Skip to main content
Home
  • Impressum und Datenschutz
  • English
  • Deutsch
Print
-A +A
  • Research
    • Solutions for Individualized Medicine
    • Molecular and Biological Processes
    • Materials and Optical Processes
    • Combinatorics and MINLP
    • MSO for Multiscale Systems
    • Robust Solutions under Uncertainty
    • Digital Humanities
    • Efficient Infrastructure and Logistics
    • Large-Scale Data Management, Curation & Analysis
    • Highly Parallel Computing
    • Scalable and Fault-Tolerant Algorithms
    • Publications
    • Books
    • Features
  • Institute
    • Research Campus MODAL
    • Intel IPCC Research Center
    • Joint Lab Optics
    • Oracle Center of Excellence
    • Organization
    • Organizational Chart
    • Committees and Regulations
    • ZIB in Numbers
    • Spin-Offs
    • Konrad Zuse
    • Hall of Fame
  • Research Services
    • Supercomputing
    • Data Archive
    • KOBV
    • BRAIN
    • Library
    • Software
    • Room Reservation
  • Members
  • Training & Outreach
    • Graduate Students
    • Scholarships
    • Lectures
    • Trainee Openings
    • Schools
    • Press
    • Public Events
    • Guided Tours
    • Alumni
    • Topics for theses
  • Contact
Home  |  Members  |  Conrad, Prof. Dr. Tim

Conrad, Prof. Dr. Tim

Position: 
Guest
Room: 
4011
Division: 
Mathematics for Life and Materials Sciences
Department: 
Visual Data Analysis
Research group: 
Bioinformatics in Medicine
Mail: 
conradzib.de
Phone: 
+49 30 841 85 - 250
Fax: 
+49 30 841 85 - 269

Projects

Head

Sparse Compressed Sensing Based Classifiers for -Omics Mass-Data
MODAL-MedLab
Research Campus MODAL
Fluoromath - Unsupervised Deep Learning to assess Hand Diseases

Member

Sparse Compressed Sensing Based Classifiers for -Omics Mass-Data
High-throughput Analysis of Large Medical Data

Publications

2019 2018 2017 2016 2015 2014 2013 2012 2004

2019

Mona Prendke Comparison of 2D and 3D CNNs for Classification of Knee MRI Bachelor's thesis, Freie Universität Berlin, Alexander Tack, Felix Ambellan (Advisors), 2019 PDF
BibTeX
URN
Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma PLOS ONE, 2019 (accepted for publication on 2019-01-18) BibTeX
DOI
Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte Learning chemical reaction networks from trajectory data SIAM Journal on Applied Dynamical Systems (SIADS), 2019 BibTeX
arXiv

2018

M. Alchikh, T. Conrad, Ch. Hoppe, X. Ma, E. Broberg, P. Penttinen, J. Reiche, B. Biere, B. Schweiger, B. Rath Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care. Clinical Microbiology and Infection Clinical Microbiology and Infection, pp. 1-1, 2018 (accepted for publication) BibTeX
DOI
F. Kork, C. Spies, T. Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, F. Balzer Associations of postoperative mortality with the time of day, week and year Anaesthesia, 2018 (accepted for publication) BibTeX
F. Kork, Tim Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, F. Balzer Associations of postoperative mortality with the time of day, week and year Anaesthesia, 2018 (in press) BibTeX
X. Ma, T. Conrad, M. Alchikh, J. Reiche, B. Schweiger, B. Rath Can we distinguish respiratory viral infections based on clinical features? A prospective pediatric cohort compared to systematic literature review Medical Virology, 28(5), pp. 1-12, 2018 (accepted for publication) BibTeX
DOI
P. Obermeier, A. Heim, B. Biere, E. Hage, M. Alchikh, T. Conrad, B. Schweiger, B. Rath Clinical characteristics and disease severity associated with adenovirus infections in infants and children - discovery of a novel adenovirus, HAdV-D80 Clinical Infectious Diseases, 2018 (under review) BibTeX
Forough Marzban, Tim Conrad, Pouria Marban, Sahar Sodoudi Estimation of the Near-Surface Air Temperature during the Day and Nighttime from MODIS in Berlin, Germany International Journal of Advanced Remote Sensing and GIS, 7(1), pp. 2478-2517, 2018 BibTeX
DOI
Victor Mireles, T. Conrad Reusable building blocks in biological systems Journal of the Royal Society Interface, 15(149), pp. 1-10, 2018 (accepted for publication) BibTeX
DOI

2017

Fahrnaz Jayrannejad, Tim Conrad Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining Springer Lecture Notes in Artificial Intelligence, 2017 (in press) BibTeX
Fahrnaz Jayrannejad, T. Conrad Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining Springer Lecture Notes in Artificial Intelligence, p. studi, 2017 (accepted for publication) BibTeX
L. Seeber, Conrad T., Ch. Hoppe, P. Obermeier, X. Chen, K. Karsch, S. Muehlhans, F. Tief, S. Boettcher, S. Diedrich, B. Schweiger, B. Rath Educating parents about the vaccination status of their children: A user-centered mobile application Preventive Medicine Reports, Vol.5, pp. 241-250, 2017 (accepted for publication) BibTeX
DOI
L. Seeber, Tim Conrad, Ch. Hoppe, P. Obermeier, X. Chen, K. Karsch, S. Muehlhans, F. Tief, S. Boettcher, S. Diedrich, B. Schweiger, B. Rath Educating parents about the vaccination status of their children: A user-centred mobile application Preventive Medicine Reports, Vol.5, pp. 241-250, 2017 BibTeX
DOI
Borong Shao, Carlo Vittorio Cannistraci, Tim Conrad Epithelial Mesenchymal Transition Network-Based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data Genomics and Computational Biology, 3(3), p. e57, 2017 BibTeX
DOI
Shao Borong, Carlo Cannistraci, T. Conrad Epithelial Mesenchymal Transition Network-based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data Genomics and Computational Biology, 3(3), pp. 1-13, 2017 (accepted for publication) BibTeX
DOI
Barbara Rath, Tim Conrad, Puja Myles, Maren Alchikh, Xiaolin Ma, Christian Hoppe, Franziska Tief, Xi Chen, Patrick Obermeier, Bron Kisler, Brunhilde Schweiger Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials Expert Review of Anti-infective Therapy, 15(6), pp. 545-568, 2017 BibTeX
DOI
B. Rath, T. Conrad, P. Myles, M. Alchikh, X. Ma, Ch. Hoppe, F. Tief, P. Obermeier, J. Reiche, B. Kisler, B. Schweiger Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials Expert Review of Anti-infective Therapy (IERZ), 15(6), pp. 545-568, 2017 (accepted for publication) BibTeX
DOI
Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data BMC Bioinfomatics, 18(160), 2017 BibTeX
DOI
T. Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Jan Vybiral, Gitta Kutyniok, Ch. Schütte Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data BMC Bioinformatics, 18(160), pp. 1-20, 2017 BibTeX
DOI

2016

Tim Conrad, Xintian You Acfs: accurate circRNA identification and quantification from NGS data Nature Scientific Reports, Vol.6, 2016 BibTeX
DOI
F. Tief, Ch. Hoppe, L. Seeber, P. Obermeier, X. Chen, K. Karsch, S. Muehlhans, E. Adamou, T. Conrad, B. Schweiger, T. Adam, B. Rath An inception cohort study assessing the role of bacterial co-infections in children with influenza and ILI and a clinical decision model for stringent antibiotic use Antiviral Therapy, Vol.21, pp. 413-424, 2016 BibTeX
DOI
Victor Mireles, Tim Conrad Decomposing biological systems into reusable modules reveals characteristic module size distributions 2016 (under review) BibTeX
P. Obermeier, S. Muehlhans, Ch. Hoppe, K. Karsch, F. Tief, L. Seeber, X. Chen, T. Conrad, S. Boettcher, S. Diedrich, B. Rath Enabling Precision Medicine With Digital Case Classification at the Point-of-Care EBioMedicine, Vol.4, pp. 191-196, 2016 BibTeX
DOI
Borong Shao, Tim Conrad Epithelial Mesenchymal Transition Regulatory Network-based Feature Selection in Lung Cancer Prognosis Prediction Lecture Notes in Computer Science (LNCS), Vol.9656, pp. 1235-146, 2016 BibTeX
DOI
Iliusi Vega, Christof Schütte, Tim Conrad Finding metastable states in real-world time series with recurrence networks Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016 BibTeX
DOI
C. Hoppe, P. Obermeier, S. Mehlhans, M. Alchikh, L. Seeber, F. Tief, K. Karsch, X. Chen, S. Boettcher, S. Diedrich, T. Conrad Innovative Digital Tools and Surveillance Systems for the Timely Detection of Adverse Events at the Point of Care: A Proof-of-Concept Study Drug Safety, 39(10), pp. 977-988, 2016 BibTeX
DOI

2015

Tim Conrad, Leonie Wallmeyer, Mona Rams, Stefan Börno, Bernd Timmermann, Sarah Hedtrich Analyzing the Influence of Filaggrin on Other Skin Associated Genes in a Filaggrin Deficient Skin Model Using the Core Network Approach Technical Report, 2015 BibTeX
Tim Conrad, Borong Shao Are NoSQL data stores useful for bioinformatics researchers? International Journal on Recent and Innovation Trends in Computing and Communication (IJRITCC), 3(3), pp. 1704-1708, 2015 BibTeX
DOI
Tim Conrad, K. Karsch, P. Obermeier, L. Seeber, X. Chen, F. Tief, S. Muehlhans, Ch. Hoppe, S. Boettcher, S. Diedrich, B. Rath Human Parechovirus Infections Associated with Seizures and Rash: A Syndromic Surveillance Study in Children The Pediatric Infectious Disease Journal, 34(10), 2015 BibTeX
Tim Conrad, Victor Mireles Minimum-overlap clusterings and the sparsity of overcomplete decompositions of binary matrics Procedia Computer Science, Vol.51, pp. 2967-2971, 2015 BibTeX
DOI
Tim Conrad, Matthias Lenga Non-convex regularization for supervised learning Technical Report, 2015 PDF
BibTeX

2014

Marco Sarich, Natasa Djurdjevac, Sharon Bruckner, Tim Conrad, Christof Schütte Modularity revisited: A novel dynamics-based concept for decomposing complex networks Journal of Computational Dynamics, 1(1), pp. 191-212, 2014 PDF
BibTeX
DOI
I. Vega, Christof Schütte, Tim Conrad SAIMeR: Self-adapted method for the identification of metastable states in real-world time series ZIB-Report 14-16 PDF
BibTeX
URN
Christof Schütte, Tim Conrad Showcase 3: Information-based medicine MATHEON-Mathematics for Key Technologies, Vol.1, pp. 66-67, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 BibTeX

2013

Pooja Gupta, Norbert Reinsch, Andreas Spötter, Tim Conrad, Kaspar Bienefeld Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera) BMC Genetics, 14(36), 2013 BibTeX
DOI
Tim Conrad, Sharon Bruckner, Bastian Kayser Finding Modules in Networks with Non-modular Regions Lecture Notes in Computer Science (Proceedings of SEA 2013), Vol.7933, pp. 188-199, 2013 BibTeX
DOI
Tim Conrad, A. Leichtle, U. Ceglarek, P. Weinert, C.T. Nakas, J.-M. Nuoffer, J. Kase, H. Witzigmann, J. Thiery, G.M. Fiedler Pancreatic carcinoma, pancreatitis, and healthy controls - metabolite models in a three-class diagnostic dilemma Metabolomics, 9(3), pp. 677-687, 2013 BibTeX
DOI
Tim Conrad, B. Rath, F. Tief, K. Karsch, S. Muehlhans, P. Obermeier, E. Adamou, X. Chen, L. Seeber, Ch. Peiser, Ch. Hoppe, M. von Kleist, B. Schweiger Towards a personalized approach to managing of influenza infections in infants and children - food for thought and a note on oseltamivir Infectious Disorders - Drug Targets, 13(1), pp. 25-33, 2013 BibTeX

2012

Tim Conrad, Christof Schütte, Stephan Aiche, Knut Reinert, Diana Hildebrand, Hartmunt Schlüter Inferring Proteolytic Processes from Mass Spectrometry Time Series Data Using Degradation Graphs PLoS ONE, 7(7), 2012 BibTeX
DOI
Natasa Djurdjevac, Stefanie Bruckner, Tim Conrad, Christof Schütte Random Walks on Complex Modular Networks Journal of Numerical Analysis, Industrial and Applied Mathematics, 6(1-2), pp. 29-50, 2012 BibTeX
Tim Conrad, Alexander Benedikt Leichtle, Jean-Marc Nuoffer, Uta Ceglarek, Julia Kase, Helmut Witzigmann, Joachim Thiery, Georg Martin Fiedler Serum amino acid profiles and their alterations in colorectal cancer Metabolomics, 2012 BibTeX
DOI
Pooja Gupta, Tim Conrad, Andreas Spötter, Norbert Reinsch, Kaspar Bienefeld Simulating a base population in honey bee for molecular genetic studies Genetics Selection Evolution, 2012 BibTeX
DOI

2004

Tim Conrad Metabolic Pathways Doctoral thesis, Monash University Melbourne, unknown (Advisor), 2004 BibTeX
Tim Conrad New Appraches for Visualizing and Analyzing Metabolic Pathways Proceedings of the Second Australian Undergraduate Students? Computing Conference, 2004 BibTeX
  • Research
    • Solutions for Individualized Medicine
    • Molecular and Biological Processes
    • Materials and Optical Processes
    • Combinatorics and MINLP
    • MSO for Multiscale Systems
    • Robust Solutions under Uncertainty
    • Digital Humanities
    • Efficient Infrastructure and Logistics
    • Large-Scale Data Management, Curation & Analysis
    • Highly Parallel Computing
    • Scalable and Fault-Tolerant Algorithms
    • Publications
    • Books
    • Features
  • Institute
    • Research Campus MODAL
    • Intel IPCC Research Center
    • Joint Lab Optics
    • Oracle Center of Excellence
    • Organization
    • Organizational Chart
    • Committees and Regulations
    • ZIB in Numbers
    • Spin-Offs
    • Konrad Zuse
    • Hall of Fame
  • Research Services
    • Supercomputing
    • Data Archive
    • KOBV
    • BRAIN
    • Library
    • Software
    • Room Reservation
  • Members
  • Training & Outreach
    • Graduate Students
    • Scholarships
    • Lectures
    • Trainee Openings
    • Schools
    • Press
    • Public Events
    • Guided Tours
    • Alumni
    • Topics for theses
  • Contact