2020
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Nada Cvetkovic, Tim Conrad, Han Cheng Lie |
A convergent discretisation method for transition path theory for diffusion processes
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Multiscale Modeling & Simulation, 2020 (accepted) |
BibTeX
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Huy Le Duc, Tim Conrad |
A light-weight and highly flexible software system for analyzing large bio-medical datasets
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Future Generation Computer Systems, 2020 (under review) |
BibTeX
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Sahar Iravani, Tim Conrad |
An Interpretable Deep Learning Approach for Biomarker Detection in LC-MS Proteomics Data
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Bioinformatics, 2020 (under review) |
BibTeX
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Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Estacio, Christian Doenitz, Heiko Ramm |
Automated Virtual Reconstruction of Large Skull Defects using Statistical Shape Models and Generative Adversarial Networks
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Towards the Automatization of Cranial Implant Design in Cranioplasty, Vol.12439, 2020 (accepted for publication) |
BibTeX
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Carmen Juds, Johannes Schmidt, Michael Weller, Thorid Lange, Tim Conrad, Hans Boerner |
Combining Phage Display and Next-generation Sequencing for Materials Sciences: A Case Study on Probing Polypropylene Surfaces
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Journal of the American Chemical Society, 2020 |
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DOI
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Mona Rams, Tim Conrad |
Dictionary Learning for transcriptomics data reveals type-specific gene modules in a multi-class setting
|
it - Information Technology, 62(3-4), 2020 |
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DOI
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Kateryna Melnyk, Grègoire Montavon, Stefan Klus, Tim Conrad |
Graph Kernel Koopman Embedding for Human Microbiome Analysis
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Applied Network Science, 2020 |
BibTeX
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Sourav Ray, Vikram Sunkara, Christof Schütte, Marcus Weber |
How to calculate pH-dependent binding rates for receptor-ligand systems based on thermodynamic simulations with different binding motifs
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Molecular Simulation, 2020 |
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DOI
URN
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Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara |
On the sufficient condition for solving the gap-filling problem using deep convolutional neural networks
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IEEE, 2020 (under review) |
BibTeX
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E. G. Tuncay, Tim Conrad, R. C. Erdur |
Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: PERSONA
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IEEE Transactions on Computational Biology and Bioinformatics, 2020 (under review) |
BibTeX
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Hanna Wulkow, Tim Conrad, Natasa Djurdjevac Conrad, Sebastian A. Müller, Kai Nagel, Christof Schütte |
Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts
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PLOS One, 2020 (under review) |
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DOI
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Mona Rams, Tim Conrad |
Sparse dictionary learning allows model-free pseudotime estimation of transcriptomics data
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Bioinformatics, 2020 (under review) |
BibTeX
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K. Weimann, Tim Conrad |
Transfer Learning for ECG Classification
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Scientific Reports, 2020 (under review) |
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Anjany Sekuboyina, Amirhossein Bayat, Malek E. Husseini, Maximilian Löffler, Hongwei Li, Giles Tetteh, Jan Kukačka, Christian Payer, Darko Štern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Qingyue Wei, Kevin Brown, Matthias Wolf, Alexandre Kirszenberg, Élodie Puybareau, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke |
VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images
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Elsevier, 2020 (under review) |
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2019
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Alexander Tack, Stefan Zachow |
Accurate Automated Volumetry of Cartilage of the Knee using Convolutional Neural Networks: Data from the Osteoarthritis Initiative
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IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 40-43, 2019 (preprint available as ) |
BibTeX
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Pooja Gupta, Sarah Peter, Markus Jung, Astrid Lewin, Georg Hemmrich-Stanisak, Andre Franke, Max von Kleist, Christof Schütte, Ralf Einspanier, Soroush Sharbati, Jennifer zur Bruegge |
Analysis of long non-coding RNA and mRNA expression in bovine macrophages brings up novel 2 aspects of Mycobacterium avium subspecies paratuberculosis infections
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Scientific Reports in Nature, Vol.9, 2019 |
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DOI
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Maren Alchikh, Tim Conrad, Xiaolin Ma, Eeva K. Broberg, P. Penttinen, J. Reiche, Barbara Biere, B. Schweiger, Barbara Rath, Christian Hoppe |
Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care
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Clinical Microbiology and Infection, 25(3), pp. 380.e9-380.e16, 2019 |
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Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow |
Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative
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Medical Image Analysis, 52(2), pp. 109-118, 2019 (preprint available as ZIB-Report 19-06) |
PDF (ZIB-Report)
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DOI
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Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow |
Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative (Supplementary Material)
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Medical Image Analysis, 52(2), pp. 109-118, 2019 (OAI-ZIB dataset) |
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DOI
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Sahar Iravani, Tim Conrad |
Deep Learning for Proteomics Data for Feature Selection and Classification
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Lecture Notes in Computer Science, A. Holzinger, P. Kieseberg, A. Tjoa, E. Weippl (Eds.), Vol.11713, Machine Learning and Knowledge extraction, 2019 |
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DOI
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Thomas Hildebrandt, Jan Joris Bruening, Hans Lamecker, Stefan Zachow, Werner Heppt, Nora Schmidt, Leonid Goubergrits |
Digital Analysis of Nasal Airflow Facilitating Decision Support in Rhinosurgery
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Facial Plastic Surgery, 35(1), pp. 1-8, 2019 |
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DOI
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Tobias Haase, Vikram Sunkara, Benjamin Kohl, Carola Meier, Patricia Bußmann, Jessica Becker, Michal Jagielski, Max von Kleist, Wolfgang Ertel |
Discerning the spatio-temporal disease patterns of surgically induced OA mouse models
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PLOS One, 14(4), 2019 |
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DOI
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Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad |
EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma
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PLOS ONE, 14(1), 2019 |
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DOI
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Wei Zhang
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Ergodic SDEs on submanifolds and related numerical sampling schemes
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ESAIM: Mathematical Modelling and Numerical Analysis, 2019 |
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arXiv
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Steffen Oeltze-Jaffra, Monique Meuschke, Mathias Neugebauer, Sylvia Saalfeld, Kai Lawonn, Gabor Janiga, Hans-Christian Hege, Stefan Zachow, Bernhard Preim |
Generation and Visual Exploration of Medical Flow Data: Survey, Research Trends, and Future Challenges
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Computer Graphics Forum, 38(1), pp. 87-125, 2019 |
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DOI
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Carsten Hartmann, Christof Schütte, Wei Zhang |
Jarzynski's equality, fluctuation theorems, and variance reduction: Mathematical analysis and numerical algorithms
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Journal of Statistical Physics, 175(6), pp. 1214-1261, 2019 |
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arXiv
DOI
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Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte |
Learning chemical reaction networks from trajectory data
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SIAM Journal on Applied Dynamical Systems (SIADS), 18(4), pp. 2000-2046, 2019 |
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arXiv
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Patrick Gelß, Stefan Klus, Jens Eisert, Christof Schütte |
Multidimensional Approximation of Nonlinear Dynamical Systems
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Journal of Computational and Nonlinear Dynamics, 14(6), 2019 |
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DOI
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Tony Lelièvre, Wei Zhang |
Pathwise estimates for effective dynamics: the case of nonlinear vectorial reaction coordinates
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Multiscale Modeling and Simulation, pp. 1019-1051, 2019 |
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arXiv
DOI
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Felix Ambellan, Hans Lamecker, Christoph von Tycowicz, Stefan Zachow |
Statistical Shape Models - Understanding and Mastering Variation in Anatomy
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Biomedical Visualisation, Paul M. Rea (Ed.), Springer Nature Switzerland AG, 1, pp. 67-84, 2019, ISBN: 978-3-030-19384-3, ISBN: 978-3-030-19385-0 (preprint available as ZIB-Report 19-13) |
PDF (ZIB-Report)
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DOI
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Thomas Hildebrandt, Jan Joris Bruening, Nora Laura Schmidt, Hans Lamecker, Werner Heppt, Stefan Zachow, Leonid Goubergrits |
The Healthy Nasal Cavity - Characteristics of Morphology and Related Airflow Based on a Statistical Shape Model Viewed from a Surgeon’s Perspective
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Facial Plastic Surgery, 35(1), pp. 9-13, 2019 |
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DOI
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2018
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Péter Koltai, Christof Schütte |
A multiscale perturbation expansion approach for Markov state modeling of non-stationary molecular dynamics
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SIAM J. Multiscale Model. Simul., 16(4), pp. 1455-1485, 2018 (accepted for publication on 2018-08-15, preprint available as ) |
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DOI
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Christoph von Tycowicz, Felix Ambellan, Anirban Mukhopadhyay, Stefan Zachow |
An Efficient Riemannian Statistical Shape Model using Differential Coordinates
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Medical Image Analysis, 43(1), pp. 1-9, 2018 (preprint available as ) |
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DOI
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Maren Alchikh, Tim Conrad, Christian Hoppe, Xiaolin Ma, Eeva K. Broberg, P. Penttinen, J. Reiche, Barbara Biere, B. Schweiger, Barbara Rath |
Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care. Clinical Microbiology and Infection
|
Clinical Microbiology and Infection, pp. 1-1, 2018 (accepted for publication) |
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DOI
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F. Kork, C. Spies, Tim Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, Felix Balzer |
Associations of postoperative mortality with the time of day, week and year
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Anaesthesia, 2018 (accepted for publication) |
BibTeX
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Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow |
Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative
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Medical Imaging with Deep Learning, 2018 |
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Xiaolin Ma, Tim Conrad, Maren Alchikh, J. Reiche, B. Schweiger, Barbara Rath |
Can we distinguish respiratory viral infections based on clinical features? A prospective pediatric cohort compared to systematic literature review
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Medical Virology, 28(5), pp. 1-12, 2018 (accepted for publication) |
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DOI
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Mohsen Akbari Shandiz, Paul Boulos, Stefan Sævarsson, Heiko Ramm, Chun Kit Fu, Stephen Miller, Stefan Zachow, Carolyn Anglin |
Changes in Knee Shape and Geometry Resulting from Total Knee Arthroplasty
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Journal of Engineering in Medicine, 232(1), pp. 67-79, 2018 |
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DOI
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Patrick Obermeier, A. Heim, Barbara Biere, E. Hage, Maren Alchikh, Tim Conrad, B. Schweiger, Barbara Rath |
Clinical characteristics and disease severity associated with adenovirus infections in infants and children - discovery of a novel adenovirus, HAdV-D80
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Clinical Infectious Diseases, 2018 (under review) |
BibTeX
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Stefan Klus, Feliks Nüske, Peter Koltai, Hao Wu, Ioannis Kevrekidis, Christof Schütte, Frank Noé |
Data-driven model reduction and transfer operator approximation
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Journal of Nonlinear Science, 28(3), pp. 985-1010, 2018 |
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DOI
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Forough Marzban, Tim Conrad, Pouria Marban, Sahar Sodoudi |
Estimation of the Near-Surface Air Temperature during the Day and Nighttime from MODIS in Berlin, Germany
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International Journal of Advanced Remote Sensing and GIS, 7(1), pp. 2478-2517, 2018 |
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DOI
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Alexander Tack, Anirban Mukhopadhyay, Stefan Zachow |
Knee Menisci Segmentation using Convolutional Neural Networks: Data from the Osteoarthritis Initiative
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Osteoarthritis and Cartilage, 26(5), pp. 680-688, 2018 (preprint available as ) |
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DOI
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Manuel Dibak, Mauricio J. del Razo, David De Sancho, Christof Schütte, Frank Noé |
MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations
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Journal of Chemical Physics, 148(214107), 2018 |
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Peter Koltai, Hao Wu, Frank Noé, Christof Schütte |
Optimal data-driven estimation of generalized Markov state models for non-equilibrium dynamics
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Computation, 6(1), 2018 |
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DOI
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Victor Mireles, Tim Conrad |
Reusable building blocks in biological systems
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Journal of the Royal Society Interface, 15(149), pp. 1-10, 2018 (accepted for publication) |
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DOI
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G. Hettich, R. A. Schierjott, C. Schilling, A. Maas, Heiko Ramm, Matthias Bindernagel, Hans Lamecker, T. M. Grupp |
Validation of a Statistical Shape Model for Acetabular Bone Defect Analysis
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ISTA 2018 London Abstract Book, 2018 (accepted for publication) |
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2017
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Manish Sahu, Anirban Mukhopadhyay, Angelika Szengel, Stefan Zachow |
Addressing multi-label imbalance problem of Surgical Tool Detection using CNN
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International Journal of Computer Assisted Radiology and Surgery, 12(6), pp. 1013-1020, 2017 |
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DOI
|
Fahrnaz Jayrannejad, Tim Conrad |
Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining
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Springer Lecture Notes in Artificial Intelligence, p. studi, 2017 (accepted for publication) |
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L. Seeber, Tim Conrad, Christian Hoppe, Patrick Obermeier, X. Chen, K. Karsch, S. Muehlhans, F. Tief, Sindy Boettcher, S. Diedrich, B. Schweiger, Barbara Rath |
Educating parents about the vaccination status of their children: A user-centered mobile application
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Preventive Medicine Reports, Vol.5, pp. 241-250, 2017 (accepted for publication) |
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DOI
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Shao Borong, Carlo Cannistraci, Tim Conrad |
Epithelial Mesenchymal Transition Network-based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data
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Genomics and Computational Biology, 3(3), pp. 1-13, 2017 (accepted for publication) |
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DOI
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Stefanie Winkelmann, Christof Schütte |
Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems
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The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ) |
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DOI
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Pooja Gupta, Annika Gramatke, Ralf Einspanier, Christof Schütte, Max von Kleist, Jutta Sharbati |
In silico cytotoxicity assessment on cultured rat intestinal cells deduced from cellular impedance measurements
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Toxicology in Vitro, Vol.41, pp. 179-188, 2017 (preprint available as ZIB-Report 17-08) |
PDF (ZIB-Report)
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Barbara Rath, Tim Conrad, Puja Myles, Maren Alchikh, Xiaolin Ma, Christian Hoppe, Franziska Tief, Xi Chen, Patrick Obermeier, Bron Kisler, Brunhilde Schweiger |
Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials
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Expert Review of Anti-infective Therapy, 15(6), pp. 545-568, 2017 |
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DOI
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Manuel Dibak, Mauricio J. del Razo, David de Sancho, Christof Schütte, Frank Noé |
MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations
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Journal of Chemical Physics, 2017 (accepted for publication) |
BibTeX
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Andreas Benn, Christian Hiepen, Marc Osterland, Christof Schütte, An Zwijsen, Petra Knaus |
Role of bone morphogenetic proteins in sprouting angiogenesis: differential BMP receptor-dependent signaling pathways balance stalk vs. tip cell competence
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FASEB Journal, 31(11), pp. 4720-4733, 2017 |
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DOI
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Florian Bernard, Luis Salamanca, Johan Thunberg, Alexander Tack, Dennis Jentsch, Hans Lamecker, Stefan Zachow, Frank Hertel, Jorge Goncalves, Peter Gemmar |
Shape-aware Surface Reconstruction from Sparse 3D Point-Clouds
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Medical Image Analysis, Vol.38, pp. 77-89, 2017 |
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DOI
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Rudolf Huttary, Leonid Goubergrits, Christof Schütte, Stefan Bernhard |
Simulation, Identification and Statistical Variation in Cardiovascular Analysis (SISCA) - a Software Framework for Multi-compartment Lumped Modeling
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Computers in Biology and Medicine, Vol.87, pp. 104-123, 2017 |
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Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Benedikt Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte |
Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data
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BMC Bioinfomatics, 18(160), 2017 |
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DOI
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Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Jan Vybiral, Gitta Kutyniok, Christof Schütte |
Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data
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BMC Bioinformatics, 18(160), pp. 1-20, 2017 |
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DOI
|
Max von Kleist, Christof Schütte, Wei Zhang |
Statistical analysis of the first passage path ensemble of jump processes
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Journal of Statistical Physics, 2017 (accepted for publication on 2017-12-22) |
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David Wilson, Carolyn Anglin, Felix Ambellan, Carl Martin Grewe, Alexander Tack, Hans Lamecker, Michael Dunbar, Stefan Zachow |
Validation of three-dimensional models of the distal femur created from surgical navigation point cloud data for intraoperative and postoperative analysis of total knee arthroplasty
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International Journal of Computer Assisted Radiology and Surgery, 12(12), pp. 2097-2105, 2017 |
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2016
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Tim Conrad, Xintian You |
Acfs: accurate circRNA identification and quantification from NGS data
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Nature Scientific Reports, Vol.6, 2016 |
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DOI
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F. Tief, Christian Hoppe, L. Seeber, Patrick Obermeier, X. Chen, K. Karsch, S. Muehlhans, E. Adamou, Tim Conrad, B. Schweiger, T. Adam, Barbara Rath |
An inception cohort study assessing the role of bacterial co-infections in children with influenza and ILI and a clinical decision model for stringent antibiotic use
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Antiviral Therapy, Vol.21, pp. 413-424, 2016 |
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Patrick Obermeier, S. Muehlhans, Christian Hoppe, K. Karsch, F. Tief, L. Seeber, X. Chen, Tim Conrad, Sindy Boettcher, S. Diedrich, Barbara Rath |
Enabling Precision Medicine With Digital Case Classification at the Point-of-Care
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EBioMedicine, Vol.4, pp. 191-196, 2016 |
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DOI
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Borong Shao, Tim Conrad |
Epithelial Mesenchymal Transition Regulatory Network-based Feature Selection in Lung Cancer Prognosis Prediction
|
Lecture Notes in Computer Science (LNCS), pp. 1235-146, Vol.9656, 2016 |
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DOI
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Natasa Djurdjevac Conrad, Marcus Weber, Christof Schütte |
Finding dominant structures of nonreversible Markov processes
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Multiscale Modeling and Simulation, 14(4), pp. 1319-1340, 2016 (preprint available as ) |
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DOI
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Iliusi Vega, Christof Schütte, Tim Conrad |
Finding metastable states in real-world time series with recurrence networks
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Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016 |
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DOI
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Christian Hoppe, Patrick Obermeier, S. Mehlhans, Maren Alchikh, L. Seeber, F. Tief, K. Karsch, X. Chen, Sindy Boettcher, S. Diedrich, Tim Conrad |
Innovative Digital Tools and Surveillance Systems for the Timely Detection of Adverse Events at the Point of Care: A Proof-of-Concept Study
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Drug Safety, 39(10), pp. 977-988, 2016 |
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DOI
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Anirban Mukhopadhyay, Arun Kumar, Suchendra Bhandarkar |
Joint Geometric Graph Embedding for Partial Shape Matching in Images
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IEEE Winter Conference on Applications of Computer Vision, pp. 1-9, IEEE, IEEE Winter Conference on Applications of Computer Vision (WACV), 2016 |
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Peter Koltai, Giovanni Ciccotti, Christof Schütte |
On Markov state models for non-equilibrium molecular dynamics
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The Journal of Chemical Physics, 145(174103), 2016 (preprint available as ZIB-Report 16-11) |
PDF (ZIB-Report)
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DOI
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Stefan Klus, Peter Koltai, Christof Schütte |
On the numerical approximation of the Perron-Frobenius and Koopman operator
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Journal of Computational Dynamics, 3(1), pp. 51-77, 2016 |
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DOI
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Anirban Mukhopadhyay, Oscar Morillo, Stefan Zachow, Hans Lamecker |
Robust and Accurate Appearance Models Based on Joint Dictionary Learning Data from the Osteoarthritis Initiative
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Lecture Notes in Computer Science, Patch-Based Techniques in Medical Imaging. Patch-MI 2016, pp. 25-33, Vol.9993, 2016 |
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DOI
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Patrick Gelß, Sebastian Matera, Christof Schütte |
Solving the master equation without kinetic Monte Carlo: Tensor train approximations for a CO oxidation model
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Journal of Computational Physics, Vol.314, pp. 489-502, 2016 |
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DOI
|
Hans Lamecker, Stefan Zachow |
Statistical Shape Modeling of Musculoskeletal Structures and Its Applications
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Computational Radiology for Orthopaedic Interventions, Springer, pp. 1-23, 2016, ISBN: 978-3-319-23481-6 |
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DOI
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Stefanie Winkelmann, Christof Schütte |
The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling
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Journal of Chemical Physics, 145(21), 2016 (preprint available as ) |
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DOI
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Anirban Mukhopadhyay
|
Total Variation Random Forest: Fully automatic MRI segmentation in congenital heart disease
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RAMBO 2016, HVSMR 2016: Reconstruction, Segmentation, and Analysis of Medical Images, pp. 165-171, Vol.LNCS 10129, 2016 |
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DOI
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Stefan Klus, Christof Schütte |
Towards tensor-based methods for the numerical approximation of the Perron-Frobenius and Koopman operator
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Journal of Computational Dynamics, 3(2), pp. 139-161, 2016 |
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DOI
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2015
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Tim Conrad, Borong Shao |
Are NoSQL data stores useful for bioinformatics researchers?
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International Journal on Recent and Innovation Trends in Computing and Communication (IJRITCC), 3(3), pp. 1704-1708, 2015 |
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DOI
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Anirban Mukhopadhyay, Ilkay Oksuz, Marco Bevilacqua, Rohan Dharmakumar, Sotirios Tsaftaris |
Data-Driven Feature Learning for Myocardial Segmentation of CP-BOLD MRI
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Functional Imaging and Modeling of the Heart, pp. 189-197, Vol.9126, Lecture Notes in Computer Science, 2015 |
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DOI
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Ilkay Oksuz, Anirban Mukhopadhyay, Marco Bevilacqua, Rohan Dharmakumar, Sotirios Tsaftaris |
Dictionary Learning Based Image Descriptor for Myocardial Registration of CP-BOLD MR
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Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015, pp. 205-213, Vol.9350, Lecture Notes in Computer Science, 2015 |
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DOI
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Tim Conrad, K. Karsch, Patrick Obermeier, L. Seeber, X. Chen, F. Tief, S. Muehlhans, Christian Hoppe, Sindy Boettcher, S. Diedrich, Barbara Rath |
Human Parechovirus Infections Associated with Seizures and Rash: A Syndromic Surveillance Study in Children
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The Pediatric Infectious Disease Journal, 34(10), 2015 |
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Raheem Gul, Christof Schütte, Stefan Bernhard |
Mathematical modeling and sensitivity analysis of arterial anastomosis in arm arteries
|
ZIB-Report 15-22 |
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URN
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Tim Conrad, Victor Mireles |
Minimum-overlap clusterings and the sparsity of overcomplete decompositions of binary matrics
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Procedia Computer Science, Vol.51, pp. 2967-2971, 2015 |
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DOI
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Natasa Djurdjevac Conrad, Ralf Banisch, Christof Schütte |
Modularity of Directed Networks: Cycle Decomposition Approach
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Journal of Computational Dynamics 2 (2015) pp. 1-24, 2015 (preprint available as ) |
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DOI
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Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist |
Optimal Treatment Strategies in the Context of 'Treatment for Prevention' against HIV/1 in Resource-Poor Settings
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PloS Computational Biology, 11(4), 2015 |
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DOI
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Ralf Banisch, Natasa Djurdjevac Conrad, Christof Schütte |
Reactive flows and unproductive cycles for random walks on complex networks
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The European Physical Journal Special Topics, vol. 224, iss. 12 (2015) pp. 2369-2387, 2015 (preprint available as ZIB-Report 15-19) |
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DOI
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Marc Osterland, Andreas Benn, Steffen Prohaska, Christof Schütte |
Single Cell Tracking in Phase-Contrast Microscopy
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EMBL Symposium 2015 - Seeing is Believing - Imaging the Processes of Life, 2015 |
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Ivan Kryven, Susanna Röblitz, Christof Schütte |
Solution of the chemical master equation by radial basis functions approximation with interface tracking
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BMC Systems Biology, 9(67), pp. 1-12, 2015 |
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DOI
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Anirban Mukhopadhyay, Ilkay Oksuz, Marco Bevilacqua, Rohan Dharmakumar, Sotirios Tsaftaris |
Unsupervised myocardial segmentation for cardiac MRI
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Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015, pp. 12-20, Vol.LNCS 9351, 2015 |
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DOI
|
2014
|
Han Wang, Christof Schütte |
Building Markov State Models for Periodically Driven Non-Equilibrium Systems
|
ZIB-Report 14-46 |
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URN
|
Stefanie Winkelmann, Christof Schütte, Max von Kleist |
Markov Control Processes with Rare State Observation: Theory and Application to Treatment Scheduling in HIV-1
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Communications in Mathematical Sciences, 12(5), pp. 859-877, 2014 (preprint available as ) |
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DOI
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Pooja Gupta, Carola Krause, Paul Rikeit, Susanna Röblitz, Petra Knaus, Christof Schütte |
Modeling of the BMP mediated co-regulation of the Smad and Non-Smad pathways in the context of cell density
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10th International BMP conference, 2014, Berlin, Germany, 2014 |
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Marco Sarich, Natasa Djurdjevac Conrad, Sharon Bruckner, Tim Conrad, Christof Schütte |
Modularity revisited: A novel dynamics-based concept for decomposing complex networks
|
Journal of Computational Dynamics, 1(1), pp. 191-212, 2014 |
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DOI
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Christof Schütte, Tim Conrad |
Showcase 3: Information-based medicine
|
MATHEON-Mathematics for Key Technologies, Vol.1, pp. 66-67, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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2013
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Pooja Gupta, Norbert Reinsch, Andreas Spötter, Tim Conrad, Kaspar Bienefeld |
Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera)
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BMC Genetics, 14(36), 2013 |
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Tim Conrad, Sharon Bruckner, Bastian Kayser |
Finding Modules in Networks with Non-modular Regions
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Lecture Notes in Computer Science (Proceedings of SEA 2013), Vol.7933, pp. 188-199, 2013 |
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Tim Conrad, Alexander Benedikt Leichtle, Uta Ceglarek, P. Weinert, C.T. Nakas, Jean-Marc Nuoffer, Julia Kase, H. Witzigmann, J. Thiery, Georg Martin Fiedler |
Pancreatic carcinoma, pancreatitis, and healthy controls - metabolite models in a three-class diagnostic dilemma
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Metabolomics, 9(3), pp. 677-687, 2013 |
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Tim Conrad, Barbara Rath, F. Tief, K. Karsch, S. Muehlhans, Patrick Obermeier, E. Adamou, X. Chen, L. Seeber, Ch. Peiser, Christian Hoppe, M. von Kleist, B. Schweiger |
Towards a personalized approach to managing of influenza infections in infants and children - food for thought and a note on oseltamivir
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Infectious Disorders - Drug Targets, 13(1), pp. 25-33, 2013 |
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2012
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Tim Conrad, Christof Schütte, Stephan Aiche, Knut Reinert, Diana Hildebrand, Hartmunt Schlüter |
Inferring Proteolytic Processes from Mass Spectrometry Time Series Data Using Degradation Graphs
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PLoS ONE, 7(7), 2012 |
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Tim Conrad, Alexander Benedikt Leichtle, Jean-Marc Nuoffer, Uta Ceglarek, Julia Kase, Helmut Witzigmann, Joachim Thiery, Georg Martin Fiedler |
Serum amino acid profiles and their alterations in colorectal cancer
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Metabolomics, 2012 |
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Pooja Gupta, Tim Conrad, Andreas Spötter, Norbert Reinsch, Kaspar Bienefeld |
Simulating a base population in honey bee for molecular genetic studies
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Genetics Selection Evolution, 2012 |
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2004
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Tim Conrad
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New Appraches for Visualizing and Analyzing Metabolic Pathways
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Proceedings of the Second Australian Undergraduate Students? Computing Conference, 2004 |
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