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Home  |  Members  |  Knötel, David

Knötel, David

Position: 
Guest
Room: 
4107
Division: 
Mathematics for Life and Materials Sciences
Department: 
Modeling and Simulation of Complex Processes
Visual and Data-centric Computing
Research group: 
Computational Anatomy and Physiology
Visual Data Analysis
Mail: 
knoetelzib.de
Phone: 
+49 30 84185 - 151
Fax: 
+49 30 84185 - 125
Personal website: 
Personal Homepage

Projects

Member

Image-based Bone Analysis
Segmentation and Quantitative Analysis of Cartilaginous Fish Skeletons
Comparative Zoology - Evolutionary Changes in Shape and Stratification of Crabs
Reconstruction of subcellular structures

Publications

2020 2019 2018 2017 2016 2015 2014

2020

Gerhard Scholtz, David Knötel, Daniel Baum D’Arcy W. Thompson’s Cartesian transformations: a critical evaluation Zoomorphology, Vol.139, pp. 293-308, 2020 BibTeX
DOI

2019

Daniel Baum, James C. Weaver, Igor Zlotnikov, David Knötel, Lara Tomholt, Mason N. Dean High-Throughput Segmentation of Tiled Biological Structures using Random-Walk Distance Transforms Integrative And Comparative Biology, 2019 (preprint available as ZIB-Report 19-33) PDF (ZIB-Report)
BibTeX
DOI

2018

David Knötel, Carola Becker, Gerhard Scholtz, Daniel Baum Global and Local Mesh Morphing for Complex Biological Objects from microCT Data Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), pp. 179-183, 2018 (preprint available as ZIB-Report 18-53) PDF (ZIB-Report)
BibTeX
DOI

2017

David Knötel, Ronald Seidel, Steffen Prohaska, Mason N. Dean, Daniel Baum Automated Segmentation of Complex Patterns in Biological Tissues: Lessons from Stingray Tessellated Cartilage PLOS ONE, 2017 (preprint available as ZIB-Report 17-62) PDF (ZIB-Report)
BibTeX
DOI
David Knötel, Ronald Seidel, Paul Zaslansky, Steffen Prohaska, Mason N. Dean, Daniel Baum Automated Segmentation of Complex Patterns in Biological Tissues: Lessons from Stingray Tessellated Cartilage (Supplementary Material) 2017 BibTeX
DOI
Ronald Seidel, Michael Blumer, Paul Zaslansky, David Knötel, Daniel R. Huber, James C. Weaver, Peter Fratzl, Sidney Omelon, Luca Bertinetti, Mason N. Dean Ultrastructural, material and crystallographic description of endophytic masses – a possible damage response in shark and ray tessellated calcified cartilage Journal of Structural Biology, 2017 BibTeX
DOI

2016

Mason N. Dean, R. Seidel, David Knötel, K. Lyons, Daniel Baum, James C. Weaver, Peter Fratzl To build a shark: 3D tiling laws of tessellated cartilage Abstract in Integrative and Comparative Biology; conference Society of Integrative and Comparative Biology annual meeting, January 3-7, 2016, Portland, USA, Vol.56 (suppl 1), 2016 BibTeX
David Knötel, Ronald Seidel, Ahmed Hosny, Paul Zaslansky, James C. Weaver, Daniel Baum, Mason N. Dean Understanding the Tiling Rules of the Tessellated Mineralized Endoskeleton of Sharks and Rays Poster, Euro Bio-inspired Materials 2016, Potsdam, Germany, February 22 - 25, 2016, 2016 BibTeX

2015

Rebecca M. Hoerth, Daniel Baum, David Knötel, Steffen Prohaska, Bettina M. Willie, Georg N. Duda, Hans-Christian Hege, Peter Fratzl, Wolfgang Wagermaier Registering 2D and 3D Imaging Data of Bone during Healing Connective Tissue Research, 56(2), pp. 133-143, 2015 (preprint available as ZIB-Report 15-01) PDF (ZIB-Report)
BibTeX
DOI
David Knötel, Ronald Seidel, James C. Weaver, Daniel Baum, Mason N. Dean Segmentation of the Tessellated Mineralized Endoskeleton of Sharks and Rays Poster, Tomography for Scientific Advancement symposium (ToScA), Manchester, UK, September 3 - 4, 2015, 2015 BibTeX

2014

Ronald Seidel, David Knötel, Daniel Baum, James C. Weaver, Mason N. Dean Material and structural characterization of mineralized elasmobranch cartilage – lessons in repeated tiling patterns in mechanically loaded 3D objects Poster, Tomography for Scientific Advancement symposium (ToScA), London, UK, September 1 - 3, 2014, 2014 BibTeX
David Knötel Segmentation of ray and shark tesserae Master's thesis, Freie Universität Berlin, Daniel Baum (Advisor), 2014 PDF
BibTeX
URN
  • Research
    • Solutions for Individualized Medicine
    • Molecular and Biological Processes
    • Materials and Optical Processes
    • Combinatorics and MINLP
    • MSO for Multiscale Systems
    • Robust Solutions under Uncertainty
    • Digital Humanities
    • Efficient Infrastructure and Logistics
    • Large-Scale Data Management, Curation & Analysis
    • Highly Parallel Computing
    • Scalable and Fault-Tolerant Algorithms
    • Publications
    • Books
    • Features
  • Institute
    • Research Campus MODAL
    • Intel IPCC Research Center
    • Joint Lab Optics
    • Oracle Center of Excellence
    • Organization
    • Organizational Chart
    • Committees and Regulations
    • Spin-Offs
    • Konrad Zuse
    • Hall of Fame
  • Research Services
    • NHR Center at ZIB
    • Supercomputing
    • Data Archive
    • KOBV
    • BRAIN
    • Software
    • Room Reservation
    • Library
  • Members
  • Training & Outreach
    • Graduate Students
    • Scholarships
    • Lectures
    • Trainee Openings
    • Schools
    • Press
    • Public Events
    • Guided Tours
    • Alumni
    • Topics for theses
  • Contact