem for Chiral Optical Fields	4th International Conference on Optical Angular Momentum, 2017	BibTeX
Konstantin Fackeldey, Marcus Weber	GenPCCA -- Markov State Models for Non-Equilibrium Steady States	Big data clustering: Data preprocessing, variable selection, and dimension reduction. WIAS Report No. 29, pp. 70-80, 2017	BibTeX DOI
Philipp-Immanuel Schneider, Xavier Garcia Santiago, Carsten Rockstuhl, Sven Burger	Global optimization of complex optical structures using Bayesian optimization based on Gaussian processes	Proc. SPIE, Vol.10335, p. 103350O, 2017	BibTeX DOI arXiv
Gauri Mangalgiri, Makars Šiškins, Alina Arslanova, Martin Hammerschmidt, Phillip Manley, Wiebke Riedel, Martina Schmid	Highly Transmittive Broadband Dielectric Nanoholes	CLEO, p. JTu5A.117, OSA Tech. Dig., 2017	BibTeX DOI
Stefanie Winkelmann, Christof Schütte	Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems	The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ZIB-Report 17-29)	PDF PDF (ZIB-Report) BibTeX DOI
Carsten Hartmann, Christof Schütte, Marcus Weber, Wei Zhang	Importance sampling in path space for diffusion processes with slow-fast variables	Probability Theory and Related Fields, pp. 1-52, 2017	BibTeX DOI
Pooja Gupta, Annika Gramatke, Ralf Einspanier, Christof Schütte, Max von Kleist, Jutta Sharbati	In silico cytotoxicity assessment on cultured rat intestinal cells deduced from cellular impedance measurements	Toxicology in Vitro, Vol.41, pp. 179-188, 2017 (preprint available as ZIB-Report 17-08)	PDF (ZIB-Report) BibTeX
Carlo Barth, Sebastian Roder, Daniel Brodoceanu, Tobias Kraus, Martin Hammerschmidt, Sven Burger, Christiane Becker	Increased fluorescence of PbS quantum dots in photonic crystals by excitation enhancement	Appl. Phys. Lett., Vol.111, p. 031111, 2017	BibTeX DOI arXiv
Ingmar Schuster, Heiko Strathmann, Brooks Paige, Dino Sejdinovic	Kernel Sequential Monte Carlo	Joint European Conference on Machine Learning and Knowledge Discovery in Databases, pp. 390-409, 2017	BibTeX DOI
Brigitte Leeners, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Lanja Saleh, K. Spanhaus, Cordula Schippert, Y. Zhang, M. P. Hengartner	Lack of association between female hormone levels and visuospatial working memory, divided attention and cognitive bias across two consecutive menstrual cycles	Front. Behav. Neurosci., 2017	BibTeX DOI
Sinaida Igde, Susanna Röblitz, Anne Müller, Katharina Kolbe, Sophia Boden, Claudia Fessele, Thisbe Lindhorst, Marcus Weber, Laura Hartmann	Linear Precision Glycomacromolecules with Varying Interligand Spacing and Linker Functionalities Binding to Concanavalin A and the Bacterial Lectin FimH	Marcomolecular Bioscience, 17(12), p. 1700198, 2017	BibTeX DOI
Stefanie Winkelmann	Markov Control with Rare State Observation: Average Optimality	Markov Processes and Related Fields, Vol.23, pp. 1-34, 2017 (preprint available as ZIB-Report 16-59)	PDF (ZIB-Report) BibTeX
Xavier Garcia Santiago, Sven Burger, Carsten Rockstuhl, Ivan Fernandez-Corbaton	Measuring the electromagnetic chirality of 2D arrays under normal illumination	Opt. Lett., Vol.42, p. 4075, 2017	BibTeX DOI arXiv
Niklas Wulkow	Modelling the Spread of Innovations by a Markov Process in a Bayesian Framework	Master's thesis, Freie Universität Berlin, Christof Schütte, Marcus Weber (Advisors), 2017	PDF BibTeX URN
Lisa Brust	Moleküldynamik-Simulation via eines Faltungsansatzes im Potential	Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017	PDF BibTeX URN
Michael Hengartner, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Rainald Ehrig, Lanja Saleh, Katharina Spanaus, Cordula Schippert, Yuanyuan Zhang, Brigitte Leeners	Negative affect is unrelated to fluctuations in hormone levels across the menstrual cycle: evidence from a multisite observational study across two successive cycles	Journal of Psychosomatic Research, Vol.99, pp. 21-27, 2017	BibTeX DOI
Jonas Röhm	Non-Negative Matrix Factorization for Raman Data Spectral Analysis	Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017	PDF BibTeX URN
Felix Binkowski	On the convergence behavior of spectral deferred correction methods for convection-diffusion equations	Master's thesis, Technische Universität Berlin, Jörg Liesen, Martin Weiser (Advisors), 2017 (preprint available as ZIB-Report 17-53)	PDF (ZIB-Report) BibTeX
Lisa Fischer	On the convergence of inexact time parallel time integration	Master's thesis, Technische Universität Berlin, Martin Weiser, Kersten Schmidt (Advisors), 2017	BibTeX
Klaus Jäger, Grit Köppel, David Eisenhauer, Duote Chen, Martin Hammerschmidt, Sven Burger, Christiane Becker	Optical simulations of advanced light management for liquid-phase crystallized silicon thin-film solar cells	Proc. SPIE, Vol.10356, p. 103560F, 2017	BibTeX DOI
Yvonne Freytag	Optimal Experimental Design to Estimate the Time of Death in a Bayesian Context	Master's thesis, Technische Universität Berlin, Martin Weiser, Dietmar Hömberg (Advisors), 2017 (preprint available as ZIB-Report 17-14)	PDF (ZIB-Report) BibTeX
Frank Schmidt	Photonics	Handbook of Optoelectronic Device Modeling and Simulation, Joachim Piprek (Ed.), CRC Press, 2017, ISBN: 9781498749381	BibTeX
Jon Cockayne, Chris Oates, T. J. Sullivan, Mark Girolami	Probabilistic Numerical Methods for PDE-constrained Bayesian Inverse Problems	Proceedings of the 36th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, pp. 060001-1-060001-8, Vol.1853, AIP Conference Proceedings, 2017	BibTeX DOI arXiv
Martin Hammerschmidt, Martin Weiser, Xavier Garcia Santiago, Lin Zschiedrich, Bernd Bodermann, Sven Burger	Quantifying parameter uncertainties in optical scatterometry using Bayesian inversion	Proc. SPIE, Vol.10330, p. 1033004, 2017 (preprint available as ZIB-Report 17-37)	PDF (ZIB-Report) BibTeX DOI arXiv
Wei Zhang, Christof Schütte	Reliable approximation of long relaxation timescales in molecular dynamics	Entropy, 19(7), 2017 (preprint available as ZIB-Report 17-19)	PDF (ZIB-Report) BibTeX DOI
Nikolay Ledentsov, Jr., Vitaly Shchukin, Jörg-R. Kropp, Lin Zschiedrich, Frank Schmidt, Nikolay Ledentsov, Jr.	Resonant cavity light–emitting diodes based on dielectric passive cavity structures	Proc. SPIE, Vol.10124, p. 101240O, 2017	BibTeX DOI
Marcus Weber, Konstantin Fackeldey, Christof Schütte	Set-Free Markov State Model Building	Journal of Chemical Physics, 146(12), 2017 (preprint available as ZIB-Report 17-10)	PDF (ZIB-Report) BibTeX DOI
Rudolf Huttary, Leonid Goubergrits, Christof Schütte, Stefan Bernhard	Simulation, Identification and Statistical Variation in Cardiovascular Analysis (SISCA) - a Software Framework for Multi-compartment Lumped Modeling	Computers in Biology and Medicine, Vol.87, pp. 104-123, 2017	BibTeX DOI
David Eisenhauer, Grit Köppel, Klaus Jäger, Duote Chen, Oleksandra Shargaieva, Paul Sonntag, Daniel Armkreutz, Bernd Rech, Christiane Becker	Smooth anti-reflective three-dimensional textures for liquid phase crystallized silicon thin-film solar cells on glass	Sci. Rep., Vol.7, p. 2658, 2017	BibTeX arXiv DOI
Jannes Quer, Han Cheng Lie	Some connections between importance sampling and enhanced sampling methods in molecular dynamics	Journal of Chemical Physics, 2017 (accepted for publication on 2017-10-31, preprint available as ZIB-Report 17-30)	PDF (ZIB-Report) BibTeX
Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Benedikt Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte	Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data	BMC Bioinfomatics, 18(160), 2017	BibTeX DOI
Martin Weiser, Simone Scacchi	Spectral Deferred Correction methods for adaptive electro-mechanical coupling in cardiac simulation	G. Russo et al.(eds.) Progress in Industrial Mathematics at ECMI 2014, pp. 321-328, 2017 (preprint available as ZIB-Report 14-22)	PDF (ZIB-Report) BibTeX DOI
Oleksandra Makarenko	Square Root Approximation und statistische Umgewichtungstechnik für das Faltungsverhalten von Polymerbürsten	Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017	PDF BibTeX URN
Peter Deuflhard	The Grand Four	ZIB-Report 17-70	PDF BibTeX URN
Muluneh G. Abebe, Guillaume Gomard, Lin Zschiedrich, Carsten Rockstuhl, Ulrich W. Paetzold, Aimi Abass	Thermodynamics of Photon Recycling in Four Terminal Perovskite/si Tandem Solar Cells	Optical Nanostructures and Advanced Materials for Photovoltaics, p. PM4A.2, 2017	BibTeX DOI
Jan Müller, Sebastian Götschel, Martin Weiser, Christiane Maierhofer	Thermografie mit optimierter Anregung für die quantitative Untersuchung von Delaminationen in kohlenstofffaserverstärkten Kunststoffen	NDT.net Proc. DGZfP 2017, 2017	BibTeX
Gernot Bauer, Nadezhda Gribova, Alexander Lange, Christian Holm, Joachim Gross	Three-body effects in triplets of capped gold nanocrystals	Molecular Physics, Vol.115, pp. 1031-1040, 2017	BibTeX DOI
S. Rüdrich, Marco Sarich, Christof Schütte	Utilizing hitting times for ﬁnding metastable sets in non-reversible Markov chains	Journal of Comp. Dynamics, 2017 (under review, preprint available as ZIB-Report 14-32)	PDF (ZIB-Report) BibTeX
Carsten Hartmann, Lorenz Richter, Christof Schütte, Wei Zhang	Variational characterization of free energy: theory and algorithms	Entropy, 19(11), 2017 (preprint available as ZIB-Report 17-52)	PDF (ZIB-Report) BibTeX DOI
T. J. Sullivan	Well-posed Bayesian inverse problems and heavy-tailed stable quasi-Banach space priors	Inverse Problems and Imaging, 11(5), pp. 857-874, 2017 (preprint available as ZIB-Report 16-30)	PDF (ZIB-Report) BibTeX DOI arXiv
T. J. Sullivan	Well-posedness of Bayesian inverse problems in quasi-Banach spaces with stable priors	88th Annual Meeting of the International Association of Applied Mathematics and Mechanics (GAMM), Weimar 2017, pp. 871-874, 17(1), Proceedings in Applied Mathematics and Mechanics, 2017	BibTeX DOI arXiv
2016
Benjamin Wohlfeil, Georg Rademacher, Christos Stamatiadis, Karsten Voigt, Lars Zimmermann, Klaus Petermann	A Two Dimensional Fiber Grating Coupler on SOI for Mode Division Multiplexing	IEEE Photon. Technol. Lett., Vol.28, p. 1241, 2016	BibTeX DOI
Kaspar Bienefeld, Fred Zautke, Pooja Gupta	A novel method for undisturbed long-term observation of the honey bee (Apis mellifera) behaviour – illustrated by the hygienic behaviour towards Varroa infestation	Journal of Apicultural Research, Vol.54(5), pp. 541-547, 2016	BibTeX
Tomasz Badowski	Adaptive importance sampling via minimization of estimators of cross-entropy, mean square and inefficiency constants	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016	BibTeX URN
Felicia Burtscher	Algorithmic approaches to the change-point problem for ovulation detection in the human menstrual cycle	Bachelor's thesis, Freie Universität Berlin, Susanna Röblitz, Marcus Weber (Advisors), 2016	BibTeX
Larissa K. S. Krebek, von, Andreas J. Achazi, Marthe Solleder, Marcus Weber, Beate Paulus, Christoph A. Schalley	Allosteric and Chelate Cooperativity in Divalent Crown Ether–Ammonium Complexes with Strong Binding Enhancements	Chem. Eur. J., 22(43), pp. 15475-15484, 2016	BibTeX DOI
Rainald Ehrig, Thomas Dierkes, Stefan Schäfer, Susanna Röblitz, Enrico Tronci, Toni Mancini, Ivano Salvo, Vadim Alimguzhin, Federico Mari, Igor Melatti, Annalisa Massini, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille, Brigitte Leeners	An integrative approach for model driven computation of treatments in reproductive medicine	BIOMAT - Proceedings of the 15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2016 (preprint available as ZIB-Report 16-04)	PDF (ZIB-Report) BibTeX
Vedat Durmaz	Atomistic Binding Free Energy Estimations for Biological Host–Guest Systems	Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016	BibTeX
Peter Schnauber, Alexander Thoma, Christoph V. Heine, Alexander Schlehahn, Liron Gantz, Manuel Gschrey, Ronny Schmidt, Caspar Hopfmann, Benjamin Wohlfeil, Jan-Hindrick Schulze, Andre Strittmatter, Tobias Heindel, Sven Rodt, Ulrike Woggon, David Gershoni, Stephan Reitzenstein	Bright Single-Photon Sources Based on Anti-Reflection Coated Deterministic Quantum Dot Microlenses	Technologies, 4(1), p. 1, 2016	BibTeX DOI
Han Cheng Lie, T. J. Sullivan	Cameron--Martin theorems for sequences of Cauchy-distributed random variables	arXiv, p. 1608.03784, 2016	BibTeX arXiv
Han Cheng Lie, T. J. Sullivan	Cameron--Martin theorems for sequences of Cauchy-distributed random variables	ZIB-Report 16-40	PDF BibTeX URN
Philipp Gutsche, Raquel Mäusle, Sven Burger	Circular polarization phenomena in chiral nano-optical devices	Light, Energy and the Environment 2016, p. JW4A.4, OSA Technical Digest, 2016	BibTeX DOI
Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Sven Burger, Philipp Gutsche, Oleksiy S. Kim, Olav Breinbjerg, Ole Sigmund, Jesper Mork, Niels Gregersen	Comparison of four computational methods for computing Q factors and resonance wavelengths in photonic crystal membrane cavities	Proceedings of the 7th International Conference on Metamaterials, Photonic Crystals and Plasmonics, 2016	BibTeX
Adam Nielsen	Computation Schemes for Transfer Operators	Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016	BibTeX
Victor Soltwisch, Anton Haase, Jan Wernecke, Jürgen Probst, Max Schoengen, Sven Burger, Michael Krumrey, Frank Scholze	Correlated diffuse x-ray scattering from periodically nanostructured surfaces	Phys. Rev. B, Vol.94, p. 035419, 2016	BibTeX DOI arXiv
Adrian Sali	Coupling of Monodomain and Eikonal Models for Cardiac Electrophysiology	Master's thesis, Freie Universität Berlin, Martin Weiser (Advisor), 2016 (preprint available as ZIB-Report 16-50)	PDF (ZIB-Report) BibTeX
Martin Hammerschmidt, Carlo Barth, Sven Burger, Christiane Becker, Frank Schmidt	Determining 2D photonic crystal geometries from reflectance spectra with a reduced basis method	Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 281, 2016, ISBN: 978-1-5108-4796-5	BibTeX
Nikolay Ledentsov, Jr., Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Sven Burger, Frank Schmidt	Direct Evidence of the Leaky Emission in Oxide-Confined Vertical Cavity Lasers	IEEE J. Quant. Electron., 52(3), p. 2400207, 2016	BibTeX DOI
Nikolay Ledentsov, Jr., Vitaly Shchukin, Jörg-R. Kropp, Sven Burger, Frank Schmidt, Nikolay Ledentsov, Jr.	Direct visualization of the in-plane leakage of high-order transverse modes in vertical-cavity surface-emitting lasers mediated by oxide-aperture engineering	Proc. SPIE, Vol.9766, p. 976608, 2016	BibTeX DOI
Wei Zhang, Carsten Hartmann, Christof Schütte	Effective dynamics along given reaction coordinates, and reaction rate theory	Faraday Discussions, pp. 365-394, 2016 (preprint available as ZIB-Report 16-35)	PDF (ZIB-Report) BibTeX DOI
Bálint Fodor, Peter Kozma, Sven Burger, Miklos Fried, Peter Petrik	Effective medium approximation of ellipsometric response from random surface roughness simulated by finite-element method	Thin Solid Films, Vol.617, p. 20, 2016	BibTeX DOI arXiv
Katharina Heye, Dennis Becker, Christian Lütke-Eversloh, Vedat Durmaz, Thomas Ternes, Matthias Oetken, Jörg Oehlmann	Effects of carbamazepine and two of its metabolites on the non-biting midge Chironomus riparius in a sediment full life cycle toxicity test	Water Research, Vol.98, pp. 19-27, 2016	PDF BibTeX
Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz	Empirical Bayes Methods for Prior Estimation in Systems Medicine	ZIB-Report 16-57	PDF BibTeX URN arXiv
Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz	Empirical Bayes Methods, Reference Priors, Cross Entropy and the EM Algorithm	ZIB-Report 16-56	PDF BibTeX URN
Andreas Grever	Estimating Missing Entries of a Partial Mean First Passage Time Matrix	Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2016	PDF BibTeX URN
Natasa Djurdjevac Conrad, Marcus Weber, Christof Schütte	Finding dominant structures of nonreversible Markov processes	Multiscale Modeling and Simulation, 14(4), pp. 1319-1340, 2016 (preprint available as ZIB-Report 15-40)	PDF (ZIB-Report) BibTeX DOI
Iliusi Vega, Christof Schütte, Tim Conrad	Finding metastable states in real-world time series with recurrence networks	Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016	BibTeX DOI
Lin Zschiedrich, Frank Schmidt, Jan Pomplun, Sven Burger	Finite elements for nano-optics applications	Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 178, 2016, ISBN: 978-1-5108-4796-5	BibTeX
Alexander Lange, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz	Follicular maturation in cows: mathematical models and data	10. European Conference on Mathematical and Theoretical Biology, 2016	BibTeX
Andreas Spötter, Pooja Gupta, Manfred Mayer, Norbert Reinsch, Kaspar Bienefeld	Genome-wide association study of a Varroa-specific defense behavior in honeybees (Apis mellifera)	Journal of Heredity, 107(3), pp. 220-227, 2016	BibTeX
Jose Villatoro, Martin Zühlke, Daniel Riebe, Jens Riedel, Toralf Beitz, Hans-Gerd Löhmannsröben	IR-MALDI ion mobility spectrometry	Analytical and Bioanalytical Chemistry, 408(23), pp. 6259-6268, 2016	BibTeX DOI
José Villatoro, Martin Zühlke, Daniel Riebe, Toralf Beitz, Marcus Weber, Jens Riedel, Hans-Gerd Löhmannsröben	IR-MALDI ion mobility spectrometry: physical source characterization and application as HPLC detector	International Journal for Ion Mobility Spectrometry, pp. 197-297, 2016	BibTeX DOI
Hannah Schuh	Identification of Anisotropies in Welding Seams Using Ultrasound Measurements	Master's thesis, Technische Universität Berlin, Fredi Tröltzsch, Martin Weiser (Advisors), 2016	BibTeX
Carlo Barth, Sebastian Roder, Daniel Brodoceanu, Tobias Kraus, Sven Burger, Martin Hammerschmidt, Frank Schmidt, Christiane Becker	Increased fluorescence of PbS quantum dots on photonic crystal slab structures	Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 181, 2016, ISBN: 978-1-5108-4796-5	BibTeX
Martin Weiser	Inside Finite Elements	De Gruyter, 2016	BibTeX
Aimi Abass, Philipp Gutsche, Bjorn Maes, Carsten Rockstuhl, Emiliano R Martins	Insights into directional scattering: from coupled dipoles to asymmetric dimer nanoantennas	Opt. Express, 24(17), pp. 19638-19650, 2016	BibTeX DOI
Antti Lassila, Maksim Shpak, A. Vaigu, M. Smid, A. Velasco, A. Pokatilov, I. Fatadin, R. Ferguson, D. Robinson, T. Walbaum, Sven Burger, Mertsi Haapalainen, P. Vahimaa, H. Lukner, W. Pernice, R. Pitwon, A. Deninger, Jacques Morel, Natascia Castagna, O. Peters, H. Husu	Joint research for photonics fibres, waveguides and interconnects	Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 25, 2016, ISBN: 978-1-5108-4796-5	BibTeX
Philipp Gutsche, Raquel Mäusle, Sven Burger	Locally Enhanced and Tunable Optical Chirality in Helical Metamaterials	Photonics, Vol.3, p. 60, 2016	BibTeX DOI arXiv
Raheem Gul	Mathematical Modeling and Sensitivity Analysis of Lumped Parameter Model of the Human Cardiovascular System	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016	BibTeX URN
Stefan Schäfer, Julia Plöntzke, Susanna Röblitz	Mathematical Modelling of Follicular Maturation in Cows and Women	49. Jahrestagung der Physiologie und Pathologie der Fortpflanzung und gleichzeitig 41. Veterinär-Humanmedizinische Gemeinschaftstagung 2016, Leipzig., 2016 (epub ahead of print)	BibTeX
Raheem Gul, Christof Schütte, Stefan Bernhard	Mathematical modeling and sensitivity analysis of arterial anastomosis in arm arteries	Applied Mathematical Modelling, 2016 (preprint available as ZIB-Report 15-22)	PDF (ZIB-Report) BibTeX DOI
Jan Pomplun, Sven Burger, Lin Zschiedrich, Philipp Gutsche, Frank Schmidt	Method for fast computation of angular light scattering spectra from 2D periodic arrays	Proc. SPIE, Vol.9778, p. 977839, 2016	BibTeX DOI arXiv
Adman Daragmeh	Model Order Reduction of Linear Control Systems: Comparison of Balance Truncation and Singular Perturbation Approximation with Application to Optimal Control	Doctoral thesis, Freie Universität Berlin, Carsten Hartmann, Christof Schütte (Advisors), 2016	BibTeX URN
Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Sven Burger, Frank Schmidt	Model order reduction for the time-harmonic Maxwell equation applied to complex nanostructures	Proc. SPIE, Vol.9742, p. 97420M, 2016 (preprint available as ZIB-Report 16-05)	PDF (ZIB-Report) BibTeX DOI
Carsten Hartmann, Christof Schütte, Wei Zhang	Model reduction algorithms for optimal control and importance sampling of diffusions	Nonlinearity, 29(8), pp. 2298-2326, 2016	BibTeX DOI
Mohamed Omari, Julia Plöntzke, Mascha Berg, Susanna Röblitz	Modelling of glucose-insulin metabolism and its effect on the estrous cycle in bovine	Annual Meeting of the Population Approach Group in Europe, 2016	BibTeX
Marthe Solleder	Molecular Dynamics Simulations : What is the Effect of a Spin Probe on the Drug Loading of a Nanocarrier	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016	PDF BibTeX URN
Nikolay Ledentsov, Jr., Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Sven Burger, Frank Schmidt	New Generation of Vertical-Cavity Surface-Emitting Lasers for Optical Interconnects	Future Trends in Microelectronics: Journey into the Unknown, John Wiley & Sons, 2016	BibTeX DOI
Carlo Barth, Jürgen Probst, Sven Herrmann, Martin Hammerschmidt, Christiane Becker	Numerical characterization of symmetry properties for photonic crystals with hexagonal lattice	Proc. SPIE, Vol.9885, p. 988506, 2016	BibTeX DOI
Klaus Jäger, Martin Hammerschmidt, Grit Köppel, Sven Burger, Christiane Becker	On Accurate Simulations of Thin-Film Solar Cells With a Thick Glass Superstrate	Light, Energy and the Environment 2016, p. PM3B.5, OSA Technical Digest, 2016	BibTeX DOI
Peter Koltai, Giovanni Ciccotti, Christof Schütte	On Markov state models for non-equilibrium molecular dynamics	The Journal of Chemical Physics, 145(174103), 2016 (preprint available as ZIB-Report 16-11)	PDF (ZIB-Report) BibTeX DOI
Han Cheng Lie	On a strongly convex approximation of a stochastic optimal control problem for importance sampling of metastable diffusions	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016	BibTeX URN
Stefan Klus, Peter Koltai, Christof Schütte	On the numerical approximation of the Perron-Frobenius and Koopman operator	Journal of Computational Dynamics, 3(1), pp. 51-77, 2016	BibTeX DOI
David Eisenhauer, Klaus Jäger, Grit Köppel, Bernd Rech, Christiane Becker	Optical Properties of Smooth Anti-reflective Three-dimensional Textures for Silicon Thin-film Solar Cells	Energy Procedia, Vol.102, pp. 27-35, 2016	BibTeX DOI
Philipp Gutsche, Lisa Poulikakos, Sven Burger, Martin Hammerschmidt, Frank Schmidt	Optical chirality: conservation law in arbitrary space	606. WE-Heraeus-Seminar on Nanophotonics and Complex Spatial Modes of Light, 2016	BibTeX
Martin Hammerschmidt	Optical simulation of complex nanostructured solar cells with a reduced basis method	Doctoral thesis, Freie Universität Berlin, Frank Schmidt, Bernd Rech, Ralf Kornhuber (Advisors), 2016	BibTeX URN
Philipp Gutsche, Matthias Läuter, Frank Schmidt	Parameter-dependent Parallel Block Sparse Arnoldi and Döhler Algorithms on Distributed Systems	ZIB-Report 16-15	PDF BibTeX URN
Animesh Agarwal	Path Integral Techniques in Molecular Dynamics Simulations of Open Boundary Systems	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016	BibTeX URN
Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz	Prior estimation and Bayesian inference from large cohort data sets	ZIB-Report 16-09	PDF PDF BibTeX URN
Sebastian Götschel, Christiane Maierhofer, Jan Müller, Nick Rothbart, Martin Weiser	Quantitative Defect Reconstruction in Active Thermography for Fiber-Reinforced Composites	Proceedings 19th World Conference on Non-Destructive Testing (WCNDT 2016), 2016 (preprint available as ZIB-Report 16-13)	PDF (ZIB-Report) BibTeX
Sebastian Götschel, Christian Höhne, Sanjeevareddy Kolkoori, Steffen Mitzscherling, Jens Prager, Martin Weiser	Ray Tracing Boundary Value Problems: Simulation and SAFT Reconstruction for Ultrasonic Testing	Proceedings 19th World Conference on Non-Destructive Testing (WCNDT 2016), 2016 (preprint available as ZIB-Report 16-14)	PDF (ZIB-Report) BibTeX
Iliusi Vega	Reconstruction and analysis of the state space for the identification of dynamical states in real-world time-series	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016	BibTeX URN
Alexander Lange	Reconstruction of disease transmission rates: applications to measles, dengue, and influenza	Journal of Theoretical Biology, Vol.400, pp. 138-153, 2016	BibTeX DOI
Martin Hammerschmidt, Carlo Barth, Jan Pomplun, Sven Burger, Christiane Becker, Frank Schmidt	Reconstruction of photonic crystal geometries using a reduced basis method for nonlinear outputs	Proc. SPIE, Vol.9756, p. 97561R, 2016 (preprint available as ZIB-Report 16-06)	PDF (ZIB-Report) BibTeX DOI URN
Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Sven Burger, Frank Schmidt	Reduced basis method for electromagnetic scattering problem: a case study for FinFETs	Optical and Quantum Electronics, Vol.48, p. 250, 2016 (preprint available as ZIB-Report 16-10)	PDF (ZIB-Report) BibTeX DOI
Phillip Manley	Simulation of Plasmonic Nanoparticles in Thin Film Solar Cells	Doctoral thesis, Freie Universität Berlin, Martina Schmid, Frank Schmidt (Advisors), 2016	PDF BibTeX URN
Klaus Jäger, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker	Simulations of sinusoidal nanotextures for coupling light into c-Si thin-film solar cells	Opt. Express, Vol.24, p. A569, 2016	BibTeX DOI
Klaus Jäger, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker	Sinusoidal Nanotextures for Enhanced Light Management in Thin-Film Solar Cells	28th Workshop on Quantum Solar Energy Conversion - (QUANTSOL), European Society for Quantum Solar Energy Conversion (Ed.), 2016	PDF BibTeX
Klaus Jäger, Grit Köppel, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker	Sinusoidal gratings for optimized light management in c-Si thin-film solar cells	Proc. SPIE, Vol.9898, p. 989808, 2016	BibTeX DOI
Patrick Gelß, Sebastian Matera, Christof Schütte	Solving the master equation without kinetic Monte Carlo: Tensor train approximations for a CO oxidation model	Journal of Computational Physics, Vol.314, pp. 489-502, 2016	BibTeX DOI
Nisara Sriwattanaworachai	Spectral approach to metastability of non-reversible complex processes	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016	BibTeX
Carlo Barth, Sven Burger, Christiane Becker	Symmetry-Dependency of Anticrossing Phenomena in Slab-Type Photonic Crystals	Opt. Express, Vol.24, p. 10931, 2016	BibTeX DOI
Philipp Gutsche, Raquel Mäusle, Sven Burger	Tailoring local optical chirality in helical metamaterials	2016 10th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, pp. 73-75, IEEE, 2016	BibTeX DOI
Jon Wilson, Sven Herrmann, Philipp Gutsche, Sven Burger, Kevin McPeak	The Chiral Coefficient: Rapid Optimization of Broadband Plasmonic Chirality	2016 MRS Fall Meeting & Exhibit, 2016	BibTeX
Adam Nielsen	The Monte Carlo Computation Error of Transition Probabilities	Statistics & Probability Letters, Vol.118, pp. 163-170, 2016 (preprint available as ZIB-Report 16-37)	PDF (ZIB-Report) BibTeX DOI
Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris	The Optical Chirality Flux as a Useful Far-Field Probe of Chiral Near Fields	ACS Photonics, Vol.3, p. 1619, 2016	BibTeX arXiv DOI
Stefanie Winkelmann, Christof Schütte	The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling	Journal of Chemical Physics, 145(21), 2016 (preprint available as ZIB-Report 16-60)	PDF PDF (ZIB-Report) BibTeX DOI
Philipp Gutsche, Lisa Poulikakos, Martin Hammerschmidt, Sven Burger, Frank Schmidt	Time-harmonic optical chirality in inhomogeneous space	Proc. SPIE, Vol.9756, p. 97560X, 2016	BibTeX DOI arXiv
Stefan Klus, Christof Schütte	Towards tensor-based methods for the numerical approximation of the Perron-Frobenius and Koopman operator	Journal of Computational Dynamics, 3(2), pp. 139-161, 2016	BibTeX DOI
Guillaume Sagnol, Hans-Christian Hege, Martin Weiser	Using sparse kernels to design computer experiments with tunable precision	ZIB-Report 16-33 (Appeared in: Ana Colubi, Angela Blanco and Cristian Gatu (eds.) 22nd Intern. Conf. on Computational Statistics - COMSTAT 2016, Oviedo, Spain, 23-26 August 2016, Proceedings ISBN 978-90-73592-36-0. Pp. 397-408)	PDF BibTeX URN
Christian Tobias Willenbockel, Christof Schütte	Variational Bayesian Inference and Model Selection for the Stochastic Block Model with Irrelevant Vertices	ZIB-Report 16-01	PDF BibTeX URN
2015
Christof Schütte, Marco Sarich	A Critical Appraisal of Markov State Models	The European Physical Journal Special Topics, 224(12), pp. 2445-2462, 2015 (preprint available as ZIB-Report 15-18)	PDF (ZIB-Report) BibTeX DOI
Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris	A Far-Field Interpretation of Optical Chirality in Analogy to Poynting’s Theorem	META '15 Proceedings, pp. 1215-1216, 2015	BibTeX
Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris	A Far-Field Interpretation of the Optical Chirality	Frontiers in Nanophotonics (Congressi Stefano Franscini), 2015	BibTeX
Heide Boeth, Georg N. Duda, Daniel Hinzmann, Sandra Hermann, William R. Taylor, Rainald Ehrig, Tom Witaschek, Frank Buttgereit	A Novel Approach to Quantify Morning Stiffness in Patients with Rheumatoid Arthritis	Annual European Congress of Rheumatology, EULAR 2015, Rome, 2015	BibTeX
Christian Tobias Willenbockel, Christof Schütte	A Variational Bayesian Algorithm for Clustering of Large and Complex Networks	ZIB-Report 15-25	PDF BibTeX URN
Peter Deuflhard, Susanna Röblitz	A guide to numerical modelling in systems biology	Springer, 2015, ISBN: 978-3-319-20058-3	BibTeX DOI
Kaspar Bienefeld, Andreas Spötter, Norbert Reinsch, Manfred Mayer, Pooja Gupta	A new approach for honeybee breeding - genomic selection	44th Apimondia International Apicultural congress, 2015. Daejeon, South Korea, 2015	BibTeX
Julia Plöntzke, Mascha Berg, Claudia Stötzel, Susanna Röblitz	A systems biology approach to bovine fertility and metabolism: Introduction of a glucose insulin model	15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2015 (preprint available as ZIB-Report 15-51)	PDF (ZIB-Report) BibTeX
Sebastian Götschel	Adaptive Lossy Trajectory Compression for Optimal Control of Parabolic PDEs	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2015	BibTeX
Lars Lubkoll	An Optimal Control Approach to Implant Shape Design : Modeling, Analysis and Numerics	Doctoral thesis, Universität Bayreuth, Anton Schiela (Advisor), 2015	BibTeX
Christoph Lange	Approximating and Clustering Markov Chains via Kullback-Leibler-Divergence	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015	BibTeX
Claudia Stötzel, Susanna Röblitz, Heike Siebert	Complementing ODE-based System Analysis Using Boolean Networks Derived from an Euler-like Transformation	PLOS ONE, 2015 (preprint available as ZIB-Report 15-46)	PDF (ZIB-Report) BibTeX DOI
Vedat Durmaz, Marcus Weber, Meyer, Mückter	Computergestützte Simulationen zur Abschätzung gesundheitlicher Risiken durch anthropogene Spurenstoffe der Wassermatrix	KA Korrespondenz Abwasser, Abfall, Vol.3/15, pp. 264-267, 2015	BibTeX
Adam Nielsen, Marcus Weber	Computing the nearest reversible Markov chain	Numerical Linear Algebra with Applications, 22(3), pp. 483-499, 2015 (preprint available as ZIB-Report 14-48)	PDF (ZIB-Report) BibTeX DOI
Thomas Dierkes	Construction of ODE systems from time series data by a highly flexible modelling approach	ArXiv e-prints, Vol.math.NA 1512.03357, 2015 (preprint available as ZIB-Report 15-59)	PDF PDF (ZIB-Report) BibTeX
Philipp Gutsche, Christian Wolff, Sayyed R. Mirnaziry, Christopher G. Poulton	Coupled-Mode Equations for Stimulated Brillouin Scattering	CUDOS 14th Annual Workshop 2015 Handbook, 2015	BibTeX
Konstantin Fackeldey	Crossing the Scales in Structural Mechanics and Molecular Research	Habilitation, Technische Universität Berlin, 2015	BibTeX
Phillip Manley, Sven Burger, Frank Schmidt, Martina Schmid	Design Principles for Plasmonic Nanoparticle Devices	Progress in Nonlinear Nano-Optics, Shuji Sakabe, Christoph Lienau, Rüdiger Grunwald (Eds.), Springer, Nano-Optics and Nanophotonics, pp. 223-247, 2015	BibTeX arXiv DOI
Carlo Barth, Klaus Jäger, Sven Burger, Martin Hammerschmidt, Frank Schmidt, Christiane Becker	Design of Photonic Crystals with Near-Surface Field Enhancement	Light, Energy and the Environement 2015, p. JTu5A.9, OSA Technical Digest, 2015	BibTeX DOI
Oliver Zwingel	Die Cross-Entropy-Methode für stochastische Optimierungsprobleme	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015	BibTeX
Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Gunther Steinle, Nikolay Ledentsov, Jr., Kent D. Choquette, Sven Burger, Frank Schmidt	Engineering of optical modes in vertical-cavity microresonators by aperture placement: applications to single-mode and near-field lasers	Proc. SPIE, p. 93810V, Vol.9381, 2015	BibTeX DOI
Marcus Weber, Jannes Quer	Estimating exit rates in rare event dynamical systems via extrapolation	ZIB-Report 15-54	PDF PDF BibTeX URN
Martin Weiser	Faster SDC convergence on non-equidistant grids by DIRK sweeps	BIT Numerical Mathematics, 55(4), pp. 1219-1241, 2015 (preprint available as ZIB-Report 13-30)	PDF (ZIB-Report) BibTeX DOI
Peter Petrik, Nitish Kumar, Miklos Fried, Bálint Fodor, György Juhász, Silvania Pereira, Sven Burger, H. Paul Urbach	Fourier ellipsometry – an ellipsometric approach to Fourier scatterometry	J. Eur. Opt. Soc.-Rapid, Vol.10, p. 15002, 2015	BibTeX DOI
Marcus Weber, Konstantin Fackeldey	G-PCCA: Spectral Clustering for Non-reversible Markov Chains	ZIB-Report 15-35	PDF BibTeX URN
Frank Abendroth, Marthe Solleder, Pia Welker, Kai Licha, Marcus Weber, Oliver Seitz, Dorothea Mangoldt	High affinity flourescence labelled ligands for the estrogen receptor	Eur. J. Org. Chem., 2015(10), pp. 2157-2166, 2015	BibTeX
Nikolay Ledentsov, Jr., Jörg-R. Kropp, Vitaly Shchukin, Gunther Steinle, Nikolay Ledentsov, Jr., Jarek P. Turkiewicz, Bo Wu, Qiu Shaofeng, Yanan Ma, Feng Zhiyong, Sven Burger, Frank Schmidt, Christoph Caspar, Ronald Freund, Kent D. Choquette	High-speed modulation, wavelength, and mode control in vertical-cavity surface-emitting lasers	Proc. SPIE, p. 93810F, Vol.9381, 2015	BibTeX DOI
Manuel Gschrey, Alexander Thoma, Peter Schnauber, Marc Seifried, Ronny Schmidt, Benjamin Wohlfeil, Luzy Krüger, Jan-Hindrick Schulze, Tobias Heindel, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Stephan Reitzenstein	Highly indistinguishable photons from deterministic quantum-dot microlenses utilizing three-dimensional in situ electron-beam lithography	Nature Communications, Vol.6, p. 7662, 2015	BibTeX DOI
Sven Burger, Philipp Gutsche, Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Frank Schmidt, Benjamin Wohlfeil, Lin Zschiedrich	Hp-finite-elements for simulating electromagnetic fields in optical devices with rough textures	Proc. SPIE, p. 96300S, Vol.9630, 2015	BibTeX DOI arXiv
Sinaida Igde, Hendrik Wölk, Susanna Röblitz, Marco Reidelbach, Marcus Weber, Laura Hartmann	Identifying Multivalent Binding Kinetics of Precision Glycomacromolecules: A Kinetic Study Using kinITC	Münster Symposium on Cooperative Effects 2015 - SFB 858, at Westfälische Wilhelms-Universität Münster, 2015, 2015	BibTeX
Christian Wolff, Philipp Gutsche, Michael J. Steel, Benjamin J. Eggleton, Christopher G. Poulton	Impact of nonlinear loss on stimulated Brillouin scattering	J. Opt. Soc. Am. B, 32(9), pp. 1968-1978, 2015	BibTeX DOI arXiv
Alexander Thoma, Peter Schnauber, Manuel Gschrey, Ronny Schmidt, Benjamin Wohlfeil, Marc Seifried, Jan-Hindrick Schulze, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Tobias Heindel, Stephan Reitzenstein	Indistinguishable Photons from Deterministic Quantum Dot Microlenses	European Conference on Lasers and Electro-Optics - European Quantum Electronics Conference, p. EA_8_5, 2015	PDF BibTeX DOI
Alexander Thoma, Peter Schnauber, Manuel Gschrey, Ronny Schmidt, Benjamin Wohlfeil, Marc Seifried, Jan-Hindrick Schulze, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Tobias Heindel, Stephan Reitzenstein	Indistinguishable Photons from Deterministically Fabricated Quantum Dot Microlenses	Advanced Photonics, p. IS4A.6, OSA Technical Digest, 2015	BibTeX DOI
Marta Enciso, Christof Schütte, Luigi Delle Site	Influence of pH and sequence in peptide aggregation via molecular simulation	Journal of Chemical Physics, 143(24), 2015 (preprint available as ZIB-Report 15-42)	PDF (ZIB-Report) BibTeX DOI
Benjamin Wohlfeil	Integrated fiber grating couplers in silicon photonics	Doctoral thesis, Technische Universität Berlin, Klaus Petermann (Advisor), 2015	BibTeX DOI
Maryam Hajizadeh, Pascal Schütz, Renate List, Heide Boeth, Rainald Ehrig, Barbara Postolka, Michael A. R. Freeman, William R. Taylor	Interpretation of tibio-femoral kinematics critically depends upon the kinematic analysis approach	ISB 2015, 25th congress of the International Society of Biomechanics, Glasgow, 2015	BibTeX
T. J. Sullivan	Introduction to Uncertainty Quantification	Springer, 2015, ISBN: 978-3-319-23394-9	BibTeX DOI
Susanne Röhl	Kondition des Eigenwertproblems von Markov-Ketten	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015	BibTeX
Jessica Schöpke	Korrelation für lineare und nichtlineare Zusammenhänge	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015	BibTeX
Jessica Schöpke	Korrelation für lineare und nichtlineare Zusammenhänge	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015	BibTeX
Sebastian Götschel, Martin Weiser	Lossy Compression for PDE-constrained Optimization: Adaptive Error Control	Comput. Optim. Appl., 62(1), pp. 131-155, 2015 (preprint available as ZIB-Report 13-27)	PDF PDF (ZIB-Report) BibTeX
Christof Schütte, Adam Nielsen, Marcus Weber	Markov State Models and Molecular Alchemy	Molecular Physics, 113(1), pp. 69-78, 2015 (preprint available as ZIB-Report 14-05)	PDF (ZIB-Report) BibTeX DOI
Vedat Durmaz	Markov model-based polymer assembly from force field-parameterized building blocks	Journal of Computer-Aided Molecular Design, Vol.29, pp. 225-232, 2015	BibTeX DOI
Martin Krämer, Karl-Heinz Herrmann, Heide Boeth, Christoph von Tycowicz, Christian König, Stefan Zachow, Rainald Ehrig, Hans-Christian Hege, Georg N. Duda, Jürgen Reichenbach	Measuring 3D knee dynamics using center out radial ultra-short echo time trajectories with a low cost experimental setup	ISMRM (International Society for Magnetic Resonance in Medicine), 23rd Annual Meeting 2015, Toronto, Canada, 2015	BibTeX
Natasa Djurdjevac Conrad, Ralf Banisch, Christof Schütte	Modularity of Directed Networks: Cycle Decomposition Approach	Journal of Computational Dynamics 2 (2015) pp. 1-24, 2015 (preprint available as ZIB-Report 14-31)	PDF (ZIB-Report) BibTeX DOI
Annett Meier	Monte-Carlo-Verfahren zur Niedrig-Rang Approximation	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015	BibTeX
Heide Boeth, Georg N. Duda, Daniel Hinzmann, William R. Taylor, Rainald Ehrig, Tom Witaschek, Frank Buttgereit	Objektive Quantifizierung der Morgensteifigkeit als Parameter für rheumatoide Arthritis im Metacarpophalangealgelenk	9. Jahrestagung der Deutschen Gesellschaft für Biomechanik (DGfB), Bonn, 2015	BibTeX
Houman Owhadi, Clint Scovel, T. J. Sullivan	On the Brittleness of Bayesian Inference	SIAM Review, 57(4), pp. 566-582, 2015	BibTeX DOI
Thomas Dierkes, Karl Michael Ortmann	On the efficient utilisation of duration	Insurance: Mathematics and Economics, Vol.60, pp. 29-37, 2015	BibTeX DOI
Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist	Optimal Treatment Strategies in the Context of 'Treatment for Prevention' against HIV/1 in Resource-Poor Settings	PloS Computational Biology, 11(4), 2015	BibTeX DOI
Dany Pascal Moualeu-Ngangue, Martin Weiser, Rainald Ehrig, Peter Deuflhard	Optimal control for a tuberculosis model with undetected cases in Cameroon	Communications in Nonlinear Science and Numerical Simulation, 20(3), pp. 986-1003, 2015 (preprint available as ZIB-Report 13-73)	PDF (ZIB-Report) BibTeX DOI
Alexander Sikorski	PCCA+ and Its Application to Spatial Time Series Clustering	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015	PDF BibTeX URN
Dany Pascal Moualeu-Ngangue, Susanna Röblitz, Rainald Ehrig, Peter Deuflhard	Parameter Identification in a Tuberculosis Model for Cameroon	PLOS ONE, 2015 (preprint available as ZIB-Report 13-72)	PDF (ZIB-Report) BibTeX DOI
Koschek, Vedat Durmaz, Krylova, Wieczorek, Pooja Gupta, Richter, Alexander Bujotzek, Fischer, Rainer Haag, Freund, Marcus Weber, Rademann	Peptide polymer ligands for a tandem WW-domain, a soft multivalent protein-protein interaction: lessons on the thermodynamic fitness of flexible ligands	Beilstein J. Org. Chem., Vol.11, pp. 837-847, 2015	BibTeX
Christian Wolff, Philipp Gutsche, Michael J. Steel, Benjamin J. Eggleton, Christopher G. Poulton	Power limits and a figure of merit for stimulated Brillouin scattering in the presence of third and fifth order loss	Opt. Express, 23(20), pp. 26628-26638, 2015	BibTeX DOI arXiv
Peter Deuflhard, Hans-Christian Hege	Raumtiefe in Malerei und Computergrafik	Räume - Bilder - Kulturen, pp. 33-46, Verena Lepper, Peter Deuflhard, Christoph Markschies (Eds.), Walter De Gruyter, 2015, ISBN: 978-3-11-035993-0	BibTeX
Ralf Banisch, Natasa Djurdjevac Conrad, Christof Schütte	Reactive flows and unproductive cycles for random walks on complex networks	The European Physical Journal Special Topics, vol. 224, iss. 12 (2015) pp. 2369-2387, 2015 (preprint available as ZIB-Report 15-19)	PDF (ZIB-Report) BibTeX DOI
Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Lin Zschiedrich, Sven Burger, Frank Schmidt	Reduced basis method for Maxwell's equations with resonance phenomena	ZIB-Report 15-37 (Proc. SPIE 9630, 96300R (2015))	PDF BibTeX URN DOI
Sven Burger, Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Frank Schmidt	Reduced basis methods for optimization of nano-photonic devices	Proc. Int. Conf. Numerical Simulation of Optoelectronic Devices (NUSOD), p. 159, 2015	BibTeX DOI
Sebastian Götschel, Christoph von Tycowicz, Konrad Polthier, Martin Weiser	Reducing Memory Requirements in Scientific Computing and Optimal Control	Multiple Shooting and Time Domain Decomposition Methods, T. Carraro, M. Geiger, S. Koerkel, R. Rannacher (Eds.), pp. 263-287, 2015	PDF BibTeX
	Räume - Bilder - Kulturen	Verena Lepper, Peter Deuflhard, Christoph Markschies (Eds.), De Gruyter, 2015, ISBN: 978-3-11-035993-0	BibTeX
Emil Agcos, Bernd Bodermann, Sven Burger, Gaoliang Dai, Johannes Endres, Poul-Erik Hansen, Lars Nielson, Morten Madsen, Sebastian Heidenreich, Michael Krumrey, Bernd Loechel, Jürgen Probst, Frank Scholze, Victor Soltwisch, Matthias Wurm	Scatterometry reference standards to improve tool matching and traceability in lithographical nanomanufacturing	Proc. SPIE, p. 955610, Vol.9556, 2015	BibTeX DOI
Klaus Jäger, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker	Sinusoidal Nanotextures for Coupling Light into c-Si Thin-Film Solar Cells	Light, Energy and the Environement 2015, p. PTu4B.3, OSA Technical Digest, 2015	BibTeX DOI
Ivan Kryven, Susanna Röblitz, Christof Schütte	Solution of the chemical master equation by radial basis functions approximation with interface tracking	BMC Systems Biology, 9(67), pp. 1-12, 2015	PDF BibTeX DOI
Patrick Gelß, Sebastian Matera, Christof Schütte	Solving the master equation without kinetic Monte Carlo: tensor train approximations for a CO oxidation model	ZIB-Report 15-41	PDF BibTeX URN
Stefan Bojarovski, Hans-Christian Hege, Han Cheng Lie, Marcus Weber	Topological analysis and visualization of scalar functions characterizing conformational transitions of molecules on multiple time-scales	Shape Up 2015 - Exercises in Materials Geometry and Topology, 14-18 Sept. 2015, Berlin, Germany, 2015	BibTeX
Kevin McPeak, Christian D. van Engers, Sarah Bianchi, Aurelio Rossinelli, Lisa Poulikakos, Laetitia Bernard, Sven Herrmann, David K. Kim, Sven Burger, Mark Blome, Sriharsha V. Jayanti, David Norris	Ultraviolet Plasmonic Chirality from Colloidal Aluminum Nanoparticles Exhibiting Charge-Selective Protein Detection	Adv. Mater., Vol.27, p. 6244, 2015	BibTeX DOI
Jakob Schneck	Zielorientierte Fehlerschätzer für die Topologieoptimierung	Master's thesis, Technische Universität Berlin, Martin Weiser (Advisor), 2015	PDF BibTeX URN
Sven Burger, Lin Zschiedrich, Jan Pomplun, Sven Herrmann, Frank Schmidt	hp-finite element method for simulating light scattering from complex 3D structures	Proc. SPIE, p. 94240Z, Vol.9424, 2015	BibTeX DOI arXiv
2014
Christiane Becker, Philippe Wyss, David Eisenhauer, Jürgen Probst, Veit Preidel, Martin Hammerschmidt, Sven Burger	5 x 5 cm2 silicon photonic crystal slabs on glass and plastic foil exhibiting broadband absorption and high-intensity near-fields	Sci. Rep., Vol.4, p. 5886, 2014	BibTeX DOI
Dorian Krause, Konstantin Fackeldey, Rolf Krause	A Parallel Multiscale Simulation Toolbox for Coupling Molecular Dynamics and Finite Elements	Singular Phenomena and Scaling in Mathematical Models, pp. 327-346, 2014 (preprint available as ZIB-Report 13-50)	PDF (ZIB-Report) BibTeX DOI
Daniel Lockau, Martin Hammerschmidt, Jan Haschke, Mark Blome, Florian Ruske, Frank Schmidt, Bernd Rech	A comparison of scattering and non-scattering anti-reflection designs for back contacted polycrystalline thin film silicon solar cells in superstrate configuration	Proc. SPIE, p. 914006, Vol.9140, Photonics for Solar Energy Systems, 2014	BibTeX DOI
Philipp Gutsche, Thomas Judd, Frank Schmidt	A convergence study of different Rigorous Coupled Wave Analysis (RCWA) approaches to time-harmonic electromagnetic scattering problems with applications to nanooptical structures	Verhandlungen der Deutschen Physikalischen Gesellschaft (DPG-Frühjahrstagung Berlin 2014), 2014	BibTeX
Claudia Stötzel, Mochamad Apri, Susanna Röblitz	A reduced ODE model of the bovine estrous cycle	ZIB-Report 14-33	PDF BibTeX URN
Martin Hammerschmidt, Jan Pomplun, Sven Burger, Frank Schmidt	Adaptive sampling strategies for effcient parameter scans in nano-photonic device simulations	Proc. SPIE, p. 89801O, Vol.8980, 2014 (preprint available as ZIB-Report 14-20)	PDF (ZIB-Report) BibTeX DOI
Manuel Gschrey, Marc Seifried, Luzy Krüger, Ronny Schmidt, Jan-Hindrick Schulze, Tobias Heindel, Sven Burger, Sven Rodt, Frank Schmidt, Andre Strittmatter, Stephan Reitzenstein	Advanced Quantum Light Sources: Modelling and Realization by Deterministic Nanofabrication Technologies	Integrated Photonics Research, Silicon and Nanophotonics, p. IW1A.3, Vol.IPRSN, 2014	BibTeX DOI
Alexander Bockmayr, Heike Siebert, Susanna Röblitz, Christof Schütte, Peter Deuflhard	Advanced mathematical modeling in systems biology	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 29-44, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutela, Jürgen Sprekels (Eds.), European Mathematical Society, 2014	BibTeX
Daniel Lockau, Tobias Sontheimer, Veit Preidel, Florian Ruske, Martin Hammerschmidt, Christiane Becker, Frank Schmidt, Bernd Rech	Advanced microhole arrays for light trapping in thin film silicon solar cells	Solar Energy Materials and Solar Cells, Vol.125, pp. 298-304, 2014	BibTeX DOI
Lars Lubkoll, Anton Schiela, Martin Weiser	An optimal control problem in polyconvex hyperelasticity	SIAM J. Control Opt., 52(3), pp. 1403-1422, 2014 (preprint available as ZIB-Report 12-08)	PDF (ZIB-Report) BibTeX DOI
Wei Zhang, Han Wang, Carsten Hartmann, Marcus Weber, Christof Schütte	Applications of the cross-entropy method to importance sampling and optimal control of diffusions	Siam Journal on Scientific Computing, 36(6), pp. A2654-A2672, 2014 (preprint available as ZIB-Report 14-10)	PDF (ZIB-Report) BibTeX DOI
Mark Blome, Kevin McPeak, Sven Burger, Frank Schmidt, David Norris	Back-reflector design in thin-film silicon solar cells by rigorous 3D light propagation modeling	COMPEL: Int. J. Comput. Mathem. Electr. Electron. Eng., 33(4), pp. 1282-1295, 2014	BibTeX DOI
Marthe Solleder	Bewertung von Transformationsprodukten im Wasserkreislauf durch Computersimulationen	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2014	BibTeX
Manuel Gschrey, Marc Seifried, Luzy Krüger, Ronny Schmidt, Jan-Hindrick Schulze, Tobias Heindel, Sven Burger, Sven Rodt, Frank Schmidt, Andre Strittmatter, Stephan Reitzenstein	Boosting the photon-extraction efficiency of nanophotonic structures by deterministic microlenses	CLEO: 2014, p. FF2K.2, 2014	BibTeX DOI
Han Wang, Christof Schütte	Building Markov State Models for Periodically Driven Non-Equilibrium Systems	ZIB-Report 14-46	PDF BibTeX URN
Animesh Agarwal, Han Wang, Christof Schütte, Luigi Delle Site	Chemical potential of liquids and mixtures via Adaptive Resolution Simulation	The Journal of Chemical Physics, Vol.141, p. 034102, 2014 (preprint available as ZIB-Report 14-25)	PDF (ZIB-Report) BibTeX DOI
Kevin McPeak, Christian D. van Engers, Mark Blome, Jong Hyuk Park, Sven Burger, Miguel A. Gosalvez, Ava Faridi, Yasmina Ries, Ayaskanta Sahu, David Norris	Complex Chiral Colloids and Surfaces via High-Index Off-Cut Silicon	Nano Lett., 14(5), pp. 2934-2940, 2014	BibTeX DOI
Marcus Weber, Konstantin Fackeldey	Computing the Minimal Rebinding Effect Included in a Given Kinetics	Multiscale Model. Simul., 12(1), pp. 318-334, 2014 (preprint available as ZIB-Report 13-12)	PDF (ZIB-Report) BibTeX DOI
Philipp Gutsche	Convergence Study of the Fourier Modal Method for Nano-optical Scattering Problems in Comparison with the Finite Element Method	Master's thesis, Eberhard Karls Universität Tübingen, Thomas Judd, Frank Schmidt (Advisors), 2014	PDF BibTeX URN
Ralf Banisch, Natasa Djurdjevac Conrad	Cycle-flow-based module detection in directed recurrence networks	EPL (Europhysics Letters), 108(6), 2014	BibTeX DOI
Ralf Frech	Das Konzept der Flussdichte und sein Bezug zur Bohmschen Mechanik	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2014	BibTeX
Christof Schütte, Peter Deuflhard, Frank Noé, Marcus Weber	Design of functional molecules	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 49-65, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014	BibTeX
Victor Soltwisch, Jan Wernecke, Anton Haase, Jürgen Probst, Max Schoengen, Frank Scholze, Jan Pomplun, Sven Burger	Determination of line profile on nanostructured surfaces using EUV and x-ray scattering	Proc. SPIE, p. 92351D, Vol.9235, 2014	BibTeX DOI
Frank Scholze, Bernd Bodermann, Sven Burger, Johannes Endres, Anton Haase, Michael Krumrey, Christian Laubis, Victor Soltwisch, Albrecht Ullrich, Jan Wernecke	Determination of line profiles on photomasks using DUV, EUV and X-ray scattering	Proc. SPIE, p. 92310M, Vol.9231, 2014	BibTeX DOI
Samuel Wiesendanger, Thomas Bischoff, Vladislav Jovanov, Dietmar Knipp, Sven Burger, Falk Lederer, Carsten Rockstuhl	Effects of film growth modes on light trapping in silicon thin film solar cells	Appl. Phys. Lett., 104(23), p. 231103, 2014	BibTeX DOI
Claudia Stötzel, Rainald Ehrig, H. Marike T. Boer, Julia Plöntzke, Susanna Röblitz	Exploration of different wave patterns in a model of the bovine estrous cycle by Fourier analysis	BIOMAT - Proceedings of the 14th International Symposium on Mathematical and Computational Biology, Bedlewo, Poland, 2014 (preprint available as ZIB-Report 16-02)	PDF (ZIB-Report) BibTeX
Han Wang, Christof Schütte, Giovanni Ciccotti, Luigi Delle Site	Exploring the conformational dynamics of alanine dipeptide in solution subjected to an external electric field: A nonequilibrium molecular dynamics simulation	Journal of Chemical Theory and Computation, 10(4), pp. 1376-1386, 2014	BibTeX DOI
Han Wang, Christof Schütte, Giovanni Ciccotti, Max von Kleist	Exploring the conformational dynamics of alanine dipeptide in solution subjected to an external electric field: A nonequilibrium molecular dynamics simulation	Journal of Chemical Theory and Computation, 10(4), pp. 1376-1386, 2014	BibTeX DOI
Christoph Menzel, Erik Hebestreit, Rasoul Alaee, Mohammad Albooyeh, Stefan Mühlig, Sven Burger, Carsten Rockstuhl, Constantin Simovski, Sergei Tretyakov, Falk Lederer, Thomas Pertsch	Extreme Coupling: a route towards local magnetic metamaterials	Phys. Rev. B, Vol.89, p. 155125, 2014	BibTeX DOI
Kirankumar Hiremath, Lin Zschiedrich, Sven Burger, Frank Schmidt	Finite elements based numerical solution of nonlocal hydrodynamic Drude model of nano-plasmonic scatterers	12th International Conference on Fiber Optics and Photonics, p. M3D.4, OSA Technical Digest, 2014	BibTeX DOI
Marcus Weber, Christian Zoschke, Amir Sedighi, Emanuel Fleige, Rainer Haag, Monika Schäfer-Korting	Free Energy Simulations of Drug loading for Core-Multishell Nanotransporters	J Nanomed Nanotechnol, 5(5), p. 234, 2014	BibTeX DOI
Jacek Tyminski, Jan Pomplun, Stephen P. Renwick	Impact of topographic mask models on scanner matching solutions	Proc. SPIE: Optical Microlithography XXVII, p. 905218, Vol.9052, 2014	BibTeX DOI
Matthias Günther	Implementation and verification of methods for the validation of knee joint kinematics	Master's thesis, Freie Universität Berlin, Susanna Röblitz (Advisor), 2014	BibTeX
Simon Kirner, Martin Hammerschmidt, Christoph Schwanke, Daniel Lockau, Sonya Calnan, Tim Frijnts, Sebastian Neubert, Andreas Schöpke, Frank Schmidt, Jens-Hendrik Zollondz, Andreas Heidelberg, Bernd Stannowski, Bernd Rech, Rutger Schlatmann	Implications of TCO Topography on Intermediate Reflector Design for a-Si/μc-Si Tandem Solar Cells — Experiments and Rigorous Optical Simulations	IEEE Journal of Photovoltaics, 4(1), pp. 10-15, 2014	BibTeX DOI
Benjamin Wohlfeil, Christos Stamatiadis, Matthias Jäger, Lars Zimmermann, Sven Burger, Klaus Petermann	Integrated optical fiber grating coupler on SOI for the excitation of several higher order fiber modes	Optical Communication (ECOC), 2014 European Conference on, pp. 1-3, 2014	BibTeX DOI
Karsten Andrae, Stefan Merkel, Vedat Durmaz, Konstantin Fackeldey, Robert Köppen, Marcus Weber, Matthias Koch	Investigation of the Ergopeptide Epimerization Process	Computation, 2(3), pp. 102-111, 2014	BibTeX DOI
Peter Deuflhard, Christof Schütte	Life Sciences	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 1-5, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014	BibTeX
Konstantin Fackeldey, Alexander Bujotzek	Local Quantum-Like Updates in Classical Molecular Simulation Realized Within an Uncoupling-Coupling Approach	Progress in Industrial Mathematics at ECMI 2012, pp. 309-313, Vol.19, Mathematics in Industry, 2014	BibTeX DOI
Marcus Weber, Konstantin Fackeldey	Local Refinements in Classical Molecular Dynamics Simulations	J. Phys. Conf. Ser., Vol.490, p. 012016, 2014	PDF BibTeX
Sebastian Götschel, Chamakuri Nagaiah, Karl Kunisch, Martin Weiser	Lossy Compression in Optimal Control of Cardiac Defibrillation	J. Sci. Comput., 60(1), pp. 35-59, 2014 (preprint available as ZIB-Report 13-26)	PDF (ZIB-Report) BibTeX DOI
	MATHEON - Mathematics for Key Technologies	Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014, ISBN: 978-3-03719-137-8	BibTeX DOI
Stefanie Winkelmann, Christof Schütte, Max von Kleist	Markov Control Processes with Rare State Observation: Theory and Application to Treatment Scheduling in HIV-1	Communications in Mathematical Sciences, 12(5), pp. 859-877, 2014 (preprint available as ZIB-Report 13-34)	PDF (ZIB-Report) BibTeX DOI
Marco Sarich, Christof Schütte	Markov Model Theory	An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation, Vol.797, pp. 23-44, Gregory R. Bowman, Vijay S. Pande, Frank Noé (Eds.), Springer, 2014	BibTeX DOI
Peter Deuflhard, Ralf Kornhuber, Oliver Sander, Anton Schiela, Martin Weiser	Mathematics cures virtual patients	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 7-25, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014	BibTeX
Peter Deuflhard, Marcus Weber	Mathematics without pain	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 26-28, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014	BibTeX DOI
Jane Knöchel	Mathematische Modellierung metabolischer Einflussfaktoren auf den Milchkuhzyklus	Master's thesis, Humboldt-Universität zu Berlin, Susanna Röblitz, Caren Tischendorf (Advisors), 2014	PDF BibTeX URN
Pooja Gupta, Carola Krause, Paul Rikeit, Susanna Röblitz, Petra Knaus, Christof Schütte	Modeling of the BMP mediated co-regulation of the Smad and Non-Smad pathways in the context of cell density	10th International BMP conference, 2014, Berlin, Germany, 2014	BibTeX
Marco Sarich, Natasa Djurdjevac Conrad, Sharon Bruckner, Tim Conrad, Christof Schütte	Modularity revisited: A novel dynamics-based concept for decomposing complex networks	Journal of Computational Dynamics, 1(1), pp. 191-212, 2014	PDF BibTeX DOI
Ralf Banisch, Christof Schütte, Natasa Djurdjevac Conrad	Module Detection in Directed Real-World Networks	ZIB-Report 14-13	PDF BibTeX URN
	Molecular Dynamics Simulation	Giovanni Ciccotti, Mauro Ferrario, Christof Schütte (Eds.), Multidisciplinary Digital Publishing Institute (MDPI), 2014	BibTeX
Martina Schmid, Phillip Manley	Nano- and microlenses as concepts for enhanced performance of solar cells	J. Photon. Energy, Vol.5, p. 057003, 2014	BibTeX DOI
Shalva Amiranashvili, Uwe Bandelow, Mark Blome, Sven Burger, Frank Schmidt, Kersten Schmidt, Lin Zschiedrich	Nanophotonics and nonlinear fiber optics	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 257-275, Peter Deuflhard, et al. (Eds.), European Mathematical Society, 2014	BibTeX DOI
Andrei Lavrinenko, Jesper Laegsgaard, Niels Gregersen, Frank Schmidt, Thomas Soendergaard	Numerical Methods in Photonics	James C. Wyant (Ed.), CRC Press, 2014, ISBN: 9781466563889	BibTeX
Benjamin Wohlfeil, Sven Burger, Christos Stamatiadis, Jan Pomplun, Frank Schmidt, Lars Zimmermann, Klaus Petermann	Numerical Simulation of Grating Couplers for Mode Multiplexed Systems	Proc. SPIE, p. 89880K, Vol.8988, 2014	BibTeX DOI arXiv
Claudia Stötzel	Numerical and Discrete Modeling of Reproductive Endocrinological Networks	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2014	PDF BibTeX
Samuel Wiesendanger, Thomas Bischoff, Vladislav Jovanov, Dietmar Knipp, Sven Burger, Falk Lederer, Carsten Rockstuhl	Numerical investigations on the effects of film growth modes on light trapping in silicon thin film solar cells	Light, Energy and the Environment, p. PF4C.4, 2014	BibTeX DOI
Martin Hammerschmidt, Daniel Lockau, Lin Zschiedrich, Frank Schmidt	Optical modelling of incoherent substrate light-trapping in silicon thin film multi-junction solar cells with finite elements and domain decomposition	Proc. SPIE: Physics and Simulation of Optoelectronic Devices XXII, p. 898007, Vol.8980, 2014 (preprint available as ZIB-Report 14-21)	PDF (ZIB-Report) BibTeX DOI
Daniel Lockau, Martin Hammerschmidt, Mark Blome, Frank Schmidt	Optics of thin film solar cells	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 278-279, Peter Deuflhard, et al. (Eds.), European Mathematical Society, 2014	BibTeX DOI
Dany Pascal Moualeu-Ngangue, Samuel Bowong, Jürgen Kurths	Parameter Estimation of a Tuberculosis Model in a Patchy Environment: Case of Cameroon	BIOMAT - Proceedings of the 12th International Symposium on Mathematical and Computational Biology, Toronto, 2013, 2014	BibTeX DOI
Toni Mancini, Ivano Salvo, Federico Mari, Igor Melatti, Annalisa Massini, Stefano Sinisi, Enrico Tronci, Francesco Davi, Thomas Dierkes, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille	Patient-Specific Models from Inter-Patient Biological Models and Clinical Records	Proceedings of the 14th Conference on Formal Methods in Computer-Aided Design (FMCAD 2014), pp. 207-214, 2014	BibTeX
Martina Schmid, Patrick Andrae, Phillip Manley	Plasmonic and photonic scattering and near fields of nanoparticles	Nanoscale Research Letters, Vol.9, p. 50, 2014	BibTeX DOI
Olga Scharkoi, Susanne Esslinger, Roland Becker, Marcus Weber, Irene Nehls	Predicting sites of cytochrome P450-mediated hydroxylation applied to CYP3A4 and hexabromocyclododecane	Molecular Simulation, 2014	BibTeX DOI
Iliusi Vega, Christof Schütte, Tim Conrad	SAIMeR: Self-adapted method for the identification of metastable states in real-world time series	ZIB-Report 14-16	PDF BibTeX URN
Christof Schütte, Tim Conrad	Showcase 3: Information-based medicine	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 66-67, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014	BibTeX
Lin Zschiedrich, Therese Blome, Horst Greiner	Simulation of advanced OLED light extraction structures with novel FEM methods	Organic Photonics VI, p. 91370O, Vol.9137, Proc. SPIE, 2014	BibTeX DOI
Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Gunther Steinle, Nikolay Ledentsov, Jr., Sven Burger, Frank Schmidt	Single-Mode Vertical Cavity Surface Emitting Laser via Oxide-Aperture-Engineering of Leakage of High Order Transverse Modes	IEEE J. Quant. Electron., 50(12), pp. 990-995, 2014	BibTeX DOI
Johannes Kaschke, Mark Blome, Sven Burger, Martin Wegener	Tapered N-helical metamaterials with three-fold rotational symmetry as improved circular polarizers	Opt. Expr., 22(17), pp. 19936-19946, 2014	BibTeX DOI
Christoph Menzel, Erik Hebestreit, Stefan Mühlig, Carsten Rockstuhl, Sven Burger, Falk Lederer, Thomas Pertsch	The spectral shift between near- and far-field resonances of optical nano-antennas	Opt. Expr., 22(8), pp. 9971-9982, 2014	BibTeX DOI
Philippe Moewis, Heide Boeth, Markus O. Heller, Caroline Yntema, Tobias Jung, Ralf Doyscher, Rainald Ehrig, Yanlin Zhong, William R. Taylor	Towards understanding knee joint laxity: Errors in non-invasive assessment of joint rotation can be corrected	Medical Engineering and Physics, 36(7), pp. 889-895, 2014	BibTeX DOI
Charlotte Tumescheit	Using Birkhoff-von Neumann und Sinkhorn Algorithm to Find Dominating Cycles	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2014	BibTeX
Alexander Bujotzek, Ole Schütt, Adam Nielsen, Konstantin Fackeldey, Marcus Weber	ZIBgridfree: Efficient Conformational Analysis by Partition-of-Unity Coupling	Journal of Mathematical Chemistry, 52(3), pp. 781-804, 2014 (preprint available as ZIB-Report 13-58)	PDF (ZIB-Report) BibTeX DOI
2013
Julia Skibina, Martin Bock, Dorit Fischer, Rüdiger Grunwald, Günter Steinmeyer, Reiner Wedell, Mario Bretschneider, Sven Burger, Valentin Beloglazov	10-fs fiber based pulse delivery	Conference on Lasers, Applications, and Technologies (LAT), p. LWF5, 2013	BibTeX
Dany Pascal Moualeu-Ngangue	A Mathematical Tuberculosis Model in Cameroon	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2013	BibTeX URN
Han Cheng Lie, Konstantin Fackeldey, Marcus Weber	A Square Root Approximation of Transition Rates for a Markov State Model	SIAM. J. Matrix Anal. Appl., 34(2), pp. 738-756, 2013 (preprint available as ZIB-Report 13-43)	PDF (ZIB-Report) BibTeX DOI
Vedat Durmaz, Sebastian Schmidt, Peggy Sabri, Christian Piechotta, Marcus Weber	A hands-off linear interaction energy approach to binding mode and affinity estimation of estrogens	Journal of Chemical Information and Modeling, 53(10), pp. 2681-2688, 2013	PDF BibTeX
Susanna Röblitz, Claudia Stötzel, Peter Deuflhard, Hannah M. Jones, David-Olivier Azulay, Piet van der Graaf, Steven Martin	A mathematical model of the human menstrual cycle for the administration of GnRH analogues	Journal of Theoretical Biology, Vol.321, pp. 8-27, 2013 (preprint available as ZIB-Report 11-16)	PDF (ZIB-Report) BibTeX DOI
Marta Enciso, Christof Schütte, Luigi Delle Site	A pH-dependent coarse-grained model for peptides	Soft Matter, 9(26), pp. 6118-6127, 2013	BibTeX DOI
Pooja Gupta, Norbert Reinsch, Andreas Spötter, Tim Conrad, Kaspar Bienefeld	Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera)	BMC Genetics, 14(36), 2013	BibTeX DOI
Marcus Weber	Adaptive Spectral Clustering in Molecular Simulation. In: Studies in Classification, Data Analysis, and Knowledge Organization	XIV: Classification and Data Mining, A. Giusti, G. Ritter, M. Vichi (Eds.), Springer Series, pp. 147-157, 2013	BibTeX
Fiete Haack, Konstantin Fackeldey, Susanna Röblitz, Olga Scharkoi, Marcus Weber, Burkhard Schmidt	Adaptive spectral clustering with application to tripeptide conformation analysis	The Journal of Chemical Physics, Vol.139, pp. 110-194, 2013	BibTeX DOI
Sven Burger, Lin Zschiedrich, Jan Pomplun, Mark Blome, Frank Schmidt	Advanced finite-element methods for design and analysis of nano-optical structures: Applications	Proc. SPIE, Vol.8642, p. 864205, 2013	BibTeX DOI arXiv
Veit Preidel, Daniel Lockau, Tobias Sontheimer, Franziska Back, Eveline Rudigier-Voigt, Bernd Rech, Christiane Becker	Analysis of absorption enhancement in tailor-made periodic polycrystalline silicon microarrays	physica status solidi (RRL)-Rapid Research Letters, 7(12), pp. 1045-1049, 2013	BibTeX DOI
Florian Paulus, Maximilian Weiss, Dirk Steinhilber, Anatoly Nikitin, Christof Schütte, Rainer Haag	Anionic Ring-Opening Polymerization Simulations for Hyperbranched Polyglycerols with Defined Molecular Weights	Macromolecules, 46(21), pp. 8458-8466, 2013	BibTeX DOI
Heide Boeth, Georg N. Duda, Markus O. Heller, Rainald Ehrig, Ralf Doyscher, Tobias Jung, Philippe Moewis, Sven Scheffler, William R. Taylor	Anterior cruciate ligament-deficient patients with passive knee joint laxity have a decreased range of anterior-posterior motion during active movements	The American Journal of Sports Medicine, 41(5), pp. 1051-7, 2013	BibTeX DOI
Carsten Hartmann, Ralf Banisch, Marco Sarich, Thomas Badowski, Christof Schütte	Characterization of Rare Events in Molecular Dynamics	Entropy (Special Issue), 16(1), pp. 350-376, 2013 (preprint available as ZIB-Report 13-51)	PDF (ZIB-Report) BibTeX DOI
Remi Toudic	Confjump: A method for biomolecular sampling	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2013	BibTeX
Olga Scharkoi, Konstantin Fackeldey, Igor Merkulow, Karsten Andrae, Marcus Weber, Irene Nehls	Conformational Analysis of Alternariol on the Quantum Level	J. Mol. Model., 19(6), pp. 2567-2572, 2013	BibTeX DOI
Tobias Sontheimer, Veit Preidel, Daniel Lockau, Franziska Back, Eveline Rudigier-Voigt, Bernd Löchel, Alexei Erko, Frank Schmidt, Alexander Schnegg, Klaus Lips, Christiane Becker, Bernd Rech	Correlation between structural and opto-electronic characteristics of crystalline Si microhole arrays for photonic light management	Journal of Applied Physics, 114(17), p. 173513, 2013	BibTeX DOI
Günter Kewes, Andreas W. Schell, Rico Henze, Rolf S. Schonfeld, Sven Burger, Kurt Busch, Oliver Benson	Design and numerical optimization of an easy-to-fabricate photon-to-plasmon coupler for quantum plasmonics	Applied Physics Letters, Vol.102, p. 051104, 2013	BibTeX DOI
Cristina Arellano, Sergei F. Mingaleev, Igor Koltchanov, Andre Richter, Jan Pomplun, Sven Burger, Frank Schmidt	Efficient design of photonic integrated circuits (PICs) by combining device- and circuit- level simulation tools	Proc. SPIE, Vol.8627, p. 862711, 2013	BibTeX DOI
Martin Hammerschmidt, Daniel Lockau, Sven Burger, Frank Schmidt, Christoph Schwanke, Simon Kirner, Sonya Calnan, Bernd Stannowski, Bernd Rech	FEM-based optical modeling of silicon thin-film tandem solar cells with randomly textured interfaces in 3D	Proc. SPIE, Vol.8620, p. 86201H, 2013	BibTeX DOI
Sebastian Götschel, Martin Weiser, Christiane Maierhofer, Regina Richter, Mathias Röllig	Fast Defect Shape Reconstruction Based on the Travel Time in Pulse Thermography	Nondestructive Testing of Materials and Structures, Vol.6, pp. 83-89, 2013	BibTeX
Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt, Bernd Bodermann	Fast simulation method for parameter reconstruction in optical metrology	Proc. SPIE, Vol.8681, p. 868119, 2013	BibTeX DOI arXiv
Christoph Stein, Marcus Weber, Christian Zöllner, Olga Scharkoi	Fentanyl derivatives as pH-dependent opioid receptor agonists	European Patent Application, Bulletin 2013/08, 2013	PDF BibTeX
Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt	Finite-element based electromagnetic field simulations: Benchmark results for isolated structures	Proc. SPIE, p. 88801Z, Vol.8880, 2013	BibTeX DOI arXiv
Andreas Günther, Hans Lamecker, Martin Weiser	Flexible Shape Matching with Finite Element Based LDDMM	International Journal of Computer Vision, 105(2), pp. 128-143, 2013 (preprint available as ZIB-Report 11-22)	PDF (ZIB-Report) BibTeX DOI
Susanna Röblitz, Marcus Weber	Fuzzy spectral clustering by PCCA+: application to Markov state models and data classification	Advances in Data Analysis and Classification, 7(2), pp. 147-179, 2013	BibTeX DOI
Han Wang, Carsten Hartmann, Christof Schütte, Luigi Delle Site	Grand-canonical-like molecular-dynamics simulations by using an adaptive-resolution technique	Phys. Rev. X, Vol.3, p. 011018, 2013	BibTeX DOI
Barbara Rath, Kaveh Yousef, D. Katzenstein, R. Shafer, Christof Schütte, Max von Kleist, T. Merigan	HIV-1 Evolution in Response to Triple Reverse Transcriptase Inhibitor Induced Selective Pressure in vitro	PLoS ONE, 8(4), 2013	BibTeX DOI
Felix Lehmann	Inexaktheit in Newton-Lagrange-Verfahren für Optimierungsprobleme mit Elliptischen PDGL-Nebenbedingungen	Master's thesis, Freie Universität Berlin, Martin Weiser (Advisor), 2013 (preprint available as ZIB-Report 13-37)	PDF (ZIB-Report) BibTeX
Stephan Aiche	Inferring Proteolytic Processes from Mass Spectrometry Time Series Data	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013	BibTeX
Pooja Gupta	Integrating high-density marker information into the genetic evaluation of the honey bee	Doctoral thesis, Freie Universität Berlin, Christof Schütte, Kaspar Bienefeld (Advisors), 2013	BibTeX
Pooja Gupta	Integrating high-density marker information into the genetic evaluation of the honey bee	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013	BibTeX
Poul-Erik Hansen, Sven Burger	Investigation of microstructured fiber geometries by scatterometry	Proc. SPIE, Vol.8789, p. 87890R, 2013	BibTeX DOI
Rahul Tyagi, Shashwat Malhotra, Andreas F. Thünemann, Amir Sedighi, Marcus Weber, Andreas Schäfer, Rainer Haag	Investigations of Host-Guest Interactions with Shape-persistent Nonionic Dendritic Micelles	J. Phys. Chem. C, 117(23), pp. 12307-12317, 2013	BibTeX
Daniel Pommer	Konditionsverbesserung von Markov-Modellen	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2013	BibTeX
Phillip Manley, Frank Schmidt, Martina Schmid	Light extraction from plasmonic particles with dielectric shells and overcoatings	Renewable Energy and the Environment, p. PW3B.7, 2013	BibTeX DOI
Han Wang, Carsten Hartmann, Christof Schütte	Linear response theory and optimal control for a molecular system under nonequilibrium conditions	Molecular Physics, Vol.111, pp. 3555-3564, 2013 (preprint available as ZIB-Report 13-33)	PDF (ZIB-Report) BibTeX DOI
Stefanie Winkelmann, Christof Schütte, Max von Kleist	Markov Control Processes with Rare State Observation: Sensitivity Analysis with Respect to Optimal Treatment Strategies against HIV-1	International Journal of Biomathematics and Biostatistics, 2(1), 2013	BibTeX
Stefanie Winkelmann	Markov Decision Processes with Information Costs	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013	BibTeX
Marco Sarich, Ralf Banisch, Carsten Hartmann, Christof Schütte	Markov State Models for Rare Events in Molecular Dynamics	Entropy (Special Issue), 16(1), pp. 258-286, 2013 (preprint available as ZIB-Report 13-52)	PDF (ZIB-Report) BibTeX DOI
Pooja Gupta, Susanna Röblitz, Carola Krause, Petra Knaus, Christof Schütte	Mathematical modeling of the Smad and Non-Smad BMP signaling pathways in context of cell density	Computational Models in biology and medicine, 2013, Dresden, Germany, 2013	BibTeX
Karsten Andrae, Vedat Durmaz, Konstantin Fackeldey, Olga Scharkoi, Marcus Weber	Medizin aus dem Computer	Der Anaesthesist, 62(7), pp. 561-557, 2013	BibTeX DOI
Christof Schütte, Marco Sarich	Metastability and Markov State Models in Molecular Dynamics: Modeling, Analysis, Algorithmic Approaches	American Mathematical Society, 2013	BibTeX
Christoph Stein, Marcus Weber, Olga Scharkoi, Peter Deuflhard	Method and system for identifying compounds that bind and preferably activate a target opioid receptor in a pH-dependent manner	European Patent Application, Bulletin 2013/28, 2013	PDF BibTeX
B. A. Nikitin, Michael Wulkow, Christof Schütte	Modeling of Free Radical Styrene/Divinylbenzene Copolymerization with the Numerical Fractionation Technique	Macromolecular Theory and Simulation, 22(9), pp. 475-489, 2013	BibTeX DOI
Julia Plöntzke, Mascha Berg, Amiya Olany, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz	Modeling potassium balance in dairy cows	ZIB-Report 13-09	PDF BibTeX URN
Alexander Bujotzek	Molecular Simulation of Multivalent Ligand-Receptor Systems	Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2013	BibTeX
Daniel Lockau, Tobias Sontheimer, Christiane Becker, Eveline Rudigier-Voigt, Frank Schmidt, Bernd Rech	Nanophotonic light trapping in 3-dimensional thin-film silicon architectures	Opt. Express, Vol.21, p. A42, 2013	BibTeX DOI
Christiane Becker, Jolly Xavier, Veit Preidel, Philippe Wyss, Tobias Sontheimer, Bernd Rech, Jürgen Probst, Christoph Hülsen, Bernd Löchel, Alexei Erko, Sven Burger, Frank Schmidt, Franziska Back, Eveline Rudigier-Voigt	Nanophotonic light trapping in polycrystalline silicon thin-film solar cells using periodically nanoimprint-structured glass substrates	Proc. SPIE, p. 88240D, Vol.8824, 2013	BibTeX DOI
Martin Bock, Julia Skibina, Dorit Fischer, Mario Bretschneider, Reiner Wedell, Rüdiger Grunwald, Sven Burger, Valentin Beloglazov, Günter Steinmeyer	Nanostructured fibers for sub-10 fs optical pulse delivery	Laser & Photonics Reviews, Vol.7, pp. 566-570, 2013	BibTeX DOI
Min Shan, Kathryn E. Carlson, Alexander Bujotzek, Anja Wellner, Ronald Gust, Marcus Weber, John A. Katzenellenbogen, Rainer Haag	Nonsteroidal Bivalent Estrogen Ligands - An Application of the Bivalent Concept to the Estrogen Receptor	ACS Chem. Biol., 8(4), pp. 707-715, 2013	PDF BibTeX
Jo Andrea Brüggemann	Numerical Modelling of the human menstrual cycle applied to ovulation prediction	Master's thesis, Universität Trier, Susanna Röblitz (Advisor), 2013	PDF BibTeX URN
Lin Zschiedrich, Horst Greiner, Sven Burger, Frank Schmidt	Numerical analysis of nanostructures for enhanced light extraction from OLEDs	Proc. SPIE, Vol.8641, p. 86410B, 2013	BibTeX DOI arXiv
Johannes Endres, Sven Burger, Matthias Wurm, Bernd Bodermann	Numerical investigations of the influence of different commonly applied approximations in scatterometry	Proc. SPIE, Vol.8789, p. 878904, 2013	BibTeX DOI
Adam Nielsen, Konstantin Fackeldey, Marcus Weber	On a Generalized Transfer Operator	ZIB-Report 13-74	PDF BibTeX URN
Martin Weiser	On goal-oriented adaptivity for elliptic optimal control problems	Opt. Meth. Softw., 28(13), pp. 969-992, 2013 (preprint available as ZIB-Report 09-08)	PDF (ZIB-Report) BibTeX
Daniel Lockau	Optical modeling of thin film silicon solar cells with random and periodic light management textures	Doctoral thesis, Technische Universität Berlin, Bernd Rech (Advisor), 2013	BibTeX URN
Daniel Lockau, Tobias Sontheimer, Veit Preidel, Christiane Becker, Florian Ruske, Frank Schmidt, Bernd Rech	Optical properties and Limits of a Large-Area Periodic Nanophotonic Light Trapping Design for Polycrystalline Silicon Thin Film Solar Cells	MRS Proceedings, Vol.1493, pp. 59-64, 2013	BibTeX DOI
Thomas Dierkes, Susanna Röblitz, Moritz Wade, Peter Deuflhard	Parameter identification in large kinetic networks with BioPARKIN	CoRR - Computing Research Repository - arXiv.org, Vol.abs/1303.4928, 2013	PDF BibTeX
Christiane Becker, Daniel Amkreutz, Tobias Sontheimer, Veit Preidel, Daniel Lockau, Jan Haschke, Lisa Jogschies, Carola Klimm, Janis J. Merkel, Paul Plocica, Simon Steffens, Bernd Rech	Polycrystalline silicon thin-film solar cells: Status and perspectives	Solar Energy Materials and Solar Cells, Vol.119, pp. 112-123, 2013	BibTeX DOI
Sebastian Götschel, Christoph von Tycowicz, Konrad Polthier, Martin Weiser	Reducing Memory Requirements in Scientific Computing and Optimal Control	ZIB-Report 13-64 (submitted to "Multiple Shooting and Time Domain Decomposition Methods", Springer Series "Contributions in Mathematical and Computational Sciences")	PDF BibTeX URN
Victor Soltwisch, Sven Burger, Frank Scholze	Scatterometry sensitivity analysis for conical diffraction versus in-plane diffraction geometry with respect to the side wall angle	Proc. SPIE, Vol.8789, p. 878905, 2013	BibTeX DOI
Bjorn Maes, Jiří Petráček, Sven Burger, Pavel Kwiecien, Jaroslav Luksch, Ivan Richter	Simulations of high-Q optical nanocavities with a gradual 1D bandgap	Opt. Express, Vol.21, pp. 6794-6806, 2013	BibTeX DOI
Jessica Schmiedel	Singulärwertzerlegung mit Zufallsalgorithmen	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2013	BibTeX
Kaveh Yousef	Stress responses in Escherichia coli and HIV as model systems of adaptation to the environment	Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013	BibTeX
Jacek Tyminski, Jan Pomplun, Lin Zschiedrich, Donis Flagello, Tomiyuki Matsuyama	Topographic mask modeling with reduced basis finite element method	Proc. SPIE, Vol.8683, p. 86831C, 2013	BibTeX DOI
Christoph Menzel, Erik Hebestreit, Stefan Mühlig, Sven Burger, Carsten Rockstuhl, Falk Lederer, Thomas Pertsch	Towards homogeneous magnetic metamaterials - a comprehensive multipole analysis	Proc. META'13, Said Zouhdi, Hamid Al-Naimiy (Eds.), pp. 502-503, 2013, ISBN: 978-2-9545460-0-1	BibTeX
Daniel Ruprecht, Achim Schädle, Frank Schmidt	Transparent boundary conditions based on the pole condition for time-dependent, two-dimensional problems	Numerical Methods for Partial Differential Equations, 29(4), pp. 1367-1390, 2013	BibTeX DOI
Marta Enciso, Christof Schütte, Luigi Delle Site	pH-dependent Response of Coiled Coils: A Coarse-Grained Molecular Simulation Study	Molecular Physics, 111(22-23), pp. 3363-3371, 2013	BibTeX DOI
2012
Martin Bock, Julia Skibina, Dorit Fischer, Rüdiger Grunwald, Sven Burger, Valentin Beloglazov, Günter Steinmeyer	10-fs pulse delivery through a fiber	CLEO, p. CTh3G.3, 2012	BibTeX DOI
A. Plattner, H. Maurer, J. Vorloeper, Mark Blome	3-D electrical resistivity tomography using adaptive wavelet parameter grids	Geophysical Journal International, Vol.189, pp. 317-330, 2012	BibTeX
Maria Rozova, Jan Pomplun, Lin Zschiedrich, Frank Schmidt, Sven Burger	3D finite element simulation of optical modes in VCSELs	Proc. SPIE, p. 82550K, Vol.8255, 2012	BibTeX DOI arXiv
Martin Hammerschmidt, Daniel Lockau, Sven Burger, Frank Schmidt, Christoph Schwanke, Simon Kirner, Sonya Calnan, Bernd Stannowski, Bernd Rech	3D optical modeling of thin-film a-Si/mc-Si tandem solar cells with random textured interfaces using FEM	Renewable Energy and the Environment Optics and Photonics Congress, p. JM5A.15, 2012	BibTeX DOI
Konstantin Fackeldey, Martina Klimm, Marcus Weber	A Coarse Graining Method for the Dimension Reduction of the State Space of Biomolecules	Journal of Mathematical Chemistry, 5(9), pp. 2623-2635, 2012	BibTeX
Han Cheng Lie	A Meshless Method for Conformational Analysis	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012	BibTeX
Anton Schiela	A cubic regularization algorithm for nonconvex optimization in function space (in preparation)	ZIB-Report 12-16	BibTeX
H. Marike T. Boer, Claudia Stötzel, Susanna Röblitz, Henri Woelders	A differential equation model to investigate the dynamics of the bovine estrous cycle	Advances in Systems Biology, pp. 597-606, 2012	BibTeX DOI
Konstantin Fackeldey, Alexander Bujotzek, Marcus Weber	A meshless discretization method for Markov state models applied to explicit water peptide folding simulations	Meshfree Methods for Partial Differential Equations VI, pp. 141-154, Vol.89, Lecture Notes in Computational Science and Engineering, 2012	BibTeX
Corinna Klapproth	Adaptive numerical integration for dynamical contact problems	Doctoral thesis, Freie Universität Berlin, 2012	BibTeX
Peter Deuflhard, Martin Weiser	Adaptive numerical solution of PDEs	de Gruyter: Berlin, 2012	BibTeX
Claudia Stötzel, Julia Plöntzke, Wolfgang Heuwieser, Susanna Röblitz	Advances in modelling of the bovine estrous cycle: Synchronization with PGF2alpha	Theriogenology, Vol.78, pp. 1415-1428, 2012 (preprint available as ZIB-Report 11-17)	PDF (ZIB-Report) BibTeX DOI
Akiko Kato, Sven Burger, Frank Scholze	Analytical modeling and 3D finite element simulation of line edge roughness in scatterometry	Appl. Optics, Vol.51, pp. 6457-6464, 2012	BibTeX DOI arXiv
Mark Daniel Riesland	Anwendbarkeit von Thermostaten in der moleküldynamischen Simulation	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012	BibTeX
H. Marike T. Boer, Mochamad Apri, Jaap Molenaar, Claudia Stötzel, Roel F. Veerkamp, Henri Woelders	Candidate mechanisms underlying atypical progesterone profiles as deduced from parameter perturbations in a mathematical model of the bovine estrous cycle	Journal of Dairy Science, 95(7), pp. 3837-3851, 2012	BibTeX DOI
Felix Schlosser, Mario Schoth, Sven Burger, Frank Schmidt, Andreas Knorr, Shaul Mukamel, Marten Richter	Coherent Nonlinear Spectroscopy with Spatiotemporally Controlled Fields	CLEO/QELS, p. QF3D.6, 2012	BibTeX DOI
Felix Schlosser, Mario Schoth, Kirankumar Hiremath, Sven Burger, Frank Schmidt, Andreas Knorr, Shaul Mukamel, Marten Richter	Combining nanooptical fields and coherent spectroscopy on systems with delocalized excitons	Proc. SPIE, p. 82601V, Vol.8260, 2012	BibTeX DOI
J.G. Ochoa, Michael Wulkow	DNA damages as a Depolymerization Process	International Journal of Modern Physics C, 23(03), pp. 1250018-1, 2012	BibTeX
Sebastian Götschel, Martin Weiser, Christiane Maierhofer, Regina Richter	Data Enhancement for Active Thermography	E-book Proceedings, 11th International Conference on Quantitative Infrared Thermography, Naples, Gennaro Cardone (Ed.), 2012 (preprint available as ZIB-Report 12-20)	PDF PDF (ZIB-Report) BibTeX
Benjamin Kettner	Detection of spurious modes in resonance mode computations	Doctoral thesis, Freie Universität Berlin, Frank Schmidt (Advisor), 2012	BibTeX URN
Andreas Spötter, Pooja Gupta, Nürnberg, Norbert Reinsch, Kaspar Bienefeld	Development of a 44K SNP assay focussing on the analysis of a varroa-specific defence behaviour in honey bees (Apis mellifera carnica)	12(2), pp. 323-332, 2012	BibTeX DOI
Stefan Kratzenstein, Evgenios I. Kornaropoulos, Rainald Ehrig, Markus O. Heller, Berry M. Pöpplau, William R. Taylor	Effective marker placement for functional identification of the centre of rotation at the hip	Gait & Posture, 36(3), pp. 482-486, 2012	BibTeX DOI
Lin Zschiedrich, Horst Greiner, Jan Pomplun, Martin Hammerschmidt, Sven Burger, Frank Schmidt	FEM simulations of light extraction from nanostructured organic light-emitting diodes	Renewable Energy and the Environment Optics and Photonics Congress, p. LT2B.5, 2012	BibTeX DOI
Sven Burger, Jan Pomplun, Frank Schmidt	Finite Element Methods for Computational Nano-optics	Encyclopedia of Nanotechnology, B. Bhushan (Ed.), Springer Netherlands, pp. 837-843, 2012	BibTeX DOI
Jacek Tyminski, Raluca Popescu, Sven Burger, Jan Pomplun, Lin Zschiedrich, Tomoyuki Matsuyama, Tomoya Noda	Finite element models of lithographic mask topography	Proc. SPIE, W. Conley (Ed.), p. 83261B, Vol.8326, 2012	BibTeX DOI
Bernd Bodermann, Poul-Erik Hansen, Sven Burger, Mark-Alexander Henn, Hermann Gross, Markus Bär, Frank Scholze, Johannes Endres, Matthias Wurm	First steps towards a scatterometry reference standard	Proc. SPIE, p. 84660E, Vol.8466, 2012	BibTeX DOI
Burcu Tunga, Marcus Weber	Free Energy Calculation Using Mayer Cluster Expansion and Fluctuation Free Integration	ZIB-Report 12-35	PDF BibTeX URN
Hong-Dan Yan, Peter Lemmens, Johannes Ahrens, Martin Bröring, Sven Burger, Winfried Daum, Gerhard Lilienkamp, Sandra Korte, Aidin Lak, Meinhard Schilling	High-density array of Au nanowires coupled by plasmon modes	Acta Phys. Sin., 61(23), p. 237105, 2012	BibTeX DOI
Vedat Durmaz, Marcus Weber, Roland Becker	How to Simulate Affinities for Host-Guest Systems Lacking Binding Mode Information: application to the liquid chromatographic separation of hexabromocyclododecane stereoisomers	Journal of Molecular Modeling, Vol.18, pp. 2399-2408, 2012	BibTeX DOI
Stephan Aiche, Knut Reinert, Christof Schütte, Diana Hildebrand, Hartmut Schlüter, Tim Conrad	Inferring Proteolytic Processes from Mass Spectrometry Time Series Data Using Degradation Graphs	PLoS ONE, 7(7), p. e40656, 2012	BibTeX DOI
Christiane Becker, Daniel Lockau, Tobias Sontheimer, Peter Schubert-Bischoff, Eveline Rudigier-Voigt, Matthias Bockmeyer, Frank Schmidt, Bernd Rech	Large-area 2D periodic crystalline silicon nanodome arrays on nanoimprinted glass exhibiting photonic band structure effects	Nanotechnology, 23(13), p. 135302, 2012	BibTeX DOI
Mascha Berg	Laufzeitoptimierung der Robusten Perron Cluster Analyse (PCCA+)	Master's thesis, Freie Universität Berlin, Susanna Röblitz, Marcus Weber (Advisors), 2012	PDF BibTeX
Tobias Sontheimer, Eveline Rudigier-Voigt, Matthias Bockmeyer, Daniel Lockau, Carola Klimm, Christiane Becker, Bernd Rech	Light harvesting architectures for electron beam evaporated solid phase crystallized Si thin film solar cells	Journal of Non-Crystalline Solids, 358(17), pp. 2303-2307, 2012	BibTeX DOI
Viktoriia E. Babicheva, Sergey S. Vergeles, Petr E. Vorobev, Sven Burger	Localized surface plasmon modes in a system of two interacting metallic cylinders	J. Opt. Soc. Am. B, 29(6), pp. 1263-1269, 2012	BibTeX DOI arXiv
Peter Deuflhard, Anton Schiela, Martin Weiser	Mathematical Cancer Therapy Planning in Deep Regional Hyperthermia	Acta Numerica, Vol.21, pp. 307-378, 2012 (preprint available as ZIB-Report 11-39)	PDF (ZIB-Report) BibTeX
Manon Bondouy, Susanna Röblitz	Mathematical modeling of follicular development in bovine estrous cycles	ZIB-Report 12-26	PDF BibTeX URN
Kristin Meisel	Mathematische Modellierung der Knochenremodellierung	Master's thesis, Hochschule Zittau/Görlitz, Susanna Röblitz (Advisor), 2012 (preprint available as ZIB-Report 13-41)	PDF (ZIB-Report) BibTeX
Peter Deuflhard, Stefan Zachow	Mathematische Therapie- und Operationsplanung	pp. 89-90, Berliner Wirtschaftsgespräche e.V.: Berlin, 2012	BibTeX
William R. Taylor, Annika Fröhlich, Frank Buttgereit, Rainald Ehrig, Tom Witaschek, Georg N. Duda	Metacarpophalangeal joint stiffness is reduced in patients affected by rheumatoid arthritis after glucocorticoid medication	Proceedings of the ESM-2012, Aalborg, Uwe Kersting, Michael Morlock, Daniela Jirova-Enzmann, Kim Dremstrup (Eds.), p. 39, 2012	BibTeX
Natasa Djurdjevac Conrad	Methods for analyzing complex networks using random walker	Doctoral thesis, Freie Universität Berlin, Christof Schütte, Wilhelm Huisinga (Advisors), 2012	BibTeX
Konstantin Fackeldey	Multiscale Methods in Time and Space	Progress in Industrial Mathematics at ECMI 2010, pp. 619-626, Vol.17, Mathematics in Industry, 2012	BibTeX
Carlo Fasting, Christoph A. Schalley, Marcus Weber, Oliver Seitz, Stefan Hecht, Beate Koksch, Jens Dernedde, Christina Graf, Ernst-Walter Knapp, Rainer Haag	Multivalency as a Chemical Organization and Action Principle	Angew. Chem. Int. Ed., 51(42), pp. 10472-10498, 2012	BibTeX
Kirankumar Hiremath, Lin Zschiedrich, Frank Schmidt	Numerical solution of nonlocal hydrodynamic Drude model for arbitrary shaped nano-plasmonic structures using Nedelec finite elements	J. Comp. Phys., 231(17), pp. 5890-5896, 2012	BibTeX DOI
Robert Köppen, Juliane Riedel, Matthias Proske, Sarah Drzymala, Tatjana Rasenko, Vedat Durmaz, Marcus Weber, Matthias Koch	Photochemical trans-/cis-isomerization and quantification of zearalenone in edible oils	J. Agric. Food Chem., Vol.60, pp. 11733-11740, 2012	BibTeX DOI
Marcus Weber, Alexander Bujotzek, Rainer Haag	Quantifying the rebinding effect in multivalent chemical ligand-receptor systems	J. Chem. Phys., 137(5), p. 054111, 2012	BibTeX
Natasa Djurdjevac Conrad, Stefanie Bruckner, Tim Conrad, Christof Schütte	Random Walks on Complex Modular Networks	Journal of Numerical Analysis, Industrial and Applied Mathematics, 6(1-2), pp. 29-50, 2012	BibTeX
Marten Richter, Felix Schlosser, Mario Schoth, Sven Burger, Frank Schmidt, Andreas Knorr, Shaul Mukamel	Reconstruction of the wave functions of coupled nanoscopic emitters using a coherent optical technique	Phys. Rev. B, Vol.86, p. 085308, 2012	BibTeX DOI arXiv
Pooja Gupta, Tim Conrad, Andreas Spötter, Norbert Reinsch, Kaspar Bienefeld	Simulating a base population in honey bee for molecular genetic studies	Genetics Selection Evolution, 2012	BibTeX DOI
Jiri Petracek, Bjorn Maes, Sven Burger, Jaroslav Luksch, Pavel Kwiecien, Ivan Richter	Simulation of high-Q nanocavities with 1D photonic gap	Transparent Optical Networks (ICTON), pp. 1-4, 2012	BibTeX DOI
Jiri Petracek, Jaroslav Luksch, Bjorn Maes, Sven Burger, Pavel Kwiecien, Ivan Richter	Simulation of photonic crystal nanocavities using a bidirectional eigenmode propagation algorithm: a comparative study	Micro- and nanophotonic materials and devices, M. Ferrari, M. Marciniak, G. Righini, T. Szoplik, S. Varas (Eds.), pp. 109-112, 2012, ISBN: 9788377980200	BibTeX
Sebastian Götschel, Martin Weiser, Anton Schiela	Solving Optimal Control Problems with the Kaskade 7 Finite Element Toolbox	Advances in DUNE, pp. 101-112, A. Dedner, B. Flemisch, R. Klöfkorn (Eds.), Springer, 2012 (preprint available as ZIB-Report 10-25)	PDF (ZIB-Report) BibTeX
Björn-Marcel Jeschke	Spezielle Eigenschaften von Simulated Annealing	Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012	BibTeX
Martin Weiser, Sebastian Götschel	State Trajectory Compression for Optimal Control with Parabolic PDEs	SIAM J. Sci. Comput., 34(1), pp. A161-A184, 2012 (preprint available as ZIB-Report 10-05)	PDF (ZIB-Report) BibTeX DOI
Corinna Klapproth	The Contact-Stabilized Newmark Method - Consistency Error of a Spatiotemporal Discretization	ZIB-Report 12-18	PDF BibTeX URN
Marcus Weber	The funnel trap paradox	ZIB-Report 12-12	PDF BibTeX URN
J. Katzer, W. Pauer, H.-U. Moritz, Michael Wulkow	Thermal polymerization of styrene Part B	Macromol. React. Eng, Vol.6, pp. 225-238, 2012	BibTeX
Jan Pomplun, Hans Wenzel, Sven Burger, Lin Zschiedrich, Maria Rozova, Frank Schmidt, Paul Crump, Hossein Ekhteraei, Christoph M. Schultz, Götz Erbert	Thermo-optical simulation of high-power diode lasers	Proc. SPIE, p. 825510, Vol.8255, 2012	BibTeX DOI
Oliver Sander, Corinna Klapproth, Jonathan Youett, Ralf Kornhuber, Peter Deuflhard	Towards an Efficient Numerical Simulation of Complex 3D Knee Joint Motion	ZIB-Report 12-06	PDF BibTeX URN
Adam Nielsen	Von Femtosekunden zu Minuten	Master's thesis, Freie Universität Berlin, 2012	PDF BibTeX
Jan-Martin Josten	Östrogenitäts-Approximation mittels physikochemischem Oberflächenvergleich	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012	BibTeX
2011
Marcus Weber	A Subspace Approach to Molecular Markov State Models via a New Infinitesimal Generator	Habilitation, Freie Universität Berlin, 2011	PDF PDF PDF BibTeX URN
Mascha Berg, Julia Ritter, Susanna Röblitz	A mathematical model for the Zinc response of young pigs	ZIB-Report 11-05	PDF BibTeX URN
Vedat Durmaz, Konstantin Fackeldey, Marcus Weber	A rapidly Mixing Monte Carlo Method for the Simulation of Slow Molecular Processes	Applications of Monte Carlo Methods in Biology, Medicine and Other Fields of Science, Ch. Mode (Ed.), InTech, 2011	BibTeX
H. Marike T. Boer, Claudia Stötzel, Susanna Röblitz, Peter Deuflhard, Roel F. Veerkamp, Henri Woelders	A simple mathematical model of the bovine estrous cycle	Journal of Theoretical Biology, 278(1), pp. 20-31, 2011 (preprint available as ZIB-Report 10-06)	PDF (ZIB-Report) BibTeX DOI
Anton Schiela, Andreas Günther	An Interior Point Algorithm with Inexact Step Computation in Function Space for State Constrained Optimal Control	Numer. Math., 119(2), pp. 373-407, 2011	BibTeX DOI
Thomas Dierkes, Moritz Wade, Ulrich Nowak, Susanna Röblitz	BioPARKIN - Biology-related Parameter Identification in Large Kinetic Networks	ZIB-Report 11-15	PDF BibTeX URN
Marcus Weber, Alexander Bujotzek, Karsten Andrae, M. Weinhart, Rainer Haag	Computational entropy estimation of linear polyether modified surfaces and correlation with protein resistant properties of such surfaces	J. Mol. Sim., 2011	BibTeX
Min Shan, Alexander Bujotzek, Frank Abendroth, Oliver Seitz, Marcus Weber, Rainer Haag	Conformational Analysis of Bivalent Estrogen Receptor-Ligands: From Intramolecular to Intermolecular Binding	ChemBioChem, 12(17), pp. 2587-2598, 2011	BibTeX DOI
Anton Schiela, Daniel Wachsmuth	Convergence Analysis of Smoothing Methods for Optimal Control of Stationary Variational Inequalities	ZIB-Report 11-23	PDF BibTeX URN
Konstantin Fackeldey	Coupling Meshbased and Meshfree Methods by a Transfer Operator Approach	IJPAM, 69(2), pp. 185-202, 2011 (preprint available as ZIB-Report 10-12)	PDF (ZIB-Report) BibTeX
Konstantin Fackeldey, Dorian Krause, Rolf Krause, Christoph Lenzen	Coupling Molecular Dynamics and Continua with Weak Constraints	SIAM Multiscale Model. Simul., Vol.9, pp. 1459-1494, 2011	BibTeX DOI
Frank Abendroth, Alexander Bujotzek, Min Shan, Rainer Haag, Marcus Weber, Oliver Seitz	DNA-controlled bivalent presentation of ligands for the estrogen receptor	Angew. Chem. Int. Ed., 2011	BibTeX
Ch. Scheibe, Alexander Bujotzek, Jens Dernedde, Marcus Weber, O. Seitz	DNA-programmed spatial screening of carbohydrate-lectin interactions	Chem. Sci., Vol.2, pp. 770-775, 2011	BibTeX
Andreas Günther, Hans Lamecker, Martin Weiser	Direct LDDMM of Discrete Currents with Adaptive Finite Elements	Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, pp. 1-14, X. Pennec, S. Joshi, M. Nielsen (Eds.), 2011 (preprint available as ZIB-Report 11-22)	PDF (ZIB-Report) BibTeX
Martina Klimm, Alexander Bujotzek, Marcus Weber	Direct Reweighting Strategies in Conformation Dynamics	MATCH Commun. Math. Comp. Chem., Vol.65(2), pp. 333-346, 2011	BibTeX
Michael Hinze, Anton Schiela	Discretization of Interior Point Methods for State Constrained Elliptic Optimal Control Problems: optimal error estimates and parameter adjustment	Comp. Opt. and Appl., 48(3), pp. 581-600, 2011 (preprint available as ZIB-Report 07-40)	PDF (ZIB-Report) BibTeX DOI
B. Kleemann, J. Kurz, J. Hetzler, Jan Pomplun, Sven Burger, Lin Zschiedrich, Frank Schmidt	Fast online inverse scattering with Reduced Basis Method (RBM) for a 3D phase grating with specific line roughness	Modelling Aspects in Optical Metrology III, p. 808309, Vol.8083, 2011	BibTeX DOI
Frank Schmidt, Jan Pomplun, Lin Zschiedrich, Sven Burger	Fast online simulation of 3D nanophotonic structures by the reduced basis method	Integrated Optics: Devices, Materials, and Technologies XV, p. 79410G, Vol.7941, 2011	BibTeX DOI
Jan Pomplun, Sven Burger, Maria Rozova, Lin Zschiedrich, Frank Schmidt	Finite element simulation of optical modes in VCSELs	Numerical Simulation of Optoelectronic Devices (NUSOD), 11th International Conference on, pp. 119-120, 2011	BibTeX DOI
Sven Burger, Jan Pomplun, Frank Schmidt, Lin Zschiedrich	Finite-element method simulations of high-Q nanocavities with 1D photonic bandgap	Physics and Simulation of Optoelectronic Devices XIX, p. 79330T, Vol.7933, 2011	BibTeX DOI
Mark Blome, HR Maurer, S. Greenhalgh	Geoelectric experimental design — Efficient acquisition and exploitation of complete pole-bipole data sets	GEOPHYSICS, 76(1), pp. F15-F26, 2011	BibTeX DOI
Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt, Akiko Kato, Christian Laubis, Frank Scholze	Investigation of 3D Patterns on EUV Masks by Means of Scatterometry and Comparison to Numerical Simulations	Photomask Technology 2011, p. 81661Q, Vol.8166, 2011	BibTeX DOI
Bernd Bodermann, Egbert Buhr, Hans-Ulrich Danzebrink, Markus Bär, Frank Scholze, Michael Krumrey, Matthias Wurm, Petr Klapetek, Poul-Erik Hansen, Virpi Korpelainen, Marijn van Veghel, Andrew Yacoot, Samuli Siitonen, Omar El Gawhary, Sven Burger, Toni Saastamoinen	Joint Research on Scatterometry and AFM Wafer Metrology	AIP Conference Proceedings, 1395(1), pp. 319-323, 2011	BibTeX DOI
J. Zhao, B. Frank, Sven Burger, H. Giessen	Large-Area High-Quality Plasmonic Oligomers Fabricated by Angle-Controlled Colloidal Nanolithography	ACS Nano, 5(11), p. 9009, 2011	BibTeX DOI
Y. Neve-Oz, T. Pollok, Sven Burger, M. Golosovsky, D. Davidov	Localized resonant states and transmission in a two- dimensional photonic quasicrystal	Proc. of the 5th International Conference on Applied Mathematics, Simulation, Modelling (ASM ’II), Corfu, 2011, N. Mastorakis (Ed.), pp. 178-182, Vol.1, 2011, ISBN: 978-1-61804-016-9	BibTeX
H. Marike T. Boer, Susanna Röblitz, Claudia Stötzel, Roel F. Veerkamp, Bas Kemp, Henri Woelders	Mechanisms regulating follicle wave patterns in the bovine estrous cycle investigated with a mathematical model	Journal of Dairy Science, 94(12), pp. 5987-6000, 2011	BibTeX DOI
Peter Deuflhard, Martin Weiser	Numerische Mathematik 3	de Gruyter, Berlin, 2011	BibTeX
Anton Schiela, Michael Hintermüller	On the Length of the Primal-Dual Path in Moreau-Yosida-based Path-following for State Constrained Optimal Control: Analysis and Numerics	ZIB-Report 11-37	PDF BibTeX URN
Lars Lubkoll	Optimal Control in Implant Shape Design	Master's thesis, Technische Universität Berlin, Fredi Tröltzsch (Advisor), 2011	BibTeX
O. Scharkoi, Susanne Esslinger, Roland Becker, Marcus Weber, Irene Nehls	Phase I oxidation of alpha- and gamma-hexabromocyclododecane by cytochrome P450 enzymes: simulation of the stereoisomerism of hydroxylated metabolites	Organohalogen Compounds, Vol.73, pp. 730-733, 2011	PDF BibTeX
Jan Pomplun, Sven Burger, Lin Zschiedrich, Frank Schmidt	Reduced basis method for real-time inverse scatterometry	Modelling Aspects in Optical Metrology III, p. 808308, Vol.8083, 2011	BibTeX DOI
D. Lockau, Lin Zschiedrich, Sven Burger, Frank Schmidt, F. Ruske, Bernd Rech	Rigorous optical simulation of light management in crystalline silicon thin film solar cells with rough interface textures	Physics and Simulation of Optoelectronic Devices XIX, p. 79330M, Vol.7933, 2011	BibTeX DOI
Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt	Rigorous simulations of 3D patterns on extreme ultraviolet lithography masks	Modelling Aspects in Optical Metrology III, Bernd Bodermann (Ed.), p. 80831B, Vol.8083, 2011	BibTeX DOI
Konstantin Fackeldey, Susanna Röblitz, O. Scharkoi, Marcus Weber	Soft Versus Hard Metastable Conformations in Molecular Simulations	Particle Methods II, Fundamentals and Applications, Barcelona, Spain 26-28 Oct. 2011, E. Onate and D.R.J. Owen (eds.), pp. 899-909, 2011 (preprint available as ZIB-Report 11-27)	PDF (ZIB-Report) BibTeX
G. Wong, M. Kang, H. Lee, Sven Burger, Lin Zschiedrich, F. Biancalana, P. Russell	Strongly Twisted Solid-Core PCF: A One-Dimensional Chiral Metamaterial	Frontiers in Optics, p. FMG3, 2011	BibTeX DOI
William R. Taylor, Evgenios I. Kornaropoulos, Stefan Kratzenstein, Rainald Ehrig, F. Plank, Markus O. Heller	Targeted Marker Placement for the Functional Identification of the Hip Joint Centre	Transactions Vol. 36, 2011 Annual Meeting of the Orthopedic Society, 2011	BibTeX
Rainald Ehrig, Markus O. Heller, Stefan Kratzenstein, Georg N. Duda, Adam Trepczynski, William R. Taylor	The SCoRE residual: A quality index to assess the accuracy of joint estimations	Journal of Biomechanics, 44(7), pp. 1400-1404, 2011	BibTeX DOI
William R. Taylor, Berry M. Pöpplau, Christian König, Rainald Ehrig, Stefan Zachow, Georg N. Duda, Markus O. Heller	The medial-lateral force distribution in the ovine stifle joint during walking	Journal of Orthopaedic Research, 29(4), pp. 567-571, 2011	BibTeX DOI
Benjamin Kettner, Frank Schmidt	The pole condition as transparent boundary condition for resonance problems	Physics and Simulation of Optoelectronic Devices XIX, p. 79331B, Vol.7933, 2011	BibTeX DOI
Markus O. Heller, Stefan Kratzenstein, Rainald Ehrig, Georgi Wassilew, Georg N. Duda, William R. Taylor	The weighted optimal common shape technique improves identification of the hip joint centre of rotation in vivo	Journal of Orthopedic Research, Vol.29, pp. 1470-5, 2011	BibTeX
Hans Wenzel, Paul Crump, Hossein Ekhteraei, Christoph M. Schultz, Jan Pomplun, Sven Burger, Lin Zschiedrich, Frank Schmidt, Götz Erbert	Theoretical and experimental analysis of the lateral modes of high-power broad-area lasers	Numerical Simulation of Optoelectronic Devices, pp. 143-144, 2011	BibTeX DOI
Alexander Bujotzek, Min Shan, Rainer Haag, Marcus Weber	Towards a rational spacer design for bivalent inhibition of estrogen receptor	J. Comput.-Aided Mol. Des., Vol.25(3), pp. 253-262, 2011	BibTeX
Felix Schlosser, Mario Schoth, Sven Burger, Frank Schmidt, Andreas Knorr, S. Mukamel, Marten Richter	Ultrafast nonlinear spectroscopy with spatially confined fields	AIP Conference Proceedings, Vol.1398, pp. 94-96, 2011	BibTeX DOI
2010
Sven Burger, Lin Zschiedrich, Frank Schmidt	3D FEM Simulations of High-Q Resonances in Photonic Crystal Microcavities	Integrated Photonics Research, Silicon and Nanophotonics, p. IWB7, 2010	BibTeX DOI
Stefan Kratzenstein, Rainald Ehrig, Markus O. Heller, Georg N. Duda, William R. Taylor	A Quantification of Accuracy in Estimating Joint Centers	17th Congress of the European Society of Biomechanics, 2010	BibTeX
Christof Schütte, Michael Wulkow	A hybrid Galerkin-Monte-Carlo approach to higher-dimensional population balances in polymerization kinetics	Macromol. React. Eng., Vol.4, pp. 562-577, 2010	BibTeX
Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georgi Wassilew, Georg N. Duda, William R. Taylor	A new approach for optimally reducing skin marker artifact allows determination of the hip joint center within 3mm	Transactions Vol. 35, 2010 Annual Meeting of the Orthopedic Society, 2010	BibTeX
Marcus Weber, Karsten Andrae	A simple method for the estimation of entropy differences	MATCH Commun. Math. Comp. Chem. 2010, Vol.63(2), pp. 319-332, 2010	BibTeX
Jan Pomplun, Frank Schmidt	Accelerated a posteriori error estimation for the reduced basis method with application to 3D electromagnetic scattering problems	SIAM J. Sci. Comput., Vol.32, pp. 498-520, 2010	BibTeX DOI
Jan Pomplun, Frank Schmidt, Sven Burger, Lin Zschiedrich	Adaptive Reduced Basis Method for Optical Scattering Problems	Integrated Photonics Research, Silicon and Nanophotonics, p. IWD4, 2010	BibTeX DOI
Fiete Haack, Susanna Röblitz, Olga Scharkoi, Burkhard Schmidt, Marcus Weber	Adaptive Spectral Clustering for Conformation Analysis	AIP Conference Proceedings, 1281(1), pp. 1585-1588, 2010	BibTeX DOI
Corinna Klapproth, Anton Schiela, Peter Deuflhard	Adaptive Timestep Control for the Contact-Stabilized Newmark Method	ZIB-Report 10-09 (Appeared in: Numerische Mathematik vol. 119 iss. 1 (2011), pp. 49-81)	PDF BibTeX URN
Daniel Ruprecht	Analysis of a multi-scale asymptotic model for internal gravity waves in a moist atmosphere	Doctoral thesis, Freie Universität Berlin, Rupert Klein, Andrew J. Majda (Advisors), 2010	PDF BibTeX URN
Anton Schiela, Martin Weiser	Barrier methods for a control problem from hyperthermia treatment planning	Recent Advances in Optimization and its Applications in Engineering (Proceedings of 14th Belgian-French-German Conference on Optimization 2009), pp. 419-428, M. Diehl, F. Glineur, E. Jarlebring, W. Michiels (Eds.), Springer, 2010 (preprint available as ZIB-Report 09-36)	PDF (ZIB-Report) BibTeX
Mathias Wilhelms, Gunnar Seemann, Martin Weiser, Olaf Dössel	Benchmarking Solvers of the Monodomain Equation in Cardiac Electrophysiological Modeling	Biomed. Engineer., Vol.55, pp. 99-102, 2010	BibTeX DOI
Konstantin Fackeldey	Challenges in Atomistic-to-Continuum Coupling	(preprint available as )	BibTeX DOI
Caroline Lasser, Susanna Röblitz	Computing expectation values for molecular quantum dynamics	SIAM Journal on Scientific Computing, 32(3), pp. 1465-1483, 2010	BibTeX DOI
Martin Weiser, Stefan Zachow, Peter Deuflhard	Craniofacial Surgery Planning Based on Virtual Patient Models	it - Information Technology, 52(5), pp. 258-263, 2010	BibTeX DOI
Martin Weiser	Delayed Residual Compensation for Bidomain Equations	AIP Conference Proceedings, Vol.1281, pp. 419-422, 2010	BibTeX DOI
Martin Weiser, Mathias Röllig, Ralf Arndt, Bodo Erdmann	Development and test of a numerical model for pulse thermography in civil engineering	Heat and Mass Transfer, 46(11-12), pp. 1419-1428, 2010 (preprint available as ZIB-Report 08-45)	PDF (ZIB-Report) BibTeX
D. Siegel, Karsten Andrae, Matthias Proske, C. Kochan, Matthias Koch, Marcus Weber, Irene Nehls	Dynamic covalent hydrazine chemistry as a specific extraction and cleanup technique for the quantification of the Fusarium mycotoxin zearalenone in edible oils	Journal of Chromatography A, Vol.1217(15), pp. 2206-15, 2010	BibTeX
Sven Burger, Lin Zschiedrich, Frank Schmidt	FEM Simulation of Plasmon Laser Resonances	AIP Conference Proceedings, Vol.1281, pp. 1613-1616, 2010	BibTeX DOI
Sven Burger, Frank Schmidt, Lin Zschiedrich	FEM simulation of resonances in low-Q cavities for plasmon lasers	International Workshop on Photonic Nanomaterials, Friedrich-Schiller-Universität Jena (Ed.), p. 36, 2010, ISBN: 978-3-00-031358-5	BibTeX
Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt	Finite element method for accurate 3D simulation of plasmonic waveguides	Integrated Optics: Devices, Materials, and Technologies XIV, p. 76040F, Vol.7604, 2010	BibTeX DOI
Jan Pomplun, Sven Burger, Frank Schmidt, Andrei Schliwa, Dieter Bimberg, Agnieszka Pietrzak, Hans Wenzel, Götz Erbert	Finite element simulation of the optical modes of semiconductor lasers	Phys. Status Solidi B, Vol.247, pp. 846-853, 2010	BibTeX DOI
Evgenios I. Kornaropoulos, William R. Taylor, Georg N. Duda, Rainald Ehrig, Georg Matziolis, Michael Müller, Georgi Wassilew, Patrick Asbach, Carsten Perka, Markus O. Heller	Frontal plane alignment: An imageless method to predict the mechanical femoral–tibial angle (mFTA) based on functional determination of joint centres and axes	Gait & Posture, 31(2), pp. 204-208, 2010	BibTeX DOI
J. Gansel, M. Wegener, Sven Burger, S. Linden	Gold helix photonic metamaterials: a numerical parameter study	Opt. Express, Vol.18, pp. 1059-1069, 2010	BibTeX DOI
H. H. Dieter, K. Götz, K. Kümmerer, B. Rechenberg, F. Keil	Handlungsmöglichkeiten zur Minderung des Eintrags von Humanarzneimitteln und ihren Rückständen in das Roh- und Trinkwasser.	H.H. Dieter, K. Götz, K. Kümmerer, B. Rechenberg, F. Keil (Eds.), Umweltbundesamt, 2010	PDF BibTeX
Peter Deuflhard, Susanna Röblitz, Claudia Stötzel	Mathematical Systems Biology at Zuse Institute Berlin (ZIB)	BioTOPics - Journal of Biotechnology in Berlin-Brandenburg, Vol.39, 2010	BibTeX
Peter Deuflhard, Olaf Dössel, Alfred Louis, Stefan Zachow	More Mathematics into Medicine!	Production Factor Mathematics, Springer, pp. 357-378, 2010	BibTeX
Y. Neve-Oz, T. Pollok, Sven Burger, M. Golosovsky, R. Lifshitz, D. Davidov	Negative Refraction and Omni Directionality in 2D Photonic Quasicrystal Superstructure	AIP Conference Proceedings, Vol.1281, p. 1622, 2010	BibTeX DOI
Sven Burger, Frank Schmidt, Lin Zschiedrich	Numerical Investigation of Photonic Crystal Microcavities in Silicon-on-Insulator Waveguides	Photonic and Phononic Crystal Materials and Devices X, p. 76091Q, Vol.7609, 2010	BibTeX DOI
Konstantin Fackeldey, Dorian Krause, Rolf Krause	Numerical Validation of Constraints Based Multiscale Methods	Lecture Notes in Computational Science and Engineering, Michael Griebel, M. Schweitzer (Eds.), pp. 141-154, 2010	BibTeX
Sven Burger, Frank Schmidt, Lin Zschiedrich	Numerical investigation of optical resonances in circular grating resonators	Silicon Photonics V, p. 760610, Vol.7606, 2010	BibTeX DOI
Ph. Metzner, Marcus Weber, Christof Schütte	Observation uncertainty in reversible Markov chains	Phys. Rev. E, 82(3), p. 031114, 2010	BibTeX DOI
Martin Weiser, Bodo Erdmann, Peter Deuflhard	On Efficiency and Accuracy in Cardioelectric Simulation	Progress in Industrial Mathematics at ECMI 2008, pp. 371-376, E. Wilson, A. Fitt, H. Ockendon, J. Norbury (Eds.), Springer, 2010 (preprint available as ZIB-Report 08-41)	PDF (ZIB-Report) BibTeX
Peter Wust, Mirko Weihrauch, Martin Weiser, Johanna Gellermann, Steffen Eisenhardt, Thorsten Chobrok, Volker Budach	Optimization of clinical radiofrequency hyperthermia by use of MR-thermography in a hybrid system	World Congress on Medical Physics and Biomedical Engineering, September 2009, Munich, Germany, pp. 174-175, O. Dössel, W. Schlegel, R. Magjarevic (Eds.), Springer, 2010	BibTeX
Jan Pomplun, Frank Schmidt	Reduced Basis Method for Electromagnetic Field Computations	Scientific Computing in Electrical Engineering SCEE 2008, Springer Berlin Heidelberg, p. 85, 2010	BibTeX DOI
Jan Pomplun	Reduced basis method for electromagnetic scattering problems	Doctoral thesis, Freie Universität Berlin, Frank Schmidt (Advisor), 2010	BibTeX URN
Jan Pomplun, Lin Zschiedrich, Sven Burger, Frank Schmidt, Jacek Tyminski, Donis Flagello, N. Toshiharu	Reduced basis method for source mask optimization	Photomask Technology, p. 78230E, Vol.7823, 2010	BibTeX DOI
Maximilian Ranneberg, Martin Weiser, Mirko Weihrauch, Volker Budach, Johanna Gellermann, Peter Wust	Regularized Antenna Profile Adaptation in Online Hyperthermia Treatment	Medical Physics, Vol.37, pp. 5382-5394, 2010	BibTeX DOI
Y. Neve-Oz, T. Pollok, Sven Burger, M. Golosovsky, D. Davidov	Resonant Transmission of Electromagnetic Waves through 2D Photonic Quasicrystals	J. Appl. Phys., Vol.107, p. 063105, 2010	BibTeX DOI
Sebastian Götschel, Martin Weiser	State Trajectory Compression in Optimal Control	PAMM, 10(1), pp. 579-580, 2010	BibTeX DOI
Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georg N. Duda, William R. Taylor	The Hip Joint Centre can be determined to within 3 mm	17th Congress of the European Society of Biomechanics, 2010	BibTeX
Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georg N. Duda, William R. Taylor	The Residual: A Reliable Measure of Accuracy in the Determination of Joint Centers	Transactions Vol. 35, 2010 Annual Meeting of the Orthopedic Society, 2010	BibTeX
Christian Meyer, Lucia Panizzi, Anton Schiela	Uniqueness criteria for solutions of the adjoint equation in state-constrained optimal control	ZIB-Report 10-28	PDF BibTeX URN
2009
André Massing	1D-Reduktion thermal signifikanter Aderstränge in der Hyperthermie-Modellierung	Master's thesis, Freie Universität Berlin, Martin Weiser, Peter Deuflhard (Advisors), 2009	PDF BibTeX URN
Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt, Benjamin Kettner, D. Lockau	3D Finite-Element Simulations of Enhanced Light Transmission Through Arrays of Holes in Metal Films	Numerical Methods in Optical Metrology, p. 73900H, Vol.7390, 2009	BibTeX DOI
Corinna Klapproth, Peter Deuflhard, Anton Schiela	A Perturbation Result for Dynamical Contact Problems	Numer. Math, Vol.2, pp. 237-257, 2009 (preprint available as ZIB-Report 08-27)	PDF (ZIB-Report) BibTeX
Heiko Schmidt, Michael Oevermann, Rob J.M. Bastiaans, Alan R. Kerstein	A Priori Tabulation of Turbulent Flame Speeds via a Combination of a Stochastic Mixing Model and Flamelet Generated Manifolds, Extended to Incorporate Strain Effects	ZIB-Report 09-09	PDF BibTeX URN
Marcus Weber	A Subspace Approach to Molecular Markov State Models via an Infinitesimal Generator	ZIB-Report 09-27	PDF PDF BibTeX URN
Julia Skibina, Rumen Iliew, Jens Bethge, Martin Bock, Dorit Fischer, Valentin Beloglazov, Reiner Wedell, Sven Burger, Günter Steinmeyer	A chirped photonic crystal fiber for high-fidelity guiding of sub-100 fs pluses	CLEO/QELS, p. CMHH1, 2009	BibTeX DOI
Julia Skibina, Rumen Iliew, Jens Bethge, Martin Bock, Dorit Fischer, Valentin Beloglazov, Reiner Wedell, Sven Burger, Günter Steinmeyer	A chirped photonic crystal fiber for ultrashort laser pulse delivery	CLEO Europe - EQEC, 2009	BibTeX DOI
Susanne Kilian, Matthias Münch	A new generalized domain decomposition strategy for the efficient parallel solution of the FDS-pressure equation. Part I: Theory, Concept and Implementation	ZIB-Report 09-19	PDF BibTeX URN
Matthias Münch, Susanne Kilian	A new generalized domain decomposition strategy for the efficient parallel solution of the FDS-pressure equation. Part II: Verification and Validation	ZIB-Report 09-20	PDF BibTeX URN
D. Lockau, Lin Zschiedrich, Sven Burger	Accurate simulation of light transmission through subwavelength apertures in metal films	J. Opt. A, Vol.11, p. 114013, 2009	BibTeX DOI arXiv
Peter Deuflhard, Bodo Erdmann, Rainer Roitzsch, Glenn Terje Lines	Adaptive Finite Element Simulation of Ventricular Dynamics	J. Computing and Visualization in Science, Vol.12, pp. 201-205, 2009	BibTeX
Anton Schiela	An Extended Mathematical Framework for Barrier Methods in Function Space	Domain Decomposition Methods in Science and Engineering XVIII, Vol.70, Lecture Notes in Computational Science and Engineering, 2009 (preprint available as ZIB-Report 08-07)	PDF (ZIB-Report) BibTeX
Evgenios I. Kornaropoulos, William R. Taylor, Georg N. Duda, Rainald Ehrig, Markus O. Heller	An imageless method to quantify the Mechanical Femoral-Tibial Angle (MFTA) using functionally defined joint centers and axes.	6th Annual meeting of the German Society for Biomechanics (DGfB), 2009	BibTeX
Evgenios I. Kornaropoulos, William R. Taylor, Georg N. Duda, Rainald Ehrig, Georg Matziolis, Michael Müller, Georgi Wassilew, Patrick Asbach, Carsten Perka, Markus O. Heller	An imageless method to quantify the mechanical femoral-tibial angle based on the functional determination of joint centers and axes	Annual meeting of the ESMAC 2009, 2009	BibTeX
Anton Schiela	Barrier Methods for Optimal Control Problems with State Constraints	SIAM J. on Optimization, 20(2), pp. 1002-1031, 2009 (preprint available as )	BibTeX
Johannes Hoffmann, Christian Hafner, P. Leidenberger, J. Hesselbarth, Sven Burger	Comparison of electromagnetic field solvers for the 3D analysis of plasmonic nano antennas	Numerical Methods in Optical Metrology, p. 73900J, Vol.7390, 2009	BibTeX DOI
Caroline Lasser, Susanna Röblitz	Computing expectation values for molecular quantum dynamics	ZIB-Report 09-30 (Appeared in: SIAM J. Sci. Comput. 2010, 32(3), pp. 1465-1483)	PDF BibTeX URN DOI
O. Scharkoi	Conformation Dynamics Design of Pain Relief Drugs	Master's thesis, Freie Universität Berlin, 2009	BibTeX
Corinna Klapproth, Anton Schiela, Peter Deuflhard	Consistency Results for the Contact-Stabilized Newmark Method	ZIB-Report 09-06 (Appeared under the title "Consistency Results on Newmark Methods for Dynamical Contact Problems" in: Numer. Math., 116/1:65-94 (2010))	PDF BibTeX URN
M. Karl, Benjamin Kettner, Sven Burger, Frank Schmidt, H. Kalt, M. Hetterich	Dependencies of micro-pillar cavity quality factors calculated with finite element methods	Optics Express, Vol.17, p. 1144, 2009	BibTeX DOI
Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georg N. Duda, Jörg H. Schröder, William R. Taylor	Der Vergleich von nicht-invasiven Techniken zur Bestimmung der Hüftgelenksposition	Annual meeting of the German Society of Orthopaedics and Trauma Surgery, 2009	BibTeX
Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georg N. Duda, Jörg H. Schröder, William R. Taylor	Die Bestimmung der Genauigkeit nicht-invasiver Techniken zur Ermittlung der Hüftgelenksposition in-vivo	6th annual meeting of the German Society for Biomechanics (DGfB), 2009	BibTeX
Alexander Bujotzek, Marcus Weber	Efficient Simulation of Ligand-Receptor Binding Processes Using the Conformation Dynamics Approach	Journal of Bioinformatics and Computational Biology, Vol.7(5), pp. 811-831, 2009	BibTeX
D. Lockau, Lin Zschiedrich, Frank Schmidt, Sven Burger, Bernd Rech	Efficient simulation of plasmonic structures for solar cells	International Workshop on Optical Waveguide Theory and Numerical Modelling, p. 48, Vol.XVIII, 2009	BibTeX
Y. Neve-Oz, T. Pollok, Sven Burger, M. Golosovsky, D. Davidov	Fast Light and Focusing in 2D Photonic Quasicrystals	PIERS Online, Vol.5, p. 451, 2009	BibTeX DOI
Sven Burger, B. Kleemann, Lin Zschiedrich, Frank Schmidt	Finite-Element Simulations of Light Propagation through Circular Subwavelength Apertures	Microtechnologies for the New Millenium, p. 736621, Vol.7366, 2009	BibTeX DOI
Sven Burger, D. Lockau, Lin Zschiedrich, Frank Schmidt	Finite-element simulations of light propagation through subwavelength apertures in metal films	International Workshop on Optical Waveguide Theory and Numerical Modelling, p. 59, Vol.XVIII, 2009	BibTeX
Evgenios I. Kornaropoulos, William R. Taylor, Georg N. Duda, Rainald Ehrig, Markus O. Heller	Frontal plane lower limb alignment using functionally determined joint centers and axes	International Conference on Computational Bioengineering, 2009	BibTeX
Susanna Röblitz, Marcus Weber	Fuzzy Spectral Clustering by PCCA+	Classification and Clustering: Models, Software and Applications, pp. 73-79, 2009	BibTeX
Jens Bethge, Günter Steinmeyer, Sven Burger, Falk Lederer, Rumen Iliew	Guiding properties of chirped photonic crystal fibers	Journal of Lightwave Technology, Vol.27, p. 1698, 2009	BibTeX DOI
Robert Köppen, Roland Becker, Marcus Weber, Vedat Durmaz, Irene Nehls	HBCD stereoisimers: Thermal interconversion and enantiospecific trace analysis in biota	Organohalogen Compounds, Vol.70, pp. 910-913, 2009	BibTeX
Manuel Decker, Sven Burger, S. Linden, M. Wegener	Magnetization waves in split-ring-resonator arrays	Phys. Rev. B, 80(19), p. 193102, 2009	BibTeX DOI
Isabel Reinecke	Mathematical modeling and simulation of the female menstrual cycle	Doctoral thesis, Freie Universität Berlin, 2009	BibTeX
Daniel Ruprecht, Rupert Klein, Andrew J. Majda	Moisture-Gravity Wave Interactions in a Multiscale Environment	ZIB-Report 09-21	PDF BibTeX URN
Konstantin Fackeldey, Rolf Krause	Multiscale Coupling in Function Space - Weak Coupling between Molecular Dynamics and Continuum Mechanics	International Journal for Numerical Methods in Engineering, 79(12), pp. 1517-1535, 2009	BibTeX DOI
William R. Taylor, Stefan Kratzenstein, Evgenios I. Kornaropoulos, Rainald Ehrig, Philippe Moewis, Markus O. Heller	Non-invasive Assessment of Skeletal Kinematics	Measurement and Sensing in Medicine and Health, 2009	BibTeX
Sven Burger, Lin Zschiedrich	Numerical Investigation of Silicon-on-Insulator 1D Photonic Crystal Microcavities	Theoretical and computational nanooptics, Dmitry Chigrin (Ed.), pp. 43-45, Vol.1176, 2009	BibTeX DOI
Heiko Schmidt, Carmen Jimenéz	Numerical study of the direct pressure effect of acoustic waves in planar premixed flames	ZIB-Report 09-31	PDF BibTeX URN
Martin Weiser	Optimization and Identification in Regional Hyperthermia	Int. J. Appl. Electromagn. and Mech., Vol.30, pp. 265-275, 2009 (preprint available as ZIB-Report 08-40)	PDF (ZIB-Report) BibTeX
Martin Weiser	Pointwise Nonlinear Scaling for Reaction-Diffusion Equations	Appl. Num. Math., 59(8), pp. 1858-1869, 2009 (preprint available as ZIB-Report 07-45)	PDF (ZIB-Report) BibTeX
Marcus Weber, Vedat Durmaz, Roland Becker, Susanne Esslinger	Predictive Identification of Pentabromocyclododecane (PBCD) Isomers with high Binding Affinity to hTTR	Organohalogen Compounds, Vol.71, pp. 247-252, 2009	BibTeX
Jan Pomplun, Lin Zschiedrich, Sven Burger, Frank Schmidt	Reduced basis method for computational lithography	Photomask Technology, p. 74882B, Vol.7488, 2009	BibTeX DOI
Jan Pomplun, Frank Schmidt	Reduced basis method for fast and robust simulation of electromagnetic scattering problems	Numerical Methods in Optical Metrology, p. 73900I, Vol.7390, 2009	BibTeX DOI
Stefan Kratzenstein, William R. Taylor, Rainald Ehrig, Markus O. Heller	Reduction of the influence of skin marker artefacts using the optimal common shape technique	Annual meeting of the ESMAC 2009, 2009	BibTeX
Fiete Haack	Representative Spectral Clustering for Large Data Sets applied to Gene Expression Data	Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2009	BibTeX
William R. Taylor, Evgenios I. Kornaropoulos, Rainald Ehrig, Markus O. Heller, Georg N. Duda	Reproducibility of a functional approach to gait analysis	Annual meeting of the ESMAC 2009, 2009	BibTeX
Sven Burger	Simulation method improves accuracy for optical metrology and nanooptics design	SPIE Newsroom, 2009	BibTeX DOI
Marcus Weber	Spurenstoffe im Trinkwasser - Risikoqualifizierung im Rechner?	Schriftenreihe des Vereins für Wasser-, Boden- und Lufthygiene, L. Dunemann, O. Schmoll (Eds.), 2009	BibTeX
Anton Schiela	State constrained optimal control problems with states of low regularity	SIAM J. on Control and Optimization, 48(4), pp. 2407-2432, 2009 (preprint available as ZIB-Report 08-24)	PDF (ZIB-Report) BibTeX
Susanna Röblitz	Statistical Error Estimation and Grid-free Hierarchical Refinement in Conformation Dynamics	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Wilhelm Huisinga (Advisors), 2009	PDF BibTeX URN
Uwe Prüfert, Anton Schiela	The Minimization of a maximum-norm functional subject to an elliptic PDE and state constraints	Z. angew. Math. Mech., 89(7), pp. 536-551, 2009 (preprint available as ZIB-Report 08-17)	PDF (ZIB-Report) BibTeX
Konstantin Fackeldey	The Weak Coupling Method for Coupling Continuum Mechanics with Molecular Dynamics	Doctoral thesis, Institute for Numerical Simulation, Uni Bonn, 2009	BibTeX
Vedat Durmaz	Theoretical Investigations on HBCD and PBCD	Master's thesis, Freie Universität Berlin, 2009	BibTeX
Lin Zschiedrich	Transparent boundary conditions for Maxwell's equations: Numerical concepts beyond the PML method	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Ralf Hiptmair (Advisors), 2009	PDF BibTeX URN
Konstantin Fackeldey, Dorian Krause, Rolf Krause	Weak Coupling Algorithms in Multiscale Simulations	Proceedings of the third Inter. Confer. on Comp. Meth. for Coupled Problems in Science and Engrg, p. 1023pp, 2009	BibTeX
2008
Xavier Antoine, Anton Arnold, Christophe Besse, Matthias Ehrhardt, Achim Schädle	A Review of Transparent and Artificial Boundary Conditions Techniques for Linear and Nonlinear Schrödinger Equations	Commun. Comput. Phys., Vol.4, pp. 729-796, 2008 (preprint available as ZIB-Report 07-34)	PDF (ZIB-Report) BibTeX
Anton Schiela	A Simplified Approach to Semismooth Newton Methods in Function Space	SIAM J. on Optimization, 19(3), pp. 369-393, 2008	BibTeX
Martin Weiser, Tobias Gänzler, Anton Schiela	A control reduced primal interior point method for a class of control constrained optimal control problems	Comput. Optim. Appl., 41(1), pp. 127-145, 2008 (preprint available as ZIB-Report 04-38)	PDF (ZIB-Report) BibTeX
Heiko Schmidt, Michael Oevermann, Rob J.M. Bastiaans, Alan R. Kerstein	A priori Tabulation of Turbulent Flame Speeds via a Combination of a Stochastic Mixing Model and Flamelet Generated Manifolds	ZIB-Report 08-02	PDF BibTeX URN
Lin Zschiedrich, Sven Burger, Achim Schädle, Frank Schmidt	A rigorous finite-element domain decomposition method for electromagnetic near field simulations	Optical Microlithography XXI, Harry Levinson, Mircea Dusa (Eds.), Vol.6924, 2008	BibTeX DOI
Peter Deuflhard, Wilhelm Huisinga, Tobias Jahnke, Michael Wulkow	Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation	SIAM J. Sci. Comput, 30(6), pp. 2990-3011, 2008 (preprint available as ZIB-Report 07-04)	PDF (ZIB-Report) BibTeX
Maria Lopez-Fernandez, Christian Lubich, Achim Schädle	Adaptive, Fast and Oblivious Convolution in Evolution Equations with Memory	SIAM J. Sci. Comput., 30(2), pp. 1015-1037, 2008 (preprint available as ZIB-Report 06-45)	PDF (ZIB-Report) BibTeX DOI
Frank Schmidt, Sven Burger, Jan Pomplun, Lin Zschiedrich	Advanced FEM analysis of optical waveguides: algorithms and applications	Integrated Optics, Christoph Greiner, Christoph Wächter (Eds.), p. 689602, Vol.6896, 2008	BibTeX DOI
Marcus Weber	An efficient analysis of rare events in canonical ensemble dynamics	ZIB-Report 08-36	PDF BibTeX URN
Gunter Carqué, Antony Z. Owinoh, Rupert Klein, Andrew J. Majda	Asymptotic Scale Analysis of Precipitating Clouds	ZIB-Report 08-03	PDF BibTeX URN
Anton Schiela, Winnifried Wollner	Barrier Methods for Optimal Control Problems with Convex Nonlinear Gradient Constraints	ZIB-Report 08-47	PDF BibTeX URN
Sven Burger, Lin Zschiedrich, Frank Schmidt, Peter Evanschitzky, Andreas Erdmann	Benchmark of rigorous methods for electromagnetic field simulation	Photomask Technology, H. Kawahira, L. S. Zurbrick (Eds.), p. 71221, Vol.7122, 2008	BibTeX DOI
Juan Pedro Mellado, Bjorn Stevens, Heiko Schmidt, Norbert Peters	Buoyancy-reversal in cloud-top mixing layers	ZIB-Report 08-50	PDF BibTeX URN
Konstantin Fackeldey, Rolf Krause	CM/MD Coupling - A Function Space Oriented Multiscale-Coupling Approach	Proc. Appl. Math. Mech., p. 10495pp, 8(1), 2008	BibTeX
Marcus Weber, Roland Becker, Robert Köppen, Vedat Durmaz	Classical hybrid Monte-Carlo simulations of the interconversion of hexabromocyclododecane	Journal of Molecular Simulation, 34(7), pp. 727-736, 2008 (preprint available as ZIB-Report 07-31)	PDF (ZIB-Report) BibTeX
Susanna Kube, Marcus Weber	Computation of equilibrium densities in metastable dynamical systems by domain decomposition	Numerical Analysis and Applied Mathematics, International Conference on Numerical Analysis and Applied Mathematics 2008, pp. 339-342, Vol.1048, 2008	BibTeX
G. Bergmann, F. Graichen, A. Rohlmann, Alwina Bender, Rainald Ehrig, P. Westerhoff, B. Heinlein	Design and calibration of load sensing orthopaedic implants	Journal Biomech. Eng., pp. 02109-1–02109–9, 2008	BibTeX
Frank Scholze, Christian Laubis, Gerhard Ulm, Uwe Dersch, Jan Pomplun, Sven Burger, Frank Schmidt	Evaluation of EUV scatterometry for CD characterization of EUV masks using rigorous FEM-simulation	Emerging Lithographic Technologies XII, Frank Schellenberg (Ed.), Vol.6921, 2008	BibTeX
Sven Burger, Lin Zschiedrich, Benjamin Kettner, Frank Schmidt	FEM simulation of light scattering by nonspherical objects	Mie Theory 1908 – 2008, W. Hergert, T. Wriedt (Eds.), Universität Bremen, pp. 82-83, 2008	BibTeX
Michael Wulkow	Feature article - Computer Aided Modeling of Polymer Reaction Engineering - The Status of Predici, 1 - Simulation	Macromol. React. Eng., Vol.2, pp. 461-494, 2008	BibTeX
Jan Pomplun, Lin Zschiedrich, Roland Klose, Frank Schmidt, Sven Burger	Finite Element Simulation of Radiation Losses in Photonic Crystal Fibers	Nanophotonic Materials: Photonic Crystals, Plasmonics, and Metamaterials, Wiley-VCH, pp. 313-331, 2008	BibTeX DOI
Lin Zschiedrich, Frank Schmidt	Finite element simulation of light propagation in non-periodic mask patterns	Photomask and Next-Generation Lithography Mask Technology XV, Toshiyuki Horiuchi (Ed.), Vol.7028, 2008	BibTeX
O. Schenk, Andreas Wächter, Martin Weiser	Inertia Revealing Preconditioning For Large-Scale Nonconvex Constrained Optimization	SIAM J. Sci. Comp., 31(2), pp. 939-960, 2008 (preprint available as ZIB-Report 07-32)	PDF (ZIB-Report) BibTeX
Anton Schiela, Andreas Günther	Interior Point Methods in Function Space for State Constraints - Inexact Newton and Adaptivity	ZIB-Report 09-01 (A rev. vers. appeared u. the title "An interior point algorithm with inexact step computation in function space for state constrained optimal control" in: Numerische Mathematik 119(2): 373-407(2011))	PDF BibTeX URN
Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt	JCMsuite: An Adaptive FEM Solver for Precise Simulations in Nano-Optics	Integrated Photonics and Nanophotonics Research and Applications, p. ITuE4, 2008	BibTeX DOI
Michael Oevermann, Heiko Schmidt, Alan R. Kerstein	Linear-Eddy Modeling of Autoignition under Thermal Stratification	ZIB-Report 08-05	PDF BibTeX URN
Peter Deuflhard, Olaf Dössel, Alfred Louis, Stefan Zachow	Mehr Mathematik wagen in der Medizin	ZIB-Report 08-25 (Ersch. in: Produktionsfaktor Mathematik : wie Mathematik Technik und Wirtschaft bewegt / Martin Grötschel, Klaus Lucas, Volker Mehrmann (Hrsg.) Berlin : Springer, 2009. (acatech diskutiert) ISBN 978-3-540-89434-6 S. 435-459)	PDF BibTeX URN
Jan Pomplun, Sven Burger, Frank Schmidt, Frank Scholze, Christian Laubis, Uwe Dersch	Metrology of EUV masks by EUV-scatterometry and finite element analysis	Photomask and Next-Generation Lithography Mask Technology XV, Toshiyuki Horiuchi (Ed.), Vol.7028, 2008	BibTeX
Christian Hellmich, Cornelia Kober, Bodo Erdmann	Micromechanics-based conversion of CT data into anisotropic elasticity tensors, applied to FE simulations of a mandible	Annals of Biomedical Engineering, 36(1), pp. 108-122, 2008	BibTeX DOI
Isabel Reinecke, Peter Deuflhard	Model Development and Decomposition in Physiology	Handbook of Research on Systems Biology Applications in Medicine, A. Daskalaki (Ed.), pp. 759-797, Vol.2, 2008	BibTeX
Stefan Zachow, Martin Weiser, Peter Deuflhard	Modellgestützte Operationsplanung in der Kopfchirurgie	Modellgestützte Therapie, Wolfgang Niederlag, Heinz Lemke, Jürgen Meixensberger, Michael Baumann (Eds.), Health Academy, pp. 140-156, 2008	BibTeX
Ingo Schräer	Modellreduktion in der Hyperthermie mittels POD	Master's thesis, FU Berlin, 2008	BibTeX
Ingo Schräer	Modellreduktion in der regionalen Hyperthermie mittels POD	Master's thesis, FU Berlin, 2008	BibTeX
Susanna Kube, Caroline Lasser, Marcus Weber	Monte Carlo sampling of Wigner functions and surface hopping quantum dynamics	Journal of Computational Physics, 228(6), pp. 1947-1962, 2008 (preprint available as ZIB-Report 07-17)	PDF (ZIB-Report) BibTeX DOI
Gunter Carqué, Heiko Schmidt, Bjorn Stevens, Rupert Klein	Plausibility Check of an Asymptotic Column Model for Deep Convective Clouds	ZIB-Report 08-44	PDF BibTeX URN
Frank Schmidt, Thorsten Hohage, Roland Klose, Achim Schädle, Lin Zschiedrich	Pole condition: A numerical method for Helmholtz-type scattering problems with inhomogeneous exterior domain	J. Comput. Appl. Math., 218(1), pp. 61-69, 2008	BibTeX DOI
P.-J. Lin, L. Grimm, Michael Wulkow, D. Hempel, R. Krull	Population Balance Modeling of the Conidial Aggregation of Aspergillus niger	Biotechnology and Bioengineering, 99(2), pp. 341-350, 2008	BibTeX
Susanna Kube, Marcus Weber	Preserving the Markov Property of Reduced Reversible Markov Chains	Numerical Analysis and Applied Mathematics, International Conference on Numerical Analysis and Applied Mathematics 2008, pp. 593-596, Vol.1048, 2008	BibTeX
Fiete Haack	Properties of Reduced Reversible Markov Chains	ZIB-Report 08-42	PDF BibTeX URN
Konstantin Fackeldey, Dorian Krause, Rolf Krause	Quadrature and Implementation of the Weak Coupling Method	MMM 2008: Proceedings of the 4th International Conference on Multiscale Materials Modelling, 27-31 October 2008, Tallahassee, Fla., pp. 62-65, 2008	BibTeX
Jan Pomplun, Frank Schmidt	Reduced Basis Method for Nano Optical Simulations	Integrated Photonics and Nanophotonics Research and Applications, p. IWD7, 2008	BibTeX
A. Guerler, Sebastian Moll, Marcus Weber, Holger Meyer, Frank Cordes	Selection and flexible optimization of binding modes from conformation ensembles	Biosystems, 92(1), pp. 42-48, 2008	BibTeX DOI
Konstantin Fackeldey, Rolf Krause, M. Schweitzer	Stability of Energy Transfer in the Weak Coupling Method	Meshfree Methods for Partial Differential Equations IV, Michael Griebel, M. Schweitzer (Eds.), pp. 111-121, Vol.65, Lecture Notes in Computational Science and Engineering, 2008	BibTeX
Anton Schiela, Martin Weiser	Superlinear convergence of the Control Reduced Interior Point Method for PDE Constrained Optimization	Computational Optimization and Applications, 39(3), pp. 369-393, 2008 (preprint available as ZIB-Report 05-15)	PDF (ZIB-Report) BibTeX
Stefan Brüggemann, Nanette Bauer, Eberhard Fuchs, Axel Polt, Bernhard Wagner, Michael Wulkow	Support of Strategic Business Decisions at BASF’s Largest Integrated Production Site Based on Site-Wide Verbund Simulation	Computer Aided Chem. Eng., Vol.25, pp. 925-930, 2008	BibTeX
Uwe Prüfert, Fredi Tröltzsch, Martin Weiser	The convergence of an interior point method for an elliptic control problem with mixed control-state constraints	Comput. Optim. Appl., 39(2), pp. 183-218, 2008 (preprint available as ZIB-Report 04-47)	PDF PDF (ZIB-Report) BibTeX
Daniel Ruprecht, Achim Schädle, Frank Schmidt, Lin Zschiedrich	Transparent boundary conditions for time-dependent problems	SIAM J. Sci. Comput., 30(5), pp. 2358-2385, 2008 (preprint available as ZIB-Report 07-12)	PDF (ZIB-Report) BibTeX DOI
2007
Andre Massing	1D-Reduktion thermal signifikanter Aderstränge in der Hyperthermie-Modellierung	Master's thesis, FU Berlin, 2007	BibTeX
Andre Massing	1D-Reduktion thermal signifikanter Aderstränge in der Hyperthermie-Modellierung	Master's thesis, FU Berlin, 2007	BibTeX
Sven Burger, Lin Zschiedrich, Frank Schmidt, Roderick Köhle, Thomas Henkel, Bernd Küchler, Christoph Nölscher	3D simulations of electromagnetic fields in nanostructures using the time-harmonic finite-element method	Modeling Aspects in Optical Metrology, Harald Bosse (Ed.), p. 66170V, Vol.6617, 2007	BibTeX DOI
Susanna Kube, Marcus Weber	A Coarse Graining Method for the Identification of Transition rates between Molecular Conformations	Journal of Chemical Physics, 126(2), 2007	BibTeX DOI
Isabel Reinecke, Peter Deuflhard	A Complex Mathematical Model of the Human Menstrual Cycle	Journal of Theoretical Biology, 247(2), pp. 303-330, 2007 (preprint available as )	BibTeX
Peter Deuflhard, Rolf Krause, Susanne Ertel	A Contact-Stabilized Newmark Method for Dynamical Contact Problems	International Journal for Numerical Methods in Engineering, 73(9), pp. 1274-1290, 2007 (preprint available as )	BibTeX
M. Soares, G. Teschke, M. Zhariy	A Regularization for Nonlinear Diffusion Equations in a Multiresolution Framework	Mathematical Methods in Applied Sciences, 2007	BibTeX
Rainald Ehrig, William R. Taylor, Georg N. Duda, Markus O. Heller	A Survey for Formal Methods for Determining Functional Joint Axes	Journal of Biomechanics, pp. 2150-2157, 2007	BibTeX
Markus O. Heller, Christian König, F. Graichen, S. Hinterwimmer, Rainald Ehrig, G. Duda, William R. Taylor	A new model to predict in vivo human knee kinematics under physiological-like muscle activation	Journal of Biomechanics, pp. 45-53, 2007	BibTeX
Mirko Weihrauch, Peter Wust, Martin Weiser, Johanna Nadobny, Steffen Eisenhardt, Volker Budach, Johanna Gellermann	Adaptation of antenna profiles for control of MR guided hyperthermia (HT) in a hybrid MR-HT system	Medical Physics, 34(12), pp. 4717-4725, 2007	BibTeX
Jan Pomplun, Sven Burger, Lin Zschiedrich, Frank Schmidt	Adaptive finite element method for simulation of optical nano structures	Phys. Status Solidi B, Vol.244, pp. 3419-3434, 2007	BibTeX DOI arXiv
Achim Schädle, Lin Zschiedrich	Additive Schwarz method for scattering problems using the PML method at interfaces	Domain Decomposition Methods in Science and Engineering XVI, Olof Widlund, David Keyes (Eds.), pp. 205-212, Vol.55, Lecture Notes in computational Science and Engineering, 2007 (preprint available as ZIB-Report 05-27)	PDF (ZIB-Report) BibTeX
V. Lehmann, G. Teschke	Advanced Intermittent Clutter Filtering for Radar Wind Profiler	under review, 2007	BibTeX
Johanna Nadobny, Mirko Weihrauch, Martin Weiser, Johanna Gellermann, Waldemar Wlodarczyk, Volker Budach, Peter Wust	Advances in the Planning and Control of the MR-guided Regional Hyperthermia Applications	Proc. Int. Conf. Electromagnetics in Advanced Applications, ICEAA 2007, Torino, Italy, pp. 1010-1013, 2007	BibTeX
Martin Weiser, Peter Deuflhard, Bodo Erdmann	Affine conjugate adaptive Newton methods for nonlinear elastomechanics	Opt. Meth. Softw., 22(3), pp. 413-431, 2007 (preprint available as ZIB-Report 04-01)	PDF (ZIB-Report) BibTeX
Anton Schiela	An Interior Point Method in Function Space for the Efficient Solution of State Constrained Optimal Control Problems	ZIB-Report 07-44	PDF BibTeX URN
G. Teschke, R. Ramlau	An Iterative Algorithm for Nonlinear InverseProblems with Joint Sparsity Constraints in Vector Valued Regimes and an Application to Color Image Inpainting	under review, 2007	BibTeX
P. Iedema, Michael Wulkow, H. Hoefsloot	Conditional Monte Carlo sampling to find branching architectures of polymers from radical polymerizations with transfer to polymer and recombination termination	Polymer, 48(6), pp. 1770-1784, 2007	BibTeX
Marcus Weber	Conformation-based transition state theory	ZIB-Report 07-18	PDF BibTeX URN
Achim Schädle, Lin Zschiedrich, Sven Burger, Roland Klose, Frank Schmidt	Domain Decomposition Method for Maxwell’s Equations	J. Comput. Phys., Vol.226, pp. 477-493, 2007 (preprint available as ZIB-Report 06-04)	PDF (ZIB-Report) BibTeX DOI
Sven Burger, Lin Zschiedrich, Frank Schmidt, Roderick Köhle, Bernd Küchler, Christoph Nölscher	EMF Simulations of Isolated and Periodic 3D Photomask Patterns	Photomask Technology, p. 6630, Vol.6730, 2007	BibTeX
Bodo Erdmann, M. Ljubijankic, C. Nytsch-Geusen	Entwicklung einer Toolbox zur zwei- und dreidimensionalen instationären thermischen Bauteilsimulation mit KARDOS	Bauphsik, 29(1), pp. 33-39, 2007	BibTeX
Jan Pomplun, Ronald Holzlöhner, Sven Burger, Lin Zschiedrich, Frank Schmidt	FEM investigation of leaky modes in hollow core photonic crystal fibers	Proc. SPIE, Photonic Crystal Materials and Devices VI, Ali Adibi, Axel Scherer, Shawn-Yu Lin (Eds.), p. 64800M, Vol.6480, 2007	BibTeX
Jan Pomplun, Sven Burger, Frank Schmidt, Frank Scholze, Christian Laubis, Uwe Dersch	Finite element analysis of EUV lithography	Modeling Aspects in Optical Metrology, Harald Bosse (Ed.), p. 661718, Vol.6617, 2007	BibTeX DOI
Jan Pomplun, Lin Zschiedrich, Roland Klose, Frank Schmidt, Sven Burger	Finite element simulation of radiation losses in photonic crystal fibers	phys. stat. sol. (a), 204(11), pp. 3822-3837, 2007	BibTeX DOI
S. Dahlke, G. Steidl, G. Teschke	Frames and Coorbit Theory on Homogeneous Spaces with a Special Guidance on the Sphere	Special Issue, 2007	BibTeX
R. Grosch, Heiko Briesen, Michael Wulkow, Wolfgang Marquardt	Generalization and numerical investigation of QMOM for crystallization processes	AIChE J., Vol.53, pp. 207-227, 2007	BibTeX
Lin Zschiedrich, Sven Burger, Jan Pomplun, Frank Schmidt	Goal oriented adaptive finite element method for precise simulation of optical components	Proc. SPIE, Integrated Optics, Y. Sidorin, Ch. Waechter (Eds.), p. 64750H, Vol.6475, 2007	BibTeX
Martin Weiser, Peter Deuflhard	Inexact central path following algorithms for optimal control problems	SIAM J. Control Opt., 46(3), pp. 792-815, 2007 (preprint available as )	BibTeX
I. Daubechies, G. Teschke, Luminita Vese	Iteratively solving linear inverse problems with general convex constraints	InverseProblems and Imaging, 1(1), pp. 29-46, 2007	BibTeX
G. J. Pearce, G. S. Wiederhecker, Christopher G. Poulton, Sven Burger, P. St. J. Russell	Models for guidance in kagome-structured hollow-core photonic crystal fibres	Optics Express, Vol.15, p. 12680, 2007	BibTeX DOI
G. Teschke	Multi-Frame Representations in Linear InverseProblems with Mixed Multi-Constraints	Applied and Computational Harmonic Analysis, Vol.22, pp. 43-60, 2007	BibTeX
G. Dolling, M. Klein, M. Wegener, Achim Schädle, Sven Burger, S. Linden	Negative beam displacement for negative-index photonic metamaterials	Optics Express, 15(21), pp. 14219-14227, 2007	BibTeX DOI
Christian Meyer, Uwe Prüfert, Fredi Tröltzsch	On two numerical methods for state-constrained elliptic control problems	Optimization Methods and Software, 22(6), pp. 871-899, 2007	BibTeX
Anton Schiela	Optimality Conditions for Convex State Constrained Optimal Control Problems with Discontinuous States	ZIB-Report 07-35	PDF BibTeX URN
Peter Deuflhard	Painters, Murderers, Mathematicians	Mathematics and Culture in Europe. Mathematics in Art, Technology, Cinema, and Theatre, Springer-Verlag, pp. 141-152, 2007	BibTeX
Susanne Gerber	Perfusionsmodellierung in menschlichen Tumoren	Master's thesis, Freie Universität Berlin, 2007	PDF BibTeX URN
S. Dahlke, Peter Maass, G. Teschke	Reconstruction of Reflectivity Densities by Wavelet Transforms	Technical Report 01-10, ISSN 1435-7968, 2007	BibTeX
A. Gürler, Sebastian Moll, Marcus Weber, Holger Meyer, Frank Cordes	Selection and flexible optimization of binding modes from conformation ensembles	Biosystems, 2007	BibTeX
T. Pollok	Separabilität von Helmholtz- und Maxwellgleichungen über unbeschränkten heterogenen Gebieten	Master's thesis, Freie Universität Berlin, 2007	BibTeX
S. Dahlke, Gitta Kutyniok, G. Steidl, G. Teschke	Shearlet coorbit spaces and associated Banach frames	Bericht Nr. 2007-5, Philipps-Universität Marburg, 2007	BibTeX
A. Wix, Karlheinz Schaber, O. Ofenloch, Rainald Ehrig, Peter Deuflhard	Simulation of Aerosol Formation in Gas-Liquid Contact Devices	Chem. Eng. Comm., Vol.194, pp. 565-577, 2007	BibTeX
O. Scharkoi	Simulation von Opioiden unter Hinzunahme von Temperatur und pH-Wert	Bachelor's thesis, Freie Universität Berlin, Bioinformatik, 2007	BibTeX
Konstantin Fackeldey, Rolf Krause	Solving Frictional Contact Problems with Multigrid Efficiency	Proc.of the 16th International Conference on Domain Decomposition Methods, Olof Widlund (Ed.), pp. 547-554, Vol.50, Lecture Notes in Computational Science and Engineering, 2007	BibTeX
Marcus Weber, Susanna Kube, Lionel Walter, Peter Deuflhard	Stable Computation of Probability Densities of Metastable Dynamical Systems	SIAM J. Multiscale Model. Simul., 6(2), pp. 396-416, 2007	BibTeX
Karsten Andrae, P.-G. Reinhard, E. Suraud	Systematics of spin-polarized small Na clusters	Annals of the European Academy of Science, 2007	BibTeX arXiv
S. Dahlke, Dirk A. Lorenz, Peter Maass, C. Sagiv, G. Teschke	The Canonical Coherent states associated with Quotients of the Affine Weyl–Heisenberg Group	to appear, 2007	BibTeX
Frank Scholze, Christian Laubis, Uwe Dersch, Jan Pomplun, Sven Burger, Frank Schmidt	The influence of line edge roughness and CD uniformity on EUV scatterometry for CD characterization of EUV masks	Modeling Aspects in Optical Metrology, Harald Bosse (Ed.), p. 66171A, Vol.6617, 2007	BibTeX
Achim Schädle, Daniel Ruprecht, Frank Schmidt	Transparent boundary conditions - the pole condition approach	Proceedings of Waves 2007, N. Biggs et.al. (Ed.), pp. 301-303, 2007	BibTeX
C. Förster, Arnd B. E. Brauer, J. Fürste, C. Betzel, Marcus Weber, Frank Cordes, V. Erdmann	Visualization of the tRNA(Ser) acceptor step binding site in the seryl-tRNA synthetase	BBRC, 362(2), pp. 415-418, 2007	BibTeX
R. Kellermann, Marcus Weber, Alexander Bujotzek	Vom Dietrich zum Sicherheitsschlüssel – Mathematiker des Matheon simulieren neuen Wirkstoff für die Diabetes-Behandlung	DFG-Forschungszentrum Matheon, 2007	BibTeX
Konstantin Fackeldey, Rolf Krause	Weak coupling in function space	Proc. Appl. Math. Mech., p. 2020113pp, 7(1), 2007	BibTeX
2006
G. Teschke, U. Görsdorf, P. Körner, D. Trede	A New Approach for Target Classification in Ka-Band Radar Data	Proc. ERAD Barcelona, 2006	BibTeX
Rainald Ehrig, William R. Taylor, G. Duda, Markus O. Heller	A New Approach for the Determination of Joint Axes	Proceedings of the 52th Annual Meeting of the Orthopedic Society, 2006	BibTeX
R. Ramlau, G. Teschke	A Projection Iteration for Nonlinear Operator Equations with Sparsity Constraints	Numerische Mathematik, Vol.104, pp. 177-203, 2006	BibTeX
Rainald Ehrig, William R. Taylor, G. Duda, Markus O. Heller	A Survey for Formal Methods for Determining the Centre of Ball Joints	Journal of Biomechanics, pp. 2798-2809, 2006	BibTeX
Nelson Faustino, U. Kaehler, G. Teschke	A Wavelet Galerkin Scheme for the Navier Stokes Equations	under review, 2006	BibTeX
Lin Zschiedrich, Roland Klose, Achim Schädle, Frank Schmidt	A new finite element realization of the Perfectly Matched Layer Method for Helmholtz scattering problems on polygonal domains in 2D	J. Comput. Appl. Math., Vol.188, pp. 12-32, 2006 (preprint available as ZIB-Report 03-44)	PDF (ZIB-Report) BibTeX DOI
G. Teschke	A new frame-based statistical strategy for bird migration clutter removal in wind profiler radar data	preprint, 2006	BibTeX
V. Lehmann, G. Teschke	A new intermittent clutter filtering algorithm for radar wind profiler	Proc. ISTP Boulder, 2006	BibTeX
Maria Lopez-Fernandez, Cesar Palencia, Achim Schädle	A spectral order method for inverting sectorial Laplace transforms	SIAM J. Numer. Anal., 44(3), pp. 1332-1350, 2006 (preprint available as ZIB-Report 05-26)	PDF (ZIB-Report) BibTeX DOI
Alexander Riemer	Accuracy, Stability, Convergence of Rigorous Thermodynamic Sampling Methods	Master's thesis, 2006	PDF BibTeX URN
Alexander Riemer	Accuracy, stability, convergence of rigorous thermodynamic sampling methods	Master's thesis, Freie Universität Berlin, department of bioinformatics, 2006	BibTeX
Sven Burger, Roland Klose, Achim Schädle, Frank Schmidt, Lin Zschiedrich	Adaptive FEM solver for the computation of electromagnetic eigenmodes in 3D photonic crystal structures	Scientific Computing in Electrical Engineering, Springer Verlag, pp. 169-175, 2006	BibTeX DOI
Piero Colli Franzone, Peter Deuflhard, Bodo Erdmann, Jens Lang, Luca Franco Pavarino	Adaptivity in Space and Time for Reaction-Diffusion Systems in Electrocardiology	SIAM J. Sc. Comp., Vol.28, pp. 942-962, 2006 (preprint available as ZIB-Report 05-30)	PDF (ZIB-Report) BibTeX
Sven Burger, Achim Schädle, Lin Zschiedrich, Frank Schmidt	Advanced FEM Analysis of Nano-Optical Devices	Nanophotonics, David L. Andrews, Jean-Michel Nunzi, Andreas Ostendorf (Eds.), pp. 72-82, Vol.6195, 2006	BibTeX DOI
Sven Burger, Lin Zschiedrich, Achim Schädle, Roland Klose, Benjamin Kettner, Jan Pomplun, T. Pollok, Frank Schmidt	Advanced FEM Analysis of Nano-Optical Devices	Proc. Symposium on Photonics Technologies for the 7th Framework Programme, 2006	BibTeX
Lin Zschiedrich, Sven Burger, Benjamin Kettner, Frank Schmidt	Advanced Finite Element Method for Nano-Resonators	Proc. SPIE, p. 611515, Vol.6115, 2006	BibTeX DOI arXiv
Marcus Weber, Wasinee Rungsarityotin, Alexander Schliep	An Indicator for the Number of Clusters	From Data and Information Analysis to Knowledge Engineering, Myra Spiliopoulou, Rudolf Kruse, Christian Borgelt, Andreas Nürnberger, Wolfgang Gaul (Eds.), Springer Berlin Heidelberg, pp. 103-110, 2006	BibTeX
Johanna Gellermann, Mirko Weihrauch, C. Cho, Waldemar Wlodarczyk, Horst Fähling, Roland Felix, Volker Budach, Martin Weiser, Johanna Nadobny, Peter Wust	Comparison of MR-thermography and planning calculations in phantoms	Medical Physics, Vol.33, pp. 3912-3920, 2006	BibTeX
William R. Taylor, Christian König, A. Speirs, Rainald Ehrig, G. Duda, Markus O. Heller	Die medio-laterale Kraftverteilung im Schafsknie	Deutscher Kongress für Orthpädie und Unfallchirurgie, Berlin, 2006	BibTeX
Lin Zschiedrich, Reinhard März, Sven Burger, Frank Schmidt	Efficient 3D Finite Element Simulation of Fiber-Chip Coupling	Integrated Photonics Research and Applications/Nanophotonics, p. ITuF1, 2006	BibTeX DOI
Ronald Holzlöhner, Sven Burger, P. Roberts, Jan Pomplun	Efficient optimization of hollow-core photonic crystal fiber design using the finite-element method	J. Eur. Opt. Soc.-Rapid, Vol.1, p. 06011, 2006	BibTeX DOI
Benjamin Kettner	Ein Algorithmus zur prismatoidalen Diskretisierung von unbeschränkten Außenräumen in 2D und 3D unter Einhaltung von Nebenbedingungen	Master's thesis, Freie Universität Berlin, 2006	BibTeX
M. Holschneider, G. Teschke	Existence and Computation of Optimally Localized Coherent States	Journal of Mathematical Physics, Vol.47, p. 123503, 2006	BibTeX
Achim Schädle, María López-Fernández, Christian Lubich	Fast and oblivious convolution quadrature	SIAM J. Sci. Comput., 28(2), pp. 421-438, 2006 (preprint available as ZIB-Report 05-09)	PDF (ZIB-Report) BibTeX DOI
G. Teschke	Frames, Sparsity, and Nonlinear InverseProblems	Oberwolfach Reports, 2006	BibTeX
Peter Deuflhard, Martin Weiser, Stefan Zachow	Mathematics in Facial Surgery	AMS Notices, 53(9), pp. 1012-1016, 2006	BibTeX
Marcus Weber	Meshless Methods in Confirmation Dynamics	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, M. Dellnitz (Advisors), 2006	PDF BibTeX URN
Marcus Weber	Meshless Methods in Conformation Dynamics	Doctoral thesis, Freie Universität Berlin, department of mathematics, 2006	BibTeX
D. Michaelis, Christoph Wächter, Sven Burger, Lin Zschiedrich, Andreas Bräuer	Micro-optically assisted high index waveguide coupling	Appl. Opt., Vol.45, pp. 1831-1838, 2006	BibTeX DOI
Peter Deuflhard	Newton Methods for Nonlinear Problems. Affine Invariance and Adaptive Algorithms	Springer, 2006	BibTeX
G. Dolling, M. Wegener, Achim Schädle, Sven Burger, S. Linden	Observation of magnetization waves in negative-index photonic metamaterials	Appl. Phys. Lett., Vol.89, p. 231118, 2006	BibTeX DOI
S. Linden, Christian Enkrich, G. Dolling, M. Klein, J. Zhou, T. Koschny, C. Soukoulis, Sven Burger, Frank Schmidt, M. Wegener	Photonic metamaterials: Magnetism at Optical Frequencies	IEEE Journal of Selected Topics in Quantum Electronics, 12(6), pp. 1097-1105, 2006	BibTeX DOI
Karsten Andrae, P. Dinh, P.-G. Reinhard, E. Suraud	Pump and probe analysis of metal cluster dynamics	Computational Materials Science, 35(3), pp. 169-173, 2006	BibTeX DOI
Jan Pomplun, Sven Burger, Frank Schmidt, Lin Zschiedrich, Frank Scholze	Rigorous FEM-Simulation of EUV-Masks: Influence of shape and material parameters	Photomask Technology, P. Martin, R. Naber (Eds.), p. 63493D, Vol.6349, 2006	BibTeX DOI
Jan Pomplun	Rigorous FEM-Simulation of Maxwell’s Equations for EUV-Lithography	Master's thesis, Technische Universität Berlin, 2006	BibTeX
Sven Burger, Roderick Köhle, Lin Zschiedrich, H. Nguyen, Frank Schmidt, Reinhard März, Christoph Nölscher	Rigorous Simulation of 3D Masks	Photomask Technology, P. Martin, R. Naber (Eds.), p. 63494Z, Vol.6349, 2006	BibTeX
Tobias Gänzler, S. Volkwein, Martin Weiser	SQP methods for parameter identification problems arising in hyperthermia	Optim. Methods Softw., 21(6), pp. 869-887, 2006	BibTeX
A. Gürler	Selection and flexible optimization of binding modes from conformation ensembles.	Master's thesis, Freie Universität Berlin, department of bioinformatics, 2006	BibTeX
Anton Schiela	The Control Reduced Interior Point Method. A Function Space Oriented Algorithmic Approach	Doctoral thesis, FU Berlin, 2006	BibTeX
William R. Taylor, Rainald Ehrig, G. Duda, Markus O. Heller	The Symmetrical Axis of Rotation Approach (SARA) for Determination of Joint Axes in Clinical Gait Analysis	1st Joint ESMAC-GCMAS Meeting, Amsterdam, 2006	BibTeX
S. Dahlke, Gitta Kutyniok, Peter Maass, C. Sagiv, H.-G. Stark, G. Teschke	The Uncertainty Principle Associated with the Continuous Shearlet Transform	to appear, 2006	BibTeX
William R. Taylor, Rainald Ehrig, G. Duda, Markus O. Heller	The determination of joint axes	5. World Congress of Biomechanics, Munich, Journal of Biomechanics, pp. S571-S572, 2006	BibTeX
William R. Taylor, Christian König, A. Speirs, Rainald Ehrig, G. Duda, Markus O. Heller	The medio-lateral force distribution in the sheep knee during walking	5. World Congress of Biomechanics, Munich, Journal of Biomechanics, p. S491, 2006	BibTeX
Wilhelm Huisinga, R. Telgmann, Michael Wulkow	The virtual lab approach to pharmacokinetic	Drug Discov Today, Vol.11, pp. 800-805, 2006	BibTeX
William R. Taylor, Rainald Ehrig, Markus O. Heller, H. Schell, P. Seebeck, G. Duda	Tibio-femoral Joint Contact Forces in Sheep	Journal of Biomechanics, pp. 791-798, 2006	BibTeX
M. Rätsch, S. Romdhani, G. Teschke, T. Vetter	Wavelet Frame Accelerated Reduced Support Vector Machine	to appaer in:, 2006	BibTeX
2005
X. Reynhout, J. Meuldijk, B. Drinkenburg, P. Iedema, Michael Wulkow	A Novel Method to Model Emulsion Polymerization Kinetics	Polymer-Plastics Tech. Eng., 44(4), pp. 707-740, 2005	BibTeX
Roland Klose, Sven Burger, Frank Schmidt, Lin Zschiedrich	A multilevel method for the computation of eigenmodes in 3D photonic crystals	Proceedings of the 5th International Conference on Numerical Simulation of Optoelectronic Devices, pp. 61-62, 2005	BibTeX DOI
A. Muschinski, V. Lehmann, L. Justen, G. Teschke	Advanced Radar Wind Profiling	Meteorologische Zeitschrift, 5(14), pp. 609-626, 2005	BibTeX
I. Sim	Analysis und Numerik der Resonanzen des Schrödinger-Operators in 1D	Master's thesis, U Hamburg, 2005	BibTeX
William R. Taylor, Rainald Ehrig, Markus O. Heller, H. Schell, P. Seebeck, G. Duda	Animal Models for Knee Injury Frequently Underestimate the Mechanical Conditions of the Clinical Situation	Proceedings of the 51th Annual Meeting of the Orthopedic Society, 2005	BibTeX
Martin Weiser, Anton Schiela, Peter Deuflhard	Asymptotic Mesh Independence of Newton’s Method Revisited	SIAM J. Num. Anal., 42(5), pp. 1830-1845, 2005 (preprint available as ZIB-Report 03-13)	PDF (ZIB-Report) BibTeX
Sven Burger, Roderick Köhle, Lin Zschiedrich, W. Gao, Frank Schmidt, Reinhard März, Christoph Nölscher	Benchmark of FEM, Waveguide and FDTD Algorithms for Rigorous Mask Simulation	Photomask Technology, J. Weed, P. Martin (Eds.), pp. 378-389, Vol.5992, 2005	BibTeX arXiv DOI
C. Kober, Bodo Erdmann, Christian Hellmich, Robert Sader, Hans-Florian Zeilhofer	Consideration of Bone Inhomogeneity and Anisotropy in Deformation Analysis of a Human Mandible	Proc. of BMT2005, 39th Annual Congress of the German Society of Biomedical Engineering, Nuremberg, Germany, U. Boenick, A. Bolz (Eds.), pp. 814-815, Vol.1, 2005	BibTeX
G. Teschke	Construction of Generalized Uncertainty Principles and Wavelets in Bessel Potential Spaces	International Journal of Wavelets, Multiresolution and Information Processing, 3(2), pp. 189-209, 2005	BibTeX
Christian-Ulrich Schmidt, Markus Busch, Dieter Lilge, Michael Wulkow	Detailed Molecular Structure Modeling – A Path Forward to Designing Application Properties of ldPE	Macromolecular Materials and Engineering, Vol.290, p. 404, 2005	BibTeX
Lin Zschiedrich, Sven Burger, Achim Schädle, Frank Schmidt	Domain decomposition method for electromagnetic scattering problems: application to EUV lithography	Proceedings of the 5th International Conference on Numerical Simulation of Optoelectronic devices, pp. 55-56, 2005	BibTeX DOI
Sven Burger, Roland Klose, Achim Schädle, Frank Schmidt, Lin Zschiedrich	FEM modelling of 3D photonic crystals and photonic crystal waveguides	Integrated Optics : Devices, Materials and Technologies IX, Y. Sidorin, Christoph Wächter (Eds.), pp. 164-173, Vol.5728, 2005	BibTeX DOI
Maria López-Fernández, Christian Lubich, Cesar Palencia, Achim Schädle	Fast Runge-Kutta approximation of inhomogeneous parabolic equations	Numer. Math., Vol.102, pp. 277-291, 2005 (preprint available as )	BibTeX DOI
Frank Schmidt, Sven Burger, Achim Schädle, Roland Klose	Finite element methods for optical device design	Proceedings of the 5th International Conference on Numerical Simulation of Optoelectronic devices, pp. 57-58, 2005	BibTeX DOI
S. Dahlke, M. Fornasier, H. Rauhut, G. Steidl, G. Teschke	Generalized Coorbit Theory, Banach Frames, and the Relations to α–Modulation Spaces	under review, 2005	BibTeX
C. Kober, Bodo Erdmann, Christian Hellmich, M. Geiger, Robert Sader, Hans-Florian Zeilhofer	How does the periodontal ligament influence overall stress/strain profiles of a partially edentulous mandible?	Proc. of 8th Int. Conference on Biological Mechanisms of Tooth Eruption, Resorption and Movement, Phuket, Thailand, Z. Davidovitch, J. Mah, S. Suthanarak (Eds.), 2005	BibTeX
Martin Weiser	Interior point methods in function space	SIAM J. Control Optimization, 44(5), pp. 1766-1786, 2005 (preprint available as ZIB-Report 03-35)	PDF (ZIB-Report) BibTeX
Lin Zschiedrich, Sven Burger, Roland Klose, Achim Schädle, Frank Schmidt	JCMmode: an adaptive finite element solver for the computation of leaky modes	Integrated Optics: Devices, Materials, and Technologies IX, Y. Sidorin, Christoph Wächter (Eds.), pp. 192-202, Vol.5728, 2005	BibTeX DOI
Daniel Ruprecht	Konstruktion transparenter Randbedingungen für die Wellengleichung mit Hilfe der Polbedingung	Master's thesis, Freie Universität Berlin, 2005	BibTeX
Christian Enkrich, M. Wegener, S. Linden, Sven Burger, Lin Zschiedrich, Frank Schmidt, C. Zhou, T. Koschny, C. Soukoulis	Magnetic metamaterials at telecommunication and visible frequencies	Phys. Rev. Lett., Vol.95, p. 203901, 2005	BibTeX DOI arXiv
G. Teschke	Multi-Frames in Thresholding Iterations for Nonlinear Operator Equations with Mixed Sparsity Constraints	DFG-SPP-1114 preprint 131, 2005	BibTeX
Markus O. Heller, Georg Duda, Rainald Ehrig, H. Schell, P. Seebeck, William R. Taylor	Muskuloskeletale Belastungen im Schafshinterlauf	Materialwissenschaft und Werkstofftechnik, pp. 775-780, 2005	BibTeX
Sven Burger, Lin Zschiedrich, Roland Klose, Achim Schädle, Frank Schmidt, Christian Enkrich, S. Linden, M. Wegener, C. Soukoulis	Numerical Investigation of Light Scattering off Split-Ring Resonators	Metamaterials, T. Szoplik, E. Özbay, C. Soukoulis, N. Zheludev (Eds.), pp. 18-26, Vol.5955, 2005	BibTeX DOI
Ch. Marwitz	Numerische Berechnung von modifizierten Blochmoden in der Bandlücke periodischer Strukturen	Master's thesis, Technische Universität Berlin, 2005	BibTeX
William R. Taylor, Rainald Ehrig, Markus O. Heller, H. Schell, P. Klein, G. Duda	On the Influence of Soft Tissue Coverage in the Determination of Bone Kinematics using Bone Markers	Journal of Orthopedic Research, pp. 726-734, 2005	BibTeX
G. Teschke	Operator Equations, Mixed Constraints, Frame Based Iterative Concepts and Application	Habilitation thesis, Bremen, 2005	BibTeX
T. Kalkbrenner, U. Hakanson, Achim Schädle, Sven Burger, C. Henkel, V. Sandoghdar	Optical microscopy using the spectral modifications of a nano-antenna	Phys. Rev. Lett., Vol.95, p. 200801, 2005	BibTeX DOI
M. Rätsch, S. Romdhani, G. Teschke, T. Vetter	Overcomplete Wavelet Approximation of a Support Vector Machine for Efficient Classification	Springer Lecture Notes in Computer Science, p. 351ff, 2005	BibTeX
Marcus Weber, Susanna Kube	Robust Perron Cluster Analysis for Various Applications in Computational Life Science	Computational Life Sciences, pp. 57-66, 2005	BibTeX
Peter Deuflhard, Marcus Weber	Robust Perron Cluster Analysis in Conformation Dynamics	Lin. Alg. Appl. – Special Issue on Matrices and Mathematical Biology, Elsevier Journals: Germany, pp. 161-184, 2005 (preprint available as )	BibTeX
H. Horn, Michael Wulkow	Simulation von Wachstum und Abtrag der Biomasse – Eine exemplarische Betrachtung für eine 2D-Modellierung	Chem. Ing. Technik, 77(4), pp. 418-424, 2005	BibTeX
Stefan Zachow, Martin Weiser, Hans-Christian Hege, Peter Deuflhard	Soft Tissue Prediction in Computer Assisted Maxillofacial Surgery Planning	Biomechanics Applied to Computer Assisted Surgery, Y. Payan (Ed.), Research Signpost, pp. 277-298, 2005	PDF BibTeX
C. Kober, Bodo Erdmann, Christian Hellmich, Robert Sader, Hans-Florian Zeilhofer	The Influence of the Periodontal Ligament on Overall Stress/Strain Profiles of a Human Mandible	Proc. of 23rd CADFEM Users’ Meeting, Int. Congress on FEM Technology, Biomechanics, Grafing CADFEM GmbH (Ed.), pp. 1-10, 2005	BibTeX
William R. Taylor, J.-P. Kassi, J. Schwarzkopf, Rainald Ehrig, H. Schell, G. Duda	The Profile of Mechanical Loading is Independent of Fracture Fixation Principle	Proceedings of the 51th Annual Meeting of the Orthopedic Society, 2005	BibTeX
R. Ramlau, G. Teschke	Tikhonov Replacement Functionals for Iteratively Solving Nonlinear Operator Equations	InverseProblems, Vol.21, pp. 1571-1592, 2005	BibTeX
Markus O. Heller, G. Duda, Christian König, William R. Taylor, Rainald Ehrig, S. Hinterwimmer, H. Graichen	Validation of a New Model of Human Knee Kinematics against in Vivo Data under Physiologic Neuromuscular Activation Patterns	Proceedings of the 51th Annual Meeting of the Orthopedic Society, 2005	BibTeX
I. Daubechies, G. Teschke	Variational image restoration by means of wavelets	Applied and Computational Harmonic Analysis, 19(1), pp. 1-16, 2005	BibTeX
2004
Hans Lamecker, Martin Seebaß, Hans-Christian Hege, Peter Deuflhard	A 3d statistical shape model of the pelvic bone for segmentation	Proc. SPIE Medical Imaging 2004, J. Fitzpatrick, Milan Sonka (Eds.), pp. 1341-1351, Vol.5370, 2004	BibTeX
P. Cerejeiras, S. Dahlke, M. Soares, U. Kaehler, M. Lindemann, G. Teschke, M. Zhariy	A Wavelet Based Numerical Method for Nonlinear Elliptic Partial Differential Equations	IKM Proceedings, 2004	BibTeX
M. Soares, G. Teschke, M. Zhariy	A Wavelet Regularization for Nonlinear Diffusion Equations	Technical Report 04-12, ISSN 1435-7968, 2004	BibTeX
P. Cerejeiras, S. Dahlke, M. Soares, U. Kaehler, M. Lindemann, G. Teschke, M. Zhariy	A Wavelet-Galerkin Scheme for Nonlinear Elliptic Partial Differential Equations	in preparation, 2004	BibTeX
Evgeny Gladilin	A contour based approach for invariant shape description	SPIE Medical Imaging Conference, pp. 1282-1291, Vol.5370, 2004	BibTeX
Kristian Bredies, Dirk A. Lorenz, Peter Maass, G. Teschke	A partial differential equation for continuous non-linear shrinkage filtering and its application for analyzing MMG data	Proc. SPIE Vol. 5266, p. 84-93, Wavelet Applications in Industrial Processing; Frederic Truchetet; Ed., 2004	BibTeX
Stefan Zachow, Thomas Hierl, Bodo Erdmann	A quantitative evaluation of 3D soft tissue prediction in maxillofacial surgery planning	Proc. 3. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboter-assistierte Chirurgie e.V., 2004	PDF BibTeX
C. Kober, Bodo Erdmann, Jens Lang, Robert Sader, Hans-Florian Zeilhofer	Adaptive Finite Element Simulation of the Human Mandible Using a New Physiological Model of the Masticatory Muscles	Proc. of 75th Annual Meeting of the GAMM, pp. 332-333, 4(1), PAMM, 2004 (preprint available as ZIB-Report 04-16)	PDF (ZIB-Report) BibTeX
Karlheinz Schaber, Oliver Ofenloch, Rainald Ehrig, Peter Deuflhard	Aerosolbildung in Gas/Flüssigkeits-Kontaktapparaten - Modellierungsstrategien und Simulation	Chemie Ingenieur Technik, 76(9), pp. 1358-1359, 2004	BibTeX
C. Kober, Bodo Erdmann, Christian Hellmich, Robert Sader, Hans-Florian Zeilhofer	Anisotropic Simulation of the Human Mandible	Proc. of 17th ASCE Engineering Mechanics Conference, 2004 (preprint available as ZIB-Report 04-12)	PDF (ZIB-Report) BibTeX
William R. Taylor, Rainald Ehrig, Markus O. Heller, H. Schell, G. Duda	Can Skin Markers Determine the Kinematics of Underlying Bones?	Proceedings of the 50th Annual Meeting of the Orthopedic Society, 2004	BibTeX
S. Dahlke, G. Steidl, G. Teschke	Coorbit Spaces and Banach Frames on Homogeneous Spaces with Applications to Analyzing Functions on Spheres	Adv. Comput.Math., 1-2(21), pp. 147-180, 2004	BibTeX
Karsten Andrae, P.-G. Reinhard, E. Suraud	Crossed Beam Pump and Probe Dynamics in Metal Clusters	Phys. Rev. Lett., 92(17), p. 173402, 2004	BibTeX DOI
Sven Burger, Roland Klose, Reinhard März, Achim Schädle, Frank Schmidt, Lin Zschiedrich	Efficient Finite Element Methods for the Design of Microoptical Components	Proc. Microoptics Conf. 2004, 2004	BibTeX
Martin Weiser, Anton Schiela	Function space interior point methods for PDE constrained optimization	PAMM, 4(1), pp. 43-46, 2004 (preprint available as ZIB-Report 04-27)	PDF (ZIB-Report) BibTeX
Reinhard März, Sven Burger, A. Forchel, H. Heidrich, O. Hess, D. Michaelis, K. Wandel, R. Wehrspohn	High-contrast planar photonic crystals	Nanophotonics for Communication, M. Lipson (Ed.), pp. 68-81, Vol.5597, 2004	BibTeX DOI
Michael Wulkow, Markus Busch, Thomas P. Davis, Christopher Barner-Kowollik	Implementing the Reversible Addition Fragmentation Chain Transfer (RAFT) Process in Predici.	Journal of Polymer Science, Vol.42, p. 1441, 2004	BibTeX
S. Dahlke, Peter Maass, G. Teschke	Interpolating Scaling Functions with Duals	Journal of Computational Analysis and Applications, 1(6), pp. 19-29, 2004	BibTeX
Peter Deuflhard, Christof Schütte	Molecular Conformation Dynamics and Computational Drug Design	Applied Mathematics Entering the 21st Century, James Hill, Ross Moore (Eds.), pp. 91-119, proceedings in Applied Mathematics, 2004 (preprint available as )	BibTeX
Reinhard Hochmuth, Peter Deuflhard	Multiscale Analysis for the Bio-Heat-Transfer Equation - The Nonisolated Case	Mathematical Models and Methods in Applied Sciences (M$^3$AS), 14(11), pp. 1621-1634, 2004	BibTeX
Peter Deuflhard, Reinhard Hochmuth	Multiscale analysis of thermoregulation in the human microvascular system	Math. Methods Appl. Sci., 27(8), pp. 971-989, 2004 (preprint available as ZIB-Report 02-31)	PDF (ZIB-Report) BibTeX
Peter Deuflhard	Newton Methods for Nonlinear Problems. Affine Invariance and Adaptive Algorithms	Springer, 2004	BibTeX
S. Volkwein, Martin Weiser	Optimality Conditions for a Constrained Parameter Identification Problem in Hyperthermia	2004	BibTeX
Reinhard März, Sven Burger, S. Golka, A. Forchel, Christian Herrmann, C. Jamois, D. Michaelis, K. Wandel	Planar High Index-Contrast Photonic Crystals for Telecom Applications	Photonic Crystals - Advances in Design, Fabrication and Characterization, Wiley-VCH, pp. 308-329, 2004	BibTeX DOI
Frank Schmidt	Pole Condition: A new Approach to Solve Scattering Problems	Oberwolfach Report, 1(1), pp. 615-617, 2004	BibTeX
S. Dahlke, Peter Maass, G. Teschke	Reconstruction of Reflectivity Densities in a Narrowband Regime	IEEE Transactions on Antennas and Propagation, 52(6), pp. 1603-1606, 2004	BibTeX
R. Ramlau, G. Teschke	Regularization of Sobolev Embedding Operators and Applications Part I	Sampling Theory in Signal and Image Processing, 3(2), pp. 175-196, 2004	BibTeX
R. Ramlau, G. Teschke	Regularization of Sobolev Embedding Operators and Applications Part II	Sampling Theory in Signal and Image Processing, 3(3), pp. 225-246, 2004	BibTeX
Martin Schlegel, Wolfgang Marquardt, Rainald Ehrig, Ulrich Nowak	Sensitivity analysis of linearly-implicit differential-algebraic systems by one-step extrapolation	Applied Numerical Mathematics, pp. 83-102, 2004 (preprint available as )	BibTeX
C. Kober, Bodo Erdmann, Jens Lang, Robert Sader, Hans-Florian Zeilhofer	Sensitivity of the Temporomandibular Joint Capsule for the Structural Behaviour of the Human Mandible	Proc. BMT 2004, pp. 372-373, Vol.49-2, Biomedizinische Technik, 2004	BibTeX
Hans Lamecker, Martin Seebass, Thomas Lange, Hans-Christian Hege, Peter Deuflhard	Visualization of the variability of 3D statistical shape models by animation	Proc. Medicine Meets Virtual Reality, J. Westwood (Ed.), pp. 190-196, Vol.98, Studies in Health Technologies and Informatics, 2004	BibTeX
L. Justen, G. Teschke, V. Lehmann	Wavelet-based methods for clutter removal from radar wind profiler data	Proc. SPIE Vol. 5266, p. 157-168, Wavelet Applications in Industrial Processing; Frederic Truchetet; Ed., 2004	BibTeX
I. Daubechies, G. Teschke	Wavelet–based image decomposition by variational functionals	Proc. SPIE Vol. 5266, p. 94-105, Wavelet Applications in Industrial Processing; Frederic Truchetet; Ed., 2004	BibTeX
S. Dahlke, G. Steidl, G. Teschke	Weighted Coorbit Spaces and Banach Frames on Homogeneous Spaces	Journal of Fourier Analysis and Applications, 5(10), pp. 507-539, 2004	BibTeX
J.-P. Kassi, William R. Taylor, J. Schwarzkopf, H. Schell, G. Duda, Rainald Ehrig	Wie sind Osteosynthesesysteme und Defektzonen in vivo belastet?	68. Jahrestagung der Deutschen Gesellschaft für Unfallchirurgie in Verbindung mit dem Deutschen Orthopädenkongress, 2004	BibTeX
Peter Deuflhard	bookreview	Annual Report DMV, Vol.106, p. 43, 2004	BibTeX
2003
Johanna Nadobny, Dennis Sullivan, Waldemar Wlodarczyk, Peter Deuflhard, Peter Wust	A 3-D Tensor FDTD-Formulation for Treatment of Sloped Interfaces in Electrically Inhomogeneous Media	IEEE Transactions on Antennas and Propagation, 51(8), pp. 1760-1770, 2003	BibTeX
Peter Deuflhard	A Comparison of Related Concepts in Computational Chemistry and Mathematics	Chemisty and Mathematics, pp. 51-66, 2003 (preprint available as ZIB-Report 02-46)	PDF (ZIB-Report) BibTeX
Johanna Nadobny, R. Pontalti, Dennis Sullivan, Waldemar Wlodarczyk, A. Vaccari, Peter Deuflhard, Peter Wust	A Thin-Rod Approximation for the Improved Modeling of Bare and Insulated Cylindrical Antennas Using the FDTD Method	IEEE Transactions on Antennas and Propagation, 51(8), pp. 1780-1796, 2003	BibTeX
Sven Burger, Frank Schmidt, Lin Zschiedrich	A fast and efficient Finite-Element Solver for 2D and 3D Photonic Band-Gap Problems	Dig. LEOS/IEEE 2003 Summer Topicals, p. 75, 2003	BibTeX DOI
H. Reuter, G. Krause, Michael Wulkow, A. Mönig, H. Horn	A water quality management tool for river basins	Wat. Sci. Techn., 48(10), pp. 47-53, 2003	BibTeX
Frank Schmidt, T. Friese, Lin Zschiedrich, Peter Deuflhard	Adaptive Multigrid Methods for the Vectorial Maxwell Eigenvalue Problem for Optical Waveguide Design	Mathematics - Key Technology for the Future, Springer, pp. 270-292, 2003 (preprint available as )	BibTeX
C. Kober, Robert Sader, Hans-Florian Zeilhofer, Peter Deuflhard	An Individual Anisotropic and Inhomogeneous Material Description of the Human Mandible	Mathematical Modelling and Computing in Biology and Medicine, Vincenzo Capasso (Ed.), pp. 103-109, 2003	BibTeX
S. Dahlke, V. Lehmann, G. Teschke	Applications of Wavelet Methods to the Analysis of Meteorological Radar Data - An Overview	(invited paper) Arabian Journal of Science and Engineering, 28(1C), pp. 3-44, 2003	BibTeX
C. Kober, Bodo Erdmann, Robert Sader, Hans-Florian Zeilhofer	Belastungssimulation beim menschlichen Biss im Vergleich mit der Dichtestruktur im Unterkieferknochen	Biomedizinische Technik, 48(Ergänzungsband 1), pp. 268-269, 2003	BibTeX
Evgeny Gladilin	Biomechanical Modeling of Soft Tissue and Facial Expressions for Craniofacial Surgery Planning	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2003	BibTeX
G. Sreenivasa, Johanna Gellermann, Johanna Nadobny, P. Schlag, Peter Deuflhard, Roland Felix, Peter Wust	Clinical Use of the Hyperthermia Treatment Planning System Hyperplan to Predict Effectiveness and Toxicity	Int. J. Oncology Biol. Phys., 55(2), pp. 407-419, 2003	BibTeX
Jens Lang, Bodo Erdmann, Cornelia Kober, Peter Deuflhard, Robert Sader, Hans-Florian Zeilhofer	Effiziente und zuverlässige Finite-Elemente-Methoden zur Simulation des menschlichen Unterkiefers	Berichte des IZWR - Interdisziplinäres Zentrum für Wissenschaftliches Rechnen, Walter Alt, Martin Hermann (Eds.), Universität Jena: Germany, pp. 49-57, 2003	BibTeX
Mohammad-Hassan Farshbaf-Shaker	Ein neues Verfahren zur Lösung des Streuproblems der Maxwell-Gleichungen	Master's thesis, 2003	PDF BibTeX URN
Peter Deuflhard	From Molecular Dynamics to Conformational Dynamics in Drug Design	Trends in Nonlinear Analysis, Markus et al. Kirkilionis (Ed.), Springer Verlag Berlin, pp. 269-288, 2003 (preprint available as ZIB-Report 02-20)	PDF (ZIB-Report) BibTeX
Markus Busch, Michael Wulkow	Modellierung differenzierter mikrostruktureller Eigenschaften	Chem. Ing. Tech., Vol.75, p. 1027, 2003	BibTeX
Ralf Hiptmair, Achim Schädle	Non-reflecting boundary conditions for Maxwell’s equations	Computing, 71(3), 2003	BibTeX
Peter Deuflhard, Andreas Hohmann	Numerical analysis in modern scientific computing. An introduction. 2nd revised ed.	New York, NY: Springer, 2003	BibTeX
Reinhard Hochmuth, Peter Deuflhard	On the thermoregulation in the human microvascular system	PAMM, Vol.3, pp. 378-379, 2003	BibTeX
S. Dahlke, Peter Maass, G. Teschke	Reconstruction of Wideband Reflectivity Densities by Wavelet Transforms	Advances in Computational Mathematics, 2-4(18), pp. 189-209, 2003	BibTeX
C. Kober, Bodo Erdmann, Robert Sader, Hans-Florian Zeilhofer	Simulation of the Human Mandible	Proceedings of 10th Workshop on The Finite Element Method in Biomedical Engineering, Biomechanics and Related Fields, 2003	BibTeX
Thorsten Hohage, Frank Schmidt, Lin Zschiedrich	Solving Time-Harmonic Scattering Problems Based on the Pole Condition I: Theory	SIAM J. Math. Anal., 35(1), pp. 183-210, 2003	BibTeX DOI
Thorsten Hohage, Frank Schmidt, Lin Zschiedrich	Solving Time-Harmonic Scattering Problems Based on the Pole Condition II: Convergence of the PML Method	SIAM J. Math. Anal., 35(3), pp. 547-560, 2003	BibTeX DOI
Markus Busch, M. Müller, Michael Wulkow	The use of Simulation Techniques in Developing Kinetic Models for Polymerizations	Chem. Eng. Technol., Vol.26, p. 1031, 2003	BibTeX
2002
Dietrich Braess, Peter Deuflhard, Konstantin Lipnikov	A Subspace Cascadic Multigrid Method for Mortar Elements	Computing, Vol.69, pp. 205-225, 2002 (preprint available as )	BibTeX
Thorsten Hohage, Frank Schmidt, Lin Zschiedrich	A new method for the solution of scattering problems	Proceedings of the JEE’02 Symposium, Bas Michielsen, Francine Decavèle (Eds.), pp. 251-256, 2002 (preprint available as )	BibTeX
Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege	A nonlinear elastic soft tissue model for craniofacial surgery simulations	ESAIM, Proc., Vol.12, pp. 61-66, 2002	BibTeX DOI
Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege	A nonlinear soft tissue model for craniofacial surgery simulations	Proc. of Modeling and Simulation for Computer-aided Medicine and Surgery (MS4CMS, 2002	BibTeX
Tobias Galliat	Adaptive Multilevel Cluster Analysis by Self-Organizing Box Maps	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2002	PDF BibTeX URN
Karlheinz Schaber, Jens Koerber, O. Ofenloch, Rainald Ehrig, Peter Deuflhard	Aerosol Formation in Gas-Liquid Contact Devices- Nucleation, Growth and Particle Dynamics	Chem.Eng.Sci., Vol.57, pp. 4345-4356, 2002	BibTeX
S. Volkwein, Martin Weiser	Affine Invariant Convergence Analysis for Inexact Augmented Lagrangian SQP Methods	SIAM J. Control Optim., 41(3), pp. 875-899, 2002 (preprint available as ZIB-Report 00-56)	PDF (ZIB-Report) BibTeX
Tobias Galliat, Peter Deuflhard, Rainer Roitzsch, Frank Cordes	Automatic Identification of Metastable Conformations via Self-Organized Neural Networks	Computational Methods for Macromolecules, T. Schlick, H. Gan (Eds.), Lecture Notes in Computational Science and Engineering, 2002 (preprint available as )	BibTeX
Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege	Biomechanical modeling of individual facial emotion expressions	Proc. of Visualization, Imaging, and Image Processing (VIIP), pp. 7-11, 2002	BibTeX
Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege	Biomechanisches Modell zur Abschätzung der individuellen Gesichtsmimik	Proc.of Workshop Bildverarbeitung für die Medizin (BVM), M. Meiler, D. Saupe, F. Krugel, H. Handels, T. Lehmann (Eds.), pp. 25-28, 2002	BibTeX
Bodo Erdmann, C. Kober, Jens Lang, Peter Deuflhard, J. Zeilhofer, Robert Sader	Efficient and Reliable Finite Element Methods for Simulation of the Human Mandible	proceedings of 9th Workshop on The Finite Element Method in Biomedical Engineering, Biomechanics and Related Fields, 2002 (preprint available as ZIB-Report 01-14)	PDF (ZIB-Report) BibTeX
Johanna Nadobny, Horst Fähling, M. Hagmann, P. Turner, Waldemar Wlodarczyk, Johanna Gellermann, Peter Deuflhard, Peter Wust	Experimental and numerical investigation of feed-point parameters in a 3-D hyperthermia applicator using different FDTD models of feed networks	IEEE Trans Biomed Eng, 49(11), pp. 1348-1359, 2002	BibTeX
G. Teschke, M. Zhariy, Peter Maass, K. Sassen	Extraction and Analysis of Structural Features in Cloud Radar and Lidar Data Using Wavelet Based Methods	Proceedings of ERAD, 2002	BibTeX
Alexander Fischer, Christof Schütte, Peter Deuflhard, Frank Cordes	Hierarchical Uncoupling-Coupling of Metastable Conformations	Computational Methods for Macromolecules, T. Schlick, H. Gan (Eds.), pp. 235-259, Lecture Notes in Computational Science and Engineering, 2002 (preprint available as )	BibTeX
Martin Weiser	Linear convergence of an interior point method for linear control constrained optimal control problems	ZIB-Report 02-13	PDF BibTeX URN
Rainald Ehrig, O. Ofenloch, Karlheinz Schaber, Peter Deuflhard	Modelling and Simulation of Aerosol Formation by Heterogeneous Nucleation in Gas-Liquid Contact Devices	Chem.Eng.Sci., 57(7), pp. 1151-1163, 2002 (preprint available as )	BibTeX
Peter Deuflhard, Volker Mehrmann	Numerical analysis and scientific computing in key technologies	pp. 9-19, 2002	BibTeX
Peter Deuflhard, Andreas Hohmann	Numerische Mathematik. I	de Gruyter Lehrbuch. Berlin: de Gruyter, 3, 2002	BibTeX
Peter Deuflhard, Folkmar A. Bornemann	Numerische Mathematik. II	de Gruyter Lehrbuch. Berlin: de Gruyter, 2, 2002	BibTeX
Peter Deuflhard, Folkmar A. Bornemann	Scientific computing with ordinary differential equations. Transl. from the German by Werner C. Rheinboldt	New York, NY: Springer, 2002	BibTeX
Frank Schmidt	Solution of Interior-Exterior Helmholtz-Type Problems Based on the Pole Condition Concept	Doctoral thesis, Free University Berlin, Fachbereich Mathematik und Informatik, 2002 (preprint available as )	BibTeX
2001
David Yevick, T. Friese, Frank Schmidt	A Comparison of Transparent Boundary Conditions for the Fresnel Equation	J. Comput. Phys., 168(2), pp. 433-444, 2001 (preprint available as )	BibTeX
Peter Wust, Horst Fahling, Waldemar Wlodarczyk, Martin Seebass, Johanna Gellermann, Peter Deuflhard, Johanna Nadobny	Antenna arrays in the SIGMA-eye applicator	Med Phys, 28(8), pp. 1793-1805, 2001	BibTeX
S. Kümmel, Karsten Andrae, P.-G. Reinhard	Collectivity in the optical response. of small metal clusters	Applied Physics B, 73(4), pp. 293-297, 2001	BibTeX
Peter Maass, M. Ende, D. Kayser, W. Osten, G. Teschke	Continuous Wavelet Methods in Signal Processing	Invited paper in, W. Osten (Ed.), 2001	BibTeX
K.-D. Hungenberg, C.-C. Chen, F. Zhang, Michael Wulkow, G. Stubbe, U. Nieken	Design of Polymer Processes Using the Coupling of Commercial Simulation Packages Polymers Plus and PREDICI	DECHEMA Monographs, Vol.137, pp. 237-245, 2001	BibTeX
Michael Wulkow, A. Gerstlauer, U. Nieken	Modeling of Crystallization Processes using PARSIVAL	Chem. Eng. Sci., Vol.56, pp. 2575-2588, 2001	BibTeX
H. Horn, T. Neu, Michael Wulkow	Modelling the Structure and Function of Extracellular Polymeric Substances in Biofilms with new Numerical Techniques	Wat. Sci. Techn., 43(´6), pp. 121-127, 2001	BibTeX
Johanna Nadobny, Waldemar Wlodarczyk, Peter Deuflhard, Gerhard Mönich, Peter Wust	Numerical and Experimental Investigations of Different Antenna Types for Deep Body Hyperthermia	Proc. 2001 URSI International Symposium on electromagnetic Theory, M. Stuchly, D. Shannon (Eds.), pp. 473-475, 2001	BibTeX
Christof Schütte, Wilhelm Huisinga, Peter Deuflhard	Transfer operator approach to conformational dynamics in biomolecular systems	Ergodic theory, analysis, and efficient simulation of dynamical systems, Bernold Fiedler (Ed.), Berlin: Springer, pp. 191-223, 2001 (preprint available as )	BibTeX
Frank Schmidt, T. Friese, David Yevick	Transparent Boundary Conditions for Split-Step Padé Approximations of the One-Way Helmholtz equation	J. Comp. Phys, Vol.170, pp. 696-719, 2001	BibTeX
L. Teichmann, U. Liebelt, P. Reuschenbach, Michael Wulkow, H. Horn	Two dimensional simulation of mass transport and nitrification in the river Rhine	Eng. Life Sci., 1(4), pp. 145-149, 2001	BibTeX
V. Lehmann, G. Teschke	Wavelet based methods for improved wind profiler signal processing	Annales Geophysicae, pp. 825-836, 2001	BibTeX
G. Teschke	Waveletkonstruktion über Unschärferelationen und Anwendungen in der Signalanalyse	PhD thesis, Bremen, 2001	BibTeX
2000
Peter Deuflhard, Martin Weiser, Martin Seebass	A new nonlinear elliptic multilevel FEM in clinical cancer therapy planning	Comput. Vis. Sci., Vol.3, pp. 115-120, 2000	BibTeX
Johanna Gellermann, Peter Wust, Detlev Stalling, Martin Seebass, Johanna Nadobny, Rudolf Beck,

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