The complexity of sustainably developing research software is still largely
underrated and the question how to guarantee visibility and fair attribution of these efforts in the
scholarly environment remains open. However, with the continuing shift towards data-centric
science, the software utilized to produce the scientific output itself should be regarded as
scientific output as well. In many cases it is indispensable in order to reproduce the research
results and should therefore be made openly available.

In the realm of data a shift towards reusable and openly shared data sets is already underway.
Over the last years there is a general understanding evolving that not only a publication
should get scientific credit but documented and available datasets as well. A paradigm shift of
that dimension for research software is just beginning. Work in this direction is for instance done
in the FORCE11 Software Citation Working Group. Their Software Citation Principle states
that “Software citations should facilitate giving scholarly credit and normative, legal attribution to
all contributors to the software, recognizing that a single style or mechanism of attribution may
not be applicable to all software.”

The project aims at lowering the organisational and technical barriers for making
research software available and foster the reuse of it. Software is generally relying on a stack of
additional software like operating systems and libraries to be functional. To just provide a link to
a specific piece of software may render it useless for future use as required dependencies are
lost over time. To be most comprehensive, additionally metadata should be gathered as early in
the development process as possible. Therefore we intend to harvest the accompanying
metadata directly from the developing process at the time of the build. Through GitLab there is a
lot of necessary metadata available, such as changelogs, dependencies and contributors. This
metadata can be mapped to an agreed-upon metadata schema and transferred to a deployment
infrastructure. To reach a high degree of reliability this process should be automated. At the
core of the project is the exemplary research software Ubiquity Generator (UG) developed at
Zuse Institute Berlin. The envisioned infrastructure is comprised of widely used open source
components. The workflows developed in the course of the project
should be easily adaptable to different institutions and research facilities.

Parallel search tree generated by UG

Publications

2024
The SCIP Optimization Suite 9.0 ZIB-Report 24-02-29 Suresh Bolusani, Mathieu Besançon, Ksenia Bestuzheva, Antonia Chmiela, João Dionísio, Tim Donkiewicz, Jasper van Doornmalen, Leon Eifler, Mohammed Ghannam, Ambros Gleixner, Christoph Graczyk, Katrin Halbig, Ivo Hedtke, Alexander Hoen, Christopher Hojny, Rolf van der Hulst, Dominik Kamp, Thorsten Koch, Kevin Kofler, Jurgen Lentz, Julian Manns, Gioni Mexi, Erik Mühmer, Marc E. Pfetsch, Franziska Schlösser, Felipe Serrano, Yuji Shinano, Mark Turner, Stefan Vigerske, Dieter Weninger, Liding Xu PDF
BibTeX
URN
HPO-NAVI
2023
A parallel branch-and-bound heuristic for the integrated long-haul and local vehicle routing problem on an adaptive transportation network ZIB-Report 23-02 Junko Hosoda, Stephen J. Maher, Yuji Shinano, Jonas Christoffer Villumsen PDF
BibTeX
URN
HPO-NAVI
An Exceptionally Difficult Binary Quadratic Optimization Problem with Symmetry: a Challenge for The Largest Unsolved QAP Instance Tai256c ZIB-Report 23-27 Koichi Fujii, Sunyoung Kim, Masakazu Kojima, Hans D. Mittelmann, Yuji Shinano PDF
BibTeX
URN
HPO-NAVI
Software Management Plan developed in HPO-Navi 2023 Tim Hasler, Wolfgang Peters-Kottig, Franziska Schlösser PDF
BibTeX
DOI
HPO-NAVI
2022
The Largest Unsolved QAP Instance Tai256c Can Be Converted into A 256-dimensional Simple BQOP with A Single Cardinality Constraint ZIB-Report 22-18 Koichi Fujii, Sunyoung Kim, Masakazu Kojima, Hans D. Mittelmann, Yuji Shinano PDF
BibTeX
URN
DOI
HPO-NAVI
大規模二次割当問題への挑戦 ZIB-Report 22-11 Koichi Fujii, Naoki Ito, Sunyoung Kim, Masakazu Kojima, Yuji Shinano, Kim-Chuan Toh PDF
BibTeX
URN
HPO-NAVI
2021
Massively parallel sharing lattice basis reduction ZIB-Report 21-38 (under review) Nariaki Tateiwa, Yuji Shinano, Masaya Yasuda, Shizuo Kaji, Keiichiro Yamamura, Katsuki Fujisawa PDF
BibTeX
URN
HPO-NAVI
Solving Challenging Large Scale QAPs ZIB-Report 21-02 Koichi Fujii, Naoki Ito, Sunyoung Kim, Masakazu Kojima, Yuji Shinano, Kim-Chuan Toh PDF
BibTeX
URN
DOI
HPO-NAVI
The SCIP Optimization Suite 8.0 ZIB-Report 21-41 Ksenia Bestuzheva, Mathieu Besançon, Wei-Kun Chen, Antonia Chmiela, Tim Donkiewicz, Jasper van Doornmalen, Leon Eifler, Oliver Gaul, Gerald Gamrath, Ambros Gleixner, Leona Gottwald, Christoph Graczyk, Katrin Halbig, Alexander Hoen, Christopher Hojny, Rolf van der Hulst, Thorsten Koch, Marco Lübbecke, Stephen J. Maher, Frederic Matter, Erik Mühmer, Benjamin Müller, Marc E. Pfetsch, Daniel Rehfeldt, Steffan Schlein, Franziska Schlösser, Felipe Serrano, Yuji Shinano, Boro Sofranac, Mark Turner, Stefan Vigerske, Fabian Wegscheider, Philipp Wellner, Dieter Weninger, Jakob Witzig PDF
BibTeX
URN
HPO-NAVI
UG - Ubiquity Generator Framework v1.0.0beta 2021 Yuji Shinano BibTeX
DOI
HPO-NAVI
2020
An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action [version 1; peer review: 1 approved, 1 approved with reservations] F1000Research, 2020 H. Anzt, F. Bach, S. Druskat, F. Löffler, A. Loewe, B. Y. Renard, G. Seemann, A. Struck, E. Achhammer, F. Appell, M. Bader, L. Brusch, C. Busse, G. Chourdakis, P. W. Dabrowski, P. Ebert, B. Flemisch, S. Friedl, B. Fritzsch, M. D. Funk, V. Gast, F. Goth, J.-N. Grad, Sibylle Hermann, F. Hohmann, S. Janosch, D. Kutra, J. Linxweiler, T. Muth, Wolfgang Peters-Kottig, F. Rack, F. H. C. Raters, S. Rave, G. Reina, M. Reißig, T. Ropinski, J. Schaarschmidt, H. Seibold, J. P. Thiele, B. Uekermann, S. Unger, R. Weeber BibTeX
DOI
HPO-NAVI
Conflict Analysis for MINLP ZIB-Report 20-20 Timo Berthold, Jakob Witzig PDF
BibTeX
URN
HPO-NAVI
Conflict-Free Learning for Mixed Integer Programming Integration of AI and OR Techniques in Constraint Programming. CPAIOR 2020, pp. 521-530, LNCS, 2020 (preprint available as ZIB-Report 19-59) Jakob Witzig, Timo Berthold PDF (ZIB-Report)
BibTeX
DOI
HPO-NAVI
UG - Ubiquity Generator Framework v0.9.1 2020 Yuji Shinano BibTeX
DOI
HPO-NAVI
2019
Different Preservation Levels: The Case of Scholarly Digital Editions Data Science Journal, 18(1(51)), 2019 Elias Oltmanns, Tim Hasler, Wolfgang Peters-Kottig, Heinz-Günter Kuper BibTeX
DOI
HPO-NAVI