A quantitative understanding of the heart function is crucial for several cardiac therapies, ranging from ablation or resynchronization therapy to valve replacement. The electrical myocard excitation is described by the mono- or bidomain equations, a set of reaction-diffusion equations for the transmembrane voltage and a set of pointwise ODEs for the ion concentrations and ion channels. Due to very different temporal and spatial scales involved, the numerical simulation is rather expensive. In this project we develop different structure-exploiting integration methods for mono- and bidomain equations, in order to reduce the computational effort while controlling the discretization error.

Multilevel Methods for Scar Detection

In close collaboration with USI, we investigate the use of heterogeneous multilevel methods consisting of monodomain fine model and eikonal coarse model within a recursive multigrid trust region approach for identifying myocardial scars from endocardial mapping data.

MICROCARD

Since 2021, we participate in the MICROCARD project funded by the EU Joint Undertaking HPC and BMBF. The project aims at developing numerical software able to simulate cardiac excitation with a cellular resolution at organ scale on advanced HPC exascale systems.

Within MICROCARD, we work on energy-efficient time discretization schemes, hierarchical and lateral model coupling for multilevel solution and boundary conditions, respectively, and compressed communication in domain decomposition preconditioners.

Publications

2024
Electrograms in a Cardiac Cell-by-Cell Model 2024 (under review) Joshua Steyer, Fatemeh Chegini, Tomas Starý, Mark Potse, Martin Weiser, Axel Loewe BibTeX
Adaptive Cardiac Simulation
2023
Continuity of Microscopic Cardiac Conduction in a Computational Cell-by-Cell Model 2023 Computing in Cardiology Conference (CinC), Vol.50, 2023 Joshua Steyer, Fatemeh Chegini, Mark Potse, Axel Loewe, Martin Weiser BibTeX
DOI
Adaptive Cardiac Simulation
Convergence analysis of BDDC preconditioners for hybrid DG discretizations of the cardiac cell-by-cell model SIAM Journal on Scientific Computing, 45(6), pp. A2836-A2857, 2023 Ngoc Huynh, Fatemeh Chegini, Luca Pavarino, Martin Weiser, Simone Scacchi BibTeX
arXiv
Adaptive Cardiac Simulation
Efficient numerical methods for simulating cardiac electrophysiology with cellular resolution 10th Int. Conf. Computational Methods for Coupled Problems in Science and Engineering 2023, 2023 Fatemeh Chegini, Algiane Froehly, Ngoc Mai Monica Huynh, Luca Pavarino, Mark Potse, Simone Scacchi, Martin Weiser BibTeX
DOI
Adaptive Cardiac Simulation
On the Accuracy of Eikonal Approximations in Cardiac Electrophysiology in the Presence of Fibrosis Functional Imaging and Modeling of the Heart. FIMH 2023., Vol.13958, Lecture Notes in Computer Science, 2023 Lia Gander, Rolf Krause, Martin Weiser, Francisco Costabal, Simone Pezzuto BibTeX
DOI
Adaptive Cardiac Simulation
2022
Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods CMBE22 - 7th International Conference on Computational & Mathematical Biomedical Engineering, pp. 528-531, 2022 Martin Weiser, Fatemeh Chegini BibTeX
Adaptive Cardiac Simulation
Efficient adaptivity for simulating cardiac electrophysiology with spectral deferred correction methods 2022 (under review) Fatemeh Chegini, Thomas Steinke, Martin Weiser BibTeX
arXiv
Adaptive Cardiac Simulation
Higher-order time integration using spectral deferred correction method (SDC) in a cell by cell discretization of cardiac excitation 2022 Martin Weiser, Fatemeh Chegini BibTeX
DOI
Adaptive Cardiac Simulation
Multilevel optimization algorithm for Inverse Problem in Electrocardiography Doctoral thesis, Università della Svizzera italiana, Rolf Krause, Martin Weiser (Advisors), 2022 Fatemeh Chegini BibTeX
Adaptive Cardiac Simulation
Quantitative Analysis of Nonlinear MultifidelityOptimization for Inverse Electrophysiology Domain Decomposition Methods in Science and Engineering XXVI, pp. 65-76, 2022 Fatemeh Chegini, Alena Kopanicakova, Martin Weiser, Rolf Krause BibTeX
Adaptive Cardiac Simulation
2021
Efficient Identification of Scars using Heterogeneous Model Hierarchies EP Europace, Vol.23, pp. i113-i122, 2021 Fatemeh Chegini, Alena Kopanicakova, Rolf Krause, Martin Weiser BibTeX
DOI
Adaptive Cardiac Simulation
2020
Numerische Mathematik 3. Adaptive Lösung partieller Differentialgleichungen de Gruyter, 2, 2020, ISBN: 978-3-11-069168-9 Peter Deuflhard, Martin Weiser BibTeX
DOI
Adaptive Cardiac Simulation
2018
Novel relocation methods for automatic external defibrillator improve out-of-hospital cardiac arrest coverage under limited resources Resuscitation, pp. 83-89, 2018 Nicholas J. Tierney, Antonietta Mira, J. Jost Reinhold, Martin Weiser, Roman Burkart, Claudio Benvenuti, Angelo Auricchio BibTeX
DOI
Adaptive Cardiac Simulation
2017
Spectral Deferred Correction methods for adaptive electro-mechanical coupling in cardiac simulation G. Russo et al.(eds.) Progress in Industrial Mathematics at ECMI 2014, pp. 321-328, 2017 (preprint available as ZIB-Report 14-22) Martin Weiser, Simone Scacchi PDF (ZIB-Report)
BibTeX
DOI
Adaptive Cardiac Simulation
2016
Coupling of Monodomain and Eikonal Models for Cardiac Electrophysiology Master's thesis, Freie Universität Berlin, Martin Weiser (Advisor), 2016 (preprint available as ZIB-Report 16-50) Adrian Sali PDF (ZIB-Report)
BibTeX
Adaptive Cardiac Simulation
2015
Faster SDC convergence on non-equidistant grids by DIRK sweeps BIT Numerical Mathematics, 55(4), pp. 1219-1241, 2015 (preprint available as ZIB-Report 13-30) Martin Weiser PDF (ZIB-Report)
BibTeX
DOI
Adaptive Cardiac Simulation
2014
Lossy Compression in Optimal Control of Cardiac Defibrillation J. Sci. Comput., 60(1), pp. 35-59, 2014 (preprint available as ZIB-Report 13-26) Sebastian Götschel, Chamakuri Nagaiah, Karl Kunisch, Martin Weiser PDF (ZIB-Report)
BibTeX
DOI
Adaptive Cardiac Simulation
2010
Benchmarking Solvers of the Monodomain Equation in Cardiac Electrophysiological Modeling Biomed. Engineer., Vol.55, pp. 99-102, 2010 Mathias Wilhelms, Gunnar Seemann, Martin Weiser, Olaf Dössel BibTeX
DOI
Adaptive Cardiac Simulation
Delayed Residual Compensation for Bidomain Equations AIP Conference Proceedings, Vol.1281, pp. 419-422, 2010 Martin Weiser BibTeX
DOI
Adaptive Cardiac Simulation
On Efficiency and Accuracy in Cardioelectric Simulation Progress in Industrial Mathematics at ECMI 2008, pp. 371-376, E. Wilson, A. Fitt, H. Ockendon, J. Norbury (Eds.), Springer, 2010 (preprint available as ZIB-Report 08-41) Martin Weiser, Bodo Erdmann, Peter Deuflhard PDF (ZIB-Report)
BibTeX
Adaptive Cardiac Simulation
2009
Adaptive Finite Element Simulation of Ventricular Dynamics J. Computing and Visualization in Science, Vol.12, pp. 201-205, 2009 Peter Deuflhard, Bodo Erdmann, Rainer Roitzsch, Glenn Terje Lines BibTeX
Adaptive Cardiac Simulation
Adaptive Tetrahedral Meshing for Personalized Cardiac Simulations Proc. MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling (CI2BM), pp. 149-158, 2009 Hans Lamecker, Tomaso Mansi, Jatin Relan, Florence Billet, Maxime Sermesant, Nicholas Ayache, Hervé Delingette BibTeX
Adaptive Cardiac Simulation
Pointwise Nonlinear Scaling for Reaction-Diffusion Equations Appl. Num. Math., 59(8), pp. 1858-1869, 2009 (preprint available as ZIB-Report 07-45) Martin Weiser PDF (ZIB-Report)
BibTeX
Adaptive Cardiac Simulation