2022
Sophie Fischer-Holzhausen, Susanna Röblitz	Hormonal regulation of ovarian follicle growth in humans: Model-based exploration of cycle variability and parameter sensitivities	Journal of Theoretical Biology, 2022	BibTeX DOI
Sophie Fischer-Holzhausen, Susanna Röblitz	Mathematical modelling of follicular growth and ovarian stimulation	Current Opinion in Endocrine and Metabolic Research, 2022	BibTeX DOI
Julia Plöntzke, Mascha Berg, Rainald Ehrig, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz	Model Based Exploration of Hypokalemia in Dairy Cows	Scientific Reports, Vol.12, 19781, 2022	BibTeX DOI
Anna-Simone Frank, Alexander Sikorski, Susanna Röblitz	Spectral clustering of Markov chain transition matrices with complex eigenvalues	Journal of Computational and Applied Mathematics, 2022 (under review)	BibTeX arXiv
Tillmann Krüger, Brigitte Leeners, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Harald Engler, Susanna Röblitz, Helge Frieling, Christopher Sinke, Kirsten Jahn	The androgen system across the menstrual cycle: Hormonal, (epi-)genetic and psychometric alterations	Physiology and Behavior, 2022	BibTeX DOI
2021
Mascha Berg, Julia Plöntzke, Heike Siebert, Susanna Röblitz	Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations	Bulletin of Mathematical Biology, 83(121), pp. 1-25, 2021	BibTeX DOI
Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz	Objective priors in the empirical Bayes framework	Scandinavian Journal of Statistics, 48(4), pp. 1212-1233, 2021	BibTeX DOI
2020
Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz	Model-based exploration of the impact of glucose metabolism on the estrous cycle dynamics in dairy cows	Biology Direct, Vol.15, 2020	BibTeX DOI
2019
Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz	A Mathematical Model for the Influence of Glucose-Insulin Dynamics on the Estrous Cycle in Dairy Cows	ZIB-Report 19-22	PDF BibTeX URN
Mohamed Omari, Julia Plöntzke, Susanna Röblitz	A pharmacokinetic-pharmacodynamic model for single dose administration of Dexamethasone in dairy cows	ZIB-Report 19-53	PDF BibTeX URN
Annemarie Lang, Lisa Fischer, Marie-Christin Weber, Timo Gaber, Rainald Ehrig, Susanna Röblitz, Frank Buttgereit	Combining in vitro simulation and in silico modelling towards a sophisticated human osteoarthritis model	Osteoarthritis and Cartilage, Vol.27, p. S183, 2019	BibTeX DOI
Marie-Christin Weber, Lisa Fischer, Alexandra Damerau, Igor Ponomarev, Moritz Pfeiffenberger, Timo Gaber, Sebastian Götschel, Jens Lang, Susanna Röblitz, Frank Buttgereit, Rainald Ehrig, Annemarie Lang	In vitro and in silico modeling of cellular and matrix-related changes during the early phase of osteoarthritis	BioRxiv, 2019	BibTeX DOI
Franziska Erlekam, Sinaida Igde, Susanna Röblitz, Laura Hartmann, Marcus Weber	Modeling of Multivalent Ligand-Receptor Binding Measured by kinITC	Computation, 7(3), p. 46, 2019	BibTeX DOI
2018
Julia Plöntzke, Mascha Berg, Susanna Röblitz	A mathematical modelling approach to the insight of dynamic networks: Potassium homeostasis and glucose-insulin in dairy cows	ADSA 2018 Annual Meeting, Vol.101 Suppl. 2, pp. 226-227, American Dairy Science Association, Journal of Dairy Science, 2018	BibTeX
Toni Mancini, Federico Mari, Annalisa Massini, Igor Melatti, Ivano Salvo, Stefano Sinisi, Enrico Tronci, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners	Computing Personalised Treatments through In Silico Clinical Trials. A Case Study on Downregulation in Assisted Reproduction	Experimental Evaluation of Algorithms for Solving Problems with Combinatorial Explosion, Workshop of the Federated Logic Conference 2018 (FLoC 2018), Oxford, pp. 1-16, 2018	BibTeX DOI
Robert Schwieger, Heike Siebert, Susanna Röblitz	Correspondence of Trap Spaces in Different Models of Bioregulatory Networks	SIAM Journal on Applied Dynamical Systems, 17(2), pp. 1742-1765, 2018 (preprint available as ZIB-Report 18-10)	PDF (ZIB-Report) BibTeX DOI
Alexander Lange, Robert Schwieger, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz	Follicular competition in cows: the selection of dominant follicles as a synergistic effect	Journal of Mathematical Biology, 2018 (preprint available as ZIB-Report 17-21)	PDF (ZIB-Report) BibTeX DOI
Bernhard Reuter, Marcus Weber, Konstantin Fackeldey, Susanna Röblitz, Martin E. Garcia	Generalized Markov State Modeling Method for Nonequilibrium Biomolecular Dynamics: Exemplified on Amyloid β Conformational Dynamics Driven by an Oscillating Electric Field	Journal of Chemical Theory and Computation, 14(7), pp. 3579-3594, 2018	BibTeX DOI
Annemarie Lang, Andrea Volkamer, Laura Behm, Susanna Röblitz, Rainald Ehrig, Marlon Schneider, Lisbet Geris, Joerg Wichard, Frank Buttgereit	In silico Methods - Computational Alternatives to Animal Testing	ALTEX, 35(1), pp. 126-128, 2018	BibTeX DOI
2017
Mascha Berg, Julia Plöntzke, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz	A dynamic model to simulate potassium balance in dairy cows	Journal of Dairy Science, 100(12), pp. 9799-9814, 2017 (preprint available as ZIB-Report 17-47)	PDF (ZIB-Report) BibTeX DOI
Brigitte Leeners, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Lanja Saleh, K. Spanhaus, Cordula Schippert, Y. Zhang, M. P. Hengartner	Lack of association between female hormone levels and visuospatial working memory, divided attention and cognitive bias across two consecutive menstrual cycles	Front. Behav. Neurosci., 2017	BibTeX DOI
Sinaida Igde, Susanna Röblitz, Anne Müller, Katharina Kolbe, Sophia Boden, Claudia Fessele, Thisbe Lindhorst, Marcus Weber, Laura Hartmann	Linear Precision Glycomacromolecules with Varying Interligand Spacing and Linker Functionalities Binding to Concanavalin A and the Bacterial Lectin FimH	Marcomolecular Bioscience, 17(12), p. 1700198, 2017	BibTeX DOI
Michael Hengartner, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Rainald Ehrig, Lanja Saleh, Katharina Spanaus, Cordula Schippert, Yuanyuan Zhang, Brigitte Leeners	Negative affect is unrelated to fluctuations in hormone levels across the menstrual cycle: evidence from a multisite observational study across two successive cycles	Journal of Psychosomatic Research, Vol.99, pp. 21-27, 2017	BibTeX DOI
2016
Rainald Ehrig, Thomas Dierkes, Stefan Schäfer, Susanna Röblitz, Enrico Tronci, Toni Mancini, Ivano Salvo, Vadim Alimguzhin, Federico Mari, Igor Melatti, Annalisa Massini, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille, Brigitte Leeners	An integrative approach for model driven computation of treatments in reproductive medicine	BIOMAT - Proceedings of the 15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2016 (preprint available as ZIB-Report 16-04)	PDF (ZIB-Report) BibTeX
Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz	Empirical Bayes Methods for Prior Estimation in Systems Medicine	ZIB-Report 16-57	PDF BibTeX URN arXiv
Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz	Empirical Bayes Methods, Reference Priors, Cross Entropy and the EM Algorithm	ZIB-Report 16-56	PDF BibTeX URN
Alexander Lange, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz	Follicular maturation in cows: mathematical models and data	10. European Conference on Mathematical and Theoretical Biology, 2016	BibTeX
Stefan Schäfer, Julia Plöntzke, Susanna Röblitz	Mathematical Modelling of Follicular Maturation in Cows and Women	49. Jahrestagung der Physiologie und Pathologie der Fortpflanzung und gleichzeitig 41. Veterinär-Humanmedizinische Gemeinschaftstagung 2016, Leipzig., 2016 (epub ahead of print)	BibTeX
Mohamed Omari, Julia Plöntzke, Mascha Berg, Susanna Röblitz	Modelling of glucose-insulin metabolism and its effect on the estrous cycle in bovine	Annual Meeting of the Population Approach Group in Europe, 2016	BibTeX
Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz	Prior estimation and Bayesian inference from large cohort data sets	ZIB-Report 16-09	PDF PDF BibTeX URN
2015
Peter Deuflhard, Susanna Röblitz	A guide to numerical modelling in systems biology	Springer, 2015, ISBN: 978-3-319-20058-3	BibTeX DOI
Julia Plöntzke, Mascha Berg, Claudia Stötzel, Susanna Röblitz	A systems biology approach to bovine fertility and metabolism: Introduction of a glucose insulin model	15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2015 (preprint available as ZIB-Report 15-51)	PDF (ZIB-Report) BibTeX
Claudia Stötzel, Susanna Röblitz, Heike Siebert	Complementing ODE-based System Analysis Using Boolean Networks Derived from an Euler-like Transformation	PLOS ONE, 2015 (preprint available as ZIB-Report 15-46)	PDF (ZIB-Report) BibTeX DOI
Sinaida Igde, Hendrik Wölk, Susanna Röblitz, Marco Reidelbach, Marcus Weber, Laura Hartmann	Identifying Multivalent Binding Kinetics of Precision Glycomacromolecules: A Kinetic Study Using kinITC	Münster Symposium on Cooperative Effects 2015 - SFB 858, at Westfälische Wilhelms-Universität Münster, 2015, 2015	BibTeX
Dany Pascal Moualeu-Ngangue, Susanna Röblitz, Rainald Ehrig, Peter Deuflhard	Parameter Identification in a Tuberculosis Model for Cameroon	PLOS ONE, 2015 (preprint available as ZIB-Report 13-72)	PDF (ZIB-Report) BibTeX DOI
Ivan Kryven, Susanna Röblitz, Christof Schütte	Solution of the chemical master equation by radial basis functions approximation with interface tracking	BMC Systems Biology, 9(67), pp. 1-12, 2015	PDF BibTeX DOI
2014
Claudia Stötzel, Mochamad Apri, Susanna Röblitz	A reduced ODE model of the bovine estrous cycle	ZIB-Report 14-33	PDF BibTeX URN
Alexander Bockmayr, Heike Siebert, Susanna Röblitz, Christof Schütte, Peter Deuflhard	Advanced mathematical modeling in systems biology	MATHEON-Mathematics for Key Technologies, Vol.1, pp. 29-44, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutela, Jürgen Sprekels (Eds.), European Mathematical Society, 2014	BibTeX
Claudia Stötzel, Rainald Ehrig, H. Marike T. Boer, Julia Plöntzke, Susanna Röblitz	Exploration of different wave patterns in a model of the bovine estrous cycle by Fourier analysis	BIOMAT - Proceedings of the 14th International Symposium on Mathematical and Computational Biology, Bedlewo, Poland, 2014 (preprint available as ZIB-Report 16-02)	PDF (ZIB-Report) BibTeX
Jane Knöchel	Mathematische Modellierung metabolischer Einflussfaktoren auf den Milchkuhzyklus	Master's thesis, Humboldt-Universität zu Berlin, Susanna Röblitz, Caren Tischendorf (Advisors), 2014	PDF BibTeX URN
Pooja Gupta, Carola Krause, Paul Rikeit, Susanna Röblitz, Petra Knaus, Christof Schütte	Modeling of the BMP mediated co-regulation of the Smad and Non-Smad pathways in the context of cell density	10th International BMP conference, 2014, Berlin, Germany, 2014	BibTeX
Toni Mancini, Ivano Salvo, Federico Mari, Igor Melatti, Annalisa Massini, Stefano Sinisi, Enrico Tronci, Francesco Davi, Thomas Dierkes, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille	Patient-Specific Models from Inter-Patient Biological Models and Clinical Records	Proceedings of the 14th Conference on Formal Methods in Computer-Aided Design (FMCAD 2014), pp. 207-214, 2014	BibTeX
2013
Susanna Röblitz, Claudia Stötzel, Peter Deuflhard, Hannah M. Jones, David-Olivier Azulay, Piet van der Graaf, Steven Martin	A mathematical model of the human menstrual cycle for the administration of GnRH analogues	Journal of Theoretical Biology, Vol.321, pp. 8-27, 2013 (preprint available as ZIB-Report 11-16)	PDF (ZIB-Report) BibTeX DOI
Fiete Haack, Konstantin Fackeldey, Susanna Röblitz, Olga Scharkoi, Marcus Weber, Burkhard Schmidt	Adaptive spectral clustering with application to tripeptide conformation analysis	The Journal of Chemical Physics, Vol.139, pp. 110-194, 2013	BibTeX DOI
Susanna Röblitz, Marcus Weber	Fuzzy spectral clustering by PCCA+: application to Markov state models and data classification	Advances in Data Analysis and Classification, 7(2), pp. 147-179, 2013	BibTeX DOI
Pooja Gupta, Susanna Röblitz, Carola Krause, Petra Knaus, Christof Schütte	Mathematical modeling of the Smad and Non-Smad BMP signaling pathways in context of cell density	Computational Models in biology and medicine, 2013, Dresden, Germany, 2013	BibTeX
Kristin Meisel, Susanna Röblitz	Mathematische Modellierung der Knochenremodellierung	ZIB-Report 13-41	PDF BibTeX URN
Julia Plöntzke, Mascha Berg, Amiya Olany, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz	Modeling potassium balance in dairy cows	ZIB-Report 13-09	PDF BibTeX URN
Thomas Dierkes, Susanna Röblitz, Moritz Wade, Peter Deuflhard	Parameter identification in large kinetic networks with BioPARKIN	CoRR - Computing Research Repository - arXiv.org, Vol.abs/1303.4928, 2013	PDF BibTeX
2012
H. Marike T. Boer, Claudia Stötzel, Susanna Röblitz, Henri Woelders	A differential equation model to investigate the dynamics of the bovine estrous cycle	Advances in Systems Biology, pp. 597-606, 2012	BibTeX DOI
Claudia Stötzel, Julia Plöntzke, Wolfgang Heuwieser, Susanna Röblitz	Advances in modelling of the bovine estrous cycle: Synchronization with PGF2alpha	Theriogenology, Vol.78, pp. 1415-1428, 2012 (preprint available as ZIB-Report 11-17)	PDF (ZIB-Report) BibTeX DOI
Manon Bondouy, Susanna Röblitz	Mathematical modeling of follicular development in bovine estrous cycles	ZIB-Report 12-26	PDF BibTeX URN
2011
Mascha Berg, Julia Ritter, Susanna Röblitz	A mathematical model for the Zinc response of young pigs	ZIB-Report 11-05	PDF BibTeX URN
H. Marike T. Boer, Claudia Stötzel, Susanna Röblitz, Peter Deuflhard, Roel F. Veerkamp, Henri Woelders	A simple mathematical model of the bovine estrous cycle	Journal of Theoretical Biology, 278(1), pp. 20-31, 2011 (preprint available as ZIB-Report 10-06)	PDF (ZIB-Report) BibTeX DOI
Thomas Dierkes, Moritz Wade, Ulrich Nowak, Susanna Röblitz	BioPARKIN - Biology-related Parameter Identification in Large Kinetic Networks	ZIB-Report 11-15	PDF BibTeX URN
H. Marike T. Boer, Susanna Röblitz, Claudia Stötzel, Roel F. Veerkamp, Bas Kemp, Henri Woelders	Mechanisms regulating follicle wave patterns in the bovine estrous cycle investigated with a mathematical model	Journal of Dairy Science, 94(12), pp. 5987-6000, 2011	BibTeX DOI
Konstantin Fackeldey, Susanna Röblitz, Olga Scharkoi, Marcus Weber	Soft Versus Hard Metastable Conformations in Molecular Simulations	ZIB-Report 11-27	PDF BibTeX URN
2010
Fiete Haack, Susanna Röblitz, Olga Scharkoi, Burkhard Schmidt, Marcus Weber	Adaptive Spectral Clustering for Conformation Analysis	AIP Conference Proceedings, 1281(1), pp. 1585-1588, 2010	BibTeX DOI
Caroline Lasser, Susanna Röblitz	Computing expectation values for molecular quantum dynamics	SIAM Journal on Scientific Computing, 32(3), pp. 1465-1483, 2010	BibTeX DOI
Peter Deuflhard, Susanna Röblitz, Claudia Stötzel	Mathematical Systems Biology at Zuse Institute Berlin (ZIB)	BioTOPics - Journal of Biotechnology in Berlin-Brandenburg, Vol.39, 2010	BibTeX
2009
Caroline Lasser, Susanna Röblitz	Computing expectation values for molecular quantum dynamics	ZIB-Report 09-30 (Appeared in: SIAM J. Sci. Comput. 2010, 32(3), pp. 1465-1483)	PDF BibTeX URN DOI
Susanna Röblitz, Marcus Weber	Fuzzy Spectral Clustering by PCCA+	Classification and Clustering: Models, Software and Applications, pp. 73-79, 2009	BibTeX
Susanna Röblitz	Statistical Error Estimation and Grid-free Hierarchical Refinement in Conformation Dynamics	Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Wilhelm Huisinga (Advisors), 2009	PDF BibTeX URN
2008
Susanna Kube, Marcus Weber	Computation of equilibrium densities in metastable dynamical systems by domain decomposition	Numerical Analysis and Applied Mathematics, International Conference on Numerical Analysis and Applied Mathematics 2008, pp. 339-342, Vol.1048, 2008	BibTeX
Susanna Kube, Caroline Lasser, Marcus Weber	Monte Carlo sampling of Wigner functions and surface hopping quantum dynamics	Journal of Computational Physics, 228(6), pp. 1947-1962, 2008 (preprint available as ZIB-Report 07-17)	PDF (ZIB-Report) BibTeX DOI
Susanna Kube, Marcus Weber	Preserving the Markov Property of Reduced Reversible Markov Chains	Numerical Analysis and Applied Mathematics, International Conference on Numerical Analysis and Applied Mathematics 2008, pp. 593-596, Vol.1048, 2008	BibTeX
2007
Susanna Kube, Marcus Weber	A Coarse Graining Method for the Identification of Transition rates between Molecular Conformations	Journal of Chemical Physics, 126(2), 2007	BibTeX DOI
Marcus Weber, Susanna Kube, Lionel Walter, Peter Deuflhard	Stable Computation of Probability Densities of Metastable Dynamical Systems	SIAM J. Multiscale Model. Simul., 6(2), pp. 396-416, 2007	BibTeX
2006
Susanna Kube, Marcus Weber	Coarse Grained Molecular Kinetics	ZIB-Report 06-35 (Appeared as : "A coarse grained method for the identification of transition rates between molecular conformations" in Journal of Chemical Physics, 126(2) 2007)	PDF BibTeX URN
Marcus Weber, Susanna Kube, Alexander Riemer, Alexander Bujotzek	Efficient Sampling of the Stationary Distribution of Metastable Dynamical Systems	ZIB-Report 07-03	PDF BibTeX URN
Marcus Weber, Lionel Walter, Susanna Kube, Peter Deuflhard	Stable computation of probability densities for metastable dynamical systems	ZIB-Report 06-39 (Appeared in: SIAM J. Multisc. Mod. Sim. 2007, 6(2), pp. 396-416)	PDF BibTeX URN
2005
Susanna Kube, Marcus Weber	Conformation Kinetics as a Reduced Model for Transition Pathways	ZIB-Report 05-43	PDF BibTeX URN
Susanna Kube, Marcus Weber	Identification of Metastabilities in Monomolecular Conformation Kinetics	ZIB-Report 06-01	PDF BibTeX URN
Marcus Weber, Susanna Kube	Robust Perron Cluster Analysis for Various Applications in Computational Life Science	Computational Life Sciences, pp. 57-66, 2005	BibTeX