Conrad, Prof. Dr. Tim

Position:
Guest
Room:
4011
Department:
Research group:
Mail:
conrad
zib.de

Phone:
+49 30 841 85 - 250
Fax:
+49 30 841 85 - 269
Publications
2019
2018
2017
2016
2015
2014
2013
2012
2004
2019 |
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Mona Prendke | Comparison of 2D and 3D CNNs for Classification of Knee MRI | Bachelor's thesis, Freie Universität Berlin, Alexander Tack, Felix Ambellan (Advisors), 2019 |
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Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad | EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma | PLOS ONE, 2019 (accepted for publication on 2019-01-18) |
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Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte | Learning chemical reaction networks from trajectory data | SIAM Journal on Applied Dynamical Systems (SIADS), 2019 |
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2018 |
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M. Alchikh, T. Conrad, Ch. Hoppe, X. Ma, E. Broberg, P. Penttinen, J. Reiche, B. Biere, B. Schweiger, B. Rath | Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care. Clinical Microbiology and Infection | Clinical Microbiology and Infection, pp. 1-1, 2018 (accepted for publication) |
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F. Kork, C. Spies, T. Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, F. Balzer | Associations of postoperative mortality with the time of day, week and year | Anaesthesia, 2018 (accepted for publication) |
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F. Kork, Tim Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, F. Balzer | Associations of postoperative mortality with the time of day, week and year | Anaesthesia, 2018 (in press) |
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X. Ma, T. Conrad, M. Alchikh, J. Reiche, B. Schweiger, B. Rath | Can we distinguish respiratory viral infections based on clinical features? A prospective pediatric cohort compared to systematic literature review | Medical Virology, 28(5), pp. 1-12, 2018 (accepted for publication) |
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P. Obermeier, A. Heim, B. Biere, E. Hage, M. Alchikh, T. Conrad, B. Schweiger, B. Rath | Clinical characteristics and disease severity associated with adenovirus infections in infants and children - discovery of a novel adenovirus, HAdV-D80 | Clinical Infectious Diseases, 2018 (under review) |
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Forough Marzban, Tim Conrad, Pouria Marban, Sahar Sodoudi | Estimation of the Near-Surface Air Temperature during the Day and Nighttime from MODIS in Berlin, Germany | International Journal of Advanced Remote Sensing and GIS, 7(1), pp. 2478-2517, 2018 |
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Victor Mireles, T. Conrad | Reusable building blocks in biological systems | Journal of the Royal Society Interface, 15(149), pp. 1-10, 2018 (accepted for publication) |
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2017 |
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Fahrnaz Jayrannejad, Tim Conrad | Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining | Springer Lecture Notes in Artificial Intelligence, 2017 (in press) |
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Fahrnaz Jayrannejad, T. Conrad | Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining | Springer Lecture Notes in Artificial Intelligence, p. studi, 2017 (accepted for publication) |
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L. Seeber, Conrad T., Ch. Hoppe, P. Obermeier, X. Chen, K. Karsch, S. Muehlhans, F. Tief, S. Boettcher, S. Diedrich, B. Schweiger, B. Rath | Educating parents about the vaccination status of their children: A user-centered mobile application | Preventive Medicine Reports, Vol.5, pp. 241-250, 2017 (accepted for publication) |
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L. Seeber, Tim Conrad, Ch. Hoppe, P. Obermeier, X. Chen, K. Karsch, S. Muehlhans, F. Tief, S. Boettcher, S. Diedrich, B. Schweiger, B. Rath | Educating parents about the vaccination status of their children: A user-centred mobile application | Preventive Medicine Reports, Vol.5, pp. 241-250, 2017 |
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Borong Shao, Carlo Vittorio Cannistraci, Tim Conrad | Epithelial Mesenchymal Transition Network-Based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data | Genomics and Computational Biology, 3(3), p. e57, 2017 |
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Shao Borong, Carlo Cannistraci, T. Conrad | Epithelial Mesenchymal Transition Network-based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data | Genomics and Computational Biology, 3(3), pp. 1-13, 2017 (accepted for publication) |
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Barbara Rath, Tim Conrad, Puja Myles, Maren Alchikh, Xiaolin Ma, Christian Hoppe, Franziska Tief, Xi Chen, Patrick Obermeier, Bron Kisler, Brunhilde Schweiger | Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials | Expert Review of Anti-infective Therapy, 15(6), pp. 545-568, 2017 |
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B. Rath, T. Conrad, P. Myles, M. Alchikh, X. Ma, Ch. Hoppe, F. Tief, P. Obermeier, J. Reiche, B. Kisler, B. Schweiger | Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials | Expert Review of Anti-infective Therapy (IERZ), 15(6), pp. 545-568, 2017 (accepted for publication) |
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Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte | Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data | BMC Bioinfomatics, 18(160), 2017 |
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T. Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Jan Vybiral, Gitta Kutyniok, Ch. Schütte | Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data | BMC Bioinformatics, 18(160), pp. 1-20, 2017 |
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2016 |
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Tim Conrad, Xintian You | Acfs: accurate circRNA identification and quantification from NGS data | Nature Scientific Reports, Vol.6, 2016 |
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F. Tief, Ch. Hoppe, L. Seeber, P. Obermeier, X. Chen, K. Karsch, S. Muehlhans, E. Adamou, T. Conrad, B. Schweiger, T. Adam, B. Rath | An inception cohort study assessing the role of bacterial co-infections in children with influenza and ILI and a clinical decision model for stringent antibiotic use | Antiviral Therapy, Vol.21, pp. 413-424, 2016 |
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Victor Mireles, Tim Conrad | Decomposing biological systems into reusable modules reveals characteristic module size distributions | 2016 (under review) |
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P. Obermeier, S. Muehlhans, Ch. Hoppe, K. Karsch, F. Tief, L. Seeber, X. Chen, T. Conrad, S. Boettcher, S. Diedrich, B. Rath | Enabling Precision Medicine With Digital Case Classification at the Point-of-Care | EBioMedicine, Vol.4, pp. 191-196, 2016 |
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Borong Shao, Tim Conrad | Epithelial Mesenchymal Transition Regulatory Network-based Feature Selection in Lung Cancer Prognosis Prediction | Lecture Notes in Computer Science (LNCS), Vol.9656, pp. 1235-146, 2016 |
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Iliusi Vega, Christof Schütte, Tim Conrad | Finding metastable states in real-world time series with recurrence networks | Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016 |
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C. Hoppe, P. Obermeier, S. Mehlhans, M. Alchikh, L. Seeber, F. Tief, K. Karsch, X. Chen, S. Boettcher, S. Diedrich, T. Conrad | Innovative Digital Tools and Surveillance Systems for the Timely Detection of Adverse Events at the Point of Care: A Proof-of-Concept Study | Drug Safety, 39(10), pp. 977-988, 2016 |
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2015 |
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Tim Conrad, Leonie Wallmeyer, Mona Rams, Stefan Börno, Bernd Timmermann, Sarah Hedtrich | Analyzing the Influence of Filaggrin on Other Skin Associated Genes in a Filaggrin Deficient Skin Model Using the Core Network Approach | Technical Report, 2015 |
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Tim Conrad, Borong Shao | Are NoSQL data stores useful for bioinformatics researchers? | International Journal on Recent and Innovation Trends in Computing and Communication (IJRITCC), 3(3), pp. 1704-1708, 2015 |
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Tim Conrad, K. Karsch, P. Obermeier, L. Seeber, X. Chen, F. Tief, S. Muehlhans, Ch. Hoppe, S. Boettcher, S. Diedrich, B. Rath | Human Parechovirus Infections Associated with Seizures and Rash: A Syndromic Surveillance Study in Children | The Pediatric Infectious Disease Journal, 34(10), 2015 |
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Tim Conrad, Victor Mireles | Minimum-overlap clusterings and the sparsity of overcomplete decompositions of binary matrics | Procedia Computer Science, Vol.51, pp. 2967-2971, 2015 |
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Tim Conrad, Matthias Lenga | Non-convex regularization for supervised learning | Technical Report, 2015 |
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2014 |
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Marco Sarich, Natasa Djurdjevac, Sharon Bruckner, Tim Conrad, Christof Schütte | Modularity revisited: A novel dynamics-based concept for decomposing complex networks | Journal of Computational Dynamics, 1(1), pp. 191-212, 2014 |
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I. Vega, Christof Schütte, Tim Conrad | SAIMeR: Self-adapted method for the identification of metastable states in real-world time series | ZIB-Report 14-16 |
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Christof Schütte, Tim Conrad | Showcase 3: Information-based medicine | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 66-67, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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2013 |
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Pooja Gupta, Norbert Reinsch, Andreas Spötter, Tim Conrad, Kaspar Bienefeld | Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera) | BMC Genetics, 14(36), 2013 |
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Tim Conrad, Sharon Bruckner, Bastian Kayser | Finding Modules in Networks with Non-modular Regions | Lecture Notes in Computer Science (Proceedings of SEA 2013), Vol.7933, pp. 188-199, 2013 |
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Tim Conrad, A. Leichtle, U. Ceglarek, P. Weinert, C.T. Nakas, J.-M. Nuoffer, J. Kase, H. Witzigmann, J. Thiery, G.M. Fiedler | Pancreatic carcinoma, pancreatitis, and healthy controls - metabolite models in a three-class diagnostic dilemma | Metabolomics, 9(3), pp. 677-687, 2013 |
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Tim Conrad, B. Rath, F. Tief, K. Karsch, S. Muehlhans, P. Obermeier, E. Adamou, X. Chen, L. Seeber, Ch. Peiser, Ch. Hoppe, M. von Kleist, B. Schweiger | Towards a personalized approach to managing of influenza infections in infants and children - food for thought and a note on oseltamivir | Infectious Disorders - Drug Targets, 13(1), pp. 25-33, 2013 |
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2012 |
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Tim Conrad, Christof Schütte, Stephan Aiche, Knut Reinert, Diana Hildebrand, Hartmunt Schlüter | Inferring Proteolytic Processes from Mass Spectrometry Time Series Data Using Degradation Graphs | PLoS ONE, 7(7), 2012 |
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Natasa Djurdjevac, Stefanie Bruckner, Tim Conrad, Christof Schütte | Random Walks on Complex Modular Networks | Journal of Numerical Analysis, Industrial and Applied Mathematics, 6(1-2), pp. 29-50, 2012 |
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Tim Conrad, Alexander Benedikt Leichtle, Jean-Marc Nuoffer, Uta Ceglarek, Julia Kase, Helmut Witzigmann, Joachim Thiery, Georg Martin Fiedler | Serum amino acid profiles and their alterations in colorectal cancer | Metabolomics, 2012 |
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Pooja Gupta, Tim Conrad, Andreas Spötter, Norbert Reinsch, Kaspar Bienefeld | Simulating a base population in honey bee for molecular genetic studies | Genetics Selection Evolution, 2012 |
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2004 |
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Tim Conrad | Metabolic Pathways | Doctoral thesis, Monash University Melbourne, unknown (Advisor), 2004 |
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Tim Conrad | New Appraches for Visualizing and Analyzing Metabolic Pathways | Proceedings of the Second Australian Undergraduate Students? Computing Conference, 2004 |
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