2022:
- M. Weber, K. Fackeldey: The Mathematics of Comparing Objects, arXiv:2201.07032 [cs.AI], 2022.
2021:
- K. Fackeldey, C. Gorgulla, M. Weber: Neue Medikamente dank Supercomputern, Spektrum der Wissenschaft, 2021.
2020:
- M. Weber, K. Fackeldey: The Complexity of Comparative Text Analysis - "The Gardener is always the Murderer" says the Fourth Machine, arXiv:2012.07637 [cs.CL], 2020.
- M. Weber: A novel *R-based perspective on solving ordinary differential equations, arXiv:2006.08395 [math.CA], 2020.
- S. Ray, V. Sunkara, C. Schütte, M. Weber: How to calculate pH-dependent binding rates for receptor-ligand systems based on thermodynamic simulations with different binding motifs, ZIB report 20-18, 2020.
2017:
- L. Donati, M. Heida, M. Weber, B. Keller: Estimation of the infinitesimal generator by square-root approximation, Weierstraß Report Nr. 2416
- M.Weber, N. Ernst: A fuzzy-set theoretical framework for computing exit rates of rare events in potential-driven diffusion processes, arXiv:1708.00679
- M.Weber: Eigenvalues of non-reversible Markov chains -- A case study, ZIB report 17-13
2015:
- M.Weber, K. Fackeldey: G-PCCA: Spectral Clustering for Non-reversible Markov Chains, ZIB report 15-35
2012:
- B. Tunga, M.Weber: Free Energy Calculation Using Mayer Cluster Expansion and Fluctuation Free Integration, ZIB report 12-35
- M.Weber: The funnel trap paradox, ZIB report 12-12
2011:
- K. Fackeldey, S. Röblitz, O. Scharkoi, M.Weber: Soft vs Hard Metastable Conformations in Molecular Simulations, ZIB report 11-27
2010:
- M.Weber: A Subspace Approach to Molecular Markov State Models via an Infinitesimal Generator, ZIB report 09-27
2008:
- M.Weber: An efficient analysis of rare events in canonical ensemble dynamics, ZIB report 08-36
2007:
- M.Weber, R.Becker, R.Köppen, V.Durmaz: Classical hybrid Monte-Carlo simulations of the interconversion of hexabromocyclododecane, ZIB report 07-31
- M.Weber: Conformation-based transition state theory, ZIB report 07-18
- S.Kube, C.Lasser, M.Weber: Monte Carlo sampling and surface hopping, ZIB report 07-17
- M.Weber, S.Kube, A.Riemer, A.Bujotzek: Efficient Sampling of the Stationary Distribution of Metastable Dynamical Systems, ZIB report 07-03
2006:
- M.Weber, S.Kube, L.Walter, P.Deuflhard: Stable computation of probability densities for metastable dynamical systems, ZIB report 06-39
- H.Meyer, S.Moll, F.Cordes, M.Weber: ConFlow: A new space-based Application for complete Conformational Analysis of Molecules, ZIB report 06-31
- L.Walter, M.Weber: ConfJump: a fast biomolecular sampling method which drills tunnels through high mountains, ZIB report 06-26
- S.Kube, M.Weber: Identification of Metastabilities in Monomolecular Conformation Kinetics, ZIB report 06-01
2005:
- S.Kube, M.Weber: Conformation Kinetics as a Reduced Model for Transition Pathways, ZIB report 05-43
- M.Weber, H.Meyer: ZIBgridfree - Adaptive Conformation Analysis with qualified Support of Transition States and Thermodynamic Weights, ZIB report 05-17
2004:
- M.Weber, W.Rungsarityotin, A.Schliep: Perron Cluster Analysis and Its Connection to Graph Partitioning for Noisy Data, ZIB report 04-39
- M.Weber: Clustering by using a simplex structure, ZIB report 04-03
2003:
- M.Weber: Improved Perron Cluster Analysis, ZIB report 03-04
- P.Deuflhard, M.Weber: Robust Perron Cluster Analysis in Conformation Dynamics, ZIB report 03-19
2002:
- F.Cordes, M.Weber, J.Schmidt-Ehrenberg: Metastable Conformations via successive Perron-cluster cluster analysis of dihedrals, ZIB report 02-40
- M.Weber, T.Galliat: Characterization of Transition States in Conformational Dynamics using Fuzzy Sets, ZIB report 02-12