2023
|
Alberto Montefusco, Christof Schütte, Stefanie Winkelmann |
A route to the hydrodynamic limit of a reaction-diffusion master equation using gradient structures
|
SIAM Journal on Applied Mathematics, 83(2), pp. 837-861, 2023 |
BibTeX
arXiv
DOI
|
Arthur Straube, Stefanie Winkelmann, Felix Höfling |
Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles
|
The Journal of Physical Chemistry B, 127(13), pp. 2955-2967, 2023 (preprint available as ZIB-Report 22-21) |
PDF (ZIB-Report)
BibTeX
arXiv
DOI
|
Mauricio del Razo, Stefanie Winkelmann, Rupert Klein, Felix Höfling |
Chemical diffusion master equation: formulations of reaction-diffusion processes on the molecular level
|
Journal of Mathematical Physics, 64(1), 2023 |
BibTeX
DOI
arXiv
|
Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann |
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
|
Scientific Reports, 13(607), 2023 |
BibTeX
DOI
|
Christopher Secker, Konstantin Fackeldey, Marcus Weber, Sourav Ray, Christoph Gorgulla, Christof Schütte |
Novel multi-objective affinity approach allows to identify pH-specific μ-opioid receptor agonists
|
2023 (under review) |
BibTeX
|
2022
|
Mauricio del Razo, Daniela Frömberg, Arthur Straube, Christof Schütte, Felix Höfling, Stefanie Winkelmann |
A probabilistic framework for particle-based reaction–diffusion dynamics using classical Fock space representations
|
Letters in Mathematical Physics, 112(49), 2022 |
BibTeX
arXiv
DOI
|
Alberto Montefusco, Upanshu Sharma, Oliver Tse |
Fourier-Cattaneo equation: stochastic origin, variational formulation, and asymptotic limits
|
2022 (under review) |
BibTeX
|
Maximilian Engel, Guillermo Olicón-Méndez, Nathalie Unger, Stefanie Winkelmann |
Synchronization and random attractors for reaction jump processes
|
2022 (under review) |
BibTeX
arXiv
DOI
|
Horst-Holger Boltz, Alexei Sirbu, Nina Stelzer, Primal de Lanerolle, Stefanie Winkelmann, Paolo Annibale |
The Impact of Membrane Protein Diffusion on GPCR Signaling
|
Cells, 11(10), p. 1660, 2022 |
BibTeX
DOI
|
2021
|
Hans Christian Öttinger, Alberto Montefusco, Mark A. Peletier |
A Framework of Nonequilibrium Statistical Mechanics. I. Role and Types of Fluctuations
|
Journal of Non-Equilibrium Thermodynamics, 46(1), pp. 1-13, 2021 |
BibTeX
DOI
|
Alberto Montefusco, Mark A. Peletier, Hans Christian Öttinger |
A Framework of Nonequilibrium Statistical Mechanics. II. Coarse-Graining
|
Journal of Non-Equilibrium Thermodynamics, 46(1), pp. 15-33, 2021 |
BibTeX
DOI
|
Jan-Hendrik Niemann, Stefanie Winkelmann, Sarah Wolf, Christof Schütte |
Agent-based modeling: Population limits and large timescales
|
Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021 |
PDF
BibTeX
URN
DOI
|
Alexander Mielke, Alberto Montefusco, Mark A. Peletier |
Exploring families of energy-dissipation landscapes via tilting: three types of EDP convergence
|
Continuum Mechanics and Thermodynamics, Vol.33, pp. 611-637, 2021 |
BibTeX
DOI
|
Amal Alphonse, Diogo Caetano, Ana Djurdjevac, Charles M. Elliott |
Function spaces, time derivatives and compactness for evolving families of Banach spaces with applications to PDEs
|
arXiv, 2021 (under review) |
BibTeX
arXiv
|
Daniela Frömberg, Felix Höfling |
Generalized master equation for first-passage problems in partitioned spaces
|
Journal of Physics A: Mathematical and Theoretical, Vol.54, p. 215601, 2021 |
BibTeX
DOI
|
Ana Djurdjevac
|
Linear Parabolic Problems in Random Moving Domains
|
9(2), pp. 848-879, 2021 |
BibTeX
DOI
|
Stefanie Winkelmann, Johannes Zonker, Christof Schütte, Natasa Djurdjevac Conrad |
Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading
|
Mathematical Biosciences, Vol.336, 2021 |
BibTeX
DOI
arXiv
|
Ana Djurdjevac, Carsten Gräser, Philip J. Herbert |
Non-stationary incompressible linear fluid equations in a moving domain
|
arXiv, 2021 |
BibTeX
arXiv
|
Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling |
Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles
|
J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021 |
BibTeX
DOI
|
Pietro Tierno, Tom H. Johansen, Arthur Straube |
Thermally active nanoparticle clusters enslaved by engineered domain wall traps
|
Nature Commun., Vol.12, p. 5813, 2021 |
BibTeX
DOI
|
2020
|
Stefanie Winkelmann,
Christof Schütte
|
Stochastic Dynamics in Computational Biology
|
Springer International Publishing, 2020, ISBN: 978-3-030-62386-9 |
BibTeX
DOI
|
2019
|
Margarita Kostré
|
Hybrid Models and Simulations of Reaction-Diffusion Processes
|
Master's thesis, Freie Universität Berlin, Frank Noe (Advisor), 2019 |
BibTeX
|
2018
|
Manuel Dibak, Mauricio J. del Razo, David de Sancho, Christof Schütte, Frank Noé |
MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations
|
Journal of Chemical Physics, 148(21), 2018 |
BibTeX
DOI
|
2017
|
Stefanie Winkelmann, Christof Schütte |
Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems
|
The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ZIB-Report 17-29) |
PDF
PDF (ZIB-Report)
BibTeX
DOI
|
Stefanie Winkelmann
|
Markov Control with Rare State Observation: Average Optimality
|
Markov Processes and Related Fields, Vol.23, pp. 1-34, 2017 (preprint available as ZIB-Report 16-59) |
PDF (ZIB-Report)
BibTeX
|
Andreas Bittracher, Péter Koltai, Stefan Klus, Ralf Banisch, Michael Dellnitz, Christof Schütte |
Transition manifolds of complex metastable systems: Theory and data-driven computation of effective dynamics
|
ZIB-Report 17-22 (accepted for publication on 2017-09-23) |
PDF
BibTeX
URN
|
S. Rüdrich, Marco Sarich, Christof Schütte |
Utilizing hitting times for finding metastable sets in non-reversible Markov chains
|
Journal of Comp. Dynamics, 2017 (under review, preprint available as ) |
BibTeX
|
2016
|
Stefanie Winkelmann, Christof Schütte |
The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling
|
Journal of Chemical Physics, 145(21), 2016 (preprint available as ZIB-Report 16-60) |
PDF
PDF (ZIB-Report)
BibTeX
DOI
|
Stefan Klus, Christof Schütte |
Towards tensor-based methods for the numerical approximation of the Perron-Frobenius and Koopman operator
|
Journal of Computational Dynamics, 3(2), pp. 139-161, 2016 |
BibTeX
DOI
|
2015
|
Ivan Kryven, Susanna Röblitz, Christof Schütte |
Solution of the chemical master equation by radial basis functions approximation with interface tracking
|
BMC Systems Biology, 9(67), pp. 1-12, 2015 |
PDF
BibTeX
DOI
|
Patrick Gelß, Sebastian Matera, Christof Schütte |
Solving the master equation without kinetic Monte Carlo: tensor train approximations for a CO oxidation model
|
ZIB-Report 15-41 |
PDF
BibTeX
URN
|
2014
|
Alexander Bockmayr, Heike Siebert, Susanna Röblitz, Christof Schütte, Peter Deuflhard |
Advanced mathematical modeling in systems biology
|
MATHEON-Mathematics for Key Technologies, Vol.1, pp. 29-44, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutela, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
BibTeX
|