Contact
Position
Head of Research Group
Room
4104
Phone
+49 30 84185-156
Email
Website
Projects
Projects as Head
Publications
2025
Approximating particle-based clustering dynamics by stochastic PDEs
SIAM Journal on Applied Dynamical Systems, 24(2), pp. 1231-1250, 2025
Nathalie Wehlitz, Mohsen Sadeghi, Alberto Montefusco, Christof Schütte, Grigorios A. Pavliotis, Stefanie Winkelmann
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
arXiv
DOI
Independently engaging protein tethers of different length enhance synaptic vesicle trafficking to the plasma membrane
The Journal of Physiology, 2025
Manon Berns, Mirza Yildiz, Stefanie Winkelmann, Alexander Walter
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
Multi-grid reaction-diffusion master equation: applications to morphogen gradient modelling
Bulletin of Mathematical Biology, 87(1), 2025
Radek Erban, Stefanie Winkelmann
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
arXiv
DOI
2024
Learning interpretable collective variables for spreading processes on networks
Physical Review E, 109(2), p. L022301, 2024
Marvin Lücke, Stefanie Winkelmann, Jobst Heitzig, Nora Molkenthin, Péter Koltai
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
arXiv
DOI
Partial mean-field model for neurotransmission dynamics
Mathematical Biosciences, Vol.369, 2024
Alberto Montefusco, Luzie Helfmann, Toluwani Okunola, Stefanie Winkelmann, Christof Schütte
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
arXiv
DOI
Synchronization and random attractors in reaction jump processes
Journal of Dynamics and Differential Equations, 2024
Maximilian Engel, Guillermo Olicón-Méndez, Nathalie Wehlitz, Stefanie Winkelmann
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
arXiv
DOI
Understanding Memory Mechanisms in Socio-Technical Systems: the Case of an Agent-based Mobility Model
Advances in Complex Systems, Vol.27, 2024
Gesine Steudle, Stefanie Winkelmann, Steffen Fürst, Sarah Wolf
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
2023
A route to the hydrodynamic limit of a reaction-diffusion master equation using gradient structures
SIAM Journal on Applied Mathematics, 83(2), pp. 837-861, 2023
Alberto Montefusco, Christof Schütte, Stefanie Winkelmann
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
arXiv
DOI
Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles
The Journal of Physical Chemistry B, 127(13), pp. 2955-2967, 2023 (preprint available as ZIB-Report 22-21)
Arthur Straube, Stefanie Winkelmann, Felix Höfling
PDF (ZIB-Report)
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
BibTeX
arXiv
DOI
Chemical diffusion master equation: formulations of reaction-diffusion processes on the molecular level
Journal of Mathematical Physics, 64(1), 2023
Mauricio del Razo, Stefanie Winkelmann, Rupert Klein, Felix Höfling
BibTeX
DOI
arXiv
Winkelmann, Stefanie, Dr.
DOI
arXiv
Large population limits of Markov processes on random networks
Stochastic Processes and their Applications, Vol.166, 2023
Marvin Lücke, Jobst Heitzig, Péter Koltai, Nora Molkethin, Stefanie Winkelmann
BibTeX
DOI
arXiv
Winkelmann, Stefanie, Dr.
DOI
arXiv
Model reduction for calcium-induced vesicle fusion dynamics
Proceedings in Applied Mathematics & Mechanics, 23(4), 2023
Ariane Ernst, Undine Falkenhagen, Stefanie Winkelmann
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
Scientific Reports, 13(607), 2023
Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
Rate-limiting recovery processes in neurotransmission under sustained stimulation
Mathematical Biosciences, Vol.362, 2023
Ariane Ernst, Nathalie Unger, Christof Schütte, Alexander Walter, Stefanie Winkelmann
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
arXiv
DOI
2022
A probabilistic framework for particle-based reaction–diffusion dynamics using classical Fock space representations
Letters in Mathematical Physics, 112(49), 2022
Mauricio del Razo, Daniela Frömberg, Arthur Straube, Christof Schütte, Felix Höfling, Stefanie Winkelmann
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
arXiv
DOI
Discovering collective variable dynamics of agent-based models
25th International Symposium on Mathematical Theory of Networks and Systems MTNS 2022, 2022
Marvin Lücke, Peter Koltai, Stefanie Winkelmann, Nora Molkethin, Jobst Heitzig
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
The Impact of Membrane Protein Diffusion on GPCR Signaling
Cells, 11(10), p. 1660, 2022
Horst-Holger Boltz, Alexei Sirbu, Nina Stelzer, Primal de Lanerolle, Stefanie Winkelmann, Paolo Annibale
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
Variance of filtered signals: Characterization for linear reaction networks and application to neurotransmission dynamics
Mathematical Biosciences, Vol.343, 2022 (preprint available as ZIB-Report 21-15)
Ariane Ernst, Christof Schütte, Stephan Sigrist, Stefanie Winkelmann
PDF (ZIB-Report)
BibTeX
DOI
Winkelmann, Stefanie, Dr.
BibTeX
DOI
2021
Agent-based modeling: Population limits and large timescales
Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021
Jan-Hendrik Niemann, Stefanie Winkelmann, Sarah Wolf, Christof Schütte
PDF
BibTeX
URN
DOI
Winkelmann, Stefanie, Dr.
BibTeX
URN
DOI
From interacting agents to density-based modeling with stochastic PDEs
Communications in Applied Mathematics and Computational Science, 16(1), pp. 1-32, 2021 (preprint available as ZIB-Report 19-21)
Luzie Helfmann, Natasa Djurdjevac Conrad, Ana Djurdjevac, Stefanie Winkelmann, Christof Schütte
PDF (ZIB-Report)
BibTeX
arXiv
DOI
Winkelmann, Stefanie, Dr.
BibTeX
arXiv
DOI
Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading
Mathematical Biosciences, Vol.336, 2021
Stefanie Winkelmann, Johannes Zonker, Christof Schütte, Natasa Djurdjevac Conrad
BibTeX
DOI
arXiv
Winkelmann, Stefanie, Dr.
DOI
arXiv
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design
ZIB-Report 21-19
Sourav Ray, Arne Thies, Vikram Sunkara, Hanna Wulkow, Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann
PDF
BibTeX
URN
Winkelmann, Stefanie, Dr.
BibTeX
URN
Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles
J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021
Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
2020
Stochastic Dynamics in Computational Biology
Springer International Publishing, 2020, ISBN: 978-3-030-62386-9
Stefanie Winkelmann,
Christof Schütte
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
2018
Human mobility and innovation spreading in ancient times: a stochastic agent-based simulation approach
EPJ Data Science, 7(1), 2018
Natasa Djurdjevac Conrad, Luzie Helfmann, Johannes Zonker, Stefanie Winkelmann, Christof Schütte
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
2017
Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems
The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ZIB-Report 17-29)
Stefanie Winkelmann, Christof Schütte
PDF
PDF (ZIB-Report)
BibTeX
DOI
Winkelmann, Stefanie, Dr.
PDF (ZIB-Report)
BibTeX
DOI
Markov Control with Rare State Observation: Average Optimality
Markov Processes and Related Fields, Vol.23, pp. 1-34, 2017 (preprint available as ZIB-Report 16-59)
Stefanie Winkelmann
PDF (ZIB-Report)
BibTeX
Winkelmann, Stefanie, Dr.
BibTeX
2016
The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling
Journal of Chemical Physics, 145(21), 2016 (preprint available as ZIB-Report 16-60)
Stefanie Winkelmann, Christof Schütte
PDF
PDF (ZIB-Report)
BibTeX
DOI
Winkelmann, Stefanie, Dr.
PDF (ZIB-Report)
BibTeX
DOI
2015
Optimal Treatment Strategies in the Context of 'Treatment for Prevention' against HIV/1 in Resource-Poor Settings
PloS Computational Biology, 11(4), 2015
Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI
2014
Markov Control Processes with Rare State Observation: Theory and Application to Treatment Scheduling in HIV-1
Communications in Mathematical Sciences, 12(5), pp. 859-877, 2014 (preprint available as ZIB-Report 13-34)
Stefanie Winkelmann, Christof Schütte, Max von Kleist
PDF (ZIB-Report)
BibTeX
DOI
Winkelmann, Stefanie, Dr.
BibTeX
DOI
2013
Markov Control Processes with Rare State Observation: Sensitivity Analysis with Respect to Optimal Treatment Strategies against HIV-1
International Journal of Biomathematics and Biostatistics, 2(1), 2013
Stefanie Winkelmann, Christof Schütte, Max von Kleist
BibTeX
Winkelmann, Stefanie, Dr.
Markov Decision Processes with Information Costs
Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013
Stefanie Winkelmann
BibTeX
Winkelmann, Stefanie, Dr.
2012
Optimal control of molecular dynamics using Markov state models
Math. Program. (Series B), 134(1), pp. 259-282, 2012
Christof Schütte, Stefanie Winkelmann, Carsten Hartmann
BibTeX
DOI
Winkelmann, Stefanie, Dr.
DOI