Kontakt
Position
Abteilungsleitung
Room
3156
Phone
+49 30 84185-144
Email
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Projects
Projects as Head
Projects as Member
Publications
2022
A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs
IEEE/ACM International Workshop on Heterogeneous High-performance Reconfigurable Computing, H2RC@SC 2022, Dallas, TX, USA, November 13-18, 2022, pp. 9-17, 2022
Steffen Christgau, Marius Knaust, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
An Early Scalability Study of Omni-Path Express
ISC High Performance, 2022
Glenn Brook, Douglas Fuller, John Swinburne, Steffen Christgau, Matthias Läuter, Ronaldo Rodrigues Pelá, Stein Lewin, Tuma Christian, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA
FPGA '22: Proceedings of the 2022 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, pp. 180-189, 2022
Marius Knaust, Enrico Seiler, Knut Reinert, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
Efficient adaptivity for simulating cardiac electrophysiology with spectral deferred correction methods
2022 (under review)
Fatemeh Chegini, Thomas Steinke, Martin Weiser
BibTeX
arXiv
Steinke, Thomas, Dr.
arXiv
The HighPerMeshes Framework for Numerical Algorithms on Unstructured Grids
Concurrency and Computation: Practice and Experience, 34(14), 2022
Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, F.J. Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, J. Teich, Martin Weiser, Florian Wende
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
2021
HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids
Euro-Par 2020: Parallel Processing Workshops., pp. 185-196, 2021
Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs
IWOCL'21: International Workshop on OpenCL, 2021
Tobias Baumann, Matthias Noack, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
2020
Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS
2020 IEEE/ACM Workshop on Memory Centric High Performance Computing (MCHPC), pp. 17-24, 2020, ISBN: 978-0-7381-1067-7
Steffen Christgau, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
Porting a Legacy CUDA Stencil Code to oneAPI
2020 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2020, New Orleans, LA, USA, May 18-22, 2020, pp. 359-367, 2020, ISBN: 978-1-7281-7445-7
Steffen Christgau, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
2019
Heterogeneous Active Messages for Offloading on the NEC SX-Aurora TSUBASA
2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Heterogeneity in Computing Workshop (HCW 2019), 2019
Matthias Noack, Erich Focht, Thomas Steinke
BibTeX
Steinke, Thomas, Dr.
2018
DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion
2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 19th IEEE Int. Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC 2018), pp. 947-956, 2018, ISBN: 978-1-5386-5555-9
Matthias Noack, Alexander Reinefeld, Tobias Kramer, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
OpenMP in VASP: Threading and SIMD
International Journal of Quantum Chemistry, p. e25851, 2018 (in press)
Florian Wende, Martijn Marsman, Jeongnim Kim, Fedor Vasilev, Zhengji Zhao, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
2017
KART - A Runtime Compilation Library for Improving HPC Application Performance
High Performance Computing: ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P^3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017, Revised Selected Papers, Springer International Publishing, pp. 389-403, 2017 (preprint available as ZIB-Report 16-48)
Matthias Noack, Florian Wende, Georg Zitzlsberger, Michael Klemm, Thomas Steinke
PDF (ZIB-Report)
BibTeX
DOI
Steinke, Thomas, Dr.
BibTeX
DOI
Porting the MPI-parallelized LES model PALM to multi-GPU systems and many integrated core processors: an experience report
International Journal of Computational Science and Engineering. Special Issue on: Novel Strategies for Programming Accelerators, 2017 (accepted for publication)
Helge Knoop, Tobias Gronemeier, Matthias Sühring, Peter Steinbach, Matthias Noack, Florian Wende, Thomas Steinke, Christoph Knigge, Siegfried Raasch, Klaus Ketelsen
BibTeX
Steinke, Thomas, Dr.
2016
Big Data Analytics on Cray XC Series DataWarp using Hadoop, Spark and Flink
CUG Proceedings, 2016
Robert Schmidtke, Guido Laubender, Thomas Steinke
PDF
BibTeX
Steinke, Thomas, Dr.
BibTeX
FFMK: A Fast and Fault-tolerant Microkernel-based System for Exascale Computing
SPPEXA Symposium 2016, 2016
Carsten Weinhold, Adam Lackorzynski, Jan Bierbaum, Martin Küttler, Maksym Planeta, Hermann Härtig, Amnon Shiloh, Ely Levy, Tal Ben-Nun, Amnon Barak, Thomas Steinke, Thorsten Schütt, Jan Fajerski, Alexander Reinefeld, Matthias Lieber, Wolfgang Nagel
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
Fast In-Memory Checkpointing with POSIX API for Legacy Exascale-Applications
SPPEXA Symposium 2016, 2016
J. Fajerski, Matthias Noack, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Thomas Steinke
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
On Enhancing 3D-FFT Performance in VASP
CUG Proceedings, 2016
Florian Wende, Martijn Marsman, Thomas Steinke
PDF
BibTeX
Steinke, Thomas, Dr.
BibTeX
Portable SIMD Performance with OpenMP* 4.x Compiler Directives
Pierre-Francois Dutot, Denis Trystram (Eds.), Vol.Euro-Par 2016: Parallel Processing: 22nd International Conference on Parallel and Distributed Computing, LNCS, 2016, ISBN: 978-3-319-43659-3
Florian Wende, Matthias Noack, Thomas Steinke, Michael Klemm, Georg Zitzlsberger, Chris J. Newburn
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
2015
Application Performance on a Cray XC30 Evaluation System with Xeon Phi Coprocessors at HLRN-III
Cray User Group, 2015
Florian Wende, Matthias Noack, Thorsten Schütt, Stephen Sachs, Thomas Steinke
BibTeX
Steinke, Thomas, Dr.
HLRN-III at Zuse Institute Berlin
Contemporary High Performance Computing: From Petascale toward Exascale, Volume Two, Jeffrey S. Vetter (Ed.), Chapman and Hall/CRC, pp. 81-114, 2015, ISBN: 9781498700627
Wolfgang Baumann, Guido Laubender, Matthias Läuter, Alexander Reinefeld, Christian Schimmel, Thomas Steinke, Christian Tuma, Stefan Wollny
BibTeX
Steinke, Thomas, Dr.
The Impact of Process Placement and Oversubscription on Application Performance: A Case Study for Exascale Computing
Proceedings of the 3rd International Conference on Exascale Applications and Software, EASC 2015, A. Gray, L. Smith, M. Weiland (Eds.), pp. 13-18, 2015, ISBN: 978 -0-9 926615 -1-9 (preprint available as ZIB-Report 15-05)
Florian Wende, Thomas Steinke, Alexander Reinefeld
PDF
PDF (ZIB-Report)
BibTeX
Steinke, Thomas, Dr.
PDF (ZIB-Report)
BibTeX
2014
A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters
SC '14: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. SC14, November 16-21, 2014, New Orleans, Louisiana, USA, 2014
Matthias Noack, Florian Wende, Thomas Steinke, Frank Cordes
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects
Euro-Par 2013: Parallel Processing Workshops, pp. 249-258, Vol.8374, Lecture Notes in Computer Science, 2014 (preprint available as ZIB-Report 13-46)
Sebastian Dreßler, Thomas Steinke
PDF (ZIB-Report)
BibTeX
DOI
Steinke, Thomas, Dr.
BibTeX
DOI
Concurrent Kernel Execution on Xeon Phi within Parallel Heterogeneous Workloads
Euro-Par 2014: Parallel Processing. 20th International Conference, Porto, Portugal, August 25-29, 2014, Proceedings, pp. 788-799, Vol.8632, Lecture Notes in Computer Science, 2014
Florian Wende, Frank Cordes, Thomas Steinke
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DOI
Steinke, Thomas, Dr.
DOI
Concurrent Kernel Offloading
High Performance Parallelism Pearls, James Reinders, Jim Jeffers (Eds.), Morgan Kaufman, Elsevier, 2014, ISBN: 978-0128021187 (in press)
Florian Wende, Thomas Steinke, Michael Klemm, Alexander Reinefeld
BibTeX
Steinke, Thomas, Dr.
Integration of Intel Xeon Phi Servers into the HLRN-III Complex: Experiences, Performance and Lessons Learned
CUG2014 Proceedings, 2014 (preprint available as ZIB-Report 14-15)
Florian Wende, Guido Laubender, Thomas Steinke
PDF
PDF (ZIB-Report)
BibTeX
Steinke, Thomas, Dr.
PDF (ZIB-Report)
BibTeX
Multi-threaded Kernel Offloading to GPGPU Using Hyper-Q on Kepler Architecture
ZIB-Report 14-19
Florian Wende, Thomas Steinke, Frank Cordes
PDF
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URN
Steinke, Thomas, Dr.
BibTeX
URN
The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations
Journal of Chemical Theory and Computation, 10(6), pp. 2232-2245, 2014
Jens Krüger, Richard Grunzke, Sandra Gesing, Sebastian Breuers, André Brinkmann, Luis de la Garza, Oliver Kohlbacher, Martin Kruse, Wolfgang Nagel, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Charlotta Schärfe, Thomas Steinke, Tobias Schlemmer, Klaus Dieter Warzecha, Andreas Zink, Sonja Herres-Pawlis
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
2013
Automated Analysis of Complex Data Objects
28th International Supercomputing Conference, ISC 2013, Leipzig, Germany, June 16-20, 2013, 2013
Sebastian Dreßler, Thomas Steinke
BibTeX
Steinke, Thomas, Dr.
Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing
Journal of Parallel and Distributed Computing, 73(11), pp. 1415-1416, Simon McIntosh-Smith, Charles Gillan, Nico Sanna, Stan Scott, Thomas Steinke (Eds.), 2013
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DOI
Steinke, Thomas, Dr.
DOI
Standards-based metadata management for molecular simulations
Concurrency and Computation: Practice and Experience, 2013
Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang Nagel, Malcolm Atkinson, Jens Krüger
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
Swendsen-Wang Multi-Cluster Algorithm for the 2D/3D Ising Model on Xeon Phi and GPU
Proceeding SC '13 Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis Article No. 83 ACM New York, NY, USA, 2013, 2013 (preprint available as ZIB-Report 13-44)
Florian Wende, Thomas Steinke
PDF (ZIB-Report)
BibTeX
DOI
Steinke, Thomas, Dr.
BibTeX
DOI
2012
A Data Driven Science Gateway for Computational Workflows
Proceedings of the UNICORE Summit, 2012
Richard Grunzke, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ralph Müller-Pfefferkorn, Patrick Schäfer, Bernd Schuller, Thomas Steinke, Andreas Zink
BibTeX
Steinke, Thomas, Dr.
A Novel Hybrid Approach to Automatically Determine Kernel Interface Data Volumes
ZIB-Report 12-23
Sebastian Dreßler, Thomas Steinke
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URN
Steinke, Thomas, Dr.
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URN
A Science Gateway Getting Ready for Serving the International Molecular Simulation Community
Proceedings of Science, Vol.PoS(EGICF12-EMITC2)050, 2012
Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke
BibTeX
Steinke, Thomas, Dr.
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics
Journal of Grid Computing, 2012
Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Akos Balasko, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Peter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher
BibTeX
Steinke, Thomas, Dr.
Energy consumption of CUDA kernels with varying thread topology
Computer Science - Research and Development, pp. 1-9, 2012
Sebastian Dreßler, Thomas Steinke
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DOI
Steinke, Thomas, Dr.
DOI
High-Performance Reconfigurable Computing - editorial for Special Issue of the International Journal of Reconfigurable Computing
International Journal of Reconfigurable Computing, Vol.2012, pp. 1-2, 2012
Khaled Benkrid, Esam El-Araby, Miaoqing Huang, Kentaro Sano, Thomas Steinke
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DOI
Steinke, Thomas, Dr.
DOI
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment
Journal of Cheminformatics, 4(Suppl 1), p. 21, 2012
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior
BibTeX
DOI
Steinke, Thomas, Dr.
DOI
On Improving the Performance of Multi-threaded CUDA Applications with Concurrent Kernel Execution by Kernel Reordering
Application Accelerators in High Performance Computing (SAAHPC), 2012 Symposium on, pp. 74-83, 2012
Florian Wende, Frank Cordes, Thomas Steinke
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DOI
Steinke, Thomas, Dr.
DOI
The MoSGrid Community – From National to International Scale
EGI Community Forum 2012, 2012
Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, Andre Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke
BibTeX
Steinke, Thomas, Dr.
2011
A Molecular Simulation Grid as new tool for Computational Chemistry, Biology and Material Science
Journal of Cheminformatics 2011, 3(Suppl 1), 2011
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior
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DOI
Steinke, Thomas, Dr.
DOI
A Science Gateway for Molecular Simulations
EGI (European Grid Infrastructure) User Forum 2011, Book of Abstracts, pp. 94-95, 2011
Sandra Gesing, Peter Kacsuk, Miklos Kozlovszky, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Richard Grunzke, Sonja Herres-Pawlis, Jens Krüger, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Anna Szikszay Fabri, Klaus Dieter Warzecha, Martin Wewior, Oliver Kohlbacher
BibTeX
Steinke, Thomas, Dr.
Granular Security for a Science Gateway in Structural Bioinformatics
Proc. IWSG-Life 2011, 2011
Sandra Gesing, Richard Grunzke, Akos Balasko, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Peter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher
BibTeX
Steinke, Thomas, Dr.
MoSGrid: Progress of Workflow driven Chemical Simulations
Proc. of Grid Workflow Workshop 2011, Cologne, Germany, Vol.826, 2011
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Johannes Schuster, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior
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Steinke, Thomas, Dr.
Solutions for biomedical grid computing – Case studies from the D-Grid project Services@MediGRID
Journal of Computational Science, -(0), 2011
Frank Dickmann, Jürgen Falkner, Wilfried Gunia, Jochen Hampe, Michael Hausmann, Alexander Herrmann, Nick Kepper, Tobias Knoch, Svenja Lauterbach, Jörg Lippert, Kathrin Peter, Eberhard Schmitt, Ulrich Schwardmann, Juri Solodenko, Dietmar Sommerfeld, Thomas Steinke, Anette Weisbecker, Ulrich Sax
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Steinke, Thomas, Dr.
DOI
2010
Efficiency Considerations of Cauchy Reed-Solomon Implementations on Accelerator and Multi-Core Platforms
Symposium on Application Accelerators in High Performance Computing (SAAHPC), 2010
Thomas Steinke, Kathrin Peter, Sebastian Borchert
BibTeX
Steinke, Thomas, Dr.
MoSGrid – A Molecular Simulation Grid as a new tool in Computational Chemistry, Biology and Material Science
6. German Conference on Chemoinformatics, 2010
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, I. d. Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior
BibTeX
Steinke, Thomas, Dr.
Molecular Simulation Grid
6. German Conference on Chemoinformatics, 2010
Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior
BibTeX
Steinke, Thomas, Dr.
Opportunities and challenges for digital morphology
Biology Direct, 5(1), p. 45, 2010
Alexander Ziegler, Malte Ogurreck, Thomas Steinke, Felix Beckmann, Steffen Prohaska, Andreas Ziegler
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DOI
Steinke, Thomas, Dr.
DOI
PTGL: a database for secondary structure-based protein topologies
Nucleic Acids Res., Vol.38, pp. D326-330, 2010
Patrick May, A. Kreuchwig, Thomas Steinke, Ina Koch
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Steinke, Thomas, Dr.
2009
Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors
Algorithms, 2(2), pp. 692-709, 2009
Raphael Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz Bujnicki, Robert Preissner
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Steinke, Thomas, Dr.
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MediGRID: Towards A User Friendly Secured Grid Infrastructure
Future Generation Computer Systems (FGCS), 25(3), pp. 281-289, 2009
Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michael Vossberg, Fred Viezens, Anette Weisbecker
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Steinke, Thomas, Dr.
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Visualization in Health Grid Environments: A Novel Service and Business Approach
GECON, pp. 150-159, Vol.5745, Lecture Notes in Computer Science, 2009
Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias Knoch, Ulrich Sax
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Steinke, Thomas, Dr.
DOI
2007
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs
GCCB, W. Dubitzky (Ed.), pp. 19-32, Vol.4360, Lecture Notes in Bioinformatics, 2007
Patrick May, Gunnar Klau, Markus Bauer, Thomas Steinke
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Steinke, Thomas, Dr.
Density functional study of isoguanine tetrad and pentad sandwich complexes with alkali metal ions
Journal of Molecular Modeling, 13(2), pp. 335-345, 2007
Michael Meyer, Thomas Steinke, Jürgen Sühnel
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Steinke, Thomas, Dr.
Medical Image Processing in MediGRID
German E-Science Conference, 2007
Samatha Kottha, Kathrin Peter, Thomas Steinke, Julian Bart, Jürgen Falkner, Anette Weisbecker, Fred Viezens, Yassene Mohammed, Ulrich Sax, Andreas Hoheisel, Thilo Ernst, Dietmar Sommerfeld, Dagmar Krefting, Michael Vossberg
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Steinke, Thomas, Dr.
Molecular Dynamics with FPGAs: A Portable API Molecular Simulations with Hardware Accelerators: A Portable Interface Definition for FPGA Supported Acceleration
International Supercomputing Conference 2007 (ISC 2007), 2007
Eric Stahlberg, Michael Babst, Daryl Popig, Thomas Steinke
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Steinke, Thomas, Dr.
Molecular Simulations with Hardware Accelerators
Reconfigurable Systems Summer Institute 2007 (RSSI 2007), 2007
Eric Stahlberg, Daryl Popig, Debie Ryle, Michael Babst, Mohammed Anderson, Thomas Steinke
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Steinke, Thomas, Dr.
2006
Connectivity independent protein-structure alignment: a hierarchical approach
BMC Bioinformatics, Vol.7, p. 510, 2006
Björn Kolbeck, Patrick May, T. Schmidt-Goenner, Thomas Steinke, E. Knapp
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Steinke, Thomas, Dr.
Experiences with High-Level Programming of FPGAs on Cray XD1
CUG Proceedings, 2006
Thomas Steinke, Alexander Reinefeld
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Steinke, Thomas, Dr.
THESEUS - Protein Structure Prediction at ZIB
ZIB-Report 06-24
Patrick May, Thomas Steinke
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Steinke, Thomas, Dr.
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ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services
Euro-Par 2006 Workshops, Wolfgang Lehner, Norbert Meyer, Achim Streit, Craig Stewart (Eds.), pp. 1148-1158, Vol.4375, Lecture Notes in Computer Science, 2006
Patrick May, Hans-Christian Ehrlich, Thomas Steinke
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Steinke, Thomas, Dr.
2005
Columba: an integrated database of proteins, structures, and annotations
BMC Bioinformatics, Vol.6, pp. 81-92, 2005
Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser
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Steinke, Thomas, Dr.
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THESEUS – a parallel threading core for highthroughput protein structure prediction
Proceedings of the 7th Congress of the World Association of Theoretically Orientes Chemists (WARTOC), 2005
Patrick May, B. Kallies, Thomas Steinke
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Steinke, Thomas, Dr.
ZIB threading pipeline - A webservice-based, distributed structure prediction workflow.
Proceedings of the German Conference on Bioinformatics (GCB), pp. 125-126, 2005
Patrick May, F. Krause, C. Ehrlich, J. Maaskola, Thomas Steinke
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Steinke, Thomas, Dr.
2004
A distributed pipeline for structure prediction
CASP6 Abstract Book, Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Gaeta, Italy, pp. 112-114, 2004
E. Michalsky, A. Goede, Robert Preissner, Patrick May, Thomas Steinke
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Steinke, Thomas, Dr.
Columba: Multidimensional Data Integration of Protein Annotations
Data Integration in the Life Sciences, First International Workshop, DILS 2004, Leipzig, Germany, March 25-26, Erhard Rahm (Ed.), pp. 156-171, Vol.2994, Lecture Notes in Computer Science, 2004
Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser
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Steinke, Thomas, Dr.
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THESEUS: A Parallel Threading Core
Procs. 12th Internat. Conf. on Intelligent Systems for Mol. Bio. (ISMB) and 3rd European Conf. on Comp. Bio. (ECCB), Glasgow, p. 199, 2004
Patrick May, Thomas Steinke, Michael Meyer
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Steinke, Thomas, Dr.
2003
Columba - A Database of Annotations of Protein Structure
ECCB - Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics, C. Christophe, H.-P. Lenhof, M.-F. Sagot (Eds.), pp. 109-110, 2003
Kristian Rother, S. Trissl, H. Müller, Patrick May, R. Heek, Robert Preissner, Thomas Steinke, Ina Koch, Ulf Leser, Cornelius Frömmel
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Steinke, Thomas, Dr.
How Does a Protein Work?
BioTOPics J. of Biotechnology Berlin-Brandenburg, 18(2), pp. 4-5, 2003
Frank Cordes, Robert Preissner, Thomas Steinke
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Steinke, Thomas, Dr.
2000
Density functional study of guanine and uracil quartets and of guanine quartet metal/ion complexes
ZIB-Report 00-16 (Appeared in: J. Comput. Chem. 22, 109-124 (2001))
Michael Meyer, Thomas Steinke, Maria Brandl, Jürgen Sühnel
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Steinke, Thomas, Dr.
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1997
Berliner Landeshöchstleistungsrechner Parallelrechner Cray T3D/T3E: Betrieb, Nutzung, Projekte, Perspektiven für den Ausbau
ZIB-Report TR-97-08
Wolfgang Baumann, Hubert Busch, Jürgen Gottschewski, Thomas Steinke, Hinnerk Stüben
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Steinke, Thomas, Dr.
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1996
Visualization of Vector Fields in Quantum Chemistry
ZIB-Report SC-96-01
Detlev Stalling, Thomas Steinke
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Steinke, Thomas, Dr.
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