2022
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Sophie Fischer-Holzhausen, Susanna Röblitz |
Hormonal regulation of ovarian follicle growth in humans: Model-based exploration of cycle variability and parameter sensitivities
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Journal of Theoretical Biology, 2022 |
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Sophie Fischer-Holzhausen, Susanna Röblitz |
Mathematical modelling of follicular growth and ovarian stimulation
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Current Opinion in Endocrine and Metabolic Research, 2022 |
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Julia Plöntzke, Mascha Berg, Rainald Ehrig, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz |
Model Based Exploration of Hypokalemia in Dairy Cows
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Scientific Reports, Vol.12, 19781, 2022 |
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Anna-Simone Frank, Alexander Sikorski, Susanna Röblitz |
Spectral clustering of Markov chain transition matrices with complex eigenvalues
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Journal of Computational and Applied Mathematics, 2022 (under review) |
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arXiv
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Tillmann Krüger, Brigitte Leeners, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Harald Engler, Susanna Röblitz, Helge Frieling, Christopher Sinke, Kirsten Jahn |
The androgen system across the menstrual cycle: Hormonal, (epi-)genetic and psychometric alterations
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Physiology and Behavior, 2022 |
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2021
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Mascha Berg, Julia Plöntzke, Heike Siebert, Susanna Röblitz |
Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations
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Bulletin of Mathematical Biology, 83(121), pp. 1-25, 2021 |
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Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz |
Objective priors in the empirical Bayes framework
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Scandinavian Journal of Statistics, 48(4), pp. 1212-1233, 2021 |
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2020
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Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz |
Model-based exploration of the impact of glucose metabolism on the estrous cycle dynamics in dairy cows
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Biology Direct, Vol.15, 2020 |
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2019
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Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz |
A Mathematical Model for the Influence of Glucose-Insulin Dynamics on the Estrous Cycle in Dairy Cows
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ZIB-Report 19-22 |
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Mohamed Omari, Julia Plöntzke, Susanna Röblitz |
A pharmacokinetic-pharmacodynamic model for single dose administration of Dexamethasone in dairy cows
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ZIB-Report 19-53 |
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Annemarie Lang, Lisa Fischer, Marie-Christin Weber, Timo Gaber, Rainald Ehrig, Susanna Röblitz, Frank Buttgereit |
Combining in vitro simulation and in silico modelling towards a sophisticated human osteoarthritis model
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Osteoarthritis and Cartilage, Vol.27, p. S183, 2019 |
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Marie-Christin Weber, Lisa Fischer, Alexandra Damerau, Igor Ponomarev, Moritz Pfeiffenberger, Timo Gaber, Sebastian Götschel, Jens Lang, Susanna Röblitz, Frank Buttgereit, Rainald Ehrig, Annemarie Lang |
In vitro and in silico modeling of cellular and matrix-related changes during the early phase of osteoarthritis
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BioRxiv, 2019 |
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Franziska Erlekam, Sinaida Igde, Susanna Röblitz, Laura Hartmann, Marcus Weber |
Modeling of Multivalent Ligand-Receptor Binding Measured by kinITC
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Computation, 7(3), p. 46, 2019 |
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2018
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Julia Plöntzke, Mascha Berg, Susanna Röblitz |
A mathematical modelling approach to the insight of dynamic networks: Potassium homeostasis and glucose-insulin in dairy cows
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ADSA 2018 Annual Meeting, Vol.101 Suppl. 2, pp. 226-227, American Dairy Science Association, Journal of Dairy Science, 2018 |
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Toni Mancini, Federico Mari, Annalisa Massini, Igor Melatti, Ivano Salvo, Stefano Sinisi, Enrico Tronci, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners |
Computing Personalised Treatments through In Silico Clinical Trials. A Case Study on Downregulation in Assisted Reproduction
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Experimental Evaluation of Algorithms for Solving Problems with Combinatorial Explosion, Workshop of the Federated Logic Conference 2018 (FLoC 2018), Oxford, pp. 1-16, 2018 |
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Robert Schwieger, Heike Siebert, Susanna Röblitz |
Correspondence of Trap Spaces in Different Models of Bioregulatory Networks
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SIAM Journal on Applied Dynamical Systems, 17(2), pp. 1742-1765, 2018 (preprint available as ZIB-Report 18-10) |
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Alexander Lange, Robert Schwieger, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz |
Follicular competition in cows: the selection of dominant follicles as a synergistic effect
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Journal of Mathematical Biology, 2018 (preprint available as ZIB-Report 17-21) |
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Bernhard Reuter, Marcus Weber, Konstantin Fackeldey, Susanna Röblitz, Martin E. Garcia |
Generalized Markov State Modeling Method for Nonequilibrium Biomolecular Dynamics: Exemplified on Amyloid β Conformational Dynamics Driven by an Oscillating Electric Field
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Journal of Chemical Theory and Computation, 14(7), pp. 3579-3594, 2018 |
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Annemarie Lang, Andrea Volkamer, Laura Behm, Susanna Röblitz, Rainald Ehrig, Marlon Schneider, Lisbet Geris, Joerg Wichard, Frank Buttgereit |
In silico Methods - Computational Alternatives to Animal Testing
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ALTEX, 35(1), pp. 126-128, 2018 |
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2017
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Mascha Berg, Julia Plöntzke, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz |
A dynamic model to simulate potassium balance in dairy cows
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Journal of Dairy Science, 100(12), pp. 9799-9814, 2017 (preprint available as ZIB-Report 17-47) |
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Brigitte Leeners, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Lanja Saleh, K. Spanhaus, Cordula Schippert, Y. Zhang, M. P. Hengartner |
Lack of association between female hormone levels and visuospatial working memory, divided attention and cognitive bias across two consecutive menstrual cycles
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Front. Behav. Neurosci., 2017 |
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Sinaida Igde, Susanna Röblitz, Anne Müller, Katharina Kolbe, Sophia Boden, Claudia Fessele, Thisbe Lindhorst, Marcus Weber, Laura Hartmann |
Linear Precision Glycomacromolecules with Varying Interligand Spacing and Linker Functionalities Binding to Concanavalin A and the Bacterial Lectin FimH
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Marcomolecular Bioscience, 17(12), p. 1700198, 2017 |
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Michael Hengartner, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Rainald Ehrig, Lanja Saleh, Katharina Spanaus, Cordula Schippert, Yuanyuan Zhang, Brigitte Leeners |
Negative affect is unrelated to fluctuations in hormone levels across the menstrual cycle: evidence from a multisite observational study across two successive cycles
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Journal of Psychosomatic Research, Vol.99, pp. 21-27, 2017 |
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2016
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Rainald Ehrig, Thomas Dierkes, Stefan Schäfer, Susanna Röblitz, Enrico Tronci, Toni Mancini, Ivano Salvo, Vadim Alimguzhin, Federico Mari, Igor Melatti, Annalisa Massini, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille, Brigitte Leeners |
An integrative approach for model driven computation of treatments in reproductive medicine
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BIOMAT - Proceedings of the 15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2016 (preprint available as ZIB-Report 16-04) |
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Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz |
Empirical Bayes Methods for Prior Estimation in Systems Medicine
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ZIB-Report 16-57 |
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arXiv
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Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz |
Empirical Bayes Methods, Reference Priors, Cross Entropy and the EM Algorithm
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ZIB-Report 16-56 |
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Alexander Lange, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz |
Follicular maturation in cows: mathematical models and data
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10. European Conference on Mathematical and Theoretical Biology, 2016 |
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Stefan Schäfer, Julia Plöntzke, Susanna Röblitz |
Mathematical Modelling of Follicular Maturation in Cows and Women
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49. Jahrestagung der Physiologie und Pathologie der Fortpflanzung und gleichzeitig 41. Veterinär-Humanmedizinische Gemeinschaftstagung 2016, Leipzig., 2016 (epub ahead of print) |
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Mohamed Omari, Julia Plöntzke, Mascha Berg, Susanna Röblitz |
Modelling of glucose-insulin metabolism and its effect on the estrous cycle in bovine
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Annual Meeting of the Population Approach Group in Europe, 2016 |
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Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz |
Prior estimation and Bayesian inference from large cohort data sets
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ZIB-Report 16-09 |
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PDF
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2015
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Peter Deuflhard,
Susanna Röblitz
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A guide to numerical modelling in systems biology
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Springer, 2015, ISBN: 978-3-319-20058-3 |
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DOI
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Julia Plöntzke, Mascha Berg, Claudia Stötzel, Susanna Röblitz |
A systems biology approach to bovine fertility and metabolism: Introduction of a glucose insulin model
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15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2015 (preprint available as ZIB-Report 15-51) |
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Claudia Stötzel, Susanna Röblitz, Heike Siebert |
Complementing ODE-based System Analysis Using Boolean Networks Derived from an Euler-like Transformation
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PLOS ONE, 2015 (preprint available as ZIB-Report 15-46) |
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DOI
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Sinaida Igde, Hendrik Wölk, Susanna Röblitz, Marco Reidelbach, Marcus Weber, Laura Hartmann |
Identifying Multivalent Binding Kinetics of Precision Glycomacromolecules: A Kinetic Study Using kinITC
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Münster Symposium on Cooperative Effects 2015 - SFB 858, at Westfälische Wilhelms-Universität Münster, 2015, 2015 |
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Dany Pascal Moualeu-Ngangue, Susanna Röblitz, Rainald Ehrig, Peter Deuflhard |
Parameter Identification in a Tuberculosis Model for Cameroon
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PLOS ONE, 2015 (preprint available as ZIB-Report 13-72) |
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DOI
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Ivan Kryven, Susanna Röblitz, Christof Schütte |
Solution of the chemical master equation by radial basis functions approximation with interface tracking
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BMC Systems Biology, 9(67), pp. 1-12, 2015 |
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2014
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Claudia Stötzel, Mochamad Apri, Susanna Röblitz |
A reduced ODE model of the bovine estrous cycle
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ZIB-Report 14-33 |
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URN
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Alexander Bockmayr, Heike Siebert, Susanna Röblitz, Christof Schütte, Peter Deuflhard |
Advanced mathematical modeling in systems biology
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MATHEON-Mathematics for Key Technologies, Vol.1, pp. 29-44, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutela, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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Claudia Stötzel, Rainald Ehrig, H. Marike T. Boer, Julia Plöntzke, Susanna Röblitz |
Exploration of different wave patterns in a model of the bovine estrous cycle by Fourier analysis
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BIOMAT - Proceedings of the 14th International Symposium on Mathematical and Computational Biology, Bedlewo, Poland, 2014 (preprint available as ZIB-Report 16-02) |
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Jane Knöchel |
Mathematische Modellierung metabolischer Einflussfaktoren auf den Milchkuhzyklus
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Master's thesis, Humboldt-Universität zu Berlin, Susanna Röblitz, Caren Tischendorf (Advisors), 2014 |
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Pooja Gupta, Carola Krause, Paul Rikeit, Susanna Röblitz, Petra Knaus, Christof Schütte |
Modeling of the BMP mediated co-regulation of the Smad and Non-Smad pathways in the context of cell density
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10th International BMP conference, 2014, Berlin, Germany, 2014 |
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Toni Mancini, Ivano Salvo, Federico Mari, Igor Melatti, Annalisa Massini, Stefano Sinisi, Enrico Tronci, Francesco Davi, Thomas Dierkes, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille |
Patient-Specific Models from Inter-Patient Biological Models and Clinical Records
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Proceedings of the 14th Conference on Formal Methods in Computer-Aided Design (FMCAD 2014), pp. 207-214, 2014 |
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2013
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Susanna Röblitz, Claudia Stötzel, Peter Deuflhard, Hannah M. Jones, David-Olivier Azulay, Piet van der Graaf, Steven Martin |
A mathematical model of the human menstrual cycle for the administration of GnRH analogues
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Journal of Theoretical Biology, Vol.321, pp. 8-27, 2013 (preprint available as ZIB-Report 11-16) |
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DOI
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Fiete Haack, Konstantin Fackeldey, Susanna Röblitz, Olga Scharkoi, Marcus Weber, Burkhard Schmidt |
Adaptive spectral clustering with application to tripeptide conformation analysis
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The Journal of Chemical Physics, Vol.139, pp. 110-194, 2013 |
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DOI
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Susanna Röblitz, Marcus Weber |
Fuzzy spectral clustering by PCCA+: application to Markov state models and data classification
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Advances in Data Analysis and Classification, 7(2), pp. 147-179, 2013 |
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DOI
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Pooja Gupta, Susanna Röblitz, Carola Krause, Petra Knaus, Christof Schütte |
Mathematical modeling of the Smad and Non-Smad BMP signaling pathways in context of cell density
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Computational Models in biology and medicine, 2013, Dresden, Germany, 2013 |
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Kristin Meisel, Susanna Röblitz |
Mathematische Modellierung der Knochenremodellierung
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ZIB-Report 13-41 |
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URN
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Julia Plöntzke, Mascha Berg, Amiya Olany, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz |
Modeling potassium balance in dairy cows
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ZIB-Report 13-09 |
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URN
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Thomas Dierkes, Susanna Röblitz, Moritz Wade, Peter Deuflhard |
Parameter identification in large kinetic networks with BioPARKIN
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CoRR - Computing Research Repository - arXiv.org, Vol.abs/1303.4928, 2013 |
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2012
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H. Marike T. Boer, Claudia Stötzel, Susanna Röblitz, Henri Woelders |
A differential equation model to investigate the dynamics of the bovine estrous cycle
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Advances in Systems Biology, pp. 597-606, 2012 |
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DOI
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Claudia Stötzel, Julia Plöntzke, Wolfgang Heuwieser, Susanna Röblitz |
Advances in modelling of the bovine estrous cycle: Synchronization with PGF2alpha
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Theriogenology, Vol.78, pp. 1415-1428, 2012 (preprint available as ZIB-Report 11-17) |
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DOI
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Manon Bondouy, Susanna Röblitz |
Mathematical modeling of follicular development in bovine estrous cycles
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ZIB-Report 12-26 |
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2011
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Mascha Berg, Julia Ritter, Susanna Röblitz |
A mathematical model for the Zinc response of young pigs
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ZIB-Report 11-05 |
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URN
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H. Marike T. Boer, Claudia Stötzel, Susanna Röblitz, Peter Deuflhard, Roel F. Veerkamp, Henri Woelders |
A simple mathematical model of the bovine estrous cycle
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Journal of Theoretical Biology, 278(1), pp. 20-31, 2011 (preprint available as ZIB-Report 10-06) |
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DOI
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Thomas Dierkes, Moritz Wade, Ulrich Nowak, Susanna Röblitz |
BioPARKIN - Biology-related Parameter Identification in Large Kinetic Networks
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ZIB-Report 11-15 |
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H. Marike T. Boer, Susanna Röblitz, Claudia Stötzel, Roel F. Veerkamp, Bas Kemp, Henri Woelders |
Mechanisms regulating follicle wave patterns in the bovine estrous cycle investigated with a mathematical model
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Journal of Dairy Science, 94(12), pp. 5987-6000, 2011 |
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Konstantin Fackeldey, Susanna Röblitz, Olga Scharkoi, Marcus Weber |
Soft Versus Hard Metastable Conformations in Molecular Simulations
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ZIB-Report 11-27 |
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2010
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Fiete Haack, Susanna Röblitz, Olga Scharkoi, Burkhard Schmidt, Marcus Weber |
Adaptive Spectral Clustering for Conformation Analysis
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AIP Conference Proceedings, 1281(1), pp. 1585-1588, 2010 |
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Caroline Lasser, Susanna Röblitz |
Computing expectation values for molecular quantum dynamics
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SIAM Journal on Scientific Computing, 32(3), pp. 1465-1483, 2010 |
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Peter Deuflhard, Susanna Röblitz, Claudia Stötzel |
Mathematical Systems Biology at Zuse Institute Berlin (ZIB)
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BioTOPics - Journal of Biotechnology in Berlin-Brandenburg, Vol.39, 2010 |
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2009
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Caroline Lasser, Susanna Röblitz |
Computing expectation values for molecular quantum dynamics
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ZIB-Report 09-30 (Appeared in: SIAM J. Sci. Comput. 2010, 32(3), pp. 1465-1483) |
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DOI
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Susanna Röblitz, Marcus Weber |
Fuzzy Spectral Clustering by PCCA+
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Classification and Clustering: Models, Software and Applications, pp. 73-79, 2009 |
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Susanna Röblitz
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Statistical Error Estimation and Grid-free Hierarchical Refinement in Conformation Dynamics
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Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Wilhelm Huisinga (Advisors), 2009 |
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2008
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Susanna Kube, Marcus Weber |
Computation of equilibrium densities in metastable dynamical systems by domain decomposition
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Numerical Analysis and Applied Mathematics, International Conference on Numerical Analysis and Applied Mathematics 2008, pp. 339-342, Vol.1048, 2008 |
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Susanna Kube, Caroline Lasser, Marcus Weber |
Monte Carlo sampling of Wigner functions and surface hopping quantum dynamics
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Journal of Computational Physics, 228(6), pp. 1947-1962, 2008 (preprint available as ZIB-Report 07-17) |
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Susanna Kube, Marcus Weber |
Preserving the Markov Property of Reduced Reversible Markov Chains
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Numerical Analysis and Applied Mathematics, International Conference on Numerical Analysis and Applied Mathematics 2008, pp. 593-596, Vol.1048, 2008 |
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2007
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Susanna Kube, Marcus Weber |
A Coarse Graining Method for the Identification of Transition rates between Molecular Conformations
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Journal of Chemical Physics, 126(2), 2007 |
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Marcus Weber, Susanna Kube, Lionel Walter, Peter Deuflhard |
Stable Computation of Probability Densities of Metastable Dynamical Systems
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SIAM J. Multiscale Model. Simul., 6(2), pp. 396-416, 2007 |
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2006
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Susanna Kube, Marcus Weber |
Coarse Grained Molecular Kinetics
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ZIB-Report 06-35 (Appeared as : "A coarse grained method for the identification of transition rates between molecular conformations" in Journal of Chemical Physics, 126(2) 2007) |
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Marcus Weber, Susanna Kube, Alexander Riemer, Alexander Bujotzek |
Efficient Sampling of the Stationary Distribution of Metastable Dynamical Systems
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ZIB-Report 07-03 |
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Marcus Weber, Lionel Walter, Susanna Kube, Peter Deuflhard |
Stable computation of probability densities for metastable dynamical systems
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ZIB-Report 06-39 (Appeared in: SIAM J. Multisc. Mod. Sim. 2007, 6(2), pp. 396-416) |
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2005
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Susanna Kube, Marcus Weber |
Conformation Kinetics as a Reduced Model for Transition Pathways
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ZIB-Report 05-43 |
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Susanna Kube, Marcus Weber |
Identification of Metastabilities in Monomolecular Conformation Kinetics
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ZIB-Report 06-01 |
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Marcus Weber, Susanna Kube |
Robust Perron Cluster Analysis for Various Applications in Computational Life Science
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Computational Life Sciences, pp. 57-66, 2005 |
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