Digital Neuroanatomy, Data Visualization, and Modelling
This project continues the research started in Virtual NeuroLab.
In this project we will establish a standardized pipeline for the creation of surface-based brain atlases from a population of individual brains. The pipeline roughly comprises the following steps: imaging, segmentation, surface reconstruction, and averaging. The emphasis is on methods for creation, management, and visualisation of brain atlases. The tools developed in recent years will be generalized and adapted in particular for hierarchical atlases. This will also include a concept for integration of functional data. The methods will be applied in close cooperation with the participating research groups.
Publications
2010
2009
2008
2007
2005
2010 |
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Anja Kuß, Maria Gensel, Björn Meyer, Vincent J. Dercksen, Steffen Prohaska | Effective Techniques to Visualize Filament-Surface Relationships | Comput. Graph. Forum, Vol.29, pp. 1003-1012, 2010 |
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Jürgen Rybak, Anja Kuß, Hans Lamecker, Stefan Zachow, Hans-Christian Hege, Matthias Lienhard, Jochen Singer, Kerstin Neubert, Randolf Menzel | The Digital Bee Brain: Integrating and Managing Neurons in a Common 3D Reference System | Front. Syst. Neurosci., 4(30), 2010 |
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2009 |
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Anja Kuß, Hans-Christian Hege | Knowledge Representation for Digital Atlases | Conference Abstracts: Workshop of the Working Group 'Ontologies in Biomedicine and the Life Science', 2009 |
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Jürgen Rybak, Anja Kuß, Wolfgang Holler, Robert Brandt, Hans-Christian Hege, Randolf Menzel | The HoneyBee Standard Brain (HSB) - a versatile atlas tool for integrating data and data exchange in the neuroscience community | BMC Neuroscience, Vol.10 (Suppl 1):P1, 2009 |
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Anja Kuß, Steffen Prohaska, Jürgen Rybak | Using Ontologies for the Visualization of Hierarchical Neuroanatomical Structures | Frontiers in Neuroinformatics. Conference Abstract: 2nd INCF Congress of Neuroinformatics, 2009 |
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Vincent J. Dercksen, Maria Gensel, Anja Kuß | Visual Accentuation of Spatial Relationships between Filamentous and Voluminous Surface Structures | Conference Abstract, Eurographics / IEEE Symposium on Visualization, 2009 |
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Maria Gensel | Visualisierungsmethoden zur Verdeutlichung der räumlichen Beziehungen zwischen linien- und flächenartigen Strukturen am Beispiel neurobiologischer Daten | Master's thesis, Freie Universität Berlin, Helmut Alt, Hans-Christian Hege (Advisors), 2009 |
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2008 |
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Matthias Lienhard | Aufbau und Analyse eines statistischen Formmodells des Gehirns der Honigbiene Apis Mellifera | Bachelor's thesis, Freie Universität Berlin, Fachbereich Informatik (R. Menzel) und ZIB (S. Zachow), Randolf Menzel, Jürgen Rybak, Hans Lamecker, Stefan Zachow (Advisors), 2008 |
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Jochen Singer | Entwicklung einer Anpassungsstrategie zur Autosegmentierung des Gehirns der Honigbiene Apis mellifera mittels eines statistischen Formmodells | Bachelor's thesis, Freie Universität Berlin, Fachbereich Informatik (R. Menzel) und ZIB (S. Zachow), Randolf Menzel, Jürgen Rybak, Hans Lamecker, Stefan Zachow (Advisors), 2008 |
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Heiko Seim, Dagmar Kainmüller, Anja Kuss, Hans Lamecker, Stefan Zachow, Randolf Menzel, Juergen Rybak | Model-based autosegmentation of the central brain of the honeybee, Apis mellifera, using active statistical shape models | Proc. 1st INCF Congress of Neuroinformatics: Databasing and Modeling the Brain, 2008 |
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Anja Kuß, Steffen Prohaska, Björn Meyer, Jürgen Rybak, Hans-Christian Hege | Ontology-Based Visualization of Hierarchical Neuroanatomical Structures | Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine VCBM 2008, pp. 177-184, 2008 |
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2007 |
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Anja Kuß, Hans-Christian Hege, Sabine Krofczik, Jana Börner | Pipeline for the creation of surface-based averaged brain atlases | Proceedings of WSCG 2007 - the 15-th International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision, pp. 17-24, Vol.15, 2007 |
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2005 |
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Robert Brandt, Torsten Rohlfing, Jürgen Rybak, Sabine Krofczik, Alexander Maye, Malte Westerhoff, Hans-Christian Hege, Randolf Menzel | A three-dimensional average-shape atlas of the honeybee brain and its applications | Journal of Comparative Neurology, Vol.492(1), pp. 1-19, 2005 |
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