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Home  |  Members  |  Steinke, Dr. Thomas

Steinke, Dr. Thomas

Funktion: 
Abteilungsleitung
Raum: 
3156
Bereich: 
Parallele und Verteilte Systeme
Abteilung: 
Supercomputing
Arbeitsgruppe: 
HPC Consulting
Algorithms for Innovative Architectures
Mail: 
steinkezib.de
Telefon: 
+49 30 84185 - 144
Fax: 
+49 30 84185 - 311
Personal website: 
http://www.zib.de/steinke

Projekte

Leitung

ENHANCE
MoSGrid
MedInfoGrid
GridChem
Lossy compression for more efficient communication in high performance computing
DoE for HPC
Research Campus MODAL
HighPerMeshes
ProfiT-HPC
MODAL-HPCLab
IPCC
LABIMIF

Mitglieder

ENHANCE
MoSGrid
MedInfoGrid
GridChem
HEOM
FFMK
LABIMIF

Publikationen

2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2007 2006 2005 2004 2003 2000 1997 1996

2022

Steffen Christgau, Marius Knaust, Thomas Steinke A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs IEEE/ACM International Workshop on Heterogeneous High-performance Reconfigurable Computing, H2RC@SC 2022, Dallas, TX, USA, November, 2022, 2022 BibTeX
Glenn Brook, Douglas Fuller, John Swinburne, Steffen Christgau, Matthias Läuter, Ronaldo Rodrigues Pelá, Stein Lewin, Tuma Christian, Thomas Steinke An Early Scalability Study of Omni-Path Express ISC High Performance, 2022 BibTeX
DOI
Marius Knaust, Enrico Seiler, Knut Reinert, Thomas Steinke Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA FPGA '22: Proceedings of the 2022 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, pp. 180-189, 2022 BibTeX
DOI
Fatemeh Chegini, Thomas Steinke, Martin Weiser Efficient adaptivity for simulating cardiac electrophysiology with spectral deferred correction methods 2022 (under review) BibTeX
Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, F.J. Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, J. Teich, Martin Weiser, Florian Wende The HighPerMeshes Framework for Numerical Algorithms on Unstructured Grids Concurrency and Computation: Practice and Experience, 34(14), 2022 BibTeX
DOI

2021

Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids Euro-Par 2020: Parallel Processing Workshops., pp. 185-196, 2021 BibTeX
DOI
Tobias Baumann, Matthias Noack, Thomas Steinke Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs IWOCL'21: International Workshop on OpenCL, 2021 BibTeX
DOI

2020

Steffen Christgau, Thomas Steinke Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS 2020 IEEE/ACM Workshop on Memory Centric High Performance Computing (MCHPC), pp. 17-24, 2020, ISBN: 978-0-7381-1067-7 BibTeX
DOI
Steffen Christgau, Thomas Steinke Porting a Legacy CUDA Stencil Code to oneAPI 2020 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2020, New Orleans, LA, USA, May 18-22, 2020, pp. 359-367, 2020, ISBN: 978-1-7281-7445-7 BibTeX
DOI

2019

Matthias Noack, Erich Focht, Thomas Steinke Heterogeneous Active Messages for Offloading on the NEC SX-Aurora TSUBASA 2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Heterogeneity in Computing Workshop (HCW 2019), 2019 BibTeX

2018

Matthias Noack, Alexander Reinefeld, Tobias Kramer, Thomas Steinke DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion 2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 19th IEEE Int. Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC 2018), pp. 947-956, 2018, ISBN: 978-1-5386-5555-9 BibTeX
DOI
Florian Wende, Martijn Marsman, Jeongnim Kim, Fedor Vasilev, Zhengji Zhao, Thomas Steinke OpenMP in VASP: Threading and SIMD International Journal of Quantum Chemistry, p. e25851, 2018 (in press) BibTeX
DOI

2017

Matthias Noack, Florian Wende, Georg Zitzlsberger, Michael Klemm, Thomas Steinke KART - A Runtime Compilation Library for Improving HPC Application Performance High Performance Computing: ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P^3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017, Revised Selected Papers, Springer International Publishing, pp. 389-403, 2017 (preprint available as ZIB-Report 16-48) PDF (ZIB-Report)
BibTeX
DOI
Helge Knoop, Tobias Gronemeier, Matthias Sühring, Peter Steinbach, Matthias Noack, Florian Wende, Thomas Steinke, Christoph Knigge, Siegfried Raasch, Klaus Ketelsen Porting the MPI-parallelized LES model PALM to multi-GPU systems and many integrated core processors: an experience report International Journal of Computational Science and Engineering. Special Issue on: Novel Strategies for Programming Accelerators, 2017 (accepted for publication on 2017-04-29) BibTeX

2016

Robert Schmidtke, Guido Laubender, Thomas Steinke Big Data Analytics on Cray XC Series DataWarp using Hadoop, Spark and Flink CUG Proceedings, 2016 PDF
BibTeX
Carsten Weinhold, Adam Lackorzynski, Jan Bierbaum, Martin Küttler, Maksym Planeta, Hermann Härtig, Amnon Shiloh, Ely Levy, Tal Ben-Nun, Amnon Barak, Thomas Steinke, Thorsten Schütt, Jan Fajerski, Alexander Reinefeld, Matthias Lieber, Wolfgang Nagel FFMK: A Fast and Fault-tolerant Microkernel-based System for Exascale Computing SPPEXA Symposium 2016, 2016 BibTeX
DOI
J. Fajerski, Matthias Noack, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Thomas Steinke Fast In-Memory Checkpointing with POSIX API for Legacy Exascale-Applications SPPEXA Symposium 2016, 2016 BibTeX
DOI
Florian Wende, Martijn Marsman, Thomas Steinke On Enhancing 3D-FFT Performance in VASP CUG Proceedings, 2016 PDF
BibTeX
Florian Wende, Matthias Noack, Thomas Steinke, Michael Klemm, Georg Zitzlsberger, Chris J. Newburn Portable SIMD Performance with OpenMP* 4.x Compiler Directives Pierre-Francois Dutot, Denis Trystram (Eds.), Vol.Euro-Par 2016: Parallel Processing: 22nd International Conference on Parallel and Distributed Computing, LNCS, 2016, ISBN: 978-3-319-43659-3 BibTeX
DOI

2015

Florian Wende, Matthias Noack, Thorsten Schütt, Stephen Sachs, Thomas Steinke Application Performance on a Cray XC30 Evaluation System with Xeon Phi Coprocessors at HLRN-III Cray User Group, 2015 BibTeX
Wolfgang Baumann, Guido Laubender, Matthias Läuter, Alexander Reinefeld, Christian Schimmel, Thomas Steinke, Christian Tuma, Stefan Wollny HLRN-III at Zuse Institute Berlin Contemporary High Performance Computing: From Petascale toward Exascale, Volume Two, Jeffrey S. Vetter (Ed.), Chapman and Hall/CRC, pp. 81-114, 2015, ISBN: 9781498700627 BibTeX
Florian Wende, Thomas Steinke, Alexander Reinefeld The Impact of Process Placement and Oversubscription on Application Performance: A Case Study for Exascale Computing Proceedings of the 3rd International Conference on Exascale Applications and Software, EASC 2015, A. Gray, L. Smith, M. Weiland (Eds.), pp. 13-18, 2015, ISBN: 978 -0-9 926615 -1-9 (preprint available as ZIB-Report 15-05) PDF
PDF (ZIB-Report)
BibTeX

2014

Matthias Noack, Florian Wende, Thomas Steinke, Frank Cordes A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters SC '14: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. SC14, November 16-21, 2014, New Orleans, Louisiana, USA, 2014 BibTeX
DOI
Sebastian Dreßler, Thomas Steinke An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects Euro-Par 2013: Parallel Processing Workshops, pp. 249-258, Vol.8374, Lecture Notes in Computer Science, 2014 (preprint available as ZIB-Report 13-46) PDF (ZIB-Report)
BibTeX
DOI
Florian Wende, Frank Cordes, Thomas Steinke Concurrent Kernel Execution on Xeon Phi within Parallel Heterogeneous Workloads Euro-Par 2014: Parallel Processing. 20th International Conference, Porto, Portugal, August 25-29, 2014, Proceedings, pp. 788-799, Vol.8632, Lecture Notes in Computer Science, 2014 BibTeX
DOI
Florian Wende, Thomas Steinke, Michael Klemm, Alexander Reinefeld Concurrent Kernel Offloading High Performance Parallelism Pearls, James Reinders, Jim Jeffers (Eds.), Morgan Kaufman, Elsevier, 2014, ISBN: 978-0128021187 (in press) BibTeX
Florian Wende, Guido Laubender, Thomas Steinke Integration of Intel Xeon Phi Servers into the HLRN-III Complex: Experiences, Performance and Lessons Learned CUG2014 Proceedings, 2014 (preprint available as ZIB-Report 14-15) PDF
PDF (ZIB-Report)
BibTeX
Florian Wende, Thomas Steinke, Frank Cordes Multi-threaded Kernel Offloading to GPGPU Using Hyper-Q on Kepler Architecture ZIB-Report 14-19 PDF
BibTeX
URN
Jens Krüger, Richard Grunzke, Sandra Gesing, Sebastian Breuers, André Brinkmann, Luis de la Garza, Oliver Kohlbacher, Martin Kruse, Wolfgang Nagel, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Charlotta Schärfe, Thomas Steinke, Tobias Schlemmer, Klaus Dieter Warzecha, Andreas Zink, Sonja Herres-Pawlis The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations Journal of Chemical Theory and Computation, 10(6), pp. 2232-2245, 2014 BibTeX
DOI

2013

Sebastian Dreßler, Thomas Steinke Automated Analysis of Complex Data Objects 28th International Supercomputing Conference, ISC 2013, Leipzig, Germany, June 16-20, 2013, 2013 BibTeX
Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing Journal of Parallel and Distributed Computing, 73(11), pp. 1415-1416, Simon McIntosh-Smith, Charles Gillan, Nico Sanna, Stan Scott, Thomas Steinke (Eds.), 2013 BibTeX
DOI
Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang Nagel, Malcolm Atkinson, Jens Krüger Standards-based metadata management for molecular simulations Concurrency and Computation: Practice and Experience, 2013 BibTeX
DOI
Florian Wende, Thomas Steinke Swendsen-Wang Multi-Cluster Algorithm for the 2D/3D Ising Model on Xeon Phi and GPU Proceeding SC '13 Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis Article No. 83 ACM New York, NY, USA, 2013, 2013 (preprint available as ZIB-Report 13-44) PDF (ZIB-Report)
BibTeX
DOI

2012

Richard Grunzke, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ralph Müller-Pfefferkorn, Patrick Schäfer, Bernd Schuller, Thomas Steinke, Andreas Zink A Data Driven Science Gateway for Computational Workflows Proceedings of the UNICORE Summit, 2012 BibTeX
Sebastian Dreßler, Thomas Steinke A Novel Hybrid Approach to Automatically Determine Kernel Interface Data Volumes ZIB-Report 12-23 PDF
BibTeX
URN
Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke A Science Gateway Getting Ready for Serving the International Molecular Simulation Community Proceedings of Science, Vol.PoS(EGICF12-EMITC2)050, 2012 BibTeX
Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Akos Balasko, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Peter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics Journal of Grid Computing, 2012 BibTeX
Sebastian Dreßler, Thomas Steinke Energy consumption of CUDA kernels with varying thread topology Computer Science - Research and Development, pp. 1-9, 2012 BibTeX
DOI
Khaled Benkrid, Esam El-Araby, Miaoqing Huang, Kentaro Sano, Thomas Steinke High-Performance Reconfigurable Computing - editorial for Special Issue of the International Journal of Reconfigurable Computing International Journal of Reconfigurable Computing, Vol.2012, pp. 1-2, 2012 BibTeX
DOI
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment Journal of Cheminformatics, 4(Suppl 1), p. 21, 2012 BibTeX
DOI
Florian Wende, Frank Cordes, Thomas Steinke On Improving the Performance of Multi-threaded CUDA Applications with Concurrent Kernel Execution by Kernel Reordering Application Accelerators in High Performance Computing (SAAHPC), 2012 Symposium on, pp. 74-83, 2012 BibTeX
DOI
Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, Andre Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke The MoSGrid Community – From National to International Scale EGI Community Forum 2012, 2012 BibTeX

2011

Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior A Molecular Simulation Grid as new tool for Computational Chemistry, Biology and Material Science Journal of Cheminformatics 2011, 3(Suppl 1), 2011 BibTeX
DOI
Sandra Gesing, Peter Kacsuk, Miklos Kozlovszky, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Richard Grunzke, Sonja Herres-Pawlis, Jens Krüger, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Anna Szikszay Fabri, Klaus Dieter Warzecha, Martin Wewior, Oliver Kohlbacher A Science Gateway for Molecular Simulations EGI (European Grid Infrastructure) User Forum 2011, Book of Abstracts, pp. 94-95, 2011 BibTeX
Sandra Gesing, Richard Grunzke, Akos Balasko, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Peter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher Granular Security for a Science Gateway in Structural Bioinformatics Proc. IWSG-Life 2011, 2011 BibTeX
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Johannes Schuster, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior MoSGrid: Progress of Workflow driven Chemical Simulations Proc. of Grid Workflow Workshop 2011, Cologne, Germany, Vol.826, 2011 BibTeX
Frank Dickmann, Jürgen Falkner, Wilfried Gunia, Jochen Hampe, Michael Hausmann, Alexander Herrmann, Nick Kepper, Tobias Knoch, Svenja Lauterbach, Jörg Lippert, Kathrin Peter, Eberhard Schmitt, Ulrich Schwardmann, Juri Solodenko, Dietmar Sommerfeld, Thomas Steinke, Anette Weisbecker, Ulrich Sax Solutions for biomedical grid computing – Case studies from the D-Grid project Services@MediGRID Journal of Computational Science, -(0), 2011 BibTeX
DOI

2010

Thomas Steinke, Kathrin Peter, Sebastian Borchert Efficiency Considerations of Cauchy Reed-Solomon Implementations on Accelerator and Multi-Core Platforms Symposium on Application Accelerators in High Performance Computing (SAAHPC), 2010 BibTeX
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, I. d. Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior MoSGrid – A Molecular Simulation Grid as a new tool in Computational Chemistry, Biology and Material Science 6. German Conference on Chemoinformatics, 2010 BibTeX
Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior Molecular Simulation Grid 6. German Conference on Chemoinformatics, 2010 BibTeX
Alexander Ziegler, Malte Ogurreck, Thomas Steinke, Felix Beckmann, Steffen Prohaska, Andreas Ziegler Opportunities and challenges for digital morphology Biology Direct, 5(1), p. 45, 2010 BibTeX
DOI
Patrick May, A. Kreuchwig, Thomas Steinke, Ina Koch PTGL: a database for secondary structure-based protein topologies Nucleic Acids Res., Vol.38, pp. D326-330, 2010 BibTeX

2009

Raphael Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz Bujnicki, Robert Preissner Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors Algorithms, 2(2), pp. 692-709, 2009 BibTeX
DOI
Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michael Vossberg, Fred Viezens, Anette Weisbecker MediGRID: Towards A User Friendly Secured Grid Infrastructure Future Generation Computer Systems (FGCS), 25(3), pp. 281-289, 2009 BibTeX
DOI
Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias Knoch, Ulrich Sax Visualization in Health Grid Environments: A Novel Service and Business Approach GECON, pp. 150-159, Vol.5745, Lecture Notes in Computer Science, 2009 BibTeX
DOI

2007

Patrick May, Gunnar Klau, Markus Bauer, Thomas Steinke Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs GCCB, W. Dubitzky (Ed.), pp. 19-32, Vol.4360, Lecture Notes in Bioinformatics, 2007 BibTeX
Michael Meyer, Thomas Steinke, Jürgen Sühnel Density functional study of isoguanine tetrad and pentad sandwich complexes with alkali metal ions Journal of Molecular Modeling, 13(2), pp. 335-345, 2007 BibTeX
Samatha Kottha, Kathrin Peter, Thomas Steinke, Julian Bart, Jürgen Falkner, Anette Weisbecker, Fred Viezens, Yassene Mohammed, Ulrich Sax, Andreas Hoheisel, Thilo Ernst, Dietmar Sommerfeld, Dagmar Krefting, Michael Vossberg Medical Image Processing in MediGRID German E-Science Conference, 2007 BibTeX
Eric Stahlberg, Michael Babst, Daryl Popig, Thomas Steinke Molecular Dynamics with FPGAs: A Portable API Molecular Simulations with Hardware Accelerators: A Portable Interface Definition for FPGA Supported Acceleration International Supercomputing Conference 2007 (ISC 2007), 2007 BibTeX
Eric Stahlberg, Daryl Popig, Debie Ryle, Michael Babst, Mohammed Anderson, Thomas Steinke Molecular Simulations with Hardware Accelerators Reconfigurable Systems Summer Institute 2007 (RSSI 2007), 2007 BibTeX

2006

Björn Kolbeck, Patrick May, T. Schmidt-Goenner, Thomas Steinke, E. Knapp Connectivity independent protein-structure alignment: a hierarchical approach BMC Bioinformatics, Vol.7, p. 510, 2006 BibTeX
Thomas Steinke, Alexander Reinefeld Experiences with High-Level Programming of FPGAs on Cray XD1 CUG Proceedings, 2006 BibTeX
Patrick May, Thomas Steinke THESEUS - Protein Structure Prediction at ZIB ZIB-Report 06-24 PDF
BibTeX
URN
Patrick May, Hans-Christian Ehrlich, Thomas Steinke ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services Euro-Par 2006 Workshops, Wolfgang Lehner, Norbert Meyer, Achim Streit, Craig Stewart (Eds.), pp. 1148-1158, Vol.4375, Lecture Notes in Computer Science, 2006 BibTeX

2005

Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser Columba: an integrated database of proteins, structures, and annotations BMC Bioinformatics, Vol.6, pp. 81-92, 2005 BibTeX
DOI
Patrick May, B. Kallies, Thomas Steinke THESEUS – a parallel threading core for highthroughput protein structure prediction Proceedings of the 7th Congress of the World Association of Theoretically Orientes Chemists (WARTOC), 2005 BibTeX
Patrick May, F. Krause, C. Ehrlich, J. Maaskola, Thomas Steinke ZIB threading pipeline - A webservice-based, distributed structure prediction workflow. Proceedings of the German Conference on Bioinformatics (GCB), pp. 125-126, 2005 BibTeX

2004

E. Michalsky, A. Goede, Robert Preissner, Patrick May, Thomas Steinke A distributed pipeline for structure prediction CASP6 Abstract Book, Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Gaeta, Italy, pp. 112-114, 2004 BibTeX
Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser Columba: Multidimensional Data Integration of Protein Annotations Data Integration in the Life Sciences, First International Workshop, DILS 2004, Leipzig, Germany, March 25-26, Erhard Rahm (Ed.), pp. 156-171, Vol.2994, Lecture Notes in Computer Science, 2004 BibTeX
DOI
Patrick May, Thomas Steinke, Michael Meyer THESEUS: A Parallel Threading Core Procs. 12th Internat. Conf. on Intelligent Systems for Mol. Bio. (ISMB) and 3rd European Conf. on Comp. Bio. (ECCB), Glasgow, p. 199, 2004 BibTeX

2003

Kristian Rother, S. Trissl, H. Müller, Patrick May, R. Heek, Robert Preissner, Thomas Steinke, Ina Koch, Ulf Leser, Cornelius Frömmel Columba - A Database of Annotations of Protein Structure ECCB - Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics, C. Christophe, H.-P. Lenhof, M.-F. Sagot (Eds.), pp. 109-110, 2003 BibTeX
Frank Cordes, Robert Preissner, Thomas Steinke How Does a Protein Work? BioTOPics J. of Biotechnology Berlin-Brandenburg, 18(2), pp. 4-5, 2003 BibTeX

2000

Michael Meyer, Thomas Steinke, Maria Brandl, Jürgen Sühnel Density functional study of guanine and uracil quartets and of guanine quartet metal/ion complexes ZIB-Report 00-16 (Appeared in: J. Comput. Chem. 22, 109-124 (2001)) PDF
BibTeX
URN

1997

Wolfgang Baumann, Hubert Busch, Jürgen Gottschewski, Thomas Steinke, Hinnerk Stüben Berliner Landeshöchstleistungsrechner Parallelrechner Cray T3D/T3E: Betrieb, Nutzung, Projekte, Perspektiven für den Ausbau ZIB-Report TR-97-08 PDF
BibTeX
URN

1996

Detlev Stalling, Thomas Steinke Visualization of Vector Fields in Quantum Chemistry ZIB-Report SC-96-01 PDF
BibTeX
URN
  • Forschung
    • Solutions for Individualized Medicine
    • Molecular and Biological Processes
    • Materials and Optical Processes
    • Combinatorics and MINLP
    • MSO for Multiscale Systems
    • Robust Solutions under Uncertainty
    • Digital Humanities
    • Efficient Infrastructure and Logistics
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    • Highly Parallel Computing
    • Scalable and Fault-Tolerant Algorithms
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