2023
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Alberto Montefusco, Christof Schütte, Stefanie Winkelmann |
A route to the hydrodynamic limit of a reaction-diffusion master equation using gradient structures
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SIAM Journal on Applied Mathematics, 83(2), pp. 837-861, 2023 |
BibTeX
arXiv
DOI
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Arthur Straube, Stefanie Winkelmann, Felix Höfling |
Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles
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The Journal of Physical Chemistry B, 127(13), pp. 2955-2967, 2023 (preprint available as ZIB-Report 22-21) |
PDF (ZIB-Report)
BibTeX
arXiv
DOI
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Mauricio del Razo, Stefanie Winkelmann, Rupert Klein, Felix Höfling |
Chemical diffusion master equation: formulations of reaction-diffusion processes on the molecular level
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Journal of Mathematical Physics, 64(1), 2023 |
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DOI
arXiv
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Marvin Lücke, Jobst Heitzig, Péter Koltai, Nora Molkethin, Stefanie Winkelmann |
Large population limits of Markov processes on random networks
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Stochastic Processes and their Applications, Vol.166, 2023 (epub ahead of print) |
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DOI
arXiv
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Marvin Lücke, Stefanie Winkelmann, Jobst Heitzig, Nora Molkenthin, Péter Koltai |
Learning Interpretable Collective Variables of the Noisy Voter Model
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2023 (under review) |
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DOI
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Ariane Ernst, Undine Falkenhagen, Stefanie Winkelmann |
Model reduction for Ca2+-induced vesicle fusion dynamics
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Proceedings in Applied Mathematics & Mechanics, 2023 (accepted for publication) |
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DOI
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Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann |
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
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Scientific Reports, 13(607), 2023 |
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DOI
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Alberto Montefusco, Luzie Helfmann, Toluwani Okunola, Stefanie Winkelmann, Christof Schütte |
Partial mean-field model for neurotransmission dynamics
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Mathematical Biosciences, 2023 (under review) |
BibTeX
arXiv
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Ariane Ernst, Nathalie Unger, Christof Schütte, Alexander Walter, Stefanie Winkelmann |
Rate-limiting recovery processes in neurotransmission under sustained stimulation
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Mathematical Biosciences, Vol.362, 2023 |
BibTeX
arXiv
DOI
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2022
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Mauricio del Razo, Daniela Frömberg, Arthur Straube, Christof Schütte, Felix Höfling, Stefanie Winkelmann |
A probabilistic framework for particle-based reaction–diffusion dynamics using classical Fock space representations
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Letters in Mathematical Physics, 112(49), 2022 |
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arXiv
DOI
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Maximilian Engel, Guillermo Olicón-Méndez, Nathalie Unger, Stefanie Winkelmann |
Synchronization and random attractors for reaction jump processes
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2022 (under review) |
BibTeX
arXiv
DOI
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Horst-Holger Boltz, Alexei Sirbu, Nina Stelzer, Primal de Lanerolle, Stefanie Winkelmann, Paolo Annibale |
The Impact of Membrane Protein Diffusion on GPCR Signaling
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Cells, 11(10), p. 1660, 2022 |
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DOI
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Ariane Ernst, Christof Schütte, Stephan Sigrist, Stefanie Winkelmann |
Variance of filtered signals: Characterization for linear reaction networks and application to neurotransmission dynamics
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Mathematical Biosciences, Vol.343, 2022 (preprint available as ZIB-Report 21-15) |
PDF (ZIB-Report)
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DOI
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2021
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Jan-Hendrik Niemann, Stefanie Winkelmann, Sarah Wolf, Christof Schütte |
Agent-based modeling: Population limits and large timescales
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Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021 |
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URN
DOI
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Luzie Helfmann, Natasa Djurdjevac Conrad, Ana Djurdjevac, Stefanie Winkelmann, Christof Schütte |
From interacting agents to density-based modeling with stochastic PDEs
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Communications in Applied Mathematics and Computational Science, 16(1), pp. 1-32, 2021 (preprint available as ZIB-Report 19-21) |
PDF (ZIB-Report)
BibTeX
arXiv
DOI
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Stefanie Winkelmann, Johannes Zonker, Christof Schütte, Natasa Djurdjevac Conrad |
Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading
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Mathematical Biosciences, Vol.336, 2021 |
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DOI
arXiv
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Sourav Ray, Arne Thies, Vikram Sunkara, Hanna Wulkow, Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann |
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
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ZIB-Report 21-19 |
PDF
BibTeX
URN
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Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling |
Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles
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J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021 |
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DOI
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2020
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Stefanie Winkelmann,
Christof Schütte
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Stochastic Dynamics in Computational Biology
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Springer International Publishing, 2020, ISBN: 978-3-030-62386-9 |
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DOI
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2018
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Natasa Djurdjevac Conrad, Luzie Helfmann, Johannes Zonker, Stefanie Winkelmann, Christof Schütte |
Human mobility and innovation spreading in ancient times: a stochastic agent-based simulation approach
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EPJ Data Science, 7(1), 2018 |
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DOI
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2017
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Stefanie Winkelmann, Christof Schütte |
Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems
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The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ZIB-Report 17-29) |
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PDF (ZIB-Report)
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DOI
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Stefanie Winkelmann
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Markov Control with Rare State Observation: Average Optimality
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Markov Processes and Related Fields, Vol.23, pp. 1-34, 2017 (preprint available as ZIB-Report 16-59) |
PDF (ZIB-Report)
BibTeX
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2016
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Stefanie Winkelmann, Christof Schütte |
The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling
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Journal of Chemical Physics, 145(21), 2016 (preprint available as ZIB-Report 16-60) |
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PDF (ZIB-Report)
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DOI
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2015
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Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist |
Optimal Treatment Strategies in the Context of 'Treatment for Prevention' against HIV/1 in Resource-Poor Settings
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PloS Computational Biology, 11(4), 2015 |
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DOI
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2014
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Stefanie Winkelmann, Christof Schütte, Max von Kleist |
Markov Control Processes with Rare State Observation: Theory and Application to Treatment Scheduling in HIV-1
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Communications in Mathematical Sciences, 12(5), pp. 859-877, 2014 (preprint available as ZIB-Report 13-34) |
PDF (ZIB-Report)
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DOI
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2013
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Stefanie Winkelmann, Christof Schütte, Max von Kleist |
Markov Control Processes with Rare State Observation: Sensitivity Analysis with Respect to Optimal Treatment Strategies against HIV-1
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International Journal of Biomathematics and Biostatistics, 2(1), 2013 |
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Stefanie Winkelmann
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Markov Decision Processes with Information Costs
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Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013 |
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2012
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Christof Schütte, Stefanie Winkelmann, Carsten Hartmann |
Optimal control of molecular dynamics using Markov state models
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Math. Program. (Series B), 134(1), pp. 259-282, 2012 |
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