Conrad, PD Dr. Tim

Funktion:
Abteilungsleitung
Raum:
4008
Bereich:
Abteilung:
Arbeitsgruppe:
Mail:
conrad
zib.de

Telefon:
+49 30 841 85 - 250
Fax:
+49 30 841 85 - 107
Projekte
Leitung
Publikationen
2023
2022
2021
2020
2019
2018
2017
2016
2015
2014
2013
2012
2004
2023 |
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Sahar Iravani, Tim Conrad | An Interpretable Deep Learning Approach for Biomarker Detection in LC-MS Proteomics Data | IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20(1), pp. 151-161, 2023 |
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Moritz Schubotz, Eloi Ferrer, Johannes Stegmüller, Daniel Mietchen, Olaf Teschke, Larissa Pusch, Tim Conrad | Bravo MaRDI: A Wikibase Knowledge Graph on Mathematics | Proceedings of the 4th Wikidata Workshop 2022 co-located with the 22st International Semantic Web Conference (ISWC2023), 2023 (accepted for publication) |
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Sydney Paltra, Tim Conrad | Effectiveness of Paxlovid - A Review | Frontiers in Public Health, 2023 (revision under review) |
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Amnon Bleich, Antje Linnemann, Benjamin Jaidi, Bjoern H Diem, Tim Conrad | Enhancing ECG Analysis of Implantable Cardiac Monitor Data: An Efficient Pipeline for Multi-Label Classification | Machine Learning and Knowledge Extraction, 5(4), 2023 |
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Sebastian Müller, Sydney Paltra, Jakob Rehmann, Kai Nagel, Tim Conrad | Explicit modeling of antibody levels for infectious disease simulations in the context of SARS-CoV-2 | iScience, 26(9), 2023 |
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Erhun Giray Tuncay, Rıza Cenk Erdur, Tim Conrad | Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: PERSONA | IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20(3), pp. 2064-2077, 2023 |
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Kateryna Melnyk, Kuba Weimann, Tim Conrad | Understanding microbiome dynamics via interpretable graph representation learning | Scientific Reports, Vol.13, p. 2058, 2023 |
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2022 |
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Mona Rams, Tim Conrad | Dictionary learning allows model-free pseudotime estimation of transcriptomics data | BMC Genomics, Vol.23, 2022 |
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Patrick E Obermeier, Albert Heim, Barbara Biere, Elias Hage, Maren Alchikh, Tim Conrad, Brunhilde Schweiger, Barbara A Rath | Linking digital surveillance and in-depth virology to study clinical patterns of viral respiratory infections in vulnerable patient populations | iScience, 25(5), 2022 |
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2021 |
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Nada Cvetkovic, Tim Conrad, Han Cheng Lie | A Convergent Discretisation Method for Transition Path Theory for Diffusion Processes | Multiscale Modeling & Simulation, 19(1), pp. 242-266, 2021 |
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Hanna Wulkow, Tim Conrad, Natasa Djurdjevac Conrad, Sebastian A. Müller, Kai Nagel, Christof Schütte | Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts | PLOS One, 16(4), 2021 |
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K. Weimann, Tim Conrad | Transfer Learning for ECG Classification | Scientific Reports, Vol.11, 2021 |
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YongTian Liang, Chengji Piao, Christine B. Beuschel, David Toppe, Laxmikanth Kollipara, Boris Bogdanow, Marta Maglione, Janine Lützkendorf, Jason Chun Kit See, Sheng Huang, Tim Conrad, Ulrich Kintscher, Frank Madeo, Fan Liu, Albert Sickmann, Stephan J. Sigrist | eIF5A hypusination, boosted by dietary spermidine, protects from premature brain aging and mitochondrial dysfunction | Cell Reports, 35(2), 2021 |
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2020 |
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Huy Le Duc, Tim Conrad | A light-weight and highly flexible software system for analyzing large bio-medical datasets | Future Generation Computer Systems, 2020 (under review) |
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Carmen Juds, Johannes Schmidt, Michael Weller, Thorid Lange, Tim Conrad, Hans Boerner | Combining Phage Display and Next-generation Sequencing for Materials Sciences: A Case Study on Probing Polypropylene Surfaces | Journal of the American Chemical Society, 142(24), pp. 10624-10628, 2020 |
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Mona Rams, Tim Conrad | Dictionary Learning for transcriptomics data reveals type-specific gene modules in a multi-class setting | it - Information Technology, 62(3-4), 2020 |
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Kateryna Melnyk, Grègoire Montavon, Stefan Klus, Tim Conrad | Graph Kernel Koopman Embedding for Human Microbiome Analysis | Applied Network Science, 5(96), 2020 |
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2019 |
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Maren Alchikh, Tim Conrad, Xiaolin Ma, Eeva K. Broberg, P. Penttinen, J. Reiche, Barbara Biere, Brunhilde Schweiger, Barbara Rath, Christian Hoppe | Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care | Clinical Microbiology and Infection, 25(3), pp. 380.e9-380.e16, 2019 |
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Mona Prendke | Comparison of 2D and 3D CNNs for Classification of Knee MRI | Bachelor's thesis, Freie Universität Berlin, Alexander Tack, Felix Ambellan (Advisors), 2019 |
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Sahar Iravani, Tim Conrad | Deep Learning for Proteomics Data for Feature Selection and Classification | Machine Learning and Knowledge Extraction. CD-MAKE 2019, A. Holzinger, P. Kieseberg, A. Tjoa, E. Weippl (Eds.), Vol.11713, Lecture Notes in Computer Science, 2019 |
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Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad | EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma | PLOS ONE, 14(1), 2019 |
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Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte | Learning chemical reaction networks from trajectory data | SIAM Journal on Applied Dynamical Systems (SIADS), 18(4), pp. 2000-2046, 2019 |
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2018 |
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Maren Alchikh, Tim Conrad, Christian Hoppe, Xiaolin Ma, Eeva K. Broberg, P. Penttinen, J. Reiche, Barbara Biere, Brunhilde Schweiger, Barbara Rath | Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care. Clinical Microbiology and Infection | Clinical Microbiology and Infection, pp. 1-1, 2018 (accepted for publication) |
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F. Kork, Tim Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, Felix Balzer | Associations of postoperative mortality with the time of day, week and year | Anaesthesia, 73(6), pp. 711-718, 2018 |
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F. Kork, Claudia Spies, Tim Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, Felix Balzer | Associations of postoperative mortality with the time of day, week and year | Anaesthesia, 2018 (accepted for publication) |
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Xiaolin Ma, Tim Conrad, Maren Alchikh, J. Reiche, Brunhilde Schweiger, Barbara Rath | Can we distinguish respiratory viral infections based on clinical features? A prospective pediatric cohort compared to systematic literature review | Medical Virology, 28(5), pp. 1-12, 2018 (accepted for publication) |
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Patrick Obermeier, A. Heim, Barbara Biere, E. Hage, Maren Alchikh, Tim Conrad, Brunhilde Schweiger, Barbara Rath | Clinical characteristics and disease severity associated with adenovirus infections in infants and children - discovery of a novel adenovirus, HAdV-D80 | Clinical Infectious Diseases, 2018 (under review) |
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Forough Marzban, Tim Conrad, Pouria Marban, Sahar Sodoudi | Estimation of the Near-Surface Air Temperature during the Day and Nighttime from MODIS in Berlin, Germany | International Journal of Advanced Remote Sensing and GIS, 7(1), pp. 2478-2517, 2018 |
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Victor Mireles, Tim Conrad | Reusable building blocks in biological systems | Journal of the Royal Society Interface, 15(149), pp. 1-10, 2018 (accepted for publication) |
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2017 |
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Fahrnaz Jayrannejad, Tim Conrad | Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining | Springer Lecture Notes in Artificial Intelligence, 2017 (in press) |
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Fahrnaz Jayrannejad, Tim Conrad | Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining | Springer Lecture Notes in Artificial Intelligence, p. studi, 2017 (accepted for publication) |
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L. Seeber, Tim Conrad, Christian Hoppe, Patrick Obermeier, X. Chen, K. Karsch, S. Muehlhans, Franziska Tief, Sindy Boettcher, S. Diedrich, Brunhilde Schweiger, Barbara Rath | Educating parents about the vaccination status of their children: A user-centered mobile application | Preventive Medicine Reports, Vol.5, pp. 241-250, 2017 (accepted for publication) |
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Borong Shao, Carlo Vittorio Cannistraci, Tim Conrad | Epithelial Mesenchymal Transition Network-Based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data | Genomics and Computational Biology, 3(3), p. e57, 2017 |
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Shao Borong, Carlo Cannistraci, Tim Conrad | Epithelial Mesenchymal Transition Network-based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data | Genomics and Computational Biology, 3(3), pp. 1-13, 2017 (accepted for publication) |
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Barbara Rath, Tim Conrad, Puja Myles, Maren Alchikh, Xiaolin Ma, Christian Hoppe, Franziska Tief, Xi Chen, Patrick Obermeier, Bron Kisler, Brunhilde Schweiger | Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials | Expert Review of Anti-infective Therapy, 15(6), pp. 545-568, 2017 |
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Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Benedikt Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte | Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data | BMC Bioinfomatics, 18(160), 2017 |
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Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Jan Vybiral, Gitta Kutyniok, Christof Schütte | Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data | BMC Bioinformatics, 18(160), pp. 1-20, 2017 |
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2016 |
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Tim Conrad, Xintian You | Acfs: accurate circRNA identification and quantification from NGS data | Nature Scientific Reports, Vol.6, 2016 |
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Franziska Tief, Christian Hoppe, L. Seeber, Patrick Obermeier, X. Chen, K. Karsch, S. Muehlhans, E. Adamou, Tim Conrad, Brunhilde Schweiger, T. Adam, Barbara Rath | An inception cohort study assessing the role of bacterial co-infections in children with influenza and ILI and a clinical decision model for stringent antibiotic use | Antiviral Therapy, Vol.21, pp. 413-424, 2016 |
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Victor Mireles, Tim Conrad | Decomposing biological systems into reusable modules reveals characteristic module size distributions | 2016 (under review) |
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Patrick Obermeier, S. Muehlhans, Christian Hoppe, K. Karsch, Franziska Tief, L. Seeber, X. Chen, Tim Conrad, Sindy Boettcher, S. Diedrich, Barbara Rath | Enabling Precision Medicine With Digital Case Classification at the Point-of-Care | EBioMedicine, Vol.4, pp. 191-196, 2016 |
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Borong Shao, Tim Conrad | Epithelial Mesenchymal Transition Regulatory Network-based Feature Selection in Lung Cancer Prognosis Prediction | Lecture Notes in Computer Science (LNCS), pp. 1235-146, Vol.9656, 2016 |
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Iliusi Vega, Christof Schütte, Tim Conrad | Finding metastable states in real-world time series with recurrence networks | Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016 |
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Christian Hoppe, Patrick Obermeier, S. Mehlhans, Maren Alchikh, L. Seeber, Franziska Tief, K. Karsch, X. Chen, Sindy Boettcher, S. Diedrich, Tim Conrad | Innovative Digital Tools and Surveillance Systems for the Timely Detection of Adverse Events at the Point of Care: A Proof-of-Concept Study | Drug Safety, 39(10), pp. 977-988, 2016 |
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2015 |
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Tim Conrad, Leonie Wallmeyer, Mona Rams, Stefan Börno, Bernd Timmermann, Sarah Hedtrich | Analyzing the Influence of Filaggrin on Other Skin Associated Genes in a Filaggrin Deficient Skin Model Using the Core Network Approach | Technical Report, 2015 |
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Tim Conrad, Borong Shao | Are NoSQL data stores useful for bioinformatics researchers? | International Journal on Recent and Innovation Trends in Computing and Communication (IJRITCC), 3(3), pp. 1704-1708, 2015 |
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Tim Conrad, K. Karsch, Patrick Obermeier, L. Seeber, X. Chen, Franziska Tief, S. Muehlhans, Christian Hoppe, Sindy Boettcher, S. Diedrich, Barbara Rath | Human Parechovirus Infections Associated with Seizures and Rash: A Syndromic Surveillance Study in Children | The Pediatric Infectious Disease Journal, 34(10), 2015 |
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Tim Conrad, Victor Mireles | Minimum-overlap clusterings and the sparsity of overcomplete decompositions of binary matrics | Procedia Computer Science, Vol.51, pp. 2967-2971, 2015 |
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Tim Conrad, Matthias Lenga | Non-convex regularization for supervised learning | Technical Report, 2015 |
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2014 |
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Marco Sarich, Natasa Djurdjevac Conrad, Sharon Bruckner, Tim Conrad, Christof Schütte | Modularity revisited: A novel dynamics-based concept for decomposing complex networks | Journal of Computational Dynamics, 1(1), pp. 191-212, 2014 |
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Iliusi Vega, Christof Schütte, Tim Conrad | SAIMeR: Self-adapted method for the identification of metastable states in real-world time series | ZIB-Report 14-16 |
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Christof Schütte, Tim Conrad | Showcase 3: Information-based medicine | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 66-67, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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2013 |
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Pooja Gupta, Norbert Reinsch, Andreas Spötter, Tim Conrad, Kaspar Bienefeld | Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera) | BMC Genetics, 14(36), 2013 |
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Tim Conrad, Sharon Bruckner, Bastian Kayser | Finding Modules in Networks with Non-modular Regions | Lecture Notes in Computer Science (Proceedings of SEA 2013), Vol.7933, pp. 188-199, 2013 |
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Tim Conrad, Alexander Benedikt Leichtle, Uta Ceglarek, P. Weinert, C.T. Nakas, Jean-Marc Nuoffer, Julia Kase, Helmut Witzigmann, Joachim Thiery, Georg Martin Fiedler | Pancreatic carcinoma, pancreatitis, and healthy controls - metabolite models in a three-class diagnostic dilemma | Metabolomics, 9(3), pp. 677-687, 2013 |
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Tim Conrad, Barbara Rath, Franziska Tief, K. Karsch, S. Muehlhans, Patrick Obermeier, E. Adamou, X. Chen, L. Seeber, Ch. Peiser, Christian Hoppe, Max von Kleist, Brunhilde Schweiger | Towards a personalized approach to managing of influenza infections in infants and children - food for thought and a note on oseltamivir | Infectious Disorders - Drug Targets, 13(1), pp. 25-33, 2013 |
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2012 |
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Natasa Djurdjevac Conrad, Stefanie Bruckner, Tim Conrad, Christof Schütte | Random Walks on Complex Modular Networks | Journal of Numerical Analysis, Industrial and Applied Mathematics, 6(1-2), pp. 29-50, 2012 |
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Tim Conrad, Alexander Benedikt Leichtle, Jean-Marc Nuoffer, Uta Ceglarek, Julia Kase, Helmut Witzigmann, Joachim Thiery, Georg Martin Fiedler | Serum amino acid profiles and their alterations in colorectal cancer | Metabolomics, 2012 |
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Pooja Gupta, Tim Conrad, Andreas Spötter, Norbert Reinsch, Kaspar Bienefeld | Simulating a base population in honey bee for molecular genetic studies | Genetics Selection Evolution, 2012 |
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2004 |
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Tim Conrad | Metabolic Pathways | Doctoral thesis, Monash University Melbourne, unknown (Advisor), 2004 |
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Tim Conrad | New Appraches for Visualizing and Analyzing Metabolic Pathways | Proceedings of the Second Australian Undergraduate Students? Computing Conference, 2004 |
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