Projects
Projects as Head
Publications
2025
Chimeric U-Net – Modifying the standard U-Net towards Explainability
Artificial Intelligence, Vol.338, 2025
Kenrick Schulze, Felix Peppert, Christof Schütte, Vikram Sunkara
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Sunkara, Vikram, Dr.
DOI
Feature Engineering for the Prediction of Scoliosis in 5q‐Spinal Muscular Atrophy
Journal of Cachexia, Sarcopenia and Muscle, 16(1), p. e13599, 2025
Tu‐Lan Vu‐Han, Vikram Sunkara, Rodrigo Bermudez‐Schettino, Jakob Schwechten, Robin Runge, Carsten Perka, Tobias Winkler, Sebastian Pokutta, Claudia Weiß, Matthias Pumberger
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Sunkara, Vikram, Dr.
DOI
2024
An interpretable data-driven prediction model to anticipate scoliosis in spinal muscular atrophy in the era of (gene-) therapies
Scientific Reports, 14(11838), 2024
Tu-Lan Vu-Han, Rodrigo Bermudez Schettino, Claudia Weiß, Carsten Perka, Tobias Winkler, Vikram Sunkara, Matthias Pumberger
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DOI
Sunkara, Vikram, Dr.
DOI
Exploration of Particle Swarm Optimisation Algorithm with Divergent Parameters
Natural Computing, 2024 (under review)
Margarita Kostré, Natasa Djurdjevac Conrad, Christof Schütte, Vikram Sunkara
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Sunkara, Vikram, Dr.
Exploring transcription modalities from bimodal, single-cell RNA sequencing data
NAR Genomics and Bioinformatics, 6(4), 2024
Enikő Regényi, Mir-Farzin Mashreghi, Christof Schütte, Vikram Sunkara
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Sunkara, Vikram, Dr.
DOI
Multi-Input data ASsembly for joint Analysis (MIASA): A framework for the joint analysis of disjoint sets of variables
PLOS ONE, 19(5), 2024
Nomenjanahary Alexia Raharinirina, Vikram Sunkara, Max von Kleist, Konstantin Fackeldey, Marcus Weber
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DOI
Sunkara, Vikram, Dr.
DOI
2023
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
Scientific Reports, 13(607), 2023
Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann
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Sunkara, Vikram, Dr.
DOI
On the Activation Space of ReLU Equipped Deep Neural Networks
Procedia Computer Science, pp. 624-635, Vol.222, 2023
Mustafa Chaukair, Christof Schütte, Vikram Sunkara
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Sunkara, Vikram, Dr.
DOI
2022
A discontinuous Galerkin method for approximating the stationary distribution of stochastic fluid-fluid processes
Methodology and Computing in Applied Probability, 2022
Vikram Sunkara, Angus Lewis, Giang T. Nguyen, Malgorzata M. O'Reilly, Nigel Bean
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Sunkara, Vikram, Dr.
DOI
On the Sufficient Condition for Solving the Gap-Filling Problem Using Deep Convolutional Neural Networks
IEEE Transactions on Neural Networks and Learning Systems, 33(11), pp. 6194-6205, 2022
Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara
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Sunkara, Vikram, Dr.
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PIPELINE FOR SINGLE CELL SEQUENCING OF HUMAN CHONDROCYTE PELLET CULTURES TO DELINEATE IL-1β MODULATED CHANGES IN CELL HETEROGENEITY
Osteoarthritis and Cartilage, 30(Supplement 1), p. S90, 2022
Annemarie Lang, Antja Vester, M. Ferreira-Gomes, G.M. Guerra, Fredrich R. Heinrich, C.C. Götzke, Sebastian Kurmies, Vikram Sunkara, Pawel Durek, Joel D. Boerckel, Mir-Farzin Mashreghi
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Sunkara, Vikram, Dr.
DOI
Understanding the Romanization Spreading on Historical Interregional Networks in Northern Tunisia
Applied Network Science, Vol.7, 2022 (preprint available as ZIB-Report 22-10)
Margarita Kostré, Vikram Sunkara, Christof Schütte, Natasa Djurdjevac Conrad
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Sunkara, Vikram, Dr.
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Volumetric macromolecule identification in cryo-electron tomograms using capsule networks
BMC Bioinformatics, 23(360), 2022
Noushin Hajarolasvadi, Vikram Sunkara, Sagar Khavnekar, Florian Beck, Robert Brandt, Daniel Baum
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Sunkara, Vikram, Dr.
DOI
2021
Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint
Osteoarthritis and Cartilage, 29(6), pp. 905-914, 2021
Vikram Sunkara, Gitta A. Heinz, Frederik F. Heinrich, Pawel Durek, Ali Mobasheri, Mir-Farzin Mashreghi, Annemarie Lang
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Sunkara, Vikram, Dr.
DOI
Data-driven modelling of nonlinear dynamics by barycentric coordinates and memory
J. Stat. Phys., 2021 (under review)
Niklas Wulkow, Péter Koltai, Vikram Sunkara, Christof Schütte
BibTeX
arXiv
Sunkara, Vikram, Dr.
arXiv
Inference of historical influence networks
International Conference on Complex Networks & Their Applications Proceedings, pp. 110-113, 2021
Margarita Kostre, Vikram Sunkara, Natasa Djurdjevac Conrad
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Sunkara, Vikram, Dr.
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Inferring cultural and social processes based on patterns of statistical relationships between Synodal texts
2021 (in progress)
Ralph Birk, N. Alexia Raharinirina, Konstantin Fackeldey, Tonio Sebastian Richter, Marcus Weber
BibTeX
Sunkara, Vikram, Dr.
Inferring gene regulatory networks from single-cell RNA-seq temporal snapshot data requires higher-order moments
Patterns, 2(9), 2021 (preprint available as ZIB-Report 20-25)
Alexia N. Raharinirina, Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara
PDF (ZIB-Report)
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DOI
Sunkara, Vikram, Dr.
BibTeX
DOI
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
ZIB-Report 21-19
Sourav Ray, Arne Thies, Vikram Sunkara, Hanna Wulkow, Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann
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Sunkara, Vikram, Dr.
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URN
2020
Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint
bioarxiv (Accepted in Osteoarthr. Cartil.), 2020
Vikram Sunkara, Gitta A. Heinz, Frederik F. Heinrich, Pawel Durek, Ali Mobasheri, Mir-Farzin Mashreghi, Annemarie Lang
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DOI
Sunkara, Vikram, Dr.
DOI
HIF-stabilization prevents delayed fracture healing
bioarxiv, 2020 (under review)
Annemarie Lang, Sarah Helfmeier, Jonathan Stefanowski, Aditi Kuppe, Vikram Sunkara, Moritz Pfeiffenberger, Angelique Wolter, Alexandra Damerau, Shabnam Hemmati-Sadeghi, Jochen Ringe, Rainer Haag, Anja E. Hauser, Max Löhning, Carsten Perka, Georg Duda, Paula Hoff, Katharina Schmidt-Bleek, Timo Gaber, Frank Buttgereit
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Sunkara, Vikram, Dr.
DOI
How to calculate pH-dependent binding rates for receptor-ligand systems based on thermodynamic simulations with different binding motifs
Molecular Simulation, 46(18), pp. 1443-1452, 2020 (preprint available as ZIB-Report 20-18)
Sourav Ray, Vikram Sunkara, Christof Schütte, Marcus Weber
PDF (ZIB-Report)
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DOI
Sunkara, Vikram, Dr.
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Single molecule mu-opioid receptor membrane-dynamics reveal agonist-specific dimer formation with super-resolved precision
Nature Chemical Biology, Vol.16, pp. 946-954, 2020
Jan Möller, Ali Isbilir, Titiwat Sungkaworn, Brenda Osberg, Christos Karathanasis, Vikram Sunkara, Eugene O Grushevsky, Andreas Bock, Paolo Annibale, Mike Heilemann, Christof Schütte, Martin J. Lohse
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Sunkara, Vikram, Dr.
DOI
The relative contributions of infectious and mitotic spread to HTLV-1 persistence
PLOS Computational Biology, 2020
Daniel J. Laydon, Vikram Sunkara, Lies Boelen, Charles R. M. Bangham, Becca Asquith
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Sunkara, Vikram, Dr.
DOI
2019
Algebraic Expressions of Conditional Expectations in Gene Regulatory Networks
Journal of Mathematical Biology, pp. 1779-1829, 2019
Vikram Sunkara
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Sunkara, Vikram, Dr.
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Discerning the spatio-temporal disease patterns of surgically induced OA mouse models
PLOS One, 14(4), 2019
Tobias Haase, Vikram Sunkara, Benjamin Kohl, Carola Meier, Patricia Bußmann, Jessica Becker, Michal Jagielski, Max von Kleist, Wolfgang Ertel
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Sunkara, Vikram, Dr.
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On the Properties of the Reaction Counts Chemical Master Equation
Entropy, 21(6), p. 607, 2019
Vikram Sunkara
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Sunkara, Vikram, Dr.
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Pain and knee damage in male and female mice in the medial meniscal transection-induced osteoarthritis
Osteoarthritis and Cartilage, 2019
Julia Temp, Dominika Labuz, Roger Negrete, Vikram Sunkara, Halina Machelska
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Sunkara, Vikram, Dr.
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SLCV – A Supervised Learning - Computer Vision combined strategy for automated muscle fibre detection in cross sectional images
PeerJ, 2019
Anika Rettig, Tobias Haase, Alexandr Pletnyov, Benjamin Kohl, Wolfgang Ertel, Max von Kleist, Vikram Sunkara
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Sunkara, Vikram, Dr.
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URN
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