Skip to main content
Home
  • Impressum und Datenschutz
  • English
  • Deutsch
Print
-A +A
  • Forschung
    • Solutions for Individualized Medicine
    • Molecular and Biological Processes
    • Materials and Optical Processes
    • Combinatorics and MINLP
    • MSO for Multiscale Systems
    • Robust Solutions under Uncertainty
    • Digital Humanities
    • Efficient Infrastructure and Logistics
    • Large-Scale Data Management, Curation & Analysis
    • Highly Parallel Computing
    • Scalable and Fault-Tolerant Algorithms
    • Publikationen
    • Bücher
    • Features
  • Institut
    • Research Campus MODAL
    • Intel oneAPI CoE
    • Joint Lab Optics
    • Oracle Center of Excellence
    • Organization
    • Organizational Chart
    • Weitere Ausschüsse und Verordnungen
    • Spin-Offs
    • Zuse Fellows
    • Konrad Zuse
    • Hall of Fame
  • Forschungsdienste
    • NHR Center at ZIB
    • Supercomputing
    • Data Archive
    • KOBV
    • BRAIN
    • Software
    • Room Reservation
    • Library
  • Mitglieder
  • Öffentlichkeit
    • Doktoranden
    • Stipendien
    • Lehrveranstaltungen
    • Ausbildungsplätze
    • Schulen
    • Presse
    • Öffentliche Veranstaltungen
    • Geführte Touren
    • Ehemalige
    • Abschlussarbeiten
  • Kontakt
Home  |  Members  |  Winkelmann, Dr. Stefanie

Winkelmann, Dr. Stefanie

Funktion: 
Leitung Arbeitsgruppe
Raum: 
4104
Bereich: 
Mathematics of Complex Systems
Abteilung: 
Modeling and Simulation of Complex Processes
Arbeitsgruppe: 
Computational Systems Biology
Mail: 
winkelmannzib.de
Telefon: 
+49 30 84185 - 156
Fax: 
+49 30 84185 - 107
Personal website: 
https://www.zib.de/winkelmann

Projekte

Leitung

The spatio-temporal modelling of mechanisms underlying pain relief via the µ-opioid receptor
Concentration Effects and Collective Variables in Agent-Based Systems
Math-Powered Drug Design
Synchronization and Geometric Structures of Stochastic Biochemical Oscillators
Multiscale Modelling and Simulation for Spatiotemporal Master Equations
Space-time stochastic models for neurotransmission processes

Mitglieder

Multiscale Modelling and Simulation for Spatiotemporal Master Equations

Publikationen

2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012

2023

Alberto Montefusco, Christof Schütte, Stefanie Winkelmann A route to the hydrodynamic limit of a reaction-diffusion master equation using gradient structures SIAM Journal on Applied Mathematics, 83(2), pp. 837-861, 2023 BibTeX
arXiv
DOI
Arthur Straube, Stefanie Winkelmann, Felix Höfling Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles The Journal of Physical Chemistry B, 127(13), pp. 2955-2967, 2023 (preprint available as ZIB-Report 22-21) PDF (ZIB-Report)
BibTeX
arXiv
DOI
Mauricio del Razo, Stefanie Winkelmann, Rupert Klein, Felix Höfling Chemical diffusion master equation: formulations of reaction-diffusion processes on the molecular level Journal of Mathematical Physics, 64(1), 2023 BibTeX
DOI
arXiv
Marvin Lücke, Jobst Heitzig, Péter Koltai, Nora Molkethin, Stefanie Winkelmann Large population limits of Markov processes on random networks Stochastic Processes and their Applications, 2023 (epub ahead of print) BibTeX
DOI
arXiv
Marvin Lücke, Stefanie Winkelmann, Jobst Heitzig, Nora Molkenthin, Péter Koltai Learning Interpretable Collective Variables of the Noisy Voter Model 2023 (under review) BibTeX
DOI
Ariane Ernst, Undine Falkenhagen, Stefanie Winkelmann Model reduction for Ca2+-induced vesicle fusion dynamics Proceedings in Applied Mathematics & Mechanics, 2023 (accepted for publication) BibTeX
DOI
Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design Scientific Reports, 13(607), 2023 BibTeX
DOI
Alberto Montefusco, Luzie Helfmann, Toluwani Okunola, Stefanie Winkelmann, Christof Schütte Partial mean-field model for neurotransmission dynamics 2023 (under review) BibTeX
arXiv
Ariane Ernst, Nathalie Unger, Christof Schütte, Alexander Walter, Stefanie Winkelmann Rate-limiting recovery processes in neurotransmission under sustained stimulation Mathematical Biosciences, Vol.362, 2023 BibTeX
arXiv
DOI

2022

Mauricio del Razo, Daniela Frömberg, Arthur Straube, Christof Schütte, Felix Höfling, Stefanie Winkelmann A probabilistic framework for particle-based reaction–diffusion dynamics using classical Fock space representations Letters in Mathematical Physics, 112(49), 2022 BibTeX
arXiv
DOI
Maximilian Engel, Guillermo Olicón-Méndez, Nathalie Unger, Stefanie Winkelmann Synchronization and random attractors for reaction jump processes 2022 (under review) BibTeX
arXiv
DOI
Horst-Holger Boltz, Alexei Sirbu, Nina Stelzer, Primal de Lanerolle, Stefanie Winkelmann, Paolo Annibale The Impact of Membrane Protein Diffusion on GPCR Signaling Cells, 11(10), p. 1660, 2022 BibTeX
DOI
Ariane Ernst, Christof Schütte, Stephan Sigrist, Stefanie Winkelmann Variance of filtered signals: Characterization for linear reaction networks and application to neurotransmission dynamics Mathematical Biosciences, Vol.343, 2022 (preprint available as ZIB-Report 21-15) PDF (ZIB-Report)
BibTeX
DOI

2021

Jan-Hendrik Niemann, Stefanie Winkelmann, Sarah Wolf, Christof Schütte Agent-based modeling: Population limits and large timescales Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021 PDF
BibTeX
URN
DOI
Luzie Helfmann, Natasa Djurdjevac Conrad, Ana Djurdjevac, Stefanie Winkelmann, Christof Schütte From interacting agents to density-based modeling with stochastic PDEs Communications in Applied Mathematics and Computational Science, 16(1), pp. 1-32, 2021 (preprint available as ZIB-Report 19-21) PDF (ZIB-Report)
BibTeX
arXiv
DOI
Stefanie Winkelmann, Johannes Zonker, Christof Schütte, Natasa Djurdjevac Conrad Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading Mathematical Biosciences, Vol.336, 2021 BibTeX
DOI
arXiv
Sourav Ray, Arne Thies, Vikram Sunkara, Hanna Wulkow, Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design ZIB-Report 21-19 PDF
BibTeX
URN
Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021 BibTeX
DOI

2020

Stefanie Winkelmann, Christof Schütte Stochastic Dynamics in Computational Biology Springer International Publishing, 2020, ISBN: 978-3-030-62386-9 BibTeX
DOI

2018

Natasa Djurdjevac Conrad, Luzie Helfmann, Johannes Zonker, Stefanie Winkelmann, Christof Schütte Human mobility and innovation spreading in ancient times: a stochastic agent-based simulation approach EPJ Data Science, 7(1), 2018 BibTeX
DOI

2017

Stefanie Winkelmann, Christof Schütte Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ZIB-Report 17-29) PDF
PDF (ZIB-Report)
BibTeX
DOI
Stefanie Winkelmann Markov Control with Rare State Observation: Average Optimality Markov Processes and Related Fields, Vol.23, pp. 1-34, 2017 (preprint available as ZIB-Report 16-59) PDF (ZIB-Report)
BibTeX

2016

Stefanie Winkelmann, Christof Schütte The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling Journal of Chemical Physics, 145(21), 2016 (preprint available as ZIB-Report 16-60) PDF
PDF (ZIB-Report)
BibTeX
DOI

2015

Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist Optimal Treatment Strategies in the Context of 'Treatment for Prevention' against HIV/1 in Resource-Poor Settings PloS Computational Biology, 11(4), 2015 BibTeX
DOI

2014

Stefanie Winkelmann, Christof Schütte, Max von Kleist Markov Control Processes with Rare State Observation: Theory and Application to Treatment Scheduling in HIV-1 Communications in Mathematical Sciences, 12(5), pp. 859-877, 2014 (preprint available as ZIB-Report 13-34) PDF (ZIB-Report)
BibTeX
DOI

2013

Stefanie Winkelmann, Christof Schütte, Max von Kleist Markov Control Processes with Rare State Observation: Sensitivity Analysis with Respect to Optimal Treatment Strategies against HIV-1 International Journal of Biomathematics and Biostatistics, 2(1), 2013 BibTeX
Stefanie Winkelmann Markov Decision Processes with Information Costs Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013 BibTeX

2012

Christof Schütte, Stefanie Winkelmann, Carsten Hartmann Optimal control of molecular dynamics using Markov state models Math. Program. (Series B), 134(1), pp. 259-282, 2012 BibTeX
DOI
  • Forschung
    • Solutions for Individualized Medicine
    • Molecular and Biological Processes
    • Materials and Optical Processes
    • Combinatorics and MINLP
    • MSO for Multiscale Systems
    • Robust Solutions under Uncertainty
    • Digital Humanities
    • Efficient Infrastructure and Logistics
    • Large-Scale Data Management, Curation & Analysis
    • Highly Parallel Computing
    • Scalable and Fault-Tolerant Algorithms
    • Publikationen
    • Bücher
    • Features
  • Institut
    • Research Campus MODAL
    • Intel oneAPI CoE
    • Joint Lab Optics
    • Oracle Center of Excellence
    • Organization
    • Organizational Chart
    • Weitere Ausschüsse und Verordnungen
    • Spin-Offs
    • Zuse Fellows
    • Konrad Zuse
    • Hall of Fame
  • Forschungsdienste
    • NHR Center at ZIB
    • Supercomputing
    • Data Archive
    • KOBV
    • BRAIN
    • Software
    • Room Reservation
    • Library
  • Mitglieder
  • Öffentlichkeit
    • Doktoranden
    • Stipendien
    • Lehrveranstaltungen
    • Ausbildungsplätze
    • Schulen
    • Presse
    • Öffentliche Veranstaltungen
    • Geführte Touren
    • Ehemalige
    • Abschlussarbeiten
  • Kontakt