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Steinke, Thomas, Dr.

Steinke_T

Kontakt

Position
Abteilungsleitung
Raum
3156
Telefon
+49 30 84185-144
E-Mail
E-Mail
Website
https://www.zib.de/userpage/steinke/
Bereich
Parallel and Distributed Computing
Abteilung
Supercomputing
Arbeitsgruppen
Algorithms for Innovative Architectures
HPC Consulting

Projekte

Projekte als Leitung

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MODAL-HPCLab

Optimization of Data-Driven Workflows on Next-Gen Computer Architectures The HPCLab develops algorithmic and software solutions for the efficient implementation of data...

MODAL-HPCLab
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HighPerMeshes

Ziel des Projektes HighPerMeshes ist die Entwicklung eines in der Praxis einsetzbaren domänenspezifischen Frameworks zur effizienten, parallelen und skalierenden...

HighPerMeshes
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ProfiT-HPC

ProfiT-HPC aims at raising the awareness of HPC users in all fields of research on the importance of profiling and performance measurement to increase the efficiency and...

ProfiT-HPC
MODAL

Research Campus MODAL

The Forschungscampus ("Research Campus") MODAL is a platform for a public-private innovation partnership established by ZIB and Freie Universität Berlin together with...

Research Campus MODAL

Projekte als Mitglied

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HEOM

Photosynthesis fuels life on Earth by converting incoming solar radiation into chemical energy. Different strategies emerged during the evolution of natural...

HEOM
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FFMK

With their vastly increased number of functional components, exascale computers will be extremely vulnerable to system failures and performance losses due to imbalances...

FFMK
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LABIMIF

The amount of data in the areas of image processing and genome research in biomedicine, will greatly increase in the near future - also in view of the increasing trend...

LABIMIF
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ENHANCE

ENHANCE aims on a better integration and simplified usage of heterogeneous computing resources within current and upcoming computing systems. Heterogeneous systems...

ENHANCE

Publikationen

2022
A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs IEEE/ACM International Workshop on Heterogeneous High-performance Reconfigurable Computing, H2RC@SC 2022, Dallas, TX, USA, November 13-18, 2022, pp. 9-17, 2022 Steffen Christgau, Marius Knaust, Thomas Steinke BibTeX
DOI
An Early Scalability Study of Omni-Path Express ISC High Performance, 2022 Glenn Brook, Douglas Fuller, John Swinburne, Steffen Christgau, Matthias Läuter, Ronaldo Rodrigues Pelá, Stein Lewin, Tuma Christian, Thomas Steinke BibTeX
DOI
Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA FPGA '22: Proceedings of the 2022 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, pp. 180-189, 2022 Marius Knaust, Enrico Seiler, Knut Reinert, Thomas Steinke BibTeX
DOI
Efficient adaptivity for simulating cardiac electrophysiology with spectral deferred correction methods 2022 (under review) Fatemeh Chegini, Thomas Steinke, Martin Weiser BibTeX
arXiv
The HighPerMeshes Framework for Numerical Algorithms on Unstructured Grids Concurrency and Computation: Practice and Experience, 34(14), 2022 Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, F.J. Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, J. Teich, Martin Weiser, Florian Wende BibTeX
DOI
2021
HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids Euro-Par 2020: Parallel Processing Workshops., pp. 185-196, 2021 Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende BibTeX
DOI
Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs IWOCL'21: International Workshop on OpenCL, 2021 Tobias Baumann, Matthias Noack, Thomas Steinke BibTeX
DOI
2020
Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS 2020 IEEE/ACM Workshop on Memory Centric High Performance Computing (MCHPC), pp. 17-24, 2020, ISBN: 978-0-7381-1067-7 Steffen Christgau, Thomas Steinke BibTeX
DOI
Porting a Legacy CUDA Stencil Code to oneAPI 2020 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2020, New Orleans, LA, USA, May 18-22, 2020, pp. 359-367, 2020, ISBN: 978-1-7281-7445-7 Steffen Christgau, Thomas Steinke BibTeX
DOI
2019
Heterogeneous Active Messages for Offloading on the NEC SX-Aurora TSUBASA 2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Heterogeneity in Computing Workshop (HCW 2019), 2019 Matthias Noack, Erich Focht, Thomas Steinke BibTeX
2018
DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion 2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 19th IEEE Int. Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC 2018), pp. 947-956, 2018, ISBN: 978-1-5386-5555-9 Matthias Noack, Alexander Reinefeld, Tobias Kramer, Thomas Steinke BibTeX
DOI
OpenMP in VASP: Threading and SIMD International Journal of Quantum Chemistry, p. e25851, 2018 (in press) Florian Wende, Martijn Marsman, Jeongnim Kim, Fedor Vasilev, Zhengji Zhao, Thomas Steinke BibTeX
DOI
2017
KART - A Runtime Compilation Library for Improving HPC Application Performance High Performance Computing: ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P^3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017, Revised Selected Papers, Springer International Publishing, pp. 389-403, 2017 (preprint available as ZIB-Report 16-48) Matthias Noack, Florian Wende, Georg Zitzlsberger, Michael Klemm, Thomas Steinke PDF (ZIB-Report)
BibTeX
DOI
Porting the MPI-parallelized LES model PALM to multi-GPU systems and many integrated core processors: an experience report International Journal of Computational Science and Engineering. Special Issue on: Novel Strategies for Programming Accelerators, 2017 (accepted for publication) Helge Knoop, Tobias Gronemeier, Matthias Sühring, Peter Steinbach, Matthias Noack, Florian Wende, Thomas Steinke, Christoph Knigge, Siegfried Raasch, Klaus Ketelsen BibTeX
2016
Big Data Analytics on Cray XC Series DataWarp using Hadoop, Spark and Flink CUG Proceedings, 2016 Robert Schmidtke, Guido Laubender, Thomas Steinke PDF
BibTeX
FFMK: A Fast and Fault-tolerant Microkernel-based System for Exascale Computing SPPEXA Symposium 2016, 2016 Carsten Weinhold, Adam Lackorzynski, Jan Bierbaum, Martin Küttler, Maksym Planeta, Hermann Härtig, Amnon Shiloh, Ely Levy, Tal Ben-Nun, Amnon Barak, Thomas Steinke, Thorsten Schütt, Jan Fajerski, Alexander Reinefeld, Matthias Lieber, Wolfgang Nagel BibTeX
DOI
Fast In-Memory Checkpointing with POSIX API for Legacy Exascale-Applications SPPEXA Symposium 2016, 2016 J. Fajerski, Matthias Noack, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Thomas Steinke BibTeX
DOI
On Enhancing 3D-FFT Performance in VASP CUG Proceedings, 2016 Florian Wende, Martijn Marsman, Thomas Steinke PDF
BibTeX
Portable SIMD Performance with OpenMP* 4.x Compiler Directives Pierre-Francois Dutot, Denis Trystram (Eds.), Vol.Euro-Par 2016: Parallel Processing: 22nd International Conference on Parallel and Distributed Computing, LNCS, 2016, ISBN: 978-3-319-43659-3 Florian Wende, Matthias Noack, Thomas Steinke, Michael Klemm, Georg Zitzlsberger, Chris J. Newburn BibTeX
DOI
2015
Application Performance on a Cray XC30 Evaluation System with Xeon Phi Coprocessors at HLRN-III Cray User Group, 2015 Florian Wende, Matthias Noack, Thorsten Schütt, Stephen Sachs, Thomas Steinke BibTeX
HLRN-III at Zuse Institute Berlin Contemporary High Performance Computing: From Petascale toward Exascale, Volume Two, Jeffrey S. Vetter (Ed.), Chapman and Hall/CRC, pp. 81-114, 2015, ISBN: 9781498700627 Wolfgang Baumann, Guido Laubender, Matthias Läuter, Alexander Reinefeld, Christian Schimmel, Thomas Steinke, Christian Tuma, Stefan Wollny BibTeX
The Impact of Process Placement and Oversubscription on Application Performance: A Case Study for Exascale Computing Proceedings of the 3rd International Conference on Exascale Applications and Software, EASC 2015, A. Gray, L. Smith, M. Weiland (Eds.), pp. 13-18, 2015, ISBN: 978 -0-9 926615 -1-9 (preprint available as ZIB-Report 15-05) Florian Wende, Thomas Steinke, Alexander Reinefeld PDF
PDF (ZIB-Report)
BibTeX
2014
A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters SC '14: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. SC14, November 16-21, 2014, New Orleans, Louisiana, USA, 2014 Matthias Noack, Florian Wende, Thomas Steinke, Frank Cordes BibTeX
DOI
An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects Euro-Par 2013: Parallel Processing Workshops, pp. 249-258, Vol.8374, Lecture Notes in Computer Science, 2014 (preprint available as ZIB-Report 13-46) Sebastian Dreßler, Thomas Steinke PDF (ZIB-Report)
BibTeX
DOI
Concurrent Kernel Execution on Xeon Phi within Parallel Heterogeneous Workloads Euro-Par 2014: Parallel Processing. 20th International Conference, Porto, Portugal, August 25-29, 2014, Proceedings, pp. 788-799, Vol.8632, Lecture Notes in Computer Science, 2014 Florian Wende, Frank Cordes, Thomas Steinke BibTeX
DOI
Concurrent Kernel Offloading High Performance Parallelism Pearls, James Reinders, Jim Jeffers (Eds.), Morgan Kaufman, Elsevier, 2014, ISBN: 978-0128021187 (in press) Florian Wende, Thomas Steinke, Michael Klemm, Alexander Reinefeld BibTeX
Integration of Intel Xeon Phi Servers into the HLRN-III Complex: Experiences, Performance and Lessons Learned CUG2014 Proceedings, 2014 (preprint available as ZIB-Report 14-15) Florian Wende, Guido Laubender, Thomas Steinke PDF
PDF (ZIB-Report)
BibTeX
Multi-threaded Kernel Offloading to GPGPU Using Hyper-Q on Kepler Architecture ZIB-Report 14-19 Florian Wende, Thomas Steinke, Frank Cordes PDF
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The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations Journal of Chemical Theory and Computation, 10(6), pp. 2232-2245, 2014 Jens Krüger, Richard Grunzke, Sandra Gesing, Sebastian Breuers, André Brinkmann, Luis de la Garza, Oliver Kohlbacher, Martin Kruse, Wolfgang Nagel, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Charlotta Schärfe, Thomas Steinke, Tobias Schlemmer, Klaus Dieter Warzecha, Andreas Zink, Sonja Herres-Pawlis BibTeX
DOI
2013
Automated Analysis of Complex Data Objects 28th International Supercomputing Conference, ISC 2013, Leipzig, Germany, June 16-20, 2013, 2013 Sebastian Dreßler, Thomas Steinke BibTeX
Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing Journal of Parallel and Distributed Computing, 73(11), pp. 1415-1416, Simon McIntosh-Smith, Charles Gillan, Nico Sanna, Stan Scott, Thomas Steinke (Eds.), 2013 BibTeX
DOI
Standards-based metadata management for molecular simulations Concurrency and Computation: Practice and Experience, 2013 Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang Nagel, Malcolm Atkinson, Jens Krüger BibTeX
DOI
Swendsen-Wang Multi-Cluster Algorithm for the 2D/3D Ising Model on Xeon Phi and GPU Proceeding SC '13 Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis Article No. 83 ACM New York, NY, USA, 2013, 2013 (preprint available as ZIB-Report 13-44) Florian Wende, Thomas Steinke PDF (ZIB-Report)
BibTeX
DOI
2012
A Data Driven Science Gateway for Computational Workflows Proceedings of the UNICORE Summit, 2012 Richard Grunzke, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ralph Müller-Pfefferkorn, Patrick Schäfer, Bernd Schuller, Thomas Steinke, Andreas Zink BibTeX
A Novel Hybrid Approach to Automatically Determine Kernel Interface Data Volumes ZIB-Report 12-23 Sebastian Dreßler, Thomas Steinke PDF
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A Science Gateway Getting Ready for Serving the International Molecular Simulation Community Proceedings of Science, Vol.PoS(EGICF12-EMITC2)050, 2012 Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke BibTeX
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics Journal of Grid Computing, 2012 Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Akos Balasko, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Peter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher BibTeX
Energy consumption of CUDA kernels with varying thread topology Computer Science - Research and Development, pp. 1-9, 2012 Sebastian Dreßler, Thomas Steinke BibTeX
DOI
High-Performance Reconfigurable Computing - editorial for Special Issue of the International Journal of Reconfigurable Computing International Journal of Reconfigurable Computing, Vol.2012, pp. 1-2, 2012 Khaled Benkrid, Esam El-Araby, Miaoqing Huang, Kentaro Sano, Thomas Steinke BibTeX
DOI
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment Journal of Cheminformatics, 4(Suppl 1), p. 21, 2012 Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
DOI
On Improving the Performance of Multi-threaded CUDA Applications with Concurrent Kernel Execution by Kernel Reordering Application Accelerators in High Performance Computing (SAAHPC), 2012 Symposium on, pp. 74-83, 2012 Florian Wende, Frank Cordes, Thomas Steinke BibTeX
DOI
The MoSGrid Community – From National to International Scale EGI Community Forum 2012, 2012 Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, Andre Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke BibTeX
2011
A Molecular Simulation Grid as new tool for Computational Chemistry, Biology and Material Science Journal of Cheminformatics 2011, 3(Suppl 1), 2011 Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
DOI
A Science Gateway for Molecular Simulations EGI (European Grid Infrastructure) User Forum 2011, Book of Abstracts, pp. 94-95, 2011 Sandra Gesing, Peter Kacsuk, Miklos Kozlovszky, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Richard Grunzke, Sonja Herres-Pawlis, Jens Krüger, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Anna Szikszay Fabri, Klaus Dieter Warzecha, Martin Wewior, Oliver Kohlbacher BibTeX
Granular Security for a Science Gateway in Structural Bioinformatics Proc. IWSG-Life 2011, 2011 Sandra Gesing, Richard Grunzke, Akos Balasko, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Peter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher BibTeX
MoSGrid: Progress of Workflow driven Chemical Simulations Proc. of Grid Workflow Workshop 2011, Cologne, Germany, Vol.826, 2011 Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Johannes Schuster, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
Solutions for biomedical grid computing – Case studies from the D-Grid project Services@MediGRID Journal of Computational Science, -(0), 2011 Frank Dickmann, Jürgen Falkner, Wilfried Gunia, Jochen Hampe, Michael Hausmann, Alexander Herrmann, Nick Kepper, Tobias Knoch, Svenja Lauterbach, Jörg Lippert, Kathrin Peter, Eberhard Schmitt, Ulrich Schwardmann, Juri Solodenko, Dietmar Sommerfeld, Thomas Steinke, Anette Weisbecker, Ulrich Sax BibTeX
DOI
2010
Efficiency Considerations of Cauchy Reed-Solomon Implementations on Accelerator and Multi-Core Platforms Symposium on Application Accelerators in High Performance Computing (SAAHPC), 2010 Thomas Steinke, Kathrin Peter, Sebastian Borchert BibTeX
MoSGrid – A Molecular Simulation Grid as a new tool in Computational Chemistry, Biology and Material Science 6. German Conference on Chemoinformatics, 2010 Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, I. d. Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
Molecular Simulation Grid 6. German Conference on Chemoinformatics, 2010 Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
Opportunities and challenges for digital morphology Biology Direct, 5(1), p. 45, 2010 Alexander Ziegler, Malte Ogurreck, Thomas Steinke, Felix Beckmann, Steffen Prohaska, Andreas Ziegler BibTeX
DOI
PTGL: a database for secondary structure-based protein topologies Nucleic Acids Res., Vol.38, pp. D326-330, 2010 Patrick May, A. Kreuchwig, Thomas Steinke, Ina Koch BibTeX
2009
Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors Algorithms, 2(2), pp. 692-709, 2009 Raphael Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz Bujnicki, Robert Preissner BibTeX
DOI
MediGRID: Towards A User Friendly Secured Grid Infrastructure Future Generation Computer Systems (FGCS), 25(3), pp. 281-289, 2009 Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michael Vossberg, Fred Viezens, Anette Weisbecker BibTeX
DOI
Visualization in Health Grid Environments: A Novel Service and Business Approach GECON, pp. 150-159, Vol.5745, Lecture Notes in Computer Science, 2009 Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias Knoch, Ulrich Sax BibTeX
DOI
2007
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs GCCB, W. Dubitzky (Ed.), pp. 19-32, Vol.4360, Lecture Notes in Bioinformatics, 2007 Patrick May, Gunnar Klau, Markus Bauer, Thomas Steinke BibTeX
Density functional study of isoguanine tetrad and pentad sandwich complexes with alkali metal ions Journal of Molecular Modeling, 13(2), pp. 335-345, 2007 Michael Meyer, Thomas Steinke, Jürgen Sühnel BibTeX
Medical Image Processing in MediGRID German E-Science Conference, 2007 Samatha Kottha, Kathrin Peter, Thomas Steinke, Julian Bart, Jürgen Falkner, Anette Weisbecker, Fred Viezens, Yassene Mohammed, Ulrich Sax, Andreas Hoheisel, Thilo Ernst, Dietmar Sommerfeld, Dagmar Krefting, Michael Vossberg BibTeX
Molecular Dynamics with FPGAs: A Portable API Molecular Simulations with Hardware Accelerators: A Portable Interface Definition for FPGA Supported Acceleration International Supercomputing Conference 2007 (ISC 2007), 2007 Eric Stahlberg, Michael Babst, Daryl Popig, Thomas Steinke BibTeX
Molecular Simulations with Hardware Accelerators Reconfigurable Systems Summer Institute 2007 (RSSI 2007), 2007 Eric Stahlberg, Daryl Popig, Debie Ryle, Michael Babst, Mohammed Anderson, Thomas Steinke BibTeX
2006
Connectivity independent protein-structure alignment: a hierarchical approach BMC Bioinformatics, Vol.7, p. 510, 2006 Björn Kolbeck, Patrick May, T. Schmidt-Goenner, Thomas Steinke, E. Knapp BibTeX
Experiences with High-Level Programming of FPGAs on Cray XD1 CUG Proceedings, 2006 Thomas Steinke, Alexander Reinefeld BibTeX
THESEUS - Protein Structure Prediction at ZIB ZIB-Report 06-24 Patrick May, Thomas Steinke PDF
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ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services Euro-Par 2006 Workshops, Wolfgang Lehner, Norbert Meyer, Achim Streit, Craig Stewart (Eds.), pp. 1148-1158, Vol.4375, Lecture Notes in Computer Science, 2006 Patrick May, Hans-Christian Ehrlich, Thomas Steinke BibTeX
2005
Columba: an integrated database of proteins, structures, and annotations BMC Bioinformatics, Vol.6, pp. 81-92, 2005 Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser BibTeX
DOI
THESEUS – a parallel threading core for highthroughput protein structure prediction Proceedings of the 7th Congress of the World Association of Theoretically Orientes Chemists (WARTOC), 2005 Patrick May, B. Kallies, Thomas Steinke BibTeX
ZIB threading pipeline - A webservice-based, distributed structure prediction workflow. Proceedings of the German Conference on Bioinformatics (GCB), pp. 125-126, 2005 Patrick May, F. Krause, C. Ehrlich, J. Maaskola, Thomas Steinke BibTeX
2004
A distributed pipeline for structure prediction CASP6 Abstract Book, Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Gaeta, Italy, pp. 112-114, 2004 E. Michalsky, A. Goede, Robert Preissner, Patrick May, Thomas Steinke BibTeX
Columba: Multidimensional Data Integration of Protein Annotations Data Integration in the Life Sciences, First International Workshop, DILS 2004, Leipzig, Germany, March 25-26, Erhard Rahm (Ed.), pp. 156-171, Vol.2994, Lecture Notes in Computer Science, 2004 Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser BibTeX
DOI
THESEUS: A Parallel Threading Core Procs. 12th Internat. Conf. on Intelligent Systems for Mol. Bio. (ISMB) and 3rd European Conf. on Comp. Bio. (ECCB), Glasgow, p. 199, 2004 Patrick May, Thomas Steinke, Michael Meyer BibTeX
2003
Columba - A Database of Annotations of Protein Structure ECCB - Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics, C. Christophe, H.-P. Lenhof, M.-F. Sagot (Eds.), pp. 109-110, 2003 Kristian Rother, S. Trissl, H. Müller, Patrick May, R. Heek, Robert Preissner, Thomas Steinke, Ina Koch, Ulf Leser, Cornelius Frömmel BibTeX
How Does a Protein Work? BioTOPics J. of Biotechnology Berlin-Brandenburg, 18(2), pp. 4-5, 2003 Frank Cordes, Robert Preissner, Thomas Steinke BibTeX
2000
Density functional study of guanine and uracil quartets and of guanine quartet metal/ion complexes ZIB-Report 00-16 (Appeared in: J. Comput. Chem. 22, 109-124 (2001)) Michael Meyer, Thomas Steinke, Maria Brandl, Jürgen Sühnel PDF
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1997
Berliner Landeshöchstleistungsrechner Parallelrechner Cray T3D/T3E: Betrieb, Nutzung, Projekte, Perspektiven für den Ausbau ZIB-Report TR-97-08 Wolfgang Baumann, Hubert Busch, Jürgen Gottschewski, Thomas Steinke, Hinnerk Stüben PDF
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1996
Visualization of Vector Fields in Quantum Chemistry ZIB-Report SC-96-01 Detlev Stalling, Thomas Steinke PDF
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