2023
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Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann |
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
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Scientific Reports, 13(607), 2023 |
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Mustafa Chaukair, Christof Schütte, Vikram Sunkara |
On the Activation Space of ReLU Equipped Deep Neural Networks
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Procedia Computer Science, pp. 624-635, Vol.222, 2023 |
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2022
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Vikram Sunkara, Angus Lewis, Giang T. Nguyen, Malgorzata M. O'Reilly, Nigel Bean |
A discontinuous Galerkin method for approximating the stationary distribution of stochastic fluid-fluid processes
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Methodology and Computing in Applied Probability, 2022 |
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Kenrick Schulze, Felix Peppert, Christof Schütte, Vikram Sunkara |
Chimeric U-Net–Modifying the standard U-Net towards Explainability
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bioRxiv, 2022 (under review) |
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Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara |
On the Sufficient Condition for Solving the Gap-Filling Problem Using Deep Convolutional Neural Networks
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IEEE Transactions on Neural Networks and Learning Systems, 33(11), pp. 6194-6205, 2022 |
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Annemarie Lang, Antja Vester, M. Ferreira-Gomes, G.M. Guerra, Fredrich R. Heinrich, C.C. Götzke, Sebastian Kurmies, Vikram Sunkara, Pawel Durek, Joel D. Boerckel, Mir-Farzin Mashreghi |
PIPELINE FOR SINGLE CELL SEQUENCING OF HUMAN CHONDROCYTE PELLET CULTURES TO DELINEATE IL-1β MODULATED CHANGES IN CELL HETEROGENEITY
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Osteoarthritis and Cartilage, 30(Supplement 1), p. S90, 2022 |
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Margarita Kostré, Vikram Sunkara, Christof Schütte, Natasa Djurdjevac Conrad |
Understanding the Romanization Spreading on Historical Interregional Networks in Northern Tunisia
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Applied Network Science, Vol.7, 2022 (preprint available as ZIB-Report 22-10) |
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Noushin Hajarolasvadi, Vikram Sunkara, Sagar Khavnekar, Florian Beck, Robert Brandt, Daniel Baum |
Volumetric macromolecule identification in cryo-electron tomograms using capsule networks
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BMC Bioinformatics, 23(360), 2022 |
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2021
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Vikram Sunkara, Gitta A. Heinz, Frederik F. Heinrich, Pawel Durek, Ali Mobasheri, Mir-Farzin Mashreghi, Annemarie Lang |
Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint
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Osteoarthritis and Cartilage, 29(6), pp. 905-914, 2021 |
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Niklas Wulkow, Péter Koltai, Vikram Sunkara, Christof Schütte |
Data-driven modelling of nonlinear dynamics by barycentric coordinates and memory
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J. Stat. Phys., 2021 (under review) |
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arXiv
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Margarita Kostre, Vikram Sunkara, Natasa Djurdjevac Conrad |
Inference of historical influence networks
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International Conference on Complex Networks & Their Applications Proceedings, pp. 110-113, 2021 |
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Ralph Birk, N. Alexia Raharinirina, Konstantin Fackeldey, Tonio Sebastian Richter, Marcus Weber |
Inferring cultural and social processes based on patterns of statistical relationships between Synodal texts
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2021 (in progress) |
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Alexia N. Raharinirina, Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara |
Inferring gene regulatory networks from single-cell RNA-seq temporal snapshot data requires higher-order moments
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Patterns, 2(9), 2021 (preprint available as ZIB-Report 20-25) |
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Sourav Ray, Arne Thies, Vikram Sunkara, Hanna Wulkow, Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann |
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
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ZIB-Report 21-19 |
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2020
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Vikram Sunkara, Gitta A. Heinz, Frederik F. Heinrich, Pawel Durek, Ali Mobasheri, Mir-Farzin Mashreghi, Annemarie Lang |
Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint
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bioarxiv (Accepted in Osteoarthr. Cartil.), 2020 |
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Annemarie Lang, Sarah Helfmeier, Jonathan Stefanowski, Aditi Kuppe, Vikram Sunkara, Moritz Pfeiffenberger, Angelique Wolter, Alexandra Damerau, Shabnam Hemmati-Sadeghi, Jochen Ringe, Rainer Haag, Anja E. Hauser, Max Löhning, Carsten Perka, Georg N. Duda, Paula Hoff, Katharina Schmidt-Bleek, Timo Gaber, Frank Buttgereit |
HIF-stabilization prevents delayed fracture healing
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bioarxiv, 2020 (under review) |
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Sourav Ray, Vikram Sunkara, Christof Schütte, Marcus Weber |
How to calculate pH-dependent binding rates for receptor-ligand systems based on thermodynamic simulations with different binding motifs
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Molecular Simulation, 46(18), pp. 1443-1452, 2020 (preprint available as ZIB-Report 20-18) |
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Jan Möller, Ali Isbilir, Titiwat Sungkaworn, Brenda Osberg, Christos Karathanasis, Vikram Sunkara, Eugene O Grushevsky, Andreas Bock, Paolo Annibale, Mike Heilemann, Christof Schütte, Martin J. Lohse |
Single molecule mu-opioid receptor membrane-dynamics reveal agonist-specific dimer formation with super-resolved precision
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Nature Chemical Biology, Vol.16, pp. 946-954, 2020 |
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Daniel J. Laydon, Vikram Sunkara, Lies Boelen, Charles R. M. Bangham, Becca Asquith |
The relative contributions of infectious and mitotic spread to HTLV-1 persistence
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PLOS Computational Biology, 2020 |
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2019
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Vikram Sunkara
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Algebraic Expressions of Conditional Expectations in Gene Regulatory Networks
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Journal of Mathematical Biology, pp. 1779-1829, 2019 |
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Tobias Haase, Vikram Sunkara, Benjamin Kohl, Carola Meier, Patricia Bußmann, Jessica Becker, Michal Jagielski, Max von Kleist, Wolfgang Ertel |
Discerning the spatio-temporal disease patterns of surgically induced OA mouse models
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PLOS One, 14(4), 2019 |
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Vikram Sunkara
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On the Properties of the Reaction Counts Chemical Master Equation
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Entropy, 21(6), p. 607, 2019 |
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Julia Temp, Dominika Labuz, Roger Negrete, Vikram Sunkara, Halina Machelska |
Pain and knee damage in male and female mice in the medial meniscal transection-induced osteoarthritis
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Osteoarthritis and Cartilage, 2019 |
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Anika Rettig, Tobias Haase, Alexandr Pletnyov, Benjamin Kohl, Wolfgang Ertel, Max von Kleist, Vikram Sunkara |
SLCV – A Supervised Learning - Computer Vision combined strategy for automated muscle fibre detection in cross sectional images
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PeerJ, 2019 |
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