Visual and Data-Centric Computing
Visualization plays an important role in understanding and in knowledge advancement on base of empirical data. In initial stages of research of such type, visualization helps to explore the data interactively, to get an overview and to create meaningful hypotheses; in later stages, it helps to control and to steer partially automated analyses; and in final stages, where fully automated data analysis procedures are available, it provides summaries of the results that foster our understanding. Visualization is also instrumental in design, being it e.g. the design of pharmaceutically active compounds, the design of objects, or the planning of clinical therapies.
The Visual and Data-centric Computing department develops tools for extracting relevant information from data sets such as time series, spatiotemporal data and high-dimensional data. The data may result from observations or simulations, they may cover single or multiple length and time scales, they may be crisp or unsharp and they may be complete or incomplete. We are interested in application-relevant structures hidden in the data; to reveal these, we develop methods for their identification, extraction, classification, quantification and visualization. Only in simple cases, the structures have a purely mathematical character; typically, their modeling requires domain knowledge and consideration of specific data characteristics as well as analysis questions.
Therefore all our research projects are embedded into applications. We work on problems in biology, biophysics, neuroscience, medicine, materials science, fluid mechanics, meteorology and climate research. Furthermore, we develop solutions for simulation-based therapy planning to advance individualized medicine.
For the development of practically useful analysis systems, we develop, adapt and combine methods of data analysis, image analysis, geometry processing, computer graphics, data visualization, machine learning and human-computer interaction.
The software solutions are interactive, semi-automatic or fully automatic, depending on factors such as the complexity of the analysis tasks, the degree of automation attainable and the size of the data sets to be analyzed. This flexible approach enables us to solve complex tasks that cannot be fully automated and that require the human in the loop.
The developed research software is made available to application partners, with whom we collaborate to clarify the analysis tasks, to evaluate the quality of the algorithmic solutions and to improve them. Mature solutions are transferred to industrial partners, who integrate these into products and distribute them.
Publications
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Christian Jung, Anna Nowacka, Tin Barisin, Dietmar Meinel, Olaf Paetsch, Szymon Grzesiak, Michael Salamon, Katja Schladitz, Claudia Redenbach, Matthias Pahn | 3d imaging and analysis of cracks in loaded concrete samples. 12th Conference on Industrial Computed Tomography (iCT) 2023, 27 February - 2 March 2023 in Fürth, Germany | e-Journal of Nondestructive Testing, 28(3), 2023 |
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Nicolas Klenert, Verena Lepper, Daniel Baum | A Local Iterative Approach for the Extraction of 2D Manifolds from Strongly Curved and Folded Thin-Layer Structures | IEEE Transactions on Visualization and Computer Graphics, 2023 (epub ahead of print) |
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Sumit Kumar Vohra, Philipp Harth, Yasuko Isoe, Armin Bahl, Haleh Fotowat, Florian Engert, Hans-Christian Hege, Daniel Baum | A Visual Interface for Exploring Hypotheses about Neural Circuits | IEEE Transactions on Visualization and Computer Graphics, 2023 (accepted for publication, preprint available as ZIB-Report 23-07) |
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Stephan Oehme, Philippe Moewis, Heide Boeth, Benjamin Bartek, Christoph von Tycowicz, Rainald Ehrig, Georg Duda, Tobias Jung | Altered knee kinematics after posterior cruciate single-bundle reconstruction - a comprehensive prospective biomechanical in vivo analysis | Frontiers in Bioengineering and Biotechnology, 2023 (under review) |
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Martin Grewe | An Extended 3D Morphable Face Model with Applications in Experimental Psychology | Doctoral thesis, Technische Universität Berlin, Stefan Zachow (Advisor), 2023 |
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Sahar Iravani, Tim Conrad | An Interpretable Deep Learning Approach for Biomarker Detection in LC-MS Proteomics Data | IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20(1), pp. 151-161, 2023 |
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Evropi Toulkeridou, Carlos Enrique Gutierrez, Daniel Baum, Kenji Doya, Evan P. Economo | Automated segmentation of insect anatomy from micro-CT images using deep learning | Natural Sciences, 3(4), 2023 |
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Moritz Schubotz, Eloi Ferrer, Johannes Stegmüller, Daniel Mietchen, Olaf Teschke, Larissa Pusch, Tim Conrad | Bravo MaRDI: A Wikibase Knowledge Graph on Mathematics | Proceedings of the 4th Wikidata Workshop 2022 co-located with the 22st International Semantic Web Conference (ISWC2023), 2023 (accepted for publication) |
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Marco Anteghini, Vitor Martins Dos Santos | Computational Approaches for Peroxisomal Protein Localization | Peroxisomes, Humana, New York, pp. 405-411, 2023, ISBN: 978-1-0716-3047-1 |
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Julianus Pfeuffer | Computational Methods for Protein Inference in Shotgun Proteomics Experiments | Doctoral thesis, Eberhard Karls Universität Tübingen, Oliver Kohlbacher, Knut Reinert (Advisors), 2023 |
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Luke L. Longren, Lennart Eigen, Ani Shubitidze, Oliver Lieschnegg, Daniel Baum, John A. Nyakatura, Thomas Hildebrandt, Michael Brecht | Dense Reconstruction of Elephant Trunk Musculature | Current Biology, Vol.33, pp. 1-8, 2023 |
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Lucas Siqueira Rodrigues, John Nyakatura, Stefan Zachow, Johann Habakuk Israel | Design Challenges and Opportunities of Fossil Preparation Tools and Methods | Proceedings of the 20th International Conference on Culture and Computer Science: Code and Materiality, 2023 |
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Sydney Paltra, Tim Conrad | Effectiveness of Paxlovid - A Review | Frontiers in Public Health, 2023 (revision under review) |
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Amnon Bleich, Antje Linnemann, Benjamin Jaidi, Bjoern H Diem, Tim Conrad | Enhancing ECG Analysis of Implantable Cardiac Monitor Data: An Efficient Pipeline for Multi-Label Classification | Machine Learning and Knowledge Extraction, 5(4), 2023 |
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Anna Sterzik, Nils Lichtenberg, Michael Krone, Daniel Baum, Douglas W. Cunningham, Kai Lawonn | Enhancing molecular visualization: Perceptual evaluation of line variables with application to uncertainty visualization | Computers & Graphics, Vol.114, pp. 401-413, 2023 |
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Berit Zemann, Mai-Lee Van Le, Rob E. Sherlock, Daniel Baum, Kakani Katija, Thomas Stach | Evolutionary traces of miniaturization in a giant – Comparative anatomy of brain and brain nerves in Bathochordaeus stygius (Tunicata, Appendicularia) | Journal of Morphology, 284(7), 2023 |
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Sebastian Müller, Sydney Paltra, Jakob Rehmann, Kai Nagel, Tim Conrad | Explicit modeling of antibody levels for infectious disease simulations in the context of SARS-CoV-2 | iScience, 26(9), 2023 |
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Martin Hanik | Geometric Data Analysis: Advancements of the Statistical Methodology and Applications | Doctoral thesis, Freie Universität Berlin, Christof Schütte, Christoph von Tycowicz (Advisors), 2023 |
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Lara Tomholt, Daniel Baum, Robert J. Wood, James C. Weaver | High-throughput segmentation, data visualization, and analysis of sea star skeletal networks | Journal of Structural Biology, 215(2), p. 107955, 2023 |
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Martin Hanik, Benjamin Ducke, Hans-Christian Hege, Friederike Fless, Christoph von Tycowicz | Intrinsic shape analysis in archaeology: A case study on ancient sundials | Journal on Computing and Cultural Heritage, 16(4), pp. 1-26, 2023 |
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Mingze Bai, Jingwen Deng, Chengxin Dai, Julianus Pfeuffer, Timo Sachsenberg, Yasset Perez-Riverol | LFQ-Based Peptide and Protein Intensity Differential Expression Analysis | J. Proteome Res., 22(6), pp. 2114-2123, 2023 |
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Mustafa Chaukair, Christof Schütte, Vikram Sunkara | On the Activation Space of ReLU Equipped Deep Neural Networks | Procedia Computer Science, pp. 624-635, Vol.222, 2023 |
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Erhun Giray Tuncay, Rıza Cenk Erdur, Tim Conrad | Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: PERSONA | IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20(3), pp. 2064-2077, 2023 |
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Marco Anteghini, Vitor AP Martins dos Santos, Edoardo Saccenti | PortPred: Exploiting deep learning embeddings of amino acid sequences for the identification of transporter proteins and their substrates | Journal of Cellular Biochemistry, 2023 (epub ahead of print) |
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Doğa Türkseven, Islem Rekik, Christoph von Tycowicz, Martin Hanik | Predicting Shape Development: A Riemannian Method | Shape in Medical Imaging, pp. 211-222, 2023 |
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Ege Şirin | Probabilistic Image Segmentation With Continuous Shape Representations | Master's thesis, Freie Universität Berlin, Tamaz Amiranashvili (Advisor), 2023 |
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Philipp Harth, Arco Bast, Jakob Troidl, Bjorge Meulemeester, Hanspeter Pfister, Johanna Beyer, Marcel Oberlaender, Hans-Christian Hege, Daniel Baum | Rapid Prototyping for Coordinated Views of Multi-scale Spatial and Abstract Data: A Grammar-based Approach | Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), 2023 |
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Esfandiar Navayazdani, Felix Ambellan, Martin Hanik, Christoph von Tycowicz | Sasaki Metric for Spline Models of Manifold-Valued Trajectories | Computer Aided Geometric Design, Vol.104, 2023 |
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Giovani Bressan Fogalli, Sérgio Roberto Peres Line, Daniel Baum | Segmentation of tooth enamel microstructure images using classical image processing and U-Net approaches | Frontiers in Imaging, Vol.2, 2023 |
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Robert Kiewisz, Daniel Baum, Thomas Müller-Reichert, Gunar Fabig | Serial-section electron tomography and quantitative analysis of the microtubule organization in 3D-reconstructed mitotic spindles | Bio-protocol, 13(20), 2023 |
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Jan Boelts, Philipp Harth, Richard Gao, Daniel Udvary, Felipe Yanez, Daniel Baum, Hans-Christian Hege, Marcel Oberlaender, Jakob H. Macke | Simulation-based inference for efficient identification of generative models in computational connectomics | PLOS Computational Biology, 19(9), 2023 (preprint available as ) |
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Oliver Wagendorf, Susanne Nahles, Kirstin Vach, Florian Kernen, Stefan Zachow, Max Heiland, Tabea Flügge | The impact of teeth and dental restorations on gray value distribution in cone-beam computer tomography - a pilot study | International Journal of Implant Dentistry, 9(27), 2023 |
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Eftychia E. Kontou, Axel Walter, Oliver Alka, Julianus Pfeuffer, Timo Sachsenberg, Omkar Mohite, Matin Nuhamunanda, Oliver Kohlbacher, Tilmann Weber | UmetaFlow: An untargeted metabolomics workflow for high-throughput data processing and analysis | Journal of Cheminformatics, Vol.15, 2023 |
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Kateryna Melnyk, Kuba Weimann, Tim Conrad | Understanding microbiome dynamics via interpretable graph representation learning | Scientific Reports, Vol.13, p. 2058, 2023 |
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Lisa Bautz | Unsupervised Shape Correspondence Estimation for Anatomical Shapes | Master's thesis, Technische Universität Berlin, Stefan Zachow, Tamaz Amiranashvili (Advisors), 2023 |
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Lucas Siqueira Rodrigues, Felix Riehm, Stefan Zachow, Johann Habakuk Israel | VoxSculpt: An Open-Source Voxel Library for Tomographic Volume Sculpting in Virtual Reality | 2023 9th International Conference on Virtual Reality (ICVR), Xianyang, China, 2023, pp. 515-523, 2023 |
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2022 |
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Fidji Berio, Yann Bayle, Sylvie Agret, Daniel Baum, Nicolas Goudemand, Mélanie Debiais-Thibaud | 3D models related to the publication: Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula | MorphoMuseuM, 2022 |
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Esfandiar Nava-Yazdani, Hans-Christian Hege, Christoph von Tycowicz | A Hierarchical Geodesic Model for Longitudinal Analysis on Manifolds | Journal of Mathematical Imaging and Vision, 64(4), pp. 395-407, 2022 (preprint available as ZIB-Report 21-39) |
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Martha Paskin, Mason Dean, Daniel Baum, Christoph von Tycowicz | A Kendall Shape Space Approach to 3D Shape Estimation from 2D Landmarks | Computer Vision -- ECCV 2022, pp. 363-379, 2022 |
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Martha Paskin, Daniel Baum, Mason N. Dean, Christoph von Tycowicz | A Kendall Shape Space Approach to 3D Shape Estimation from 2D Landmarks -- Source Code and Data | 2022 |
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Martin Hanik, Hans-Christian Hege, Christoph von Tycowicz | A Nonlinear Hierarchical Model for Longitudinal Data on Manifolds | 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), pp. 1-5, 2022 |
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Julius Mayer, Daniel Baum, Felix Ambellan, Christoph von Tycowicz | A Soft-Correspondence Approach to Shape-based Disease Grading with Graph Convolutional Networks | Proceedings of Machine Learning Research, pp. 85-95, Vol.194, 2022 |
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Philipp Harth, Sumit Vohra, Daniel Udvary, Marcel Oberlaender, Hans-Christian Hege, Daniel Baum | A Stratification Matrix Viewer for Analysis of Neural Network Data | Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), 2022 |
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Vikram Sunkara, Angus Lewis, Giang T. Nguyen, Malgorzata M. O'Reilly, Nigel Bean | A discontinuous Galerkin method for approximating the stationary distribution of stochastic fluid-fluid processes | Methodology and Computing in Applied Probability, 2022 |
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Dimiter Prodanov, Sumit Kumar Vohra | Active Segmentation: Differential Geometry meets Machine Learning | Proceedings of the 23rd International Conference on Computer Systems and Technologies, pp. 1-6, 2022 |
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Kaitlyn P Becker, Clark Teeple, Nicholas Charles, Yeonsu Jung, Daniel Baum, James C Weaver, L. Mahadevan, Robert J Wood | Active entanglement enables stochastic, topological grasping | PNAS, 119(42), p. e2209819119, 2022 |
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Lucas Siqueira Rodrigues, John Nyakatura, Stefan Zachow, Johann Habakuk Israel | An Immersive Virtual Paleontology Application | 13th International Conference on Human Haptic Sensing and Touch Enabled Computer Applications, EuroHaptics 2022, pp. 478-481, 2022 |
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Natalia Mikula, Tom Dörffel, Daniel Baum, Hans-Christian Hege | An Interactive Approach for Identifying Structure Definitions | Computer Graphics Forum, 41(3), pp. 321-332, 2022 |
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Martin Hanik, Hans-Christian Hege, Christoph von Tycowicz | Bi-invariant Dissimilarity Measures for Sample Distributions in Lie Groups | SIAM Journal on Mathematics of Data Science, 4(4), pp. 1223-1249, 2022 |
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Kenrick Schulze, Felix Peppert, Christof Schütte, Vikram Sunkara | Chimeric U-Net–Modifying the standard U-Net towards Explainability | bioRxiv, 2022 (under review) |
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Mona Rams, Tim Conrad | Dictionary learning allows model-free pseudotime estimation of transcriptomics data | BMC Genomics, Vol.23, 2022 |
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Korbinian Glatzeder, Igor Komnik, Felix Ambellan, Stefan Zachow, Wolfgang Potthast | Dynamic pressure analysis of novel interpositional knee spacer implants in 3D-printed human knee models | Scientific Reports, Vol.12, 2022 |
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Felix Ambellan | Efficient Riemannian Statistical Shape Analysis with Applications in Disease Assessment | Doctoral thesis, Freie Universität Berlin, Christof Schütte, Christoph von Tycowicz (Advisors), 2022 |
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Martha Paskin | Estimating 3D Shape of the Head Skeleton of Basking Sharks Using Annotated Landmarks on a 2D Image | Master's thesis, Freie Universität Berlin, Daniel Baum, Christoph von Tycowicz, Mason N. Dean (Advisors), 2022 |
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Fidji Berio, Yann Bayle, Daniel Baum, Nicolas Goudemand, Mélanie Debiais-Thibaud | Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula populations | PeerJ - Aquatic Biology, p. 10:e13575, 2022 |
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Adele Myers, Saiteja Utpala, Shubham Talbar, Sophia Sanborn, Christian Shewmake, Claire Donnat, Johan Mathe, Umberto Lupo, Rishi Sonthalia, Xinyue Cui, Tom Szwagier, Arthur Pignet, Andri Bergsson, Søren Hauberg, Dmitriy Nielsen, Stefan Sommer, David Klindt, Erik Hermansen, Melvin Vaupel, Benjamin Dunn, Jeffrey Xiong, Noga Aharony, Itsik Pe’er, Felix Ambellan, Martin Hanik, Esfandiar Navayazdani, Christoph von Tycowicz, Nina Miolane | ICLR 2022 Challenge for Computational Geomerty & Topology: Design and Results | Proceedings of Topology, Algebra, and Geometry in Learning, pp. 269-276, Vol.196, Proceedings of Machine Learning Research, 2022 |
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Sahar Iravani | Interpretable Deep Learning Approaches for Biomarker Detection from High-Dimensional Biomedical Data | Doctoral thesis, Freie Universität Berlin, Tim Conrad (Advisor), 2022 |
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David Lüdke, Tamaz Amiranashvili, Felix Ambellan, Ivan Ezhov, Bjoern Menze, Stefan Zachow | Landmark-free Statistical Shape Modeling via Neural Flow Deformations | Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, Vol.13432, Lecture Notes in Computer Science, 2022 |
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Sarah Ehlers, Daniel Baum, Roland Mühlethaler, Hannelore Hoch, Peter Bräunig | Large abdominal mechanoreceptive sense organs in small plant-dwelling insects | Biology Letters, 18(4), 2022 |
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Tamaz Amiranashvili, David Lüdke, Hongwei Li, Bjoern Menze, Stefan Zachow | Learning Shape Reconstruction from Sparse Measurements with Neural Implicit Functions | Medical Imaging with Deep Learning, 2022 |
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Patrick E Obermeier, Albert Heim, Barbara Biere, Elias Hage, Maren Alchikh, Tim Conrad, Brunhilde Schweiger, Barbara A Rath | Linking digital surveillance and in-depth virology to study clinical patterns of viral respiratory infections in vulnerable patient populations | iScience, 25(5), 2022 |
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Alejandra Laguillo-Diego, Robert Kiewisz, Carlos Martí-Gómez, Daniel Baum, Thomas Müller-Reichert, Isabelle Vernos | MCRS1 modulates the heterogeneity of microtubule minus-end morphologies in mitotic spindles | Molecular Biology of the Cell, 34(1), 2022 |
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David Lüdke | Neural flow-based deformations for statistical shape modelling | Master's thesis, Johann Wolfgang Goethe-Universität Frankfurt, Tamaz Amiranashvili, Stefan Zachow (Advisors), 2022 |
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Mona Milena Rams | New approaches for unsupervised transcriptomic data analysis based on Dictionary learning | Doctoral thesis, Freie Universität Berlin, Tim Conrad (Advisor), 2022 |
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Esfandiar Nava-Yazdani, Martin Hanik, Felix Ambellan, Christoph von Tycowicz | On Gradient Formulas in an Algorithm for the Logarithm of the Sasaki Metric | ZIB-Report 22-12 |
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Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara | On the Sufficient Condition for Solving the Gap-Filling Problem Using Deep Convolutional Neural Networks | IEEE Transactions on Neural Networks and Learning Systems, 33(11), pp. 6194-6205, 2022 |
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Lennart Eigen, Daniel Baum, Mason N. Dean, Daniel Werner, Jan Wölfer, John A. Nyakatura | Ontogeny of a tessellated surface: carapace growth of the longhorn cowfish Lactoria cornuta | Journal of Anatomy, 241(3), pp. 565-580, 2022 |
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Stephan Oehme, Philippe Moewis, Heide Boeth, Benjamin Bartek, Annika Lippert, Christoph von Tycowicz, Rainald Ehrig, Georg Duda, Tobias Jung | PCL insufficient patients with increased translational and rotational passive knee joint laxity have no increased range of anterior–posterior and rotational tibiofemoral motion during level walking | Scientific Reports, 12(1), pp. 1-11, 2022 |
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Annemarie Lang, Antja Vester, M. Ferreira-Gomes, G.M. Guerra, Fredrich R. Heinrich, C.C. Götzke, Sebastian Kurmies, Vikram Sunkara, Pawel Durek, Joel D. Boerckel, Mir-Farzin Mashreghi | PIPELINE FOR SINGLE CELL SEQUENCING OF HUMAN CHONDROCYTE PELLET CULTURES TO DELINEATE IL-1β MODULATED CHANGES IN CELL HETEROGENEITY | Osteoarthritis and Cartilage, 30(Supplement 1), p. S90, 2022 |
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Benedikt Schmitt, Jürgen Titschack, Daniel Baum | Polyp-Cavity Segmentation of Cold-Water Corals guided by Ambient Occlusion and Ambient Curvature | Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), 2022 |
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Martin Hanik, Mehmet Arif Demirtaş, Mohammed Amine Gharsallaoui, Islem Rekik | Predicting cognitive scores with graph neural networks through sample selection learning | Brain Imaging and Behavior, Vol.16, pp. 1123-1138, 2022 |
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Saeed Mohammadzadeh, Vítor H. Nascimento, Rodrigo C. de Lamare, Noushin Hajarolasvadi | Robust Beamforming Based on Complex-Valued Convolutional Neural Networks for Sensor Arrays | IEEE Signal Processing Letters, Vol.29, pp. 2018-2021, 2022 |
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Ariel Caputo, Marco Emporio, Andrea Giachetti, Marco Cristani, Guido Borghi, Andrea D'Eusanio, Minh-Quan Le, Hai-Dang Nguyen, Minh-Triet Tran, Felix Ambellan, Martin Hanik, Esfandiar Navayazdani, Christoph von Tycowicz | SHREC 2022 Track on Online Detection of Heterogeneous Gestures | Computers and Graphics, Vol.107, pp. 241-251, 2022 |
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Daniel Udvary, Philipp Harth, Jakob H. Macke, Hans-Christian Hege, Christiaan P. J. de Kock, Bert Sakmann, Marcel Oberlaender | The Impact of Neuron Morphology on Cortical Network Architecture | Cell Reports, 39(2), 2022 |
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Carl Martin Grewe, Tuo Liu, Andrea Hildebrandt, Stefan Zachow | The Open Virtual Mirror Framework for Enfacement Illusions - Enhancing the Sense of Agency With Avatars That Imitate Facial Expressions | Behavior Research Methods, 2022 |
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Robert Kiewisz, Gunar Fabig, William Conway, Daniel Baum, Daniel Needleman, Thomas Müller-Reichert | Three-dimensional structure of kinetochore-fibers in human mitotic spindles | eLife, Vol.11, p. e75459, 2022 |
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Martin Hanik, Christoph von Tycowicz | Triangle meshes of shadow-recieving surfaces of ancient sundials | 2022 |
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Margarita Kostré, Vikram Sunkara, Christof Schütte, Natasa Djurdjevac Conrad | Understanding the Romanization Spreading on Historical Interregional Networks in Northern Tunisia | Applied Network Science, Vol.7, 2022 (preprint available as ZIB-Report 22-10) |
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Manish Sahu | Vision-based Context-awareness in Minimally Invasive Surgical Video Streams | Doctoral thesis, Technische Universität Berlin, Stefan Zachow, Anirban Mukhopadhyay (Advisors), 2022 |
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Noushin Hajarolasvadi, Vikram Sunkara, Sagar Khavnekar, Florian Beck, Robert Brandt, Daniel Baum | Volumetric macromolecule identification in cryo-electron tomograms using capsule networks | BMC Bioinformatics, 23(360), 2022 |
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2021 |
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Nada Cvetkovic, Tim Conrad, Han Cheng Lie | A Convergent Discretisation Method for Transition Path Theory for Diffusion Processes | Multiscale Modeling & Simulation, 19(1), pp. 242-266, 2021 |
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Alexey Shestakov | A Deep Learning Method for Automated Detection of Meniscal Tears in Meniscal Sub-Regions in 3D MRI Data | Master's thesis, Freie Universität Berlin, Tack Alexander, Zachow Stefan (Advisors), 2021 |
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Alexander Tack, Alexey Shestakov, David Lüdke, Stefan Zachow | A deep multi-task learning method for detection of meniscal tears in MRI data from the Osteoarthritis Initiative database | Frontiers in Bioengineering and Biotechnology, section Biomechanics, pp. 28-41, 2021 (preprint available as ZIB-Report 21-33) |
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Thomas Picht, Maxime Le Calve, Rosario Tomasello, Lucius Fekonja, Mohammad Fardin Gholami, Matthias Bruhn, Carola Zwick, Jürgen P. Rabe, Claudia Müller-Birn, Peter Vajkoczy, Igor M. Sauer, Stefan Zachow, John A. Nyakatura, Patricia Ribault, Friedemann Pulvermüller | A note on neurosurgical resection and why we need to rethink cutting | Neurosurgery, 89(5), pp. 289-291, 2021 |
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Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M. Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexovy, Björn Grüning, Melanie Christine Föll, Johannes Griss, Marc Vaudel, Enrique Audain, Marie Locard-Paulet, Michael Turewicz, Martin Eisenacher, Julian Uszkoreit, Tim Van Den Bossche, Veit Schwämmle, Henry Webel, Stefan Schulze, David Bouyssié, Savita Jayaram, Vinay Kumar Duggineni, Patroklos Samaras, Mathias Wilhelm, Meena Choi, Mingxun Wang, Oliver Kohlbacher, Alvis Brazma, Irene Papatheodorou, Nuno Bandeira, Eric W. Deutsch, Juan Antonio Vizcaíno, Mingze Bai, Timo Sachsenberg, Lev I. Levitsky, Yasset Perez-Riverol | A proteomics sample metadata representation for multiomics integration and big data analysis | Nature Communications, 12(5854), 2021 |
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Jianning Li, Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Estacio, Christian Doenitz, Heiko Ramm, Haochen Shi, Xiaojun Chen, Franco Matzkin, Virginia Newcombe, Enzo Ferrante, Yuan Jin, David G. Ellis, Michele R. Aizenberg, Oldrich Kodym, Michal Spanel, Adam Herout, James G. Mainprize, Zachary Fishman, Michael R. Hardisty, Amirhossein Bayat, Suprosanna Shit, Bomin Wang, Zhi Liu, Matthias Eder, Antonio Pepe, Christina Gsaxner, Victor Alves, Ulrike Zefferer, Cord von Campe, Karin Pistracher, Ute Schäfer, Dieter Schmalstieg, Bjoern H. Menze, Ben Glocker, Jan Egger | AutoImplant 2020 - First MICCAI Challenge on Automatic Cranial Implant Design | IEEE Transactions on Medical Imaging, 40(9), pp. 2329-2342, 2021 |
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Evropi Toulkeridou, Carlos Enrique Gutierrez, Daniel Baum, Kenji Doya, Evan P. Economo | Automated segmentation of insect anatomy from micro-CT images using deep learning | bioRxiv, 2021 |
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Vikram Sunkara, Gitta A. Heinz, Frederik F. Heinrich, Pawel Durek, Ali Mobasheri, Mir-Farzin Mashreghi, Annemarie Lang | Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint | Osteoarthritis and Cartilage, 29(6), pp. 905-914, 2021 |
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Niklas Wulkow, Péter Koltai, Vikram Sunkara, Christof Schütte | Data-driven modelling of nonlinear dynamics by barycentric coordinates and memory | J. Stat. Phys., 2021 (under review) |
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Johannes von Lindheim, Abhishek Harikrishnan, Tom Dörffel, Rupert Klein, Peter Koltai, Natalia Mikula, Annette Müller, Peter Névir, George Pacey, Robert Polzin, Nikki Vercauteren | Definition, detection and tracking of persistent structures in atmospheric flows | arXiv, 2021 |
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Tom Doerffel, Ariane Papke, Rupert Klein, Natalia Ernst, Piotr K. Smolarkiewicz | Dynamics of tilted atmospheric vortices under asymmetric diabatic heating | Theoretical and Computational Fluid Dynamics, 35(6), pp. 831-873, 2021 |
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Jessica Hembus, Felix Ambellan, Stefan Zachow, Rainer Bader | Establishment of a rolling-sliding test bench to analyze abrasive wear propagation of different bearing materials for knee implants | Applied Sciences, 11(4), 2021 |
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Sofi Tiwari | Facial Landmark Detection on 3D Surface Scans using Geometric Deep Learning | Master's thesis, Freie Universität Berlin, Martin Grewe, Tamaz Amiranashvili, Stefan Zachow (Advisors), 2021 |
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Alexander Tack, Bernhard Preim, Stefan Zachow | Fully automated Assessment of Knee Alignment from Full-Leg X-Rays employing a "YOLOv4 And Resnet Landmark regression Algorithm" (YARLA): Data from the Osteoarthritis Initiative | Computer Methods and Programs in Biomedicine, 205(106080), 2021 |
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Husen M. Umer, Yafeng Zhu, Julianus Pfeuffer, Timo Sachsenberg, Janne Lehtiö, Rui Branca, Yasset Perez-Riverol | Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides | Bioinformatics, pp. 1470-1472, 2021 |
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Felix Ambellan, Stefan Zachow, Christoph von Tycowicz | Geodesic B-Score for Improved Assessment of Knee Osteoarthritis | Proc. Information Processing in Medical Imaging (IPMI), pp. 177-188, Lecture Notes in Computer Science, 2021 (preprint available as ZIB-Report 21-09) |
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Alexia N. Raharinirina, Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara | Inferring gene regulatory networks from single-cell RNA-seq temporal snapshot data requires higher-order moments | Patterns, 2(9), 2021 (preprint available as ) |
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Jan Krause | Investigation of Options to Handle 3D MRI Data via Convolutional Neural Networks Application in Knee Osteoarthritits Classification | Master's thesis, Otto-von-Guericke-Universität Magdeburg, Alexander Tack, Stefan Zachow (Advisors), 2021 |
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Ina Lantzsch, Che-Hang Yu, Yu-Zen Chen, Vitaly Zimyanin, Hossein Yazdkhasti, Norbert Lindow, Erik Szentgyoergyi, Ariel M Pani, Steffen Prohaska, Martin Srayko, Sebastian Fürthauer, Stefanie Redemann | Microtubule reorganization during female meiosis in C. elegans | eLife, Vol.10, p. e58903, 2021 |
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Felix Ambellan, Martin Hanik, Christoph von Tycowicz | Morphomatics: Geometric morphometrics in non-Euclidean shape spaces | 2021 |
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Upanshu Sharma, Wei Zhang | Non-reversible sampling schemes on submanifolds | SIAM Journal on Numerical Analysis, 59(6), pp. 2989-3031, 2021 |
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arXiv DOI |
Dev Punjabi | Orientation-invariant Dense Correspondence using Graph Convolutional Neural Networks | Master's thesis, Universität Potsdam, Martin Grewe, Tamaz Amiranashvili, Zachow Stefan (Advisors), 2021 |
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Philippe Moewis, René Kaiser, Adam Trepczynski, Christoph von Tycowicz, Leonie Krahl, Ansgar Ilg, Johannes Holz, Georg Duda | Patient specific resurfacing implant knee surgery in subjects with early osteoarthritis results in medial pivot and lateral femoral rollback during flexion: A retrospective pilot study | Knee Surgery, Sports Traumatology, Arthroscopy, 2021 |
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Hanna Wulkow, Tim Conrad, Natasa Djurdjevac Conrad, Sebastian A. Müller, Kai Nagel, Christof Schütte | Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts | PLOS One, 16(4), 2021 |
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Raphael Badel | Registration-based Tracking of Regions Defined by Level Sets of Time-dependent Scalar Fields | Master's thesis, Universität Potsdam, Henning Bordihn, Daniel Baum (Advisors), 2021 |
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C. Martin Grewe, Stefan Zachow | Release of the FexMM for the Open Virtual Mirror Framework | 2021 |
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Daniel Baum, Felix Herter, John Møller Larsen, Achim Lichtenberger, Rubina Raja | Revisiting the Jerash Silver Scroll: a new visual data analysis approach | Digital Applications in Archaeology and Cultural Heritage, Vol.21, p. e00186, 2021 |
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Felix Ambellan, Stefan Zachow, Christoph von Tycowicz | Rigid Motion Invariant Statistical Shape Modeling based on Discrete Fundamental Forms | Medical Image Analysis, Vol.73, 2021 |
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DOI arXiv |
Ivan Sipiran, Patrick Lazo, Cristian Lopez, Nihar Bagewadi, Benjamin Bustos, Hieu Dao, Shankar Gangisetty, Martin Hanik, Ngoc-Phuong Ho-Thi, Mike Holenderski, Dmitri Jarnikov, Arniel Labrada, Stefan Lengauer, Roxane Licandro, Dinh-Huan Nguyen, Thang-Long Nguyen-Ho, Luis A. Pérez Rey, Bang-Dang Pham, Minh-Khoi Pham, Reinhold Preiner, Tobias Schreck, Quoc-Huy Trinh, Loek Tonnaer, Christoph von Tycowicz, The-Anh Vu-Le | SHREC 2021: Retrieval of Cultural Heritage Objects | Computers and Graphics, Vol.100, pp. 1-20, 2021 |
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Sarah Ehlers, Andreas Wessel, Daniel Baum | Segmentation of abdominal chordotonal organs based on semithin serial sections in the Rhododendron leafhopper Graphocephala fennahi (Cicadomorpha: Cicadellidae) | 2021 |
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Norbert Lindow, Florian Brünig, Vincent J. Dercksen, Gunar Fabig, Robert Kiewisz, Stefanie Redemann, Thomas Müller-Reichert, Steffen Prohaska, Daniel Baum | Semi-automatic stitching of filamentous structures in image stacks from serial-section electron tomography | Journal of Microscopy, 284(1), pp. 25-44, 2021 |
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Manish Sahu, Anirban Mukhopadhyay, Stefan Zachow | Simulation-to-Real domain adaptation with teacher-student learning for endoscopic instrument segmentation | International Journal of Computer Assisted Radiology and Surgery, Vol.16, pp. 849-859, 2021 |
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Wei Zhang | Some new results on relative entropy production, time reversal, and optimal control of time-inhomogeneous diffusion processes | Journal of Mathematical Physics, 62(4), 2021 |
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arXiv DOI |
Carl Martin Grewe, Tuo Liu, Christoph Kahl, Hildebrandt Andrea, Stefan Zachow | Statistical Learning of Facial Expressions Improves Realism of Animated Avatar Faces | Frontiers in Virtual Reality, Vol.2, pp. 1-13, 2021 |
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Sumit Kumar Vohra, Dimiter Prodanov | The Active Segmentation Platform for Microscopic Image Classification and Segmentation | Brain Sciences. 2021, 11(12), p. 1645, 2021 |
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Felix Herter, Hans-Christian Hege, Markus Hadwiger, Verena Lepper, Daniel Baum | Thin-Volume Visualization on Curved Domains | Computer Graphics Forum, 40(3), pp. 147-157, 2021 |
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Alexander Tack, Felix Ambellan, Stefan Zachow | Towards novel osteoarthritis biomarkers: Multi-criteria evaluation of 46,996 segmented knee MRI data from the Osteoarthritis Initiative | PLOS One, 16(10), 2021 |
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Alexander Tack, Felix Ambellan, Stefan Zachow | Towards novel osteoarthritis biomarkers: Multi-criteria evaluation of 46,996 segmented knee MRI data from the Osteoarthritis Initiative (Supplementary Material) | PLOS One, 16(10), 2021 |
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K. Weimann, Tim Conrad | Transfer Learning for ECG Classification | Scientific Reports, Vol.11, 2021 |
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Laura Estacio, Moritz Ehlke, Alexander Tack, Eveling Castro-Gutierrez, Hans Lamecker, Rensso Mora, Stefan Zachow | Unsupervised Detection of Disturbances in 2D Radiographs | 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), pp. 367-370, 2021 |
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Anjany Sekuboyina, Malek E. Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukačka, Christian Payer, Darko Štern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubicek, Jiri Chmelik, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke | VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images | Medical Image Analysis, Vol.73, 2021 |
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YongTian Liang, Chengji Piao, Christine B. Beuschel, David Toppe, Laxmikanth Kollipara, Boris Bogdanow, Marta Maglione, Janine Lützkendorf, Jason Chun Kit See, Sheng Huang, Tim Conrad, Ulrich Kintscher, Frank Madeo, Fan Liu, Albert Sickmann, Stephan J. Sigrist | eIF5A hypusination, boosted by dietary spermidine, protects from premature brain aging and mitochondrial dysfunction | Cell Reports, 35(2), 2021 |
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2020 |
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Moritz Ehlke | 3D Reconstruction of Anatomical Structures from 2D X-ray Images | Doctoral thesis, Technische Universität Berlin, Stefan Zachow, Hans Lamecker (Advisors), 2020 |
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Ralf F. Ziesche, Tobias Arlt, Donal P. Finegan, Thomas M.M. Heenan, Alessandro Tengattini, Daniel Baum, Nikolay Kardjilov, Henning Markötter, Ingo Manke, Winfried Kockelmann, Dan J.L. Brett, Paul R. Shearing | 4D imaging of lithium-batteries using correlative neutron and X-ray tomography with a virtual unrolling technique | Nature Communications, Vol.11, p. 777, 2020 |
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Daniel Udvary, Philipp Harth, Jakob H. Macke, Hans-Christian Hege, Christiaan P. J. de Kock, Bert Sakmann, Marcel Oberlaender | A Theory for the Emergence of Neocortical Network Architecture | BioRxiv, 2020 |
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Maraike Willsch, Frank Friedrich, Daniel Baum, Ivo Jurisch, Michael Ohl | A comparative description of the mesosomal musculature in Sphecidae and Ampulicidae (Hymenoptera, Apoidea) using 3D techniques | Deutsche Entomologische Zeitschrift, 67(1), pp. 51-67, 2020 |
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Huy Le Duc, Tim Conrad | A light-weight and highly flexible software system for analyzing large bio-medical datasets | Future Generation Computer Systems, 2020 (under review) |
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Bernhard Fröhler, Tim Elberfeld, Torsten Möller, Hans-Christian Hege, Jan De Beenhouwer, Jan Sijbers, Johann Kastner, Christoph Heinzl | Analysis and comparison of algorithms for the tomographic reconstruction of curved fibres | Nondestructive Testing and Evaluation, 35(3), pp. 328-341, 2020 |
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Manish Sahu, Angelika Szengel, Anirban Mukhopadhyay, Stefan Zachow | Analyzing laparoscopic cholecystectomy with deep learning: automatic detection of surgical tools and phases | 28th International Congress of the European Association for Endoscopic Surgery (EAES), 2020 |
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Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Estacio, Christian Doenitz, Heiko Ramm | Automated Virtual Reconstruction of Large Skull Defects using Statistical Shape Models and Generative Adversarial Networks | Towards the Automatization of Cranial Implant Design in Cranioplasty, Vol.12439, pp. 16-27, 2020 |
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Martin Hanik, Hans-Christian Hege, Christoph von Tycowicz | Bi-invariant Two-Sample Tests in Lie Groups for Shape Analysis | Shape in Medical Imaging, pp. 44-54, 2020 |
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arXiv DOI |
Jan Brüning, Thomas Hildebrandt, Werner Heppt, Nora Schmidt, Hans Lamecker, Angelika Szengel, Natalja Amiridze, Heiko Ramm, Matthias Bindernagel, Stefan Zachow, Leonid Goubergrits | Characterization of the Airflow within an Average Geometry of the Healthy Human Nasal Cavity | Scientific Reports, 3755(10), 2020 |
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Júlia Chaumel, Merlind Schotte, Joseph J. Bizzarro, Paul Zaslansky, Peter Fratzl, Daniel Baum, Mason N. Dean | Co-aligned chondrocytes: Zonal morphological variation and structured arrangement of cell lacunae in tessellated cartilage | Bone, Vol.134, p. 115264, 2020 (preprint available as ZIB-Report 20-04) |
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Carmen Juds, Johannes Schmidt, Michael Weller, Thorid Lange, Tim Conrad, Hans Boerner | Combining Phage Display and Next-generation Sequencing for Materials Sciences: A Case Study on Probing Polypropylene Surfaces | Journal of the American Chemical Society, 142(24), pp. 10624-10628, 2020 |
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Mona Rams, Tim Conrad | Dictionary Learning for transcriptomics data reveals type-specific gene modules in a multi-class setting | it - Information Technology, 62(3-4), 2020 |
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Gerhard Scholtz, David Knötel, Daniel Baum | D’Arcy W. Thompson’s Cartesian transformations: a critical evaluation | Zoomorphology, Vol.139, pp. 293-308, 2020 |
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Manish Sahu, Ronja Strömsdörfer, Anirban Mukhopadhyay, Stefan Zachow | Endo-Sim2Real: Consistency learning-based domain adaptation for instrument segmentation | Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), Part III, Vol.12263, Lecture Notes in Computer Science, 2020 (preprint available as ) |
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Esfandiar Nava-Yazdani, Hans-Christian Hege, T. J. Sullivan, Christoph von Tycowicz | Geodesic Analysis in Kendall's Shape Space with Epidemiological Applications | Journal of Mathematical Imaging and Vision, 62(4), pp. 549-559, 2020 |
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DOI arXiv |
Kateryna Melnyk, Grègoire Montavon, Stefan Klus, Tim Conrad | Graph Kernel Koopman Embedding for Human Microbiome Analysis | Applied Network Science, 5(96), 2020 |
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Merlind Schotte, Júlia Chaumel, Mason N. Dean, Daniel Baum | Image analysis pipeline for segmentation of a biological porosity network, the lacuno-canalicular system in stingray tesserae | MethodsX, Vol.7, p. 100905, 2020 (preprint available as ZIB-Report 20-12) |
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Gunther Mohr, Simon J. Altenburg, Alexander Ulbricht, Philipp Heinrich, Daniel Baum, Christiane Maierhofer, Kai Hilgenberg | In-situ defect detection in laser powder bed fusion by using thermography and optical tomography – comparison to computed tomography | Metals, 10(1), p. 103, 2020 |
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Daniel Baum, Felix Herter, Verena Lepper | Jerash Silver Scroll: Virtually Unfolded Volume | figshare, 2020 |
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Yannic Ege, Christian Foth, Daniel Baum, Christian S. Wirkner, Stefan Richter | Making spherical-harmonics-based Geometric Morphometrics (SPHARM) approachable for 3D images containing large cavity openings using Ambient Occlusion - a study using hermit crab claw shape variability | Zoomorphology, Vol.139, pp. 421-432, 2020 (preprint available as ZIB-Report 20-09) |
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Natalja Amiridze | Morphological indicators for limitations in nasal breathing | Bachelor's thesis, Freie Universität Berlin, Stefan Zachow, Heiko Ramm (Advisors), 2020 |
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Martin Hanik, Hans-Christian Hege, Anja Hennemuth, Christoph von Tycowicz | Nonlinear Regression on Manifolds for Shape Analysis using Intrinsic Bézier Splines | Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), pp. 617-626, 2020 |
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arXiv DOI |
Jens Buchmann, Bernhard Kaplan, Samuel Powell, Steffen Prohaska, Jan Laufer | Quantitative PA tomography of high resolution 3-D images: experimental validation in tissue phantoms | Photoacoustics, Vol.17, p. 100157, 2020 (preprint available as ZIB-Report 19-60) |
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Ana Prates Soares, Daniel Baum, Bernhard Hesse, Andreas Kupsch, Bernd Müller, Paul Zaslansky | Scattering and phase-contrast X-ray methods reveal damage to glass fibers in endodontic posts following dental bur trimming | Dental Materials, 37(2), pp. 201-211, 2020 |
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Norbert Lindow, Florian Brünig, Vincent J. Dercksen, Gunar Fabig, Robert Kiewisz, Stefanie Redemann, Thomas Müller-Reichert, Steffen Prohaska, Daniel Baum | Semi-automatic stitching of filamentous structures in image stacks from serial-section electron tomography | bioRxiv, 2020 |
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Gunar Fabig, Robert Kiewisz, Norbert Lindow, James A. Powers, Vanessa Cota, Luis J. Quintanilla, Jan Brugués, Steffen Prohaska, Diana S. Chu, Thomas Müller-Reichert | Sperm-specific meiotic chromosome segregation in C. elegans | eLife, Vol.9, p. e50988, 2020 |
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Manish Sahu, Angelika Szengel, Anirban Mukhopadhyay, Stefan Zachow | Surgical phase recognition by learning phase transitions | Current Directions in Biomedical Engineering (CDBME), 6(1), p. 20200037, 2020 |
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Selina Weiss, Carl Martin Grewe, Sally Olderbak, Benjamin Goecke, Laura Kaltwasser, Andrea Hildebrandt | Symmetric or not? A holistic approach to the measurement of fluctuating asymmetry from facial photographs | PsyArXiv, 2020 |
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Selina Weiss, Carl Martin Grewe, Sally Olderbak, Benjamin Goecke, Laura Kaltwasser, Andrea Hildebrandt | Symmetric or not? A holistic approach to the measurement of fluctuating asymmetry from facial photographs | Personality and Individual Differences, Vol.166, pp. 1-12, 2020 |
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Bahareh Banyassady, Luis Barba, Wolfgang Mulzer | Time-Space Trade-Offs for Computing Euclidean Minimum Spanning Trees | Journal of Computational Geometry (JoCG), Vol.11(1), pp. 525-547, 2020 |
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URN |
Christoph von Tycowicz | Towards Shape-based Knee Osteoarthritis Classification using Graph Convolutional Networks | 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI 2020), 2020 |
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arXiv DOI |
Anjany Sekuboyina, Amirhossein Bayat, Malek E. Husseini, Maximilian Löffler, Hongwei Li, Giles Tetteh, Jan Kukačka, Christian Payer, Darko Štern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Qingyue Wei, Kevin Brown, Matthias Wolf, Alexandre Kirszenberg, Élodie Puybareau, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke | VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images | arXiv, 2020 |
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Heinz-Eberhard Mahnke, Tobias Arlt, Daniel Baum, Hans-Christian Hege, Felix Herter, Norbert Lindow, Ingo Manke, Tzulia Siopi, Eve Menei, Marc Etienne, Verena Lepper | Virtual unfolding of folded papyri | Journal of Cultural Heritage, Vol.41, pp. 264-269, 2020 (preprint available as ZIB-Report 19-44) |
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2019 |
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Jens Buchmann, Bernhard Kaplan, Samuel Powell, Steffen Prohaska, Jan Laufer | 3D quantitative photoacoustic tomography using an adjoint radiance Monte Carlo model and gradient descent | Journal of Biomedical Optics, 24(6), p. 066001, 2019 (preprint available as ZIB-Report 19-16) |
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Robert Joachimsky, Lihong Ma, Christian Icking, Stefan Zachow | A Collision-Aware Articulated Statistical Shape Model of the Human Spine | Proc. of the 18th annual conference on Computer- and Robot-assisted Surgery (CURAC), pp. 58-64, 2019 |
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Esfandiar Nava-Yazdani, Hans-Christian Hege, Christoph von Tycowicz | A Geodesic Mixed Effects Model in Kendall's Shape Space | Proc. 7th MICCAI workshop on Mathematical Foundations of Computational Anatomy (MFCA), pp. 209-218, Vol.11846, Lecture Notes in Computer Science, 2019 (preprint available as ZIB-Report 19-49) |
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BibTeX DOI |
Felix Ambellan, Stefan Zachow, Christoph von Tycowicz | A Surface-Theoretic Approach for Statistical Shape Modeling | Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), Part IV, pp. 21-29, Vol.11767, Lecture Notes in Computer Science, 2019 (preprint available as ZIB-Report 19-20) |
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BibTeX DOI |
Bernhard Fröhler, Tim Elberfeld, Torsten Möller, Hans-Christian Hege, Johannes Weissenböck, Jan De Beenhouwer, Jan Sijbers, Johann Kastner, Christoph Heinzl | A Visual Tool for the Analysis of Algorithms for Tomographic Fiber Reconstruction in Materials Science | Computer Graphics Forum, 38(3), pp. 273-283, 2019 |
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Alexander Tack, Stefan Zachow | Accurate Automated Volumetry of Cartilage of the Knee using Convolutional Neural Networks: Data from the Osteoarthritis Initiative | IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 40-43, 2019 (preprint available as ZIB-Report 19-05) |
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BibTeX DOI |
Daniel Baum | An Evaluation of Color Maps for Visual Data Exploration | Science in Color: Visualizing Achromatic Knowledge, Bettina Bock von Wülfingen (Ed.), De Gruyter: Berlin, pp. 147-161, 2019 (preprint available as ZIB-Report 19-42) |
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Felix Ambellan, Stefan Zachow, Christoph von Tycowicz | An as-invariant-as-possible GL+(3)-based Statistical Shape Model | Proc. 7th MICCAI workshop on Mathematical Foundations of Computational Anatomy (MFCA), pp. 219-228, Vol.11846, Lecture Notes in Computer Science, 2019 (preprint available as ZIB-Report 19-46) |
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Robert Joachimsky | Approaching Spinal Kinematics using a Collision-Aware Articulated Deformable Model | Master's thesis, Beuth Hochschule für Technik Berlin, Stefan Zachow (Advisor), 2019 |
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Maren Alchikh, Tim Conrad, Xiaolin Ma, Eeva K. Broberg, P. Penttinen, J. Reiche, Barbara Biere, Brunhilde Schweiger, Barbara Rath, Christian Hoppe | Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care | Clinical Microbiology and Infection, 25(3), pp. 380.e9-380.e16, 2019 |
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Henok Hagos Gidey | Automated Hip Knee Ankle Angle Determination using Convolutional Neural Networks | Master's thesis, Otto-von-Guericke-Universität Magdeburg, Felix Ambellan, Alexander Tack, Stefan Zachow (Advisors), 2019 |
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Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow | Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative | Medical Image Analysis, 52(2), pp. 109-118, 2019 (preprint available as ZIB-Report 19-06) |
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BibTeX DOI |
Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow | Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative (Supplementary Material) | Medical Image Analysis, 52(2), pp. 109-118, 2019 (OAI-ZIB dataset) |
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Hassan Al Hajj, Manish Sahu, Mathieu Lamard, Pierre-Henri Conze, Soumali Roychowdhury, Xiaowei Hu, Gabija Marsalkaite, Odysseas Zisimopoulos, Muneer Ahmad Dedmari, Fenqiang Zhao, Jonas Prellberg, Adrian Galdran, Teresa Araujo, Duc My Vo, Chandan Panda, Navdeep Dahiya, Satoshi Kondo, Zhengbing Bian, Jonas Bialopetravicius, Chenghui Qiu, Sabrina Dill, Anirban Mukhopadyay, Pedro Costa, Guilherme Aresta, Senthil Ramamurthy, Sang-Woong Lee, Aurelio Campilho, Stefan Zachow, Shunren Xia, Sailesh Conjeti, Jogundas Armaitis, Pheng-Ann Heng, Arash Vahdat, Beatrice Cochener, Gwenole Quellec | CATARACTS: Challenge on Automatic Tool Annotation for cataRACT Surgery | Medical Image Analysis, 52(2), pp. 24-41, 2019 |
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Mona Prendke | Comparison of 2D and 3D CNNs for Classification of Knee MRI | Bachelor's thesis, Freie Universität Berlin, Alexander Tack, Felix Ambellan (Advisors), 2019 |
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Sahar Iravani, Tim Conrad | Deep Learning for Proteomics Data for Feature Selection and Classification | Machine Learning and Knowledge Extraction. CD-MAKE 2019, A. Holzinger, P. Kieseberg, A. Tjoa, E. Weippl (Eds.), Vol.11713, Lecture Notes in Computer Science, 2019 |
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Thomas Hildebrandt, Jan Joris Bruening, Hans Lamecker, Stefan Zachow, Werner Heppt, Nora Schmidt, Leonid Goubergrits | Digital Analysis of Nasal Airflow Facilitating Decision Support in Rhinosurgery | Facial Plastic Surgery, 35(1), pp. 1-8, 2019 |
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Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad | EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma | PLOS ONE, 14(1), 2019 |
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Wei Zhang | Ergodic SDEs on submanifolds and related numerical sampling schemes | ESAIM: Mathematical Modelling and Numerical Analysis, 2019 |
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arXiv |
Daisuke Sakurai, Kenji Ono, Hamish Carr, Jorji Nonaka, Tomohiro Kawanabe | Flexible Fiber Surfaces: A Reeb-Free Approach | Topological Methods in Data Analysis and Visualization V, Hamish Carr, Issei Fujishiro, Filip Sadlo, Shigeo Takahashi (Eds.), Springer, 2019 (preprint available as ZIB-Report 19-09) |
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Steffen Oeltze-Jaffra, Monique Meuschke, Mathias Neugebauer, Sylvia Saalfeld, Kai Lawonn, Gabor Janiga, Hans-Christian Hege, Stefan Zachow, Bernhard Preim | Generation and Visual Exploration of Medical Flow Data: Survey, Research Trends, and Future Challenges | Computer Graphics Forum, 38(1), pp. 87-125, 2019 |
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Daniel Baum, James C. Weaver, Igor Zlotnikov, David Knötel, Lara Tomholt, Mason N. Dean | High-Throughput Segmentation of Tiled Biological Structures using Random-Walk Distance Transforms | Integrative And Comparative Biology, 2019 (preprint available as ZIB-Report 19-33) |
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Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria Peschutter, Heike Siebert, Annalisa Marsico | Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis | BMC Bioinformatics, 20(1471-2105), 2019 |
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Norbert Lindow, Daniel Baum, Morgan Leborgne, Hans-Christian Hege | Interactive Visualization of RNA and DNA Structures | IEEE Transactions on Visualization and Computer Graphics, 25(1), pp. 967-976, 2019 (preprint available as ZIB-Report 18-33) |
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Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte | Learning chemical reaction networks from trajectory data | SIAM Journal on Applied Dynamical Systems (SIADS), 18(4), pp. 2000-2046, 2019 |
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arXiv DOI |
Mario Neumann, Olaf Hellwich, Stefan Zachow | Localization and Classification of Teeth in Cone Beam CT using Convolutional Neural Networks | Proc. of the 18th annual conference on Computer- and Robot-assisted Surgery (CURAC), pp. 182-188, 2019, ISBN: 978-3-00-063717-9 |
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Mario Neumann | Localization and Classification of Teeth in Cone Beam Computed Tomography using 2D CNNs | Master's thesis, Technische Universität Berlin, Stefan Zachow (Advisor), 2019 |
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Leonid Goubergrits, Florian Hellmeier, Jan Joris Bruening, Andreas Spuler, Hans-Christian Hege, Samuel Voss, Gábor Janiga, Sylvia Saalfeld, Oliver Beuing, Philipp Berg | Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH): Uncertainty Quantification of Geometric Rupture Risk Parameters | BioMedical Engineering OnLine, 18(35), 2019 |
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John Nyakatura, Roxane Baumgarten, Daniel Baum, Heiko Stark, Dionisios Youlatos | Muscle internal structure revealed by contrast-enhanced μCT and fibre recognition: The hindlimb extensors of an arboreal and a fossorial squirrel | Mammalian Biology, Vol.99, pp. 71-80, 2019 |
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Tony Lelièvre, Wei Zhang | Pathwise estimates for effective dynamics: the case of nonlinear vectorial reaction coordinates | Multiscale Modeling and Simulation, pp. 1019-1051, 2019 |
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arXiv DOI |
Olaf Paetsch | Possibilities and Limitations of Automatic Feature Extraction shown by the Example of Crack Detection in 3D-CT Images of Concrete Specimen | iCT 2019, iCT 2019 Conference Proceedings, 2019 |
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Olaf Paetsch | Possibilities and Limitations of Automatic Feature Extraction shown by the Example of Crack Detection in 3D-CT Images of Concrete Specimen | iCT 2019, iCT 2019 Conference Proceedings, 2019 (in press) |
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Bahareh Banyassady, Man-Kwun Chiu, Matias Korman, Wolfgang Mulzer, André van Renssen, Marcel Roeloffzen, Paul Seiferth, Yannik Stein, Birgit Vogtenhuber, Max Willert | Routing in polygonal domains | Computational Geometry, Theory and Applications, Vol.87, 2019 |
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Norbert Lindow, Florian Brünig, Vincent J. Dercksen, Gunar Fabig, Robert Kiewisz, Stefanie Redemann, Thomas Müller-Reichert, Steffen Prohaska | Semi-automatic Stitching of Serial Section Image Stacks with Filamentous Structures | ZIB-Report 19-30 |
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Mehmet Neset Ozel, Abhishek Kulkarni, Amr Hasan, Josephine Brummer, Marian Moldenhauer, Ilsa-Maria Daumann, Heike Wolfenberg, Vincent J. Dercksen, Ferdi Ridvan Kiral, Martin Weiser, Steffen Prohaska, Max von Kleist, Peter Robin Hiesinger | Serial synapse formation through filopodial competition for synaptic seeding factors | Developmental Cell, 50(4), pp. 447-461, 2019 (preprint available as ZIB-Report 19-45) |
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Felix Ambellan, Hans Lamecker, Christoph von Tycowicz, Stefan Zachow | Statistical Shape Models - Understanding and Mastering Variation in Anatomy | Biomedical Visualisation, Paul M. Rea (Ed.), Springer Nature Switzerland AG, 1, pp. 67-84, 2019, ISBN: 978-3-030-19384-3, ISBN: 978-3-030-19385-0 (preprint available as ZIB-Report 19-13) |
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Martin Krämer, Marta Maggioni, Nicholas Brisson, Stefan Zachow, Ulf Teichgräber, Georg Duda, Jürgen Reichenbach | T1 and T2* mapping of the human quadriceps and patellar tendons using ultra-short echo-time (UTE) imaging and bivariate relaxation parameter-based volumetric visualization | Magnetic Resonance Imaging, 63(11), pp. 29-36, 2019 |
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Thomas Hildebrandt, Jan Joris Bruening, Nora Laura Schmidt, Hans Lamecker, Werner Heppt, Stefan Zachow, Leonid Goubergrits | The Healthy Nasal Cavity - Characteristics of Morphology and Related Airflow Based on a Statistical Shape Model Viewed from a Surgeon’s Perspective | Facial Plastic Surgery, 35(1), pp. 9-13, 2019 |
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Bernhard Fröhler, Lucas da Cunha Melo, Johannes Weissenböck, Johann Kastner, Torsten Möller, Hans-Christian Hege, Eduard M. Gröller, Jonathan Sanctorum, Jan De Beenhouwer, Jan Sijbers, Christoph Heinzl | Tools for the analysis of datasets from X-ray computed tomography based on Talbot-Lau grating interferometry | Proceedings of iCT 2019, (9th Conference on Industrial Computed Tomography, Padova, Italy – iCT 2019, February 13-15, 2019), 2019 |
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2018 |
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Esfandiar Nava-Yazdani, Hans-Christian Hege, Christoph von Tycowicz, T. J. Sullivan | A Shape Trajectories Approach to Longitudinal Statistical Analysis | ZIB-Report 18-42 |
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Liviu Coconu, Brygg Ullmer, Philip Paar, Jing Liu, Miriam Konkel, Hans-Christian Hege | A smartphone-based tangible interaction approach for landscape visualization. | PerDis ’18 Proceedings of the 7th ACM International Symposium on Pervasive Displays, Munich, Germany, June 6-8, 2018, p. no. 23, 2018 |
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Stefanie Redemann, Ina Lantzsch, Norbert Lindow, Steffen Prohaska, Martin Srayko, Thomas Müller-Reichert | A switch in microtubule orientation during C. elegans meiosis | Current Biology, 2018 (preprint available as ZIB-Report 18-34) |
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Jürgen Titschack, Daniel Baum, Kei Matsuyama, Karin Boos, Claudia Färber, Wolf-Achim Kahl, Karsten Ehrig, Dietmar Meinel, Carmen Soriano, Stuart R. Stock | Ambient occlusion – a powerful algorithm to segment shell and skeletal intrapores in computed tomography data | Computers and Geosciences, Vol.115, pp. 75-87, 2018 (preprint available as ZIB-Report 18-14) |
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Brygg Ullmer, Philip Paar, Liviu Coconu, Jing Liu, Miriam Konkel, Hans-Christian Hege | An 1834 mediterranean garden in Berlin – engaged from 2004, 2018, 2032, and 2202 | PerDis ’18 – 7th ACM International Symposium on Pervasive Displays, Munich, Germany, June 6-8, 2018, p. no. 12, 2018 |
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Christoph von Tycowicz, Felix Ambellan, Anirban Mukhopadhyay, Stefan Zachow | An Efficient Riemannian Statistical Shape Model using Differential Coordinates | Medical Image Analysis, 43(1), pp. 1-9, 2018 (preprint available as ZIB-Report 16-69) |
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Maren Alchikh, Tim Conrad, Christian Hoppe, Xiaolin Ma, Eeva K. Broberg, P. Penttinen, J. Reiche, Barbara Biere, Brunhilde Schweiger, Barbara Rath | Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care. Clinical Microbiology and Infection | Clinical Microbiology and Infection, pp. 1-1, 2018 (accepted for publication) |
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F. Kork, Tim Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, Felix Balzer | Associations of postoperative mortality with the time of day, week and year | Anaesthesia, 73(6), pp. 711-718, 2018 |
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F. Kork, Claudia Spies, Tim Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, Felix Balzer | Associations of postoperative mortality with the time of day, week and year | Anaesthesia, 2018 (accepted for publication) |
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Norbert Lindow, Daniel Baum, Hans-Christian Hege | Atomic Accessibility Radii for Molecular Dynamics Analysis | Workshop on Molecular Graphics and Visual Analysis of Molecular Data, 2018, ISBN: 978-3-03868-061-1 (preprint available as ZIB-Report 18-18) |
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Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow | Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative | Medical Imaging with Deep Learning, 2018 |
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Xiaolin Ma, Tim Conrad, Maren Alchikh, J. Reiche, Brunhilde Schweiger, Barbara Rath | Can we distinguish respiratory viral infections based on clinical features? A prospective pediatric cohort compared to systematic literature review | Medical Virology, 28(5), pp. 1-12, 2018 (accepted for publication) |
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Mohsen Akbari Shandiz, Paul Boulos, Stefan Sævarsson, Heiko Ramm, Chun Kit Fu, Stephen Miller, Stefan Zachow, Carolyn Anglin | Changes in Knee Shape and Geometry Resulting from Total Knee Arthroplasty | Journal of Engineering in Medicine, 232(1), pp. 67-79, 2018 |
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Patrick Obermeier, A. Heim, Barbara Biere, E. Hage, Maren Alchikh, Tim Conrad, Brunhilde Schweiger, Barbara Rath | Clinical characteristics and disease severity associated with adenovirus infections in infants and children - discovery of a novel adenovirus, HAdV-D80 | Clinical Infectious Diseases, 2018 (under review) |
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Anne Dennstedt, Fabrice Gaslain, Marion Bartsch, Vincent Guipont, Vincent Maurel | Crack Morphology in a Columnar Thermal Barrier Coating System | 2018 |
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Tobias Kramer, Matthias Noack, Daniel Baum, Hans-Christian Hege, Eric J. Heller | Dust and gas emission from cometary nuclei: the case of comet 67P/Churyumov-Gerasimenko | Advances in Physics: X, 3(1), p. 1404436, 2018 (preprint available as ZIB-Report 17-78) |
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Forough Marzban, Tim Conrad, Pouria Marban, Sahar Sodoudi | Estimation of the Near-Surface Air Temperature during the Day and Nighttime from MODIS in Berlin, Germany | International Journal of Advanced Remote Sensing and GIS, 7(1), pp. 2478-2517, 2018 |
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Merlind Schotte | Finite-Elemente-Techniken zur mechanischen Stabilitätsanalyse der Hyomandibula von Rochen | Master's thesis, Beuth Hochschule für Technik Berlin, Daniel Baum, Ute Wagner (Advisors), 2018 |
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David Knötel, Carola Becker, Gerhard Scholtz, Daniel Baum | Global and Local Mesh Morphing for Complex Biological Objects from microCT Data | Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), pp. 179-183, 2018 (preprint available as ZIB-Report 18-53) |
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Sabrina Dill | Joint Feature Learning and Classification - Deep Learning for Surgical Phase Detection | Master's thesis, Technische Universität Berlin, Manish Sahu (Advisor), 2018 |
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Sabrina Patricia Dill | Joint Feature Learning and Classification - Deep Learning for Surgical Phase Detection | Master's thesis, Technische Universität Berlin, Manish Sahu, Stefan Zachow (Advisors), 2018 |
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Alexander Tack, Anirban Mukhopadhyay, Stefan Zachow | Knee Menisci Segmentation using Convolutional Neural Networks: Data from the Osteoarthritis Initiative | Osteoarthritis and Cartilage, 26(5), pp. 680-688, 2018 (preprint available as ZIB-Report 18-15) |
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Eugene Jennifer Jin, Ferdi Ridvan Kiral, Mehmet Neset Ozel, Lara Sophie Burchardt, Marc Osterland, Daniel Epstein, Heike Wolfenberg, Steffen Prohaska, Peter Robin Hiesinger | Live Observation of Two Parallel Membrane Degradation Pathways at Axon Terminals | Current Biology, 28(7), pp. 1027-1038.e4, 2018 |
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Feda Seblany, Ulrike Homberg, Eric Vincens, Paul Winkler, Karl Josef Witt | Merging criteria for defining pores and constrictions in numerical packing of spheres | Granular Matter, 20(37), 2018 (preprint available as ZIB-Report 18-25) |
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Olaf Paetsch | Möglichkeiten und Grenzen automatischer Merkmalserkennung am Beispiel von Risserkennungen in 3D-CT-Aufnahmen von Betonproben | DGZfP 2018, 2018 (in press) |
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Wei Zhang, Carsten Hartmann, Max von Kleist | Optimal control of Markov jump processes: Asymptotic analysis, algorithms and applications to the modeling of chemical reaction systems | Communications in Mathematical Sciences, pp. 293-331, 2018 |
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Norbert Lindow, Stefanie Redemann, Florian Brünig, Gunar Fabig, Thomas Müller-Reichert, Steffen Prohaska | Quantification of three-dimensional spindle architecture | Methods in Cell Biology Part B, Academic Press, pp. 45-64, 2018 (preprint available as ZIB-Report 18-07) |
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Victor Mireles, Tim Conrad | Reusable building blocks in biological systems | Journal of the Royal Society Interface, 15(149), pp. 1-10, 2018 (accepted for publication) |
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Carl Martin Grewe, Gabriel le Roux, Sven-Kristofer Pilz, Stefan Zachow | Spotting the Details: The Various Facets of Facial Expressions | IEEE International Conference on Automatic Face and Gesture Recognition, pp. 286-293, 2018 (preprint available as ZIB-Report 18-06) |
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Max von Kleist, Christof Schütte, Wei Zhang | Statistical analysis of the first passage path ensemble of jump processes | Journal of Statistical Physics, Vol.170, pp. 809-843, 2018 |
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Felix Herter | Supervised Classification of Microtubule Ends: An Evaluation of Machine Learning Approaches | Master's thesis, Freie Universität Berlin, Daniel Baum, Norbert Lindow (Advisors), 2018 |
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Leonardo Agudo Jácome, Hans-Christian Hege, Olaf Paetsch, Kai Pöthkow | Three-dimensional reconstruction and quantification of dislocation substructures from transmission electron microscopy stereo pairs | Ultramicroscopy, Vol.195, pp. 157-170, 2018 (preprint available as ZIB-Report 18-50) |
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Rene Hoffmann, Robert Lemanis, Lena Wulff, Stefan Zachow, Alexander Lukeneder, Christian Klug, Helmut Keupp | Traumatic events in the life of the deep-sea cephalopod mollusc, the coleoid Spirula spirula | ScienceDirect: Deep Sea Research Part I - Oceanographic Research, 142(12), pp. 127-144, 2018 |
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Martin Krämer, Marta Maggioni, Christoph von Tycowicz, Nick Brisson, Stefan Zachow, Georg Duda, Jürgen Reichenbach | Ultra-short echo-time (UTE) imaging of the knee with curved surface reconstruction-based extraction of the patellar tendon | ISMRM (International Society for Magnetic Resonance in Medicine), 26th Annual Meeting 2018, Paris, France, 2018 |
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Martin Weiser, Bodo Erdmann, Sebastian Schenkl, Holger Muggenthaler, Michael Hubig, Gita Mall, Stefan Zachow | Uncertainty in Temperature-Based Determination of Time of Death | Heat and Mass Transfer, 54(9), pp. 2815-2826, 2018 (preprint available as ZIB-Report 17-18) |
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G. Hettich, R. A. Schierjott, C. Schilling, A. Maas, Heiko Ramm, Matthias Bindernagel, Hans Lamecker, T. M. Grupp | Validation of a Statistical Shape Model for Acetabular Bone Defect Analysis | ISTA 2018 London Abstract Book, 2018 (accepted for publication) |
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2017 |
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Ulrike Homberg, Daniel Baum, Steffen Prohaska, Jens Günster, Stefanie Krauß-Schüler | Adapting trabecular structures for 3D printing: an image processing approach based on µCT data | Biomedical Physics & Engineering Express, 3(3), 2017 (preprint available as ZIB-Report 17-26) |
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Marian Moldenhauer, Martin Weiser, Stefan Zachow | Adaptive Algorithms for Optimal Hip Implant Positioning | PAMM, 17(1), pp. 203-204, 2017 |
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Manish Sahu, Anirban Mukhopadhyay, Angelika Szengel, Stefan Zachow | Addressing multi-label imbalance problem of Surgical Tool Detection using CNN | International Journal of Computer Assisted Radiology and Surgery, 12(6), pp. 1013-1020, 2017 |
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Daisuke Sakurai, Hans-Christian Hege, Alexander Kuhn, Henning Rust, Bastian Kern, Tom-Lukas Breitkopf | An Application-Oriented Framework for Feature Tracking in Atmospheric Sciences | Proceedings of 2017 IEEE 7th Symposium on Large Data Analysis and Visualization (LDAV), pp. 96-97, 2017 (preprint available as ZIB-Report 17-50) |
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David Knötel, Ronald Seidel, Steffen Prohaska, Mason N. Dean, Daniel Baum | Automated Segmentation of Complex Patterns in Biological Tissues: Lessons from Stingray Tessellated Cartilage | PLOS ONE, 2017 (preprint available as ZIB-Report 17-62) |
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David Knötel, Ronald Seidel, Paul Zaslansky, Steffen Prohaska, Mason N. Dean, Daniel Baum | Automated Segmentation of Complex Patterns in Biological Tissues: Lessons from Stingray Tessellated Cartilage (Supplementary Material) | 2017 |
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Sebastian Schenkl, Holger Muggenthaler, Michael Hubig, Bodo Erdmann, Martin Weiser, Stefan Zachow, Andreas Heinrich, Felix Victor Güttler, Ulf Teichgräber, Gita Mall | Automatic CT-based finite element model generation for temperature-based death time estimation: feasibility study and sensitivity analysis | International Journal of Legal Medicine, 131(3), pp. 699-712, 2017 |
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Gutha Vaishnavi Reddy | Automatic Classification of 3D MRI data using Deep Convolutional Neural Networks | Master's thesis, Otto-von-Guericke-Universität Magdeburg, Stefan Zachow, Alexander Tack (Advisors), 2017 |
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Fahrnaz Jayrannejad, Tim Conrad | Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining | Springer Lecture Notes in Artificial Intelligence, 2017 (in press) |
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Fahrnaz Jayrannejad, Tim Conrad | Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining | Springer Lecture Notes in Artificial Intelligence, p. studi, 2017 (accepted for publication) |
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Anirban Mukhopadhyay, Suchendra Bhandarkar | Biharmonic Density Estimate - a scale space descriptor for 3D deformable surfaces | Pattern Analysis and Application, pp. 1-13, 2017 |
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Chavdar Papazov, Hans-Christian Hege | Blue-noise Optimized Point Sets Based on Procrustes Analysis | SIGGRAPH Asia 2017 Technical Briefs, pp. 20:1-20:4, 2017 (preprint available as ZIB-Report 17-55) |
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Stefanie Redemann, Johannes Baumgart, Norbert Lindow, Michael Shelley, Ehssan Nazockdast, Andrea Kratz, Steffen Prohaska, Jan Brugués, Sebastian Fürthauer, Thomas Müller-Reichert | C. elegans chromosomes connect to centrosomes by anchoring into the spindle network | Nature Communications, 8(15288), 2017 |
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Amal Aboulhassan, Ronell Sicat, Daniel Baum, Olga Wodo, Markus Hadwiger | Comparative Visual Analysis of Structure-Performance Relations in Complex Bulk-Heterojunction Morphologies | Computer Graphics Forum, 36(3), pp. 329-339, 2017 (preprint available as ZIB-Report 17-16) |
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Robert Joachimsky, Felix Ambellan, Stefan Zachow | Computerassistierte Auswahl und Platzierung von interpositionalen Spacern zur Behandlung früher Gonarthrose | Proceedings of the Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), pp. 106-111, Vol.16, 2017 (preprint available as ZIB-Report 17-72) |
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Gabriel le Roux | Development and Evaluation of Algorithms for 3D Facial Motion Estimation from Stereo Videos | Master's thesis, Technische Universität Berlin, Carl Martin Grewe (Advisor), 2017 |
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Carl Martin Grewe, Lisa Schreiber | Digital Image Archive. The Archiving and Coding of Emotions | +ultra. Knowledge & Gestaltung, pp. 281-286, Nikola Doll, Horst Bredekamp, Wolfgang Schäffner (Eds.), Seemann Henschel, 2017 |
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L. Seeber, Tim Conrad, Christian Hoppe, Patrick Obermeier, X. Chen, K. Karsch, S. Muehlhans, Franziska Tief, Sindy Boettcher, S. Diedrich, Brunhilde Schweiger, Barbara Rath | Educating parents about the vaccination status of their children: A user-centered mobile application | Preventive Medicine Reports, Vol.5, pp. 241-250, 2017 (accepted for publication) |
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Borong Shao, Carlo Vittorio Cannistraci, Tim Conrad | Epithelial Mesenchymal Transition Network-Based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data | Genomics and Computational Biology, 3(3), p. e57, 2017 |
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Martin Zänker | Estimating Human Face Reflectance from Single-Shot Multiview Data | Master's thesis, Freie Universität Berlin, Carl Martin Grewe (Advisor), 2017 |
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Felix Ambellan, Alexander Tack, Dave Wilson, Carolyn Anglin, Hans Lamecker, Stefan Zachow | Evaluating two methods for Geometry Reconstruction from Sparse Surgical Navigation Data | Proceedings of the Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), pp. 24-30, Vol.16, 2017 (preprint available as ZIB-Report 17-71) |
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Jens Buchmann, Bernhard Kaplan, Steffen Prohaska, Jan Laufer | Experimental validation of a Monte-Carlo-based inversion scheme for 3D quantitative photoacoustic tomography | Proc. of SPIE, Photons Plus Ultrasound: Imaging and Sensing, pp. 1006416-1006416-8, Vol.10064, Proc. of SPIE, 2017 |
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Carl Martin Grewe, Stefan Zachow | Face to Face-Interface | +ultra. Knowledge & Gestaltung, pp. 320-321, Nikola Doll, Horst Bredekamp, Wolfgang Schäffner (Eds.), Seemann Henschel, 2017 |
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Barbara Rath, Tim Conrad, Puja Myles, Maren Alchikh, Xiaolin Ma, Christian Hoppe, Franziska Tief, Xi Chen, Patrick Obermeier, Bron Kisler, Brunhilde Schweiger | Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials | Expert Review of Anti-infective Therapy, 15(6), pp. 545-568, 2017 |
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René Hoffmann, Robert Lemanis, Janina Falkenberg, Steffen Schneider, Hendrik Wesendonk, Stefan Zachow | Integrating 2D and 3D shell morphology to disentangle the palaeobiology of ammonoids: A virtual approach | Palaeontology, 61(1), pp. 89-104, 2017 |
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Rieke Heinze, Anurag Dipankar, Cintia Carbajal Henken, Christopher Moseley, Odran Sourdeval, Silke Trömel, Xinxin Xie, Panos Adamidis, Felix Ament, Holger Baars, Christian Barthlott, Andreas Behrendt, Ulrich Blahak, Sebastian Bley, Slavko Brdar, Matthias Brueck, Susanne Crewell, Hartwig Deneke, Paolo Di Girolamo, Raquel Evaristo, Jürgen Fischer, Christopher Frank, Petra Friederichs, Tobias Göcke, Ksenia Gorges, Luke Hande, Moritz Hanke, Akio Hansen, Hans-Christian Hege, Corinna Hose, Thomas Jahns, Norbert Kalthoff, Daniel Klocke, Stefan Kneifel, Peter Knippertz, Alexander Kuhn, Thriza van Laar, Andreas Macke, Vera Maurer, Bernhard Mayer, Catrin I. Meyer, Shravan K. Muppa, Roeland A. J. Neggers, Emiliano Orlandi, Florian Pantillon, Bernhard Pospichal, Niklas Röber, Leonhard Scheck, Axel Seifert, Patric Seifert, Fabian Senf, Pavan Siligam, Clemens Simmer, Sandra Steinke, Bjorn Stevens, Kathrin Wapler, Michael Weniger, Volker Wulfmeyer, Günther Zängl, Dan Zhang, Johannes Quaas | Large-eddy simulations over Germany using ICON: a comprehensive evaluation | Quarterly Journal of the Royal Meteorological Society, 143(702), pp. 69-100, 2017 |
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Feda Seblany, Ulrike Homberg, Eric Vincens, Paul Winkler, Karl Josef Witt | Merging criteria for the definition of a local pore and the CSD computation of granular materials | Proceedings of the 25th meeting of the Working Group on Internal Erosion in embankment dams and their foundations, pp. 150-159, 2017, ISBN: 978-90-827468-1-5 | 978-90-827468-0-8 (preprint available as ZIB-Report 18-09) |
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Bernhard Kaplan, Jens Buchmann, Steffen Prohaska, Jan Laufer | Monte-Carlo-based inversion scheme for 3D quantitative photoacoustic tomography | Proc. of SPIE, Photons Plus Ultrasound: Imaging and Sensing 2017, pp. 100645J-100645J-13, Vol.10064, Proc. of SPIE, 2017 (preprint available as ZIB-Report 17-04) |
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Jan Brüning, Leonid Goubergrits, Werner Heppt, Stefan Zachow, Thomas Hildebrandt | Numerical Analysis of Nasal Breathing - A Pilot Study | Facial Plastic Surgery, 33(4), pp. 388-395, 2017 |
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Alexander Kuhn, Hans-Christian Hege | Object-based visualization and evaluation of cloud-resolving simulations | Book of Abstracts, SCCS 2017 – Scaling Cascades in Complex Systems, Mar 27-29, 2017, Berlin, Germany, 2017 |
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Juliane Lube, Natasha Flack, Sebastian Cotofana, Orkun Özkurtul, Stephanie Woodley, Stefan Zachow, Niels Hammer | Pelvic and lower extremity physiological cross-sectional areas: An MRI study of the living young and comparison to published research literature | Surgical and Radiologic Anatomy, 39(8), pp. 849-857, 2017 |
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Ulrich-Peter Rohr, Pia Herrmann, Katharina Ilm, Hai Zhang, Sabine Lohmann, Astrid Reiser, Andrea Muranyi, Janice Smith, Susen Burock, Marc Osterland, Katherine Leith, Shalini Singh, Patrick Brunhoeber, Rebecca Bowermaster, Jeanne Tie, Michael Christie, Hui-Li Wong, Paul Waring, Kandavel Shanmugam, Peter Gibbs, Ulrike Stein | Prognostic value of MACC1 and proficient mismatch repair status for recurrence risk prediction in stage II colon cancer patients: the BIOGRID studies | Annals of Oncology, 28(8), pp. 1869-1875, 2017 (preprint available as ZIB-Report 17-28) |
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Tobias Günther, Alexander Kuhn, Hans-Christian Hege, Markus Gross, Holger Theisel | Progressive Monte Carlo rendering of atmospheric flow features across scales | Physical Review Fluids, Vol.2, pp. 09050-1-09050-3, 2017 |
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Daniel Baum, Norbert Lindow, Hans-Christian Hege, Verena Lepper, Tzulia Siopi, Frank Kutz, Kristin Mahlow, Heinz-Eberhard Mahnke | Revealing hidden text in rolled and folded papyri | Applied Physics A, 123(3), p. 171, 2017 (preprint available as ZIB-Report 17-02) |
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Andreas Benn, Christian Hiepen, Marc Osterland, Christof Schütte, An Zwijsen, Petra Knaus | Role of bone morphogenetic proteins in sprouting angiogenesis: differential BMP receptor-dependent signaling pathways balance stalk vs. tip cell competence | FASEB Journal, 31(11), pp. 4720-4733, 2017 |
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Florian Bernard, Luis Salamanca, Johan Thunberg, Alexander Tack, Dennis Jentsch, Hans Lamecker, Stefan Zachow, Frank Hertel, Jorge Goncalves, Peter Gemmar | Shape-aware Surface Reconstruction from Sparse 3D Point-Clouds | Medical Image Analysis, Vol.38, pp. 77-89, 2017 |
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Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Benedikt Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte | Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data | BMC Bioinfomatics, 18(160), 2017 |
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Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Jan Vybiral, Gitta Kutyniok, Christof Schütte | Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data | BMC Bioinformatics, 18(160), pp. 1-20, 2017 |
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Avan Suinesiaputra, Pierre Albin, Xenia Alba, Martino Alessandrini, Jack Allen, Wenjia Bai, Serkan Cimen, Peter Claes, Brett Cowan, Jan D'hooge, Nicolas Duchateau, Jan Ehrhardt, Alejandro Frangi, Ali Gooya, Vicente Grau, Karim Lekadir, Allen Lu, Anirban Mukhopadhyay, Ilkay Oksuz, Nripesh Parajuli, Xavier Pennec, Marco Pereanez, Catarina Pinto, Paolo Piras, Marc-Michael Rohe, Daniel Rueckert, Dennis Saring, Maxime Sermesant, Kaleem Siddiqi, Mahdi Tabassian, Lusiano Teresi, Sotirios Tsaftaris, Matthias Wilms, Alistair Young, Xingyu Zhang, Pau Medrano-Gracia | Statistical shape modeling of the left ventricle: myocardial infarct classification challenge | IEEE Journal of Biomedical and Health Informatics, 2017 |
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Yulia Zhukova, Christian Hiepen, Petra Knaus, Marc Osterland, Steffen Prohaska, John W. C. Dunlop, Peter Fratzl, Ekaterina V. Skorb | The role of titanium surface nanotopography on preosteoblast morphology, adhesion and migration | Advanced Healthcare Materials, 2017 (preprint available as ZIB-Report 17-06) |
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Alexander Kuhn, Wito Engelke, Markus Flatken, Hans-Christian Hege, Ingrid Hotz | Topology-based Analysis for Multimodal Atmospheric Data of Volcano Eruptions | Topological Methods in Data Analysis and Visualization IV, pp. 35-50, 2017 (preprint available as ZIB-Report 16-03) |
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Ronald Seidel, Michael Blumer, Paul Zaslansky, David Knötel, Daniel R. Huber, James C. Weaver, Peter Fratzl, Sidney Omelon, Luca Bertinetti, Mason N. Dean | Ultrastructural, material and crystallographic description of endophytic masses – a possible damage response in shark and ray tessellated calcified cartilage | Journal of Structural Biology, 2017 |
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David Wilson, Carolyn Anglin, Felix Ambellan, Carl Martin Grewe, Alexander Tack, Hans Lamecker, Michael Dunbar, Stefan Zachow | Validation of three-dimensional models of the distal femur created from surgical navigation point cloud data for intraoperative and postoperative analysis of total knee arthroplasty | International Journal of Computer Assisted Radiology and Surgery, 12(12), pp. 2097-2105, 2017 |
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Liviu Coconu, Hans-Christian Hege | devEyes: Tangible Devices on Augmented Passive Surfaces | TEI '17 Proceedings of the Eleventh International Conference on Tangible, Embedded, and Embodied Interaction, Yokohama, Japan, March 20 - 23, 2017, pp. 409-411, 2017 |
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Leonardo Agudo Jácome, Hans-Christian Hege, Olaf Paetsch, Kai Pöthkow | 3D Reconstruction, Visualization and Quantification of Dislocations from Transmission Electron Microscopy Stereo-Pairs | Microscopy and Microanalysis 2016, July 24-28 Columbus, Ohio, 2016 |
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Jens Kasten, Jan Reininghaus, Ingrid Hotz, Hans-Christian Hege, Bernd Noack, Guillaume Daviller, Marek Morzyński | Acceleration feature points of unsteady shear flows | Archives of Mechanics, 68(1), pp. 55-80, 2016 (preprint available as ZIB-Report 15-65) |
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Tim Conrad, Xintian You | Acfs: accurate circRNA identification and quantification from NGS data | Nature Scientific Reports, Vol.6, 2016 |
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Franziska Tief, Christian Hoppe, L. Seeber, Patrick Obermeier, X. Chen, K. Karsch, S. Muehlhans, E. Adamou, Tim Conrad, Brunhilde Schweiger, T. Adam, Barbara Rath | An inception cohort study assessing the role of bacterial co-infections in children with influenza and ILI and a clinical decision model for stringent antibiotic use | Antiviral Therapy, Vol.21, pp. 413-424, 2016 |
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Mason N. Dean, Ahmed Hosny, Ronald Seidel, Daniel Baum | Biological strategies for fatique and wear avoidance: lessons from stingray skeletons and teeth | Poster, Tomography for Scientific Advancement symposium (ToScA), 2016 |
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Daniel Baum, Jürgen Titschack | Cavity and Pore Segmentation in 3D Images with Ambient Occlusion | EuroVis 2016 - Short Papers, 2016 (preprint available as ZIB-Report 16-17) |
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Robert Lemanis, Stefan Zachow, René Hoffmann | Comparative cephalopod shell strength and the role of septum morphology on stress distribution | PeerJ, Vol.4, p. e2434, 2016 |
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Victor Mireles, Tim Conrad | Decomposing biological systems into reusable modules reveals characteristic module size distributions | 2016 (under review) |
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Anirban Mukhopadhyay, Fatih Porikli, Suchendra Bhandarkar | Detection and Characterization of Intrinsic Symmetry of 3D Shapes | Proceedings of IEEE International Conference on Pattern Recognition, 2016 |
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Carl Martin Grewe, Lisa Schreiber | Digitale Bildarchive. Archivierung und Codierung der Gefühle | +ultra gestaltung schafft wissen, Seemann Henschel, pp. 285-290, 2016, ISBN: 978-3-86502-378-0 |
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Patrick Obermeier, S. Muehlhans, Christian Hoppe, K. Karsch, Franziska Tief, L. Seeber, X. Chen, Tim Conrad, Sindy Boettcher, S. Diedrich, Barbara Rath | Enabling Precision Medicine With Digital Case Classification at the Point-of-Care | EBioMedicine, Vol.4, pp. 191-196, 2016 |
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Borong Shao, Tim Conrad | Epithelial Mesenchymal Transition Regulatory Network-based Feature Selection in Lung Cancer Prognosis Prediction | Lecture Notes in Computer Science (LNCS), pp. 1235-146, Vol.9656, 2016 |
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Iliusi Vega, Christof Schütte, Tim Conrad | Finding metastable states in real-world time series with recurrence networks | Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016 |
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Carl Martin Grewe, Stefan Zachow | Fully Automated and Highly Accurate Dense Correspondence for Facial Surfaces | Computer Vision – ECCV 2016 Workshops, pp. 552-568, Vol.9914, 2016 |
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Christopher Brandt, Christoph von Tycowicz, Klaus Hildebrandt | Geometric Flows of Curves in Shape Space for Processing Motion of Deformable Objects | Computer Graphics Forum, 35(2), 2016 (preprint available as ZIB-Report 16-29) |
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Konstantin Krenz | How likely is it that one’s standing on a ridge? Probabilistic Ridges in Gaussian Random Fields | Bachelor's thesis, Humboldt-Universität zu Berlin, Hans-Christian Hege (Advisor), 2016 |
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Robert Zahn, Sarah Grotjohann, Heiko Ramm, Stefan Zachow, Matthias Pumberger, Michael Putzier, Carsten Perka, Stephan Tohtz | Influence of pelvic tilt on functional acetabular orientation | Technology and Health Care, 25(3), pp. 557-565, 2016 |
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Christian Hoppe, Patrick Obermeier, S. Mehlhans, Maren Alchikh, L. Seeber, Franziska Tief, K. Karsch, X. Chen, Sindy Boettcher, S. Diedrich, Tim Conrad | Innovative Digital Tools and Surveillance Systems for the Timely Detection of Adverse Events at the Point of Care: A Proof-of-Concept Study | Drug Safety, 39(10), pp. 977-988, 2016 |
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Manish Sahu | Instrument Gesture Recognition and Tracking for Effective Control of Laparoscopic Tracking and Guidance Device | Master's thesis, Otto-von-Guericke-Universität Magdeburg, Georg Rose (Advisor), 2016 |
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Manish Sahu, Daniil Moerman, Philip Mewes, Peter Mountney, Georg Rose | Instrument State Recognition and Tracking for Effective Control of Robotized Laparoscopic Systems | International Journal of Mechanical Engineering and Robotics Research, 5(1), pp. 33-38, 2016 |
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Anirban Mukhopadhyay, Arun Kumar, Suchendra Bhandarkar | Joint Geometric Graph Embedding for Partial Shape Matching in Images | IEEE Winter Conference on Applications of Computer Vision, pp. 1-9, IEEE, IEEE Winter Conference on Applications of Computer Vision (WACV), 2016 |
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James C Knight, Philip J Tully, Bernhard Kaplan, Anders Lansner, Steve Furber | Large-scale simulations of plastic neural networks on neuromorphic hardware | Frontiers in Neuroanatomy, Vol.10:37, 2016 |
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Claudia Färber, Jürgen Titschack, Christine H. L. Schönberg, Karsten Ehrig, Karin Boos, Daniel Baum, Bernd Illerhaus, Ulla Asgaard, Richard G. Bromley, André Freiwald, Max Wisshak | Long-term macrobioerosion in the Mediterranean Sea assessed by micro-computed tomography | Biogeosciences, 13(11), pp. 3461-3474, 2016 |
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Tobias Günther, Alexander Kuhn, Hans-Christian Hege, Holger Theisel | MCFTLE: Monte Carlo Rendering of Finite-Time Lyapunov Exponent Fields | Computer Graphics Forum, 35(3), pp. 381-390, 2016 (preprint available as ZIB-Report 16-21) |
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Jürgen Titschack, Hiske G. Fink, Daniel Baum, Claudia Wienberg, Dierk Hebbeln, André Freiwald | Mediterranean cold-water corals - an important regional carbonate factory? | The Depositional Record, 2(1), pp. 74-96, 2016 |
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Jason Dunlop, Dmitry Apanaskevich, Jens Lehmann, Rene Hoffmann, Florian Fusseis, Moritz Ehlke, Stefan Zachow, Xianghui Xiao | Microtomography of the Baltic amber tick Ixodes succineus reveals affinities with the modern Asian disease vector Ixodes ovatus | BMC Evolutionary Biology, 16(1), 2016 |
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Sven-Kristofer Pilz | Multi-View Reconstruction based on Mesh Photo-Consistency Optimization | Master's thesis, Freie Universität Berlin, Carl Martin Grewe, Stefan Zachow (Advisors), 2016 |
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Marta Costa, James D. Manton, Aaron D. Ostrovsky, Steffen Prohaska, Gregory S.X.E. Jefferis | NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases | Neuron, 91(2), pp. 293-311, 2016 (preprint available as ZIB-Report 16-34) |
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Gunter Hermann, Vincent Pohl, Jean Christophe Tremblay, Beate Paulus, Hans-Christian Hege, Axel Schild | ORBKIT – A modular Python toolbox for cross-platform post-processing of quantum chemical wavefunction data | Journal of Computational Chemistry, 37(16), pp. 1511-1520, 2016 |
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Tobias Günther, Alexander Kuhn, Hans-Christian Hege, Markus Gross, Holger Theisel | Progressive Monte-Carlo Rendering of Atmospheric Flow Features Across Scales | 69th Annual Meeting of the APS Division of Fluid Dynamics, Gallery of Fluid Motion, Nov 20-22, 2016, Portland, OR, USA., 2016 (epub ahead of print) |
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Simón Auch | Realtime Action Unit detection | Bachelor's thesis, Freie Universität Berlin, Carl Martin Grewe (Advisor), 2016 |
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Anirban Mukhopadhyay, Oscar Morillo, Stefan Zachow, Hans Lamecker | Robust and Accurate Appearance Models Based on Joint Dictionary Learning Data from the Osteoarthritis Initiative | Lecture Notes in Computer Science, Patch-Based Techniques in Medical Imaging. Patch-MI 2016, pp. 25-33, Vol.9993, 2016 |
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Florian Bernard, Luis Salamanca, Johan Thunberg, Alexander Tack, Dennis Jentsch, Hans Lamecker, Stefan Zachow, Frank Hertel, Jorge Goncalves, Peter Gemmar | Shape-aware Surface Reconstruction from Sparse Data | arXiv, p. 1602.08425v1, 2016 |
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Hans Lamecker, Stefan Zachow | Statistical Shape Modeling of Musculoskeletal Structures and Its Applications | Computational Radiology for Orthopaedic Interventions, Springer, pp. 1-23, 2016, ISBN: 978-3-319-23481-6 |
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Robert Lemanis, Dieter Korn, Stefan Zachow, Erik Rybacki, René Hoffmann | The Evolution and Development of Cephalopod Chambers and Their Shape | PLOS ONE, 11(3), 2016 |
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Itamar D. Landau, Robert Egger, Vincent J. Dercksen, Marcel Oberlaender, Haim Sompolinsky | The Impact of Structural Heterogeneity on Excitation-Inhibition Balance in Cortical Networks | Neuron, 92(5), pp. 1106-1121, 2016 |
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Mason N. Dean, R. Seidel, David Knötel, K. Lyons, Daniel Baum, James C. Weaver, Peter Fratzl | To build a shark: 3D tiling laws of tessellated cartilage | Abstract in Integrative and Comparative Biology; conference Society of Integrative and Comparative Biology annual meeting, January 3-7, 2016, Portland, USA, Vol.56 (suppl 1), 2016 |
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Anirban Mukhopadhyay | Total Variation Random Forest: Fully automatic MRI segmentation in congenital heart disease | RAMBO 2016, HVSMR 2016: Reconstruction, Segmentation, and Analysis of Medical Images, pp. 165-171, Vol.LNCS 10129, 2016 |
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Leonid Goubergrits, Jan Osman, Ricardo Mevert, Ulrich Kertzscher, Kai Pöthkow, Hans-Christian Hege | Turbulence in blood damage modeling | The International Journal of Artificial Organs, 39(4), pp. 147-210, 2016 |
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David Knötel, Ronald Seidel, Ahmed Hosny, Paul Zaslansky, James C. Weaver, Daniel Baum, Mason N. Dean | Understanding the Tiling Rules of the Tessellated Mineralized Endoskeleton of Sharks and Rays | Poster, Euro Bio-inspired Materials 2016, Potsdam, Germany, February 22 - 25, 2016, 2016 |
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Guillaume Sagnol, Hans-Christian Hege, Martin Weiser | Using sparse kernels to design computer experiments with tunable precision | 22nd Intern. Conf. on Computational Statistics - COMPSTAT 2016, Oviedo, Spain, 23-26 August 2016, Proceedings ISBN 978-90-73592-36-0, pp. 397-408, 2016 (preprint available as ZIB-Report 16-33) |
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Tobias Arlt, Norbert Lindow, Daniel Baum, Andre Hilger, Ingo Mahnke, Hans-Christian Hege, Verena Lepper, Tzulia Siopi, Heinz.Eberhard Mahnke | Virtual Access to Hidden Texts – Study of Ancient Papyri | Eighth Joint BER II and BESSY II User Meeting, Dec 7-9, 2016, Berlin, Germany, 2016 |
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Norbert Lindow | Visual Analysis of Atomic Structures Based on the Hard-Sphere Model | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 |
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Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, Ivan Viola | Visual Analysis of Biomolecular Cavities: State of the Art | Computer Graphics Forum, 35(3), pp. 527-551, 2016 (preprint available as ZIB-Report 16-42) |
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Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, Hans-Christian Hege | Visualization of Biomolecular Structures: State of the Art Revisited | Computer Graphics Forum, 36(8), pp. 178-204, 2016 |
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2015 |
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Moritz Ehlke, Mark Heyland, Sven Märdian, Georg Duda, Stefan Zachow | 3D Assessment of Osteosynthesis based on 2D Radiographs | Proceedings of the Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), pp. 317-321, 2015 (preprint available as ZIB-Report 15-47) |
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Olaf Paetsch, Daniel Baum, Steffen Prohaska, Karsten Ehrig, Dietmar Meinel, Gino Ebell | 3D Corrosion Detection in Time-dependent CT Images of Concrete | DIR-2015 Proceedings, 2015 |
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Carl Martin Grewe | 3D Digital Morphology of Human Faces | Anthropologie der Wahrnehmung. Marsilius-Sommerakademie Heidelberg, 14.-20. September, 2015 |
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Moritz Sieber, Alexander Kuhn, Hans-Christian Hege, C. Oliver Paschereit, Kilian Oberleithner | A Graphical Representation of the Spectral Proper Orthogonal Decomposition | 68th Annual Meeting of the APS Division of Fluid Dynamics, Gallery of Fluid Motion, Nov 22-24, 2015, Boston, MA, USA., 2015 |
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Salah Saleh, Manish Sahu, Zuhair Zafar, Karsten Berns | A Multimodal Nonverbal Human-robot Communication System | VI International Conference on Computational Bioengineering, 2015 |
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Amal Aboulhassan, Daniel Baum, Olga Wodo, Baskar Ganapathysubramanian, Aram Amassian, Markus Hadwiger | A Novel Framework for Visual Detection and Exploration of Performance Bottlenecks in Organic Photovoltaic Solar Cell Materials | Computer Graphics Forum, 34(3), pp. 401-410, 2015 (preprint available as ZIB-Report 15-20) |
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Robert Lemanis, Stefan Zachow, Florian Fusseis, René Hoffmann | A new approach using high-resolution computed tomography to test the buoyant properties of chambered cephalopod shells | Paleobiology, 41(2), pp. 313-329, 2015 |
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Jürgen Titschack, Daniel Baum, Ricardo De Pol-Holz, Matthias López Correa, Nina Forster, Sascha Flögel, Dierk Hebbeln, André Freiwald | Aggradation and carbonate accumulation of Holocene Norwegian cold-water coral reefs | Sedimentology, 62(7), pp. 1873-1898, 2015 |
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Jürgen Titschack, Daniel Baum | Ambient occlusion - a powerful algorithm to segment skeletal intrapores and gastral cavities in dendrophyllid cold-water corals | Poster, 31st IAS Meeting of Sedimentology, 2015, June 22-25, Kraków, Poland, 2015 |
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Tim Conrad, Leonie Wallmeyer, Mona Rams, Stefan Börno, Bernd Timmermann, Sarah Hedtrich | Analyzing the Influence of Filaggrin on Other Skin Associated Genes in a Filaggrin Deficient Skin Model Using the Core Network Approach | Technical Report, 2015 |
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Christian Schulz, Christoph von Tycowicz, Hans-Peter Seidel, Klaus Hildebrandt | Animating articulated characters using wiggly splines | ACM SIGGRAPH / Eurographics Symposium on Computer Animation, pp. 101-109, 2015 |
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Eric Vincens, Karl Josef Witt, Ulrike Homberg | Approaches to Determine the Constriction Size Distribution for Understanding Filtration Phenomena in Granular Materials | Acta Geotechnica, 10(3), pp. 291-303, 2015 (preprint available as ZIB-Report 14-01) |
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Tim Conrad, Borong Shao | Are NoSQL data stores useful for bioinformatics researchers? | International Journal on Recent and Innovation Trends in Computing and Communication (IJRITCC), 3(3), pp. 1704-1708, 2015 |
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Moritz Ehlke, Mark Heyland, Sven Märdian, Georg Duda, Stefan Zachow | Assessing the relative positioning of an osteosynthesis plate to the patient-specific femoral shape from plain 2D radiographs | Proceedings of the 15th Annual Meeting of CAOS-International (CAOS), 2015 (preprint available as ZIB-Report 15-21) |
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Merlind Schotte | Automatische Dickenbestimmung der mineralisierten Schicht in Skelettelementen von Knorpelfischen anhand von CT- Bilddaten | Bachelor's thesis, Beuth Hochschule für Technik Berlin, Daniel Baum, Ute Wagner (Advisors), 2015 |
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Alexander Tack, Yuske Kobayashi, Tobias Gauer, Alexander Schlaefer, René Werner | Bewegungsfeldschätzung in artefaktbehafteten 4D-CT-Bilddaten: Vergleich von paar- und gruppenweiser Registrierung | 21st Annual Meeting of the German-Society-for-Radiation-Oncology, Vol.Supplement 1, pp. 65-65, Springer: Strahlentherapie und Onkologie, 191, 2015 |
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Stefan Zachow | Computational Planning in Facial Surgery | Facial Plastic Surgery, 31(5), pp. 446-462, 2015 |
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Anirban Mukhopadhyay, Ilkay Oksuz, Marco Bevilacqua, Rohan Dharmakumar, Sotirios Tsaftaris | Data-Driven Feature Learning for Myocardial Segmentation of CP-BOLD MRI | Functional Imaging and Modeling of the Heart, pp. 189-197, Vol.9126, Lecture Notes in Computer Science, 2015 |
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Ilkay Oksuz, Anirban Mukhopadhyay, Marco Bevilacqua, Rohan Dharmakumar, Sotirios Tsaftaris | Dictionary Learning Based Image Descriptor for Myocardial Registration of CP-BOLD MR | Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015, pp. 205-213, Vol.9350, Lecture Notes in Computer Science, 2015 |
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Carl Martin Grewe, Lisa Schreiber, Stefan Zachow | Fast and Accurate Digital Morphometry of Facial Expressions | Facial Plastic Surgery, 31(05), pp. 431-438, 2015 |
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Julián Lamas-Rodríguez, Moritz Ehlke, René Hoffmann, Stefan Zachow | GPU-accelerated denoising of large tomographic data sets with low SNR | ZIB-Report 15-14 |
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Alexander Tack, Yuske Kobayashi, Tobias Gauer, Alexander Schlaefer, René Werner | Groupwise Registration for Robust Motion Field Estimation in Artifact-Affected 4D CT Images | ICART: Imaging and Computer Assistance in Radiation Therapy: A workshop held on Friday 9th October as part of MICCAI 2015 in Munich, Germany. MICCAI workshop. 2015., pp. 18-25, 2015 |
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Alexander Tack | Gruppenweise Registrierung zur robusten Bewegungsfeldschätzung in artefaktbehafteten 4D-CT-Bilddaten | Master's thesis, Technische Universität Hamburg-Harburg, Alexander Schlaefer, Michael Morlock, René Werner (Advisors), 2015 |
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Tobias Kramer, Matthias Noack, Daniel Baum, Hans-Christian Hege, Eric J. Heller | Homogeneous dust emission and jet structure near active cometary nuclei: the case of 67P/Churyumov-Gerasimenko | 2015 |
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Tim Conrad, K. Karsch, Patrick Obermeier, L. Seeber, X. Chen, Franziska Tief, S. Muehlhans, Christian Hoppe, Sindy Boettcher, S. Diedrich, Barbara Rath | Human Parechovirus Infections Associated with Seizures and Rash: A Syndromic Surveillance Study in Children | The Pediatric Infectious Disease Journal, 34(10), 2015 |
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Alexander Kuhn, Silke Trömel | Intercomparison Study of Cloud Feature Extraction and Tracking Algorithms | Geophysical Research Abstracts, Vol 17, Vol.17, p. ID 14128, 2015 |
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Martin Krämer, Karl-Heinz Herrmann, Heide Boeth, Christoph von Tycowicz, Christian König, Stefan Zachow, Rainald Ehrig, Hans-Christian Hege, Georg Duda, Jürgen Reichenbach | Measuring 3D knee dynamics using center out radial ultra-short echo time trajectories with a low cost experimental setup | ISMRM (International Society for Magnetic Resonance in Medicine), 23rd Annual Meeting 2015, Toronto, Canada, 2015 |
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Zoe Cournia, Toby W. Allen, Ioan Andricioaei, Bruno Antonny, Daniel Baum, Grace Brannigan, Nicolae-Viorel Buchete, Jason T. Deckman, Lucie Delemotte, Coral del Val, Ran Friedman, Paraskevi Gkeka, Hans-Christian Hege, Jérôme Hénin, Marina A. Kasimova, Antonios Kolocouris, Michael L. Klein, Syma Khalid, Joanne Lemieux, Norbert Lindow, Mahua Roy, Jana Selent, Mounir Tarek, Florentina Tofoleanu, Stefano Vanni, Sinisa Urban, David J. Wales, Jeremy C. Smith, Ana-Nicoleta Bondar | Membrane Protein Structure, Function and Dynamics: A Perspective from Experiments and Theory | Journal of Membrane Biology, 248(4), pp. 611-640, 2015 |
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Tim Conrad, Victor Mireles | Minimum-overlap clusterings and the sparsity of overcomplete decompositions of binary matrics | Procedia Computer Science, Vol.51, pp. 2967-2971, 2015 |
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Kai Pöthkow | Modeling, Quantification and Visualization of Probabilistic Features in Fields with Uncertainties | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2015 |
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Marta Costa, Aaron D. Ostrovsky, James D. Manton, Steffen Prohaska, Gregory S.X.E. Jefferis | NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases | bioRxiv preprint, 2015 |
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Tim Conrad, Matthias Lenga | Non-convex regularization for supervised learning | Technical Report, 2015 |
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Bettina M. Willie, Thomas Pap, Carsten Perka, Carsten Oliver Schmidt, Felix Eckstein, Adamantios Arampatzis, Hans-Christian Hege, Henning Madry, Andrea Vortkamp, Georg Duda | OVERLOAD of joints and its role in osteoarthritis - Towards understanding and preventing progression of primary osteoarthritis | Zeitschrift für Rheumatologie, 76(Suppl. 1), pp. 1-4, 2015 |
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Bettina M. Willie, Thomas Pap, Carsten Perka, Carsten Oliver Schmidt, Felix Eckstein, Adamantios Arampatzis, Hans-Christian Hege, Henning Madry, Andrea Vortkamp, Georg Duda | OVERLOAD – Rolle der Gelenküberlastung in der primären Arthrose – Die Krankheitsprogression verstehen und vermeiden | Zeitschrift für Rheumatologie, Vol.74, pp. 618-621, 2015 |
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Robert Zahn, Sarah Grotjohann, Heiko Ramm, Stefan Zachow, Michael Putzier, Carsten Perka, Stephan Tohtz | Pelvic tilt compensates for increased acetabular anteversion | International Orthopaedics, 40(8), pp. 1571-1575, 2015 |
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Peter Deuflhard, Hans-Christian Hege | Raumtiefe in Malerei und Computergrafik | Räume - Bilder - Kulturen, pp. 33-46, Verena Lepper, Peter Deuflhard, Christoph Markschies (Eds.), Walter De Gruyter, 2015, ISBN: 978-3-11-035993-0 |
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Christoph von Tycowicz, Christian Schulz, Hans-Peter Seidel, Klaus Hildebrandt | Real-time Nonlinear Shape Interpolation | ACM Transactions on Graphics, 34(3), pp. 34:1-34:10, 2015 |
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Britta Weber | Reconstruction of Microtubule Centerlines from Electron Tomograms | Doctoral thesis, Freie Universität Berlin, Knut Reinert (Advisor), 2015 |
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Rebecca M. Hoerth, Daniel Baum, David Knötel, Steffen Prohaska, Bettina M. Willie, Georg Duda, Hans-Christian Hege, Peter Fratzl, Wolfgang Wagermaier | Registering 2D and 3D Imaging Data of Bone during Healing | Connective Tissue Research, 56(2), pp. 133-143, 2015 (preprint available as ZIB-Report 15-01) |
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David Knötel, Ronald Seidel, James C. Weaver, Daniel Baum, Mason N. Dean | Segmentation of the Tessellated Mineralized Endoskeleton of Sharks and Rays | Poster, Tomography for Scientific Advancement symposium (ToScA), Manchester, UK, September 3 - 4, 2015, 2015 |
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Marc Osterland, Andreas Benn, Steffen Prohaska, Christof Schütte | Single Cell Tracking in Phase-Contrast Microscopy | EMBL Symposium 2015 - Seeing is Believing - Imaging the Processes of Life, 2015 |
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Stefan Zachow, Werner Heppt | The Facial Profile | Facial Plastic Surgery, 31(5), pp. 419-420, 2015 |
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Leonardo Agudo Jácome, Gunter Eggeler, Kai Pöthkow, Olaf Paetsch, Hans-Christian Hege | Three-Dimensional Characterization of Superdislocation Interactions in the High Temperature and Low Stress Creep Regime of Ni-Base Superalloy Single Crystals | Proceedings of CREEP 2015 – 13th International Conference on Creep and Fracture of Engineering Materials and Structures, May 31 – June 4, 2015, Toulouse, France, pp. 16-17, 2015 |
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Stefan Bojarovski, Hans-Christian Hege, Han Cheng Lie, Marcus Weber | Topological analysis and visualization of scalar functions characterizing conformational transitions of molecules on multiple time-scales | Shape Up 2015 - Exercises in Materials Geometry and Topology, 14-18 Sept. 2015, Berlin, Germany, 2015 |
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Moritz Ehlke, Thomas Frenzel, Heiko Ramm, Mohsen Akbari Shandiz, Carolyn Anglin, Stefan Zachow | Towards Robust Measurement Of Pelvic Parameters From AP Radiographs Using Articulated 3D Models | Computer Assisted Radiology and Surgery (CARS), 2015 (preprint available as ZIB-Report 15-11) |
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Kei Matsuyama, Jürgen Titschack, Daniel Baum, André Freiwald | Two new species of erect Bryozoa (Gymnolaemata: Cheilostomata) and the application of non-destructive imaging methods for quantitative taxonomy | Zootaxa, 4020(1), pp. 81-100, 2015 |
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Anirban Mukhopadhyay, Ilkay Oksuz, Marco Bevilacqua, Rohan Dharmakumar, Sotirios Tsaftaris | Unsupervised myocardial segmentation for cardiac MRI | Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015, pp. 12-20, Vol.LNCS 9351, 2015 |
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David Wilson, Pia Bücher, Carl Martin Grewe, Valentin Mocanu, Carolyn Anglin, Stefan Zachow, Michael Dunbar | Validation of Three Dimensional Models of the Distal Femur Created from Surgical Navigation Data | Orthopedic Research Society Annual Meeting, Las Vegas, Nevada, 2015 |
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David Wilson, Pia Bücher, Carl Martin Grewe, Carolyn Anglin, Stefan Zachow, Dunbar Michael | Validation of Three Dimensional Models of the Distal Femur Created from Surgical Navigation Point Cloud Data | 15th Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery (CAOS), 2015 |
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Vincent J. Dercksen | Visual computing techniques for the reconstruction and analysis of anatomically realistic neural networks | Doctoral thesis, Freie Universität Berlin, Christof Schütte, Markus Hadwiger (Advisors), 2015 |
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Barbora Kozlikova, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, Hans-Christian Hege | Visualization of Biomolecular Structures: State of the Art | EuroVis 2015 STARS Proceedings, pp. 61-81, 2015 (preprint available as ZIB-Report 15-63) |
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2014 |
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Alexander Wiebel, Cornelius Müller, Christoph Garth, Thomas Knösche | A System for Combined Visualization of EEG and Diffusion Tensor Imaging Tractography Data | Visualization and Processing of Tensors and Higher-Order Descriptors for Multi-field Data, pp. 325-337, Carl-Frederic Westin, Bernhard Burgeth, Anna Vilanova (Eds.), Springer, 2014 |
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Ingo Todt, Hans Lamecker, Heiko Ramm, Arneborg Ernst | A computed tomographic data-based vibrant bonebridge visualization tool | Cochlear Implants International, 15(S1), pp. 72-74, 2014 |
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Jürgen Titschack, Daniel Baum | Advanced computed tomography analyses of cold-water coral mound cores: new insights into mound formation processes | Poster, 19th International Sedimentological Congress, Geneva, Switzerland, 2014, August 18 - 22, 2014 |
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Christian Schulz, Christoph von Tycowicz, Hans-Peter Seidel, Klaus Hildebrandt | Animating Deformable Objects Using Sparse Spacetime Constraints | ACM Transactions on Graphics, 33(4), pp. 109:1-109:10, 2014 |
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Wito Engelke, Alexander Kuhn, Markus Flatken, Fang Chen, Hans-Christian Hege, Andreas Gerndt, Ingrid Hotz | Atmospheric Impact of Volcano Eruptions | Proceedings IEEE SciVis 2014, 2014 |
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Britta Weber, Erin M. Tranfield, Johanna L. Höög, Daniel Baum, Claude Antony, Tony Hyman, Jean-Marc Verbavatz, Steffen Prohaska | Automated stitching of microtubule centerlines across serial electron tomograms | PLoS ONE, p. e113222, 2014 (preprint available as ZIB-Report 14-41) |
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Steffen Oeltze, Dirk J. Lehmann, Alexander Kuhn, Gábor Janiga, Holger Theisel, Bernhard Preim | Blood Flow Clustering and Applications in Virtual Stenting of Intracranial Aneurysms | IEEE Transactions on Visualization and Computer Graphics, 2014, 20(5), pp. 686-701, 2014 |
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Maria Isabel von Hafe Pérez Ferreira da Silva | Computational Left-Ventricle Reconstruction from MRI Data for Patient-specific Cardiac Simulations | Master's thesis, Universidade do Porto, Hans-Christian Hege, Hans Lamecker, Aurélio Campilho, Jorge Novo Buján (Advisors), 2014 |
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Christoph von Tycowicz | Concepts and Algorithms for the Deformation, Analysis, and Compression of Digital Shapes | Doctoral thesis, Freie Universität Berlin, Konrad Polthier (Advisor), 2014 |
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Frank Mücklich, Johannes Webel, Hisham Aboulfadl, Norbert Lindow, Hans-Christian Hege | Correlative Tomography – Extraction of Reliable Information with Adequate Resolution from mm Scale Down to Sub-nm Scale | Microsc. Microanal., 20(Suppl 3), pp. 838-839, 2014 |
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Ulrike Homberg, Daniel Baum, Alexander Wiebel, Steffen Prohaska, Hans-Christian Hege | Definition, Extraction, and Validation of Pore Structures in Porous Materials | Topological Methods in Data Analysis and Visualization III, pp. 235-248, Peer-Timo Bremer, Ingrid Hotz, Valerio Pascucci, Ronald Peikert (Eds.), Springer, 2014 (preprint available as ZIB-Report 13-56) |
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Ingo Todt, Hans Lamecker, Heiko Ramm, Henning Frenzel, Barbara Wollenberg, Thomas Beleites, Thomas Zahnert, Jan Peter Thomas, Stefan Dazert, Arneborg Ernst | Entwicklung eines CT-Daten-basierten Vibrant-Bonebridge-Viewers | HNO, Vol.62, pp. 439-442, 2014 |
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Dietmar Meinel, Karsten Ehrig, Valrie Lhostis, Benoist Muzeau, Olaf Paetsch | Examination of Damage Processes in Concrete with CT | Proceedings of Conference on Industrial Computed Tomography, 2014 (accepted for publication) |
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Tamaz Amiranashvili | Fitting Smooth Strips to Rough Surfaces | Master's thesis, Freie Universität Berlin, 2014 |
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Mascha Hochfeld, Hans Lamecker, Ulrich W. Thomale, Matthias Schulz, Stefan Zachow, Hannes Haberl | Frame-based cranial reconstruction | Journal of Neurosurgery: Pediatrics, 13(3), pp. 319-323, 2014 |
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Robert Egger, Vincent J. Dercksen, Daniel Udvary, Hans-Christian Hege, Marcel Oberlaender | Generation of dense statistical connectomes from sparse morphological data | Frontiers in Neuroanatomy, 8(129), 2014 (preprint available as ZIB-Report 14-43) |
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Konrad Polthier, Alexander Bobenko, Klaus Hildebrandt, Ralf Kornhuber, Christoph von Tycowicz, Harry Yserentant, Günter M. Ziegler | Geometry processing | MATHEON - Mathematics for Key Technologies, EMS Publishing House, pp. 341-355, 2014, ISBN: 978-3-03719-137-8 |
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Erik Sniegula | Histogram-based Visualization and Analysis of Vector Fields using Stream Line Projection Plots | Master's thesis, Freie Universität Berlin, Alexander Kuhn, Konrad Polthier (Advisors), 2014 |
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Hans Lamecker, Hans-Christian Hege, Karsten Tabelow, Jörg Polzehl | Image Processing | MATHEON - Mathematics for Key Technologies, pp. 359-376, Peter Deuflhard, et al. (Eds.), European Mathematical Society, 2014 |
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Leonid Goubergrits, Andreas Spuler, Jens Schaller, Nils Wiegmann, Andre Berthe, Hans-Christian Hege, Klaus Affeld, Ulrich Kertzscher | In vitro study of hemodynamic treatment improvement: Hunterian ligation of a fenestrated basilar artery aneurysm after coiling | The International Journal of Artificial Organs, 37(4), pp. 325-335, 2014 |
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Olaf Paetsch, Daniel Baum, Steffen Prohaska, Karsten Ehrig, Gino Ebell, Dietmar Meinel, Andreas Heyn | Korrosionsverfolgung in 3D-computertomographischen Aufnahmen von Stahlbetonproben | DGZfP-Jahrestagung 2014 Konferenzband, 2014 (preprint available as ZIB-Report 14-24) |
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Norbert Lindow, Daniel Baum, Hans-Christian Hege | Ligand Excluded Surface: A New Type of Molecular Surface | IEEE Transactions on Visualization and Computer Graphics, 20(12), pp. 2486-2495, 2014 (preprint available as ZIB-Report 14-27) |
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Ronald Seidel, David Knötel, Daniel Baum, James C. Weaver, Mason N. Dean | Material and structural characterization of mineralized elasmobranch cartilage – lessons in repeated tiling patterns in mechanically loaded 3D objects | Poster, Tomography for Scientific Advancement symposium (ToScA), London, UK, September 1 - 3, 2014, 2014 |
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Marco Sarich, Natasa Djurdjevac Conrad, Sharon Bruckner, Tim Conrad, Christof Schütte | Modularity revisited: A novel dynamics-based concept for decomposing complex networks | Journal of Computational Dynamics, 1(1), pp. 191-212, 2014 |
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Hannelore Hoch, Andreas Wessel, Manfred Asche, Daniel Baum, Felix Beckmann, Peter Bräunig, Karsten Ehrig, Roland Mühlethaler, Heinrich Riesemeier, Andreas Staude, Björn Stelbrink, Ekkehard Wachmann, Phyllis Weintraub, Benjamin Wipfler, Carsten Wolff, Mathias Zilch | Non-Sexual Abdominal Appendages in Adult Insects Challenge a 300 Million Year Old Bauplan | Current Biology, 24(1), pp. R16-R17, 2014 |
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René Hoffmann, Julia A. Schultz, Rico Schellhorn, Erik Rybacki, Helmut Keupp, S. R. Gerden, Robert Lemanis, Stefan Zachow | Non-invasive imaging methods applied to neo- and paleontological cephalopod research | Biogeosciences, 11(10), pp. 2721-2739, 2014 (preprint available as ZIB-Report 14-18) |
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Marc Schöneich, Markus Stommel, Andrea Kratz, Valentin Zobel, Gerik Scheuermann, Ingrid Hotz, Bernhard Burgeth | Optimization strategy for the design of ribbed plastic components | International Journal of Plastics Technology, pp. 160-175, 2014 |
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Georges-Pierre Bonneau, Hans-Christian Hege, Chris R. Johnson, Manuel M. Oliveira, Kristin Potter, Penny Rheingans, Thomas Schultz | Overview and State-of-the-Art of Uncertainty Visualization | Scientific Visualization - Uncertainty, Multifield, Biomedical, and Scalable Visualization, Springer, pp. 3-27, 2014, ISBN: 978-1-4471-6496-8 |
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Gianni Campoli, Nora Baka, Bart Kaptein, Edward Valstar, Stefan Zachow, Harrie Weinans, Amir Abbas Zadpoor | Relationship between the shape and density distribution of the femur and its natural frequencies of vibration | Journal of Biomechanics, Vol.47, pp. 3334-3343, 2014 |
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Robert Egger, Vincent J. Dercksen, Christiaan P.J. Kock, Marcel Oberlaender | Reverse Engineering the 3D Structure and Sensory-Evoked Signal Flow of Rat Vibrissal Cortex | The Computing Dendrite, Vol.11, pp. 127-145, Hermann Cuntz, Michiel W.H. Remme, Benjamin Torben-Nielsen (Eds.), Springer: New York, 2014 |
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Moritz Ehlke, Thomas Frenzel, Heiko Ramm, Hans Lamecker, Mohsen Akbari Shandiz, Carolyn Anglin, Stefan Zachow | Robust Measurement of Natural Acetabular Orientation from AP Radiographs using Articulated 3D Shape and Intensity Models | ZIB-Report 14-12 (Presented at the 14th Annual Meeting of CAOS-International (CAOS)) |
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Iliusi Vega, Christof Schütte, Tim Conrad | SAIMeR: Self-adapted method for the identification of metastable states in real-world time series | ZIB-Report 14-16 |
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David Knötel | Segmentation of ray and shark tesserae | Master's thesis, Freie Universität Berlin, Daniel Baum (Advisor), 2014 |
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Christof Schütte, Tim Conrad | Showcase 3: Information-based medicine | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 66-67, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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Andrea Kratz, Marc Schöneich, Valentin Zobel, Bernhard Burgeth, Gerik Scheuermann, Ingrid Hotz, Markus Stommel | Tensor Visualization Driven Mechanical Component Design | Proc. IEEE Pacific Visualization Symposium 2014, pp. 145-152, 2014 |
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Vincent J. Dercksen, Hans-Christian Hege, Marcel Oberlaender | The Filament Editor: An Interactive Software Environment for Visualization, Proof-Editing and Analysis of 3D Neuron Morphology | NeuroInformatics, 12(2), pp. 325-339, 2014 (preprint available as ZIB-Report 13-75) |
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Daniel Baum, Kristin Mahlow, Hans Lamecker, Stefan Zachow, Johannes Müller, Hans-Christian Hege | The Potential of Surface-based Geometric Morphometrics for Evolutionary Studies: An Example using Dwarf Snakes (Eirenis) | Abstract in DigitalSpecimen 2014, 2014 |
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Stefanie Redemann, Britta Weber, Marit Möller, Jean-Marc Verbavatz, Anthony Hyman, Daniel Baum, Steffen Prohaska, Thomas Müller-Reichert | The Segmentation of Microtubules in Electron Tomograms Using Amira | Mitosis: Methods and Protocols, pp. 261-278, Springer, 2014 |
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Alexander Kuhn, Wito Engelke, Christian Rössl, Markus Hadwiger, Holger Theisel | Time Line Cell Tracking for the Approximation of Lagrangian Coherent Structures with Subgrid Accuracy | Computer Graphics Forum, Vol.33, pp. 222-234, 2014 |
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Mario Hlawitschka, Ingrid Hotz, Andrea Kratz, G. Elisabeta Marai, Rodrigo Moreno, Gerik Scheuermann, Markus Stommel, Alexander Wiebel, Eugene Zhang | Top Challenges in the Visualization of Engineering Tensor Fields | Visualization and Processing of Tensors and Higher-Order Descriptors for Multi-Field Data, Carl-Frederic Westin, Bernhard Burgeth, Anna Vilanova (Eds.), Springer, pp. 3-15, 2014 |
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Sergej Stoppel, Hans-Christian Hege, Alexander Wiebel | Visibility-driven depth determination of surface patches in direct volume rendering | EuroVis - Short Papers 2014, pp. 97-101, 2014 (preprint available as ZIB-Report 14-11) |
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Hans-Christian Hege | Visual analysis of molecular dynamics data using geometric and topological methods | Forum "Math for Industry" 2014, pp. 45-46, Vol.57, MI Lecture Notes, Kyushu University, 2014 |
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Konrad Polthier, John Sullivan, Günter M. Ziegler, Hans-Christian Hege | Visualization | MATHEON - Mathematics for Key Technologies, pp. 335-339, Peter Deuflhard, et al. (Eds.), European Mathematical Society, 2014, ISBN: 978-3-03719-137-8 |
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Hanspeter Pfister, Verena Kaynig, Charl P. Botha, Stefan Bruckner, Vincent J. Dercksen, Hans-Christian Hege, Jos B.T.M. Roerdink | Visualization in Connectomics | Scientific Visualization - Uncertainty, Multifield, Biomedical, and Scalable Visualization, Charles D. Hansen, Min Chen, Christopher R. Johnson, Arie E. Kaufman, Hans Hagen (Eds.), Springer, pp. 221-245, 2014, ISBN: 978-1-4471-6496-8 |
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2013 |
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Olaf Paetsch, Daniel Baum, David Breßler, Karsten Ehrig, Dietmar Meinel, Steffen Prohaska | 3-D-Visualisierung und statistische Analyse von Rissen in mit Computer-Tomographie untersuchten Betonproben | Tagungsband der DGZfP Jahrestagung 2013, 2013 |
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Alexander Wiebel, Philipp Preis, Frans Vos, Hans-Christian Hege | 3D Strokes on Visible Structures in Direct Volume Rendering | EuroVis - Short Papers, Mario Hlawitschka, Tino Weinkauf (Eds.), pp. 91-95, 2013 |
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Francis Galloway, Max Kahnt, Heiko Ramm, Peter Worsley, Stefan Zachow, Prasanth Nair, Mark Taylor | A large scale finite element study of a cementless osseointegrated tibial tray | Journal of Biomechanics, 46(11), pp. 1900-1906, 2013 |
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Pooja Gupta, Norbert Reinsch, Andreas Spötter, Tim Conrad, Kaspar Bienefeld | Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera) | BMC Genetics, 14(36), 2013 |
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Christoph von Tycowicz, Christian Schulz, Hans-Peter Seidel, Klaus Hildebrandt | An Efficient Construction of Reduced Deformable Objects | ACM Transactions on Graphics, 32(6), pp. 213:1-213:10, 2013 |
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Andrea Kratz, Daniel Baum, Ingrid Hotz | Anisotropic Sampling of Planar and Two-Manifold Domains for Texture Generation and Glyph Distribution | Transactions on Visualization and Computer Graphics (TVCG), Vol.19, pp. 1782-1794, 2013 |
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Kai Pöthkow, Christoph Petz, Hans-Christian Hege | Approximate Level-Crossing Probabilities for Interactive Visualization of Uncertain Isocontours | International Journal for Uncertainty Quantification, 3(2), pp. 101-117, 2013 |
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Matthias Bindernagel | Articulated Statistical Shape Models | Master's thesis, Humboldt-Universität zu Berlin, Beate Meffert (Advisor), 2013 |
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Cornelia Auer, Jens Kasten, Andrea Kratz, Eugene Zhang, Ingrid Hotz | Automatic, Tensor-Guided Illustrative Vector Field Visualization | Proc. IEEE Pacific Visualization Symposium 2013, pp. 265-275, 2013 |
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Max Zinser, Stefan Zachow, Hermann Sailer | Bimaxillary "rotation advancement" procedures in patients with obstructive sleep apnea: A 3-dimensional airway analysis of morphological changes | International Journal of Oral & Maxillofacial Surgery, 42(5), pp. 569-578, 2013 |
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Alexander Wiebel, Philipp Preis, Frans M. Vos, Hans-Christian Hege | Computation and Application of 3D Strokes on Visible Structures in Direct Volume Rendering | ZIB-Report 13-20 |
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Esfandiar Nava-Yazdani, Konrad Polthier | De Casteljau's Algotithm on Manifolds | Computer Aided Geometric Design, 30(7), pp. 722-732, 2013 |
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Dagmar Kainmüller | Deformable Meshes for Accurate Automatic Segmentation of Medical Image Data | Doctoral thesis, Universität zu Lübeck, Bernd Fischer †, Jan Modersitzki (Advisors), 2013 |
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Kim Kubiack | Erstellung eines statistischen Formmodells des Mittelgesichts zur Planung individueller Templates für die navigationsgestützte Rekonstruktion des Mittelgesichtsschädels | Doctoral thesis, Medizinische Hochschule Hannover, Nils-Claudius Gellrich, Stefan Zachow, Enno-Ludwig Barth, Alexander Schramm, Harald Essig, Hans Lamecker (Advisors), 2013 |
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Thomas Hildebrandt, Leonid Goubergrits, Werner Heppt, Stefan Bessler, Stefan Zachow | Evaluation of the Intranasal Flow Field through Computational Fluid Dynamics (CFD) | Journal of Facial and Plastic Surgery, 29(2), pp. 93-98, 2013 |
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Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege | Exploring cavity dynamics in biomolecular systems | BMC Bioinformatics, Vol.14, 2013 |
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Moritz Ehlke, Heiko Ramm, Hans Lamecker, Hans-Christian Hege, Stefan Zachow | Fast Generation of Virtual X-ray Images for Reconstruction of 3D Anatomy | IEEE Transactions on Visualization and Computer Graphics, 19(12), pp. 2673-2682, 2013 (preprint available as ZIB-Report 13-38) |
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Tim Conrad, Sharon Bruckner, Bastian Kayser | Finding Modules in Networks with Non-modular Regions | Lecture Notes in Computer Science (Proceedings of SEA 2013), Vol.7933, pp. 188-199, 2013 |
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David Fournier, Gareth A. Palidwor, Sergey Shcherbinin, Angelika Szengel, Martin H. Schaefer, Carol Perez-Iratxeta, Miguel A. Andrade-Navarro | Functional and Genomic Analyses of Alpha-Solenoid Proteins | PLoS ONE Journal, 2013 |
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Julián Lamas-Rodríguez, Dora Blanco Heras, Francisco Argüello, Dagmar Kainmüller, Stefan Zachow, Montserrat Bóo | GPU-accelerated level-set segmentation | Journal of Real-Time Image Processing, pp. 1-15, 2013 |
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Bruno Kirschner | Interaktives Planungstool zur 3D Rekonstruktion von Knochenresektion | Bachelor's thesis, Beuth Hochschule für Technik Berlin, 2013 |
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Stefan Saevarsson, Gulshan Sharma, Heiko Ramm, Robert Lieck, Carol Hutchison, Jason Werle, Sigrun Montgomery, Carolina Romeo, Stefan Zachow, Carolyn Anglin | Kinematic Differences Between Gender Specific And Traditional Knee Implants | The Journal of Arthroplasty, 28(9), pp. 1543-1550, 2013 |
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Alexander Kuhn | Lagrangian Methods for Visualization and Analysis of Time-dependent Vector Fields | Doctoral thesis, Otto-von-Guericke-Universität Magdeburg, Prof. Dr. Holger Theisel (Advisor), 2013 |
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Carl Martin Grewe, Hans Lamecker, Stefan Zachow | Landmark-based Statistical Shape Analysis | Auxology - Studying Human Growth and Development url, pp. 199-201, Michael Hermanussen (Ed.), Schweizerbart Verlag, Stuttgart, 2013 |
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Tobias Günther, Alexander Kuhn, Benjamin Kutz, Holger Theisel | Mass-Dependent Integral Curves in Unsteady Vector Fields | Computer Graphics Forum, Vol.32, pp. 211-220, 2013 |
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Kai Pöthkow, Hans-Christian Hege | Nonparametric Models for Uncertainty Visualization | Computer Graphics Forum, 32(3), pp. 131-140, 2013 |
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Dagmar Kainmüller, Hans Lamecker, Markus O. Heller, Britta Weber, Hans-Christian Hege, Stefan Zachow | Omnidirectional Displacements for Deformable Surfaces | Medical Image Analysis, 17(4), pp. 429-441, 2013 |
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Tim Conrad, Alexander Benedikt Leichtle, Uta Ceglarek, P. Weinert, C.T. Nakas, Jean-Marc Nuoffer, Julia Kase, Helmut Witzigmann, Joachim Thiery, Georg Martin Fiedler | Pancreatic carcinoma, pancreatitis, and healthy controls - metabolite models in a three-class diagnostic dilemma | Metabolomics, 9(3), pp. 677-687, 2013 |
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Leonid Goubergrits, Jens Schaller, Ulrich Kertzscher, Christoph Petz, Hans-Christian Hege, Andreas Spuler | Reproducibility of Image-Based Analysis of Cerebral Aneurysm Geometry and Hemodynamics: An In-Vitro Study of Magnetic Resonance Imaging, Computed Tomography, and Three-Dimensional Rotational Angiography | Journal of Neurological Surgery, Part A: Central European Neurosurgery, 74(5), pp. 294-302, 2013 |
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Andrea Kratz | Three-Dimensional Second-Order Tensor Fields: Exploratory Visualization and Anisotropic Sampling | Doctoral thesis, Freie Universität Berlin, Ingrid Hotz, Markus Hadwiger (Advisors), 2013 |
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Alexander Kuhn, Wito Engelke, Christian Rössl, Markus Hadwiger, Holger Theisel | Time Line Cell Tracking for the Approximation of Lagrangian Coherent Structures with Subgrid Accuracy | ZIB-Report 13-71 |
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Tim Conrad, Barbara Rath, Franziska Tief, K. Karsch, S. Muehlhans, Patrick Obermeier, E. Adamou, X. Chen, L. Seeber, Ch. Peiser, Christian Hoppe, Max von Kleist, Brunhilde Schweiger | Towards a personalized approach to managing of influenza infections in infants and children - food for thought and a note on oseltamivir | Infectious Disorders - Drug Targets, 13(1), pp. 25-33, 2013 |
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Alexander Kuhn, Norbert Lindow, Tobias Günther, Alexander Wiebel, Holger Theisel, Hans-Christian Hege | Trajectory Density Projection for Vector Field Visualization | EuroVis 2013, short papers. M. Hlawitschka, Tino Weinkauf (eds.), pp. 31-35, 2013 |
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Sergej Stoppel | Visibility-Driven Depth Determination of Surface Patches in Direct Volume Rendering | Master's thesis, Freie Universität Berlin, Alexander Wiebel, Konrad Polthier (Advisors), 2013 |
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Heiko Ramm, Oscar Salvador Victoria Morillo, Ingo Todt, Hartmut Schirmacher, Arneborg Ernst, Stefan Zachow, Hans Lamecker | Visual Support for Positioning Hearing Implants | Proceedings of the 12th annual meeting of the CURAC society, Wolfgang Freysinger (Ed.), pp. 116-120, 2013 (preprint available as ZIB-Report 13-53) |
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Andrea Kratz, Cornelia Auer, Markus Stommel, Ingrid Hotz | Visualization and Analysis of Second-Order Tensors: Moving Beyond the Symmetric Positive-Definite Case | Computer Graphics Forum - State of the Art Reports, Vol.1, pp. 49-74, 2013 |
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Valentin Zobel, Jan Reininghaus, Ingrid Hotz | Visualization of Two-Dimensional Symmetric Tensor Fields Using the Heat Kernel Signature | Topological Methods in Data Analysis and Visualization III, pp. 249-262, Davis, CA, USA, 2013 |
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Stefan Koch, Alexander Wiebel, Jens Kasten, Mario Hlawitschka | Visualizing Linear Neighborhoods in Non-Linear Vector Fields | Proceedings of the IEEE Pacific Visualization Symposium, pp. 249-256, 2013 |
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2012 |
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Mike Sips, Patrick Kothur, Andrea Unger, Hans-Christian Hege, Doris Dransch | A Visual Analytics Approach to Multiscale Exploration of Environmental Time Series | IEEE Transactions on Visualization and Computer Graphics, 18(12), pp. 2899-2907, 2012 |
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Tino Weinkauf, Hans-Christian Hege, Holger Theisel | Advected Tangent Curves: A General Scheme for Characteristic Curves of Flow Fields | Computer Graphics Forum, 31(2pt4), pp. 825-834, 2012 |
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Jens Kasten, Andre Zoufahl, Hans-Christian Hege, Ingrid Hotz | Analysis of Vortex Merge Graphs | VMV 2012: Vision, Modeling and Visualization, pp. 111-118, 2012 |
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Matthias Bindernagel, Dagmar Kainmüller, Heiko Ramm, Hans Lamecker, Stefan Zachow | Analysis of inter-individual anatomical shape variations of joint structures | Proc. Int. Society of Computer Assisted Orthopaedic Surgery (CAOS), 2012 |
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Olaf Paetsch, Daniel Baum, Karsten Ehrig, Dietmar Meinel, Steffen Prohaska | Automated 3D Crack Detection for Analyzing Damage Processes in Concrete with Computed Tomography | Proceedings of Conference on Industrial Computed Tomography, pp. 321-330, 2012 |
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Alexander Rigort, David Günther, Reiner Hegerl, Daniel Baum, Britta Weber, Steffen Prohaska, Ohad Medalia, Wolfgang Baumeister, Hans-Christian Hege | Automated segmentation of electron tomograms for a quantitative description of actin filament networks | Journal of Structural Biology, Vol.177, pp. 135-144, 2012 |
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Britta Weber, Garrett Greenan, Steffen Prohaska, Daniel Baum, Hans-Christian Hege, Thomas Müller-Reichert, Anthony Hyman, Jean-Marc Verbavatz | Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryos | Journal of Structural Biology, 178(2), pp. 129-138, 2012 |
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The Duy Nguyen, Hans Lamecker, Dagmar Kainmüller, Stefan Zachow | Automatic Detection and Classification of Teeth in CT Data | Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), Nicholas Ayache, Hervé Delingette, Polina Golland, Kensaku Mori (Eds.), pp. 609-616, Vol.7510, Lecture Notes in Computer Science, 2012 |
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Ulrike Homberg, Daniel Baum, Steffen Prohaska, Ute Kalbe, Karl Josef Witt | Automatic Extraction and Analysis of Realistic Pore Structures from µCT Data for Pore Space Characterization of Graded Soil | Proceedings of the 6th International Conference on Scour and Erosion (ICSE-6), pp. 345-352, 2012 |
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The Duy Nguyen, Dagmar Kainmüller, Hans Lamecker, Stefan Zachow | Automatic bone and tooth detection for CT-based dental implant planning | Int. J. Computer Assisted Radiology and Surgery, 7, Supplement 1(1), pp. 293-294, 2012 |
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Sara Orgiu | Automatic liver segmentation in contrast enhanced CT data using 3D free-form deformation based on optimal graph searching | Master's thesis, Politecnico di Milano, Pietro Cerveri, Hans Lamecker (Advisors), 2012 |
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The Duy Nguyen | Automatic segmentation for dental operation planning | Master's thesis, Technische Universität Dresden, Stefan Gumhold, Stefan Zachow (Advisors), 2012 |
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Alexander Surma | Automatisierte Registrierung von 2D-Daten in 3-dimensionalen Volumen mit Hilfe von ZIBAmira | Bachelor's thesis, Freie Universität Berlin, Daniel Baum, Ingrid Hotz (Advisors), 2012 |
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Marcel Oberlaender, Christiaan P. J. de Kock, Randy M. Bruno, Alejandro Ramirez, Hanno Meyer, Vincent J. Dercksen, Moritz Helmstaedter, Bert Sakmann | Cell Type-Specific Three-Dimensional Structure of Thalamocortical Circuits in a Column of Rat Vibrissal Cortex | Cerebral Cortex, 22(10), pp. 2375-2391, 2012 |
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Jan Reininghaus, David Günther, Ingrid Hotz, Tino Weinkauf, Hans Peter Seidel | Combinatorial Gradient Fields for 2D Images with Empirically Convergent Separatrices | 2012arXiv |
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Jan Reininghaus, Ingrid Hotz | Computational Discrete Morse Theory for Divergence-Free 2D Vector Fields | Topological Methods in Data Analysis and Visualization. Theory, Algorithms, and Applications. (TopoInVis 2011), pp. 3-14, Ronald Peikert, Hamish Carr, Helwig Hauser (Eds.), Springer, 2012 |
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Jan Reininghaus | Computational discrete Morse theory | Doctoral thesis, Otto-von-Guericke-Universität Magdeburg, 2012 |
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Franciscus Vos, Jeroen Tielbeek, Robiel Naziroglu, Zhang Li, Peter Schueffler, Dwarikanath Mahapatra, Alexander Wiebel, Christina Lavini, Joachim Buhmann, Hans-Christian Hege, Jaap Stoker, Lucas van Vliet | Computational modeling for assessment of IBD: to be or not to be? | 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pp. 3974-3977, 2012 |
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Karen Ho, Stefan Saevarsson, Heiko Ramm, Robert Lieck, Stefan Zachow, Gulshan Sharma, Erica Rex, Shahram Amiri, Barnabas Wu, Andre Leumann, Carolyn Anglin | Computed tomography analysis of knee pose and geometry before and after total knee arthroplasty | Journal of biomechanics, 45(13), pp. 2215-21, 2012 |
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Heiko Ramm, Stefan Zachow | Computergestützte Planung für die individuelle Implantatversorgung | Health Academy, Wolfgang Niederlag, Heinz Lemke, Heinz-Otto Peitgen, Hans Lehrach (Eds.), pp. 145-158, 2012 |
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Marco Klindt, Steffen Prohaska, Daniel Baum, Hans-Christian Hege | Conveying Archaeological Contexts to Museum Visitors: Case Study Pergamon Exhibition | VAST12: The 13th International Symposium on Virtual Reality, Archaeology and Intelligent Cultural Heritage - Short Papers, David Arnold, Jaime Kaminski, Franco Niccolucci, Andre Stork (Eds.), pp. 25-28, 2012 |
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Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege | Dynamic Channels in Biomolecular Systems: Path Analysis and Visualization | Proceedings of IEEE Symposium on Biological Data Visualization (biovis’12), pp. 99-106, 2012 |
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David Günther, Jan Reininghaus, Hubert Wagner, Ingrid Hotz | Efficient Computation of 3D Morse-Smale Complexes and Persistent Homology using Discrete Morse Theory | The Visual Computer, 28(10), pp. 959-969, 2012 |
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Jan Reininghaus, Jens Kasten, Tino Weinkauf, Ingrid Hotz | Efficient Computation of Combinatorial Feature Flow Fields | Transactions on Visualization and Computer Graphics, 18(9), pp. 1563-1573, 2012 |
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David Günther, Jan Reininghaus, Steffen Prohaska, Tino Weinkauf, Hans-Christian Hege | Efficient Computation of a Hierarchy of Discrete 3D Gradient Vector Fields | Topological Methods in Data Analysis and Visualization II, pp. 15-29, Ronny Peikert, Helwig Hauser, Hamish Carr (Eds.), Springer, 2012 |
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Moritz Ehlke, Heiko Ramm, Hans Lamecker, Stefan Zachow | Efficient projection and deformation of volumetric intensity models for accurate simulation of X-ray images | ZIB-Report 12-40 (Presented at the 12th Annual Meeting of CAOS-International (CAOS)) |
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Moritz Ehlke, Heiko Ramm, Hans Lamecker, Stefan Zachow | Efficient projection and deformation of volumetric shape and intensity models for accurate simulation of X-ray images | Eurographics Workshop on Visual Computing for Biomedicine (NVIDIA best poster award), 2012 |
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Jana Malinowski | Ein kontinuierliches Optimierungsverfahren für die Segmentierung medizinischer Bilddaten mit Hilfe von Formmodellen | Master's thesis, Humboldt-Universität zu Berlin, 2012 |
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Andre Zoufahl | Explorative Analysis of Vortex Structures in 2D Flows | Bachelor's thesis, Freie Universität Berlin, Ingrid Hotz (Advisor), 2012 |
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Max Kahnt, Heiko Ramm, Hans Lamecker, Stefan Zachow | Feature-Preserving, Multi-Material Mesh Generation using Hierarchical Oracles | Proc. MICCAI Workshop on Mesh Processing in Medical Image Analysis (MeshMed), Joshua A. Levine, Rasmus R. Paulsen, Yongjie Zhang (Eds.), pp. 101-111, Vol.7599, Lecture Notes in Computer Science, 2012 |
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Max Kahnt | Generation of constrained high-quality multi-material tetrahedral meshes | Master's thesis, Freie Universität Berlin, Konrad Polthier, Hans Lamecker, Stefan Zachow (Advisors), 2012 |
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Cornelia Auer, Claudia Stripf, Andrea Kratz, Ingrid Hotz | Glyph- and Texture-based Visualization of Segmented Tensor Fields | GRAPP/IVAPP Proc. Int. Conf. on Computer Graphics Theory and Applications and Int. Conf. on Information Visualization Theory and Applications, pp. 670-677, 2012, ISBN: 978-989-8565-02-0 |
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Markus O. Heller, Alexander Wurl, Carsten Perka, Hans-Christian Hege | In vivo gluteus medius volume and shape variations across gender and disease status | Journal of Biomechanics, p. S358, Vol.45, Suppl. 1, 2012 |
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Norbert Lindow, Daniel Baum, Hans-Christian Hege | Interactive Rendering of Materials and Biological Structures on Atomic and Nanoscopic Scale | Computer Graphics Forum, 31(3), pp. 1325-1334, 2012 |
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Vincent J. Dercksen, Marcel Oberlaender, Bert Sakmann, Hans-Christian Hege | Interactive Visualization – a Key Prerequisite for Reconstruction of Anatomically Realistic Neural Networks | Visualization in Medicine and Life Sciences II, pp. 27-44, Lars Linsen, Hans Hagen, Bernd Hamann, Hans-Christian Hege (Eds.), Springer, Berlin, 2012 |
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Klaus Hildebrandt, Christian Schulz, Christoph von Tycowicz, Konrad Polthier | Interactive spacetime control of deformable objects | ACM Transactions on Graphics, 31(4), pp. 71:1-71:8, 2012 |
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Saevarsson Stefan, Sharma Gulshan, Montgomery Sigrun, Ho Karen, Heiko Ramm, Robert Lieck, Stefan Zachow, Carol Hutchison, Werle Jason, Anglin Carolyn | Kinematic Comparison Between Gender Specific and Traditional Femoral Implants | 67th Canadian Orthopaedic Association (COA) Annual Meeting, 2012 |
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Gulshan Sharma, Karen Ho, Stefan Saevarsson, Heiko Ramm, Robert Lieck, Stefan Zachow, Carolyn Anglin | Knee Pose and Geometry Pre- and Post-Total Knee Arthroplasty Using Computed Tomography | 58th Annual Meeting of the Orthopaedic Research Society (ORS), San Francisco, CA, 2012 |
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Karl Ruben | Kugelpackungen in arbiträr geformten Volumina | Bachelor's thesis, Freie Universität Berlin, Norbert Lindow (Advisor), 2012 |
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Jens Kasten | Lagrangian feature extraction in two-dimensional unsteady flows | Doctoral thesis, Freie Universität Berlin, 2012 |
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Peter Deuflhard, Stefan Zachow | Mathematische Therapie- und Operationsplanung | pp. 89-90, Berliner Wirtschaftsgespräche e.V.: Berlin, 2012 |
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Klaus Hildebrandt, Christian Schulz, Christoph von Tycowicz, Konrad Polthier | Modal Shape Analysis beyond Laplacian | Computer Aided Geometric Design, 29(5), pp. 204-2018, 2012 |
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Jens Kasten, Ingrid Hotz, Hans-Christian Hege | On the Elusive Concept of Lagrangian Coherent Structures | Topological Methods in Data Analysis and Visualization II, pp. 207-220, Ronald Peikert, Helwig Hauser, Hamish Carr, Raphael Fuchs (Eds.), Springer, 2012 |
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Heiko Ramm, Max Kahnt, Stefan Zachow | Patientenspezifische Simulationsmodelle für die funktionelle Analyse von künstlichem Gelenkersatz | Computer Aided Medical Engineering (CaMe), 3(2), pp. 30-36, 2012 |
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David Bressler | Pattern Analysis for Flow Visualization | Master's thesis, Freie Universität Berlin, Ingrid Hotz (Advisor), 2012 |
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Norbert Lindow, Daniel Baum, Hans-Christian Hege | Perceptually Linear Parameter Variations | Computer Graphics Forum, 31(2), pp. 535-544, 2012 |
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Christoph Petz, Kai Pöthkow, Hans-Christian Hege | Probabilistic Local Features in Uncertain Vector Fields with Spatial Correlation | Computer Graphics Forum, 31(3), pp. 1045-1054, 2012 |
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Stefan Saevarsson, Gulshan Sharma, Shahram Amiri, Sigrun Montgomery, Heiko Ramm, Derek Lichti, Robert Lieck, Stefan Zachow, Carolyn Anglin | Radiological method for measuring patellofemoral tracking and tibiofemoral kinematics before and after total knee replacement | Bone and Joint Research, 1(10), pp. 263-271, 2012 |
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Tobias Tenbusch | Rendering von Partikeleffekten in einem Deferred Renderer | Master's thesis, Freie Universität Berlin, 2012 |
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Gulshan Sharma, Stefan Saevarsson, Shahram Amiri, Sigrun Montgomery, Heiko Ramm, Derek Lichti, Stefan Zachow, Carolyn Anglin | Sequential-Biplane Radiography for Measuring Pre and Post Total Knee Arthroplasty Kinematics | 58th Annual Meeting of the Orthopaedic Research Society (ORS), San Francisco, CA, 2012 |
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Tim Conrad, Alexander Benedikt Leichtle, Jean-Marc Nuoffer, Uta Ceglarek, Julia Kase, Helmut Witzigmann, Joachim Thiery, Georg Martin Fiedler | Serum amino acid profiles and their alterations in colorectal cancer | Metabolomics, 2012 |
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Martin Lange | Shadow Volumes für dynamische Dreiecksnetze auf CPU und GPU | Master's thesis, Freie Universität Berlin, 2012 |
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Philipp Preis | Sichtbarkeitsorientiertes Picking in Direct Volume Renderings mit Beleuchtungsmodellen | Master's thesis, Freie Universität Berlin, 2012 |
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Moritz Ehlke | Simulating X-ray images from deformable shape and intensity models on the GPU | Master's thesis, Technische Universität Berlin, Bernd Bickel, Bernd Mahr, Stefan Zachow (Advisors), 2012 |
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Pooja Gupta, Tim Conrad, Andreas Spötter, Norbert Reinsch, Kaspar Bienefeld | Simulating a base population in honey bee for molecular genetic studies | Genetics Selection Evolution, 2012 |
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Leonid Goubergrits, Jens Schaller, Ulrich Kertzscher, Nils van den Bruck, Kai Pöthkow, Christoph Petz, Hans-Christian Hege, Andreas Spuler | Statistical wall shear stress maps of ruptured and unruptured middle cerebral artery aneurysms | J. R. Soc. Interface, 9(69), pp. 677-688, 2012 |
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Vincent J. Dercksen, Robert Egger, Hans-Christian Hege, Marcel Oberlaender | Synaptic Connectivity in Anatomically Realistic Neural Networks: Modeling and Visual Analysis | Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), pp. 17-24, 2012 |
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Kai Pöthkow, Hans-Christian Hege | Uncertainty Propagation in DT-MRI Anisotropy Isosurface Extraction | New Developments in the Visualization and Processing of Tensor Fields, David Laidlaw, Anna Vilanova (Eds.), Springer: Berlin, pp. 209-225, 2012 |
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Olaf Paetsch, Daniel Baum, Karsten Ehrig, Dietmar Meinel, Steffen Prohaska | Vergleich automatischer 3D-Risserkennungsmethoden für die quantitative Analyse der Schadensentwicklung in Betonproben mit Computer-Tomographie | Tagungsband der DACH Jahrestagung 2012, 2012 |
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Hanspeter Pfister, Verena Kaynig, Charl Botha, Stefan Bruckner, Vincent J. Dercksen, Hans-Christian Hege, Jos Roerdink | Visualization in Connectomics | 2012arXiv |
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Visualization in Medicine and Life Sciences II | Lars Linsen, Hans Hagen, Bernd Hamann, Hans-Christian Hege (Eds.), Springer: Berlin, 2012, ISBN: 978-3-642-21607-7 |
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Jens Kasten, Ingrid Hotz, Bernd Noack, Hans-Christian Hege | Vortex Merge Graphs in Two-dimensional Unsteady Flow Fields | EuroVis – Short Papers, pp. 1-5, 2012 |
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Alexander Wiebel, Frans Vos, David Foerster, Hans-Christian Hege | WYSIWYP: What You See Is What You Pick | IEEE Transactions on Visualization and Computer Graphics, 18(12), pp. 2236-2244, 2012 |
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Marco Klindt, Daniel Baum, Steffen Prohaska, Hans-Christian Hege | iCon.text – a customizable iPad app for kiosk applications in museum exhibitions | EVA 2012 Berlin, pp. 150-155, 2012 (preprint available as ZIB-Report 13-07) |
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Jan-Martin Josten | Östrogenitäts-Approximation mittels physikochemischem Oberflächenvergleich | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012 |
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2011 |
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Doreen Streicher, Olaf Paetsch, Robert Seiler, Steffen Prohaska, Martin Krause, Christian Boller | 3-D-Visualisierung von Radar- und Ultraschallecho-Daten mit ZIBAmira | Proc. DGZfP-Jahrestagung 2011, 2011 |
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Jan Reininghaus, N. Kotava, David Günther, Jens Kasten, Hans Hagen, Ingrid Hotz | A Scale Space Based Persistence Measure for Critical Points in 2D Scalar Fields | Visualization and Computer Graphics, IEEE Transactions on, 17(12), pp. 2045-2052, 2011 |
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Andrea Kratz, Björn Meyer, Ingrid Hotz | A Visual Approach to Analysis of Stress Tensor Fields | Scientific Visualization: Interactions, Features, Metaphors, Vol.2, pp. 188-211, Hans Hagen (Ed.), Schloss Dagstuhl–Leibniz-Zentrum fuer Informatik: Dagstuhl, Germany, 2011 (preprint available as ) |
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Andrea Kratz, Jan Reininghaus, Markus Hadwiger, Ingrid Hotz | Adaptive Screen-Space Sampling for Volume Ray-Casting | ZIB-Report 11-04 |
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Matthias Bindernagel, Dagmar Kainmüller, Heiko Seim, Hans Lamecker, Stefan Zachow, Hans-Christian Hege | An Articulated Statistical Shape Model of the Human Knee | Bildverarbeitung für die Medizin 2011, pp. 59-63, 2011 |
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Nino Kettlitz | Anisotropes Sampling in der Tensorfeldvisualisierung | Master's thesis, Technische Universität Berlin (O. Hellwich) and ZIB (I. Hotz, A. Kratz), 2011 |
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Michelle Retzlaff | Brushing and Linking Methods by the Example of Tensor Visualization | Bachelor's thesis, Freie Universität Berlin, Institut für Informatik (H. Alt) und ZIB (I. Hotz, A. Kratz), 2011 |
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Jan Reininghaus, Ingrid Hotz | Combinatorial 2D Vector Field Topology Extraction and Simplification | Topological Methods in Data Analysis and Visualization, pp. 103-114, Valerio Pascucci, Xavier Tricoche, Hans Hagen, Julien Tierny (Eds.), Springer, 2011, ISBN: 978-3-642-15013-5 |
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Jan Reininghaus, Jens Kasten, Tino Weinkauf, Ingrid Hotz | Combinatorial Feature Flow Fields: Tracking Critical Points in Discrete Scalar Fields | ZIB-Report 11-02 |
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Karsten Ehrig, Jürgen Goebbels, Dietmar Meinel, Olaf Paetsch, Steffen Prohaska, Valentin Zobel | Comparison of Crack Detection Methods for Analyzing Damage Processes in Concrete with Computed Tomography | International Symposium on Digital Industrial Radiology and Computed Tomography, 2011 |
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Cornelia Auer, Ingrid Hotz | Complete Tensor Field Topology on 2D Triangulated Manifolds embedded in 3D | Computer Graphics Forum (EuroVis’11), pp. 831-840, 30(3 target), 2011 |
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Christoph von Tycowicz, Felix Kälberer, Konrad Polthier | Context-based Coding of Adaptive Multiresolution Meshes | Computer Graphics Forum, 30(8), pp. 2231-2245, 2011 |
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Alexander Wiebel, Hans-Christian Hege, Manon Ziech, Matthan Caan, Jaap Stoker, Frans Vos | DCE-MRI-oriented Volume Rendering for Monitoring of Crohn’s Disease. | BioVis 2011 Abstracts, 1st IEEE Symposium on Biological Data Visualization, 2011 |
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Thomas Hildebrandt | Das Konzept der Rhinorespiratorischen Homöostase – ein neuer theoretischer Ansatz für die Diskussion physiologischer und physikalischer Zusammenhänge bei der Nasenatmung | Doctoral thesis, Albert-Ludwigs-Universität Freiburg, Werner Heppt, Stefan Zachow (Advisors), 2011 |
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Ulrike Homberg, Daniel Baum, Steffen Prohaska | Describing and Analyzing the Dual Structures of Porous Media | Proc. 3D-Microstructure Meeting, Frank Mücklich, Philipp Slussallek, Katja Schladitz (Eds.), pp. 24-25, 2011 |
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Carl Martin Grewe, Hans Lamecker, Stefan Zachow | Digital morphometry: The Potential of Statistical Shape Models | Anthropologischer Anzeiger. Journal of Biological and Clinical Anthropology, pp. 506-506, 2011 |
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Andreas Günther, Hans Lamecker, Martin Weiser | Direct LDDMM of Discrete Currents with Adaptive Finite Elements | Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, pp. 1-14, X. Pennec, S. Joshi, M. Nielsen (Eds.), 2011 (preprint available as ZIB-Report 11-22) |
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Hans-Christian Hege, Jens Kasten, Ingrid Hotz | Distillation and Visualization of Spatiotemporal Structures in Turbulent Flow Fields | J. Phys., Vol.318, p. 062009, 2011 |
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Jaya Sreevalsan-Nair, Cornelia Auer, Bernd Hamann, Ingrid Hotz | Eigenvector-based Interpolation and Segmentation of 2D Tensor Fields | Topological Methods in Data Analysis and Visualization, pp. 139-150, Valerio Pascucci, Xavier Tricoche, Hans Hagen, Julien Tierny (Eds.), Springer, 2011, ISBN: 978-3-642-15013-5 |
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Antonia Wittmers | Ein Werkzeug zur Erzeugung konsistenter Netze auf triangulierten Oberflächen | Master's thesis, Freie Universität Berlin, Konrad Polthier, Hans Lamecker, Stefan Zachow, Ingrid Hotz (Advisors), 2011 |
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Dirk Andrae, Ingo Barth, Timm Bredtmann, Hans-Christian Hege, Jörn Manz, Falko Marquardt, Beate Paulus | Electronic Quantum Fluxes During Pericyclic Reactions Exemplified for the Cope Rearrangement of Semibullvalene | J. Phys. Chem. B, 115(18), pp. 5476-5483, 2011 |
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Jan Reininghaus, Christian Löwen, Ingrid Hotz | Fast Combinatorial Vector Field Topology | IEEE Trans. Computer Graphics and Visualization, 17(10), pp. 1433-1443, 2011 |
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Britta Weber, Marit Möller, Jean-Marc Verbavatz, Daniel Baum, Hans-Christian Hege, Steffen Prohaska | Fast Tracing of Microtubule Centerlines in Electron Tomograms | BioVis 2011 Abstracts, 1st IEEE Symposium on Biological Data Visualization, 2011 |
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Mathias Goldau, Alexander Wiebel, Nico Gorbach, Corina Melzer, Mario Hlawitschka, Gerik Scheuermann, Marc Tittgemeyer | Fiber Stippling: An Illustrative Rendering for Probabilistic Diffusion Tractography Combinatorial Vector Field Topology in 3 Dimensions | 1st IEEE Symposium on Biological Data Visualization, pp. 23-30, 2011 |
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Valentin Zobel, Jan Reininghaus, Ingrid Hotz | Generalized Heat Kernel Signature | Journal of WSCG, International Conference on Computer Graphics, Visualization and Computer Vision, pp. 93-100target, 2011 |
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Christoph Petz, Kilian Oberleithner, Moritz Sieber, Christian Nayeri, Oliver Paschereit, Israel Wygnanski, Bernd Noack, Hans-Christian Hege | Global Modes in a Swirling Jet Undergoing Vortex Breakdown | Physics of Fluids, Vol.23, p. 091102, 2011 |
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Alexander Wiebel, Stefan Koch, Gerik Scheuermann | Glyphs for Non-Linear Vector Field Singularities | Topological Methods in Data Analysis and Visualization II, pp. 177-190, Ronald Peikert, Helwig Hauser, Hamish Carr, Raphael Fuchs (Eds.), Springer: Berlin, 2011 |
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Sebastian Schuberth | High-Performance Tomographic Reconstruction using OpenCL | Master's thesis, Department of Mathematics and Computer Science, Freie Universität Berlin (Konrad Polthier) and ZIB (Christian Hege, Steffen Prohaska), 2011 |
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Marianne Krabi | Implementierung einer Methode zur automatischen Erkennung von Nervenzellkörpern in 3D Mikroskopbildern | Bachelor's thesis, Humboldt-Universität zu Berlin, Beate Meffert, Hans-Christian Hege, Vincent J. Dercksen (Advisors), 2011 |
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Andrea Kratz, Markus Hadwiger, Ingrid Hotz | Improved Visual Exploration and Hybrid Rendering of Stress Tensor Fields via Shape-Space Clustering. | Poster presentation at the IEEE VisWeek 2011, Providence, 2011 |
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Maximilien Renard | Improvement of Image Segmentation Based on Statistical Shape and Intensity Models | Master's thesis, Université libre de Bruxelles, Nadine Warzée, Olivier Debier, Hans Lamecker, Stefan Zachow (Advisors), 2011 |
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Klaus Hildebrandt, Christian Schulz, Christoph von Tycowicz, Konrad Polthier | Interactive surface modeling using modal analysis | ACM Transactions on Graphics, 30(5), pp. 119:1-119:11, 2011 (preprint available as ) |
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Paul Seidel | Interaktive Visualisierung und Filterung großer Volumendaten mittels Volumenrendering | Master's thesis, Universität Potsdam, Jürgen Döllner, Steffen Prohaska (Advisors), 2011 |
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Saevarsson SK, Sharma GB, Montgomery S, Ho KCT, Heiko Ramm, Robert Lieck, Stefan Zachow, Anglin C | Kinematic Comparison Between Gender Specific and Traditional Femoral Implants | Proceedings of the 11th Alberta Biomedical Engineering (BME) Conference (Poster), p. 80, 2011 |
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David Kleinfeld, Arjun Bharioke, Pablo Blinder, David Bock, Kevin Briggman, Dmitri Chklovskii, Winfried Denk, Moritz Helmstaedter, John Kaufhold, Wei-Chung Lee, Hanno Meyer, Kristina Micheva, Marcel Oberlaender, Steffen Prohaska, R. Reid, Stephen Smith, Shinya Takemura, Philbert Tsai, Bert Sakmann | Large-scale automated histology in the pursuit of connectomes | Journal of Neuroscience, 31(45), pp. 16125-16138, 2011 |
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Malte Clasen, Philip Paar, Steffen Prohaska | Level of Detail for Trees Using Clustered Ellipsoids | ZIB-Report 11-41 |
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Vincent J. Dercksen, Marcel Oberlaender, Bert Sakmann, Hans-Christian Hege | Light Microscopy-Based Reconstruction and Interactive Structural Analysis of Cortical Neural Networks | BioVis 2011 Abstracts, 1st IEEE Symposium on Biological Data Visualization, 2011 |
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David Günther, Jan Reininghaus, Hubert Wagner, Ingrid Hotz | Memory-Efficient Computation of Persistent Homology for 3D Images using Discrete Morse Theory | Proc. Sibgrapi – Conference on Graphics, Patterns and Images, 2011 |
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René Hoffmann, Stefan Zachow | Non-invasive approach to shed new light on the buoyancy business of chambered cephalopods (Mollusca) | Proc. of the Intl. Assoc. for Mathematical Geosciences, Salzburg, pp. 1-11, 2011 |
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Jens Kasten, Ingrid Hotz, Bernd Noack, Hans-Christian Hege | On the Extraction of Long-living Features in Unsteady Fluid Flows | Topological Methods in Data Analysis and Visualization, pp. 115-126, Valerio Pascucci, Xavier Tricoche, Hans Hagen, Julien Tierny (Eds.), Springer: Berlin, 2011, ISBN: 978-3-642-15013-5 |
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Zully Ritter, Steffen Prohaska, R. Brand, A. Friedmann, Hans-Christian Hege, Jürgen Goebbels, Dieter Felsenberg | Osteocytes number and volume in osteoporotic and in healthy bone biopsies analysed using Synchrotron CT: a pilot study | Proc. ISB 2011, 2011 |
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Andrea Kratz, Nino Kettlitz, Ingrid Hotz | Particle-Based Anisotropic Sampling for Two-Dimensional Tensor Field Visualization | Vision Modeling and Visualization (VMV’11), pp. 145-152, 2011 |
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Alexander Wiebel, Frans M. Vos, Hans-Christian Hege | Perception-Oriented Picking of Structures in Direct Volumetric Renderings | ZIB-Report 11-45 |
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Kai Pöthkow, Hans-Christian Hege | Positional Uncertainty of Isocontours: Condition Analysis and Probabilistic Measures | IEEE Transactions on Visualization and Computer Graphics, 17(10), pp. 1393-1406, 2011 |
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Kai Pöthkow, Britta Weber, Hans-Christian Hege | Probabilistic Marching Cubes | Computer Graphics Forum, 30(3), pp. 931-940, 2011 |
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Max Kahnt, Francis Galloway, Heiko Seim, Hans Lamecker, Mark Taylor, Stefan Zachow | Robust and Intuitive Meshing of Bone-Implant Compounds | CURAC, pp. 71-74, 2011 |
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Edmond Boyer, Alexander Bronstein, Michael Bronstein, Benjamin Bustos, Tal Darom, Radu Horaud, Ingrid Hotz, Yosi Keller, Johannes Keustermans, Artiom Kovnatsky, Roee Litman, Jan Reininghaus, Ivan Sipiran, Dirk Smeets, Paul Suetens, Dirk Vandermeulen, Andrei Zaharescu, Valentin Zobel | SHREC 2011: robust feature detection and description benchmark | Proc. Eurographics 2011 Workshop on 3D Object Retrieval (3DOR’11), pp. 71-78, 2011 |
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Stefan Lang, Vincent J. Dercksen, Bert Sakmann, Marcel Oberlaender | Simulation of signal flow in 3D reconstructions of an anatomically realistic neural network in rat vibrissal cortex | Neural Networks, 24(9), pp. 998-1011, 2011 |
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Jens von Berg, Jalda Dworzak, Tobias Klinder, Dirk Manke, Hans Lamecker, Stefan Zachow, Cristian Lorenz | Temporal Subtraction of Chest Radiographs Compensating Pose Differences | SPIE Medical Imaging, 2011 |
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Kilian Oberleithner, Moritz Sieber, Christian Nayeri, Christian Paschereit, Christoph Petz, Hans-Christian Hege, Bernd Noack, Israel J. Wygnanski | Three-dimensional Coherent Structures of the Swirling Jet Undergoing Vortex breakdown: Stability Analysis and Empirical Mode Construction | J. Fluid Mech., Vol.679, pp. 383-414, 2011 |
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Thomas Torsney-Weir, Ahmed Saad, Torsten Möller, Hans-Christian Hege, Britta Weber, Jean-Marc Verbavatz | Tuner: Principled Parameter Finding for Image Segmentation Algorithms Using Visual Response Surface Exploration | IEEE Trans. Vis. Comput. Graph., 17(12), pp. 1892-1901, 2011 |
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Jens Kasten, Jan Reininghaus, Ingrid Hotz, Hans-Christian Hege | Two-Dimensional Time-Dependent Vortex Regions Based on the Acceleration Magnitude | IEEE Transactions on Visualization and Computer Graphics, 17(12), pp. 2080-2087target, 2011 |
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Hans-Christian Hege, Michael Koppitz, Falko Marquardt, Chris McDonald, Christopher Mielack | Visual Analysis of Quantum Physics Data | Quantum Dynamic Imaging, pp. 71-87, 2011 |
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Norbert Lindow, Daniel Baum, Hans-Christian Hege | Voronoi-Based Extraction and Visualization of Molecular Paths | IEEE Transactions on Visualization and Computer Graphics, 17(12), pp. 2025-2034, 2011 |
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2010 |
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Andrea Kratz, Björn Meyer, Ingrid Hotz | A Visual Approach to Analysis of Stress Tensor Fields | ZIB-Report 10-26 (Appeared in: Scientific Visualization: Interactions, Features, Metaphors, Dagstuhl Follow-Ups, 2, 2011, pp. 188-211) |
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Norbert Lindow, Daniel Baum, Steffen Prohaska, Hans-Christian Hege | Accelerated Visualization of Dynamic Molecular Surfaces | Comput. Graph. Forum, Vol.29, pp. 943-952, 2010 |
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Hans Lamecker, Xavier Pennec | Atlas to Image-with-Tumor Registration based on Demons and Deformation Inpainting | Proc. MICCAI Workshop on Computational Imaging Biomarkers for Tumors - From Qualitative to Quantitative (CIBT’2010), 2010 |
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Hans Lamecker, Dagmar Kainmüller, Heiko Seim, Stefan Zachow | Automatische 3D Rekonstruktion des Unterkiefers und der Mandibulärnerven auf Basis dentaler Bildgebung | Proc. BMT, Biomed Tech, pp. 35-36, Vol.55 (Suppl. 1), 2010 |
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Stefan Zachow, Horst Hahn, Thomas Lange | Computerassistierte Chirugieplanung | Computerassistierte Chirurgie, Peter Schlag, Sebastian Eulenstein, Thomas Lange (Eds.), Elsevier, pp. 119-149, 2010 |
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Martin Weiser, Stefan Zachow, Peter Deuflhard | Craniofacial Surgery Planning Based on Virtual Patient Models | it - Information Technology, 52(5), pp. 258-263, 2010 |
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Norbert Lindow | Dynamische Moleküloberflächen | Master's thesis, Technische Universität Berlin, Daniel Baum, Marc Alexa, Hans-Christian Hege (Advisors), 2010 |
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Anja Kuß, Maria Gensel, Björn Meyer, Vincent J. Dercksen, Steffen Prohaska | Effective Techniques to Visualize Filament-Surface Relationships | Comput. Graph. Forum, Vol.29, pp. 1003-1012, 2010 |
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Klaus Hildebrandt, Christian Schulz, Christoph von Tycowicz, Konrad Polthier | Eigenmodes of Surface Energies for Shape Analysis | Advances in Geometric Modeling and Processing (Proceedings of Geometric Modeling and Processing 2010), Vol.6130, pp. 296-314, Bernard Mourrain, Scott Schaefer, Guoliang Xu (Eds.), Springer Berlin / Heidelberg, 2010 |
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Hans-Christian Hege, Jörn Manz, Falko Marquardt, Beate Paulus, Axel Schild | Electron Flux during Pericyclic Reactions in the Tunneling Limit: Quantum Simulation for Cyclooctatetraene | Chem. Phys, 376(1-3), pp. 46-55, 2010 |
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Timm Bredtmann, Falko Marquardt, Dirk Andrae, Ingo Barth, Hans-Christian Hege, Jörn Manz, Beate Paulus | Electronic and Nuclear Fluxes During Pericyclic Reactions: Quantum Simulations for the Cope Rearrangement of Semibullvalene | CSTC 2010 - 17th Canadian Symposium on Theoretical Chemistry, July 25-30, 2010, Edmonton, Alberta, Canada, 2010 |
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Timm Bredtmann, Falko Marquardt, Dirk Andrae, Ingo Barth, Hans-Christian Hege, Kunihito Hoki, Anatole Kenfack, Hirohiko Kono, Jörn Manz, Beate Paulus | Electronic and Nuclear Fluxes during Pericyclic Reactions: Quantum Simulations for the Cope Rearrangement of Semibullvalene | International Symposium on Theoretical and Computational Chemistry, 28 Feb – 2 March, 2010, Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany, 2010 |
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Jens Kasten, Tino Weinkauf, Christoph Petz, Ingrid Hotz, Bernd R. Noack, Hans-Christian Hege | Extraction of Coherent Structures from Natural and Actuated Flows | Active Flow Control II, Springer, Berlin, pp. 373-387, 2010, ISBN: 978-3-642-11734-3 |
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David Günther, Patrick C. McGuire, Sebastian Walter, Tino Weinkauf, Hans-Christian Hege | Extraction of Valley Networks in Mars Elevation Maps | Proc. European Planetary Science Congress, pp. EPSC2010-216, Vol.5, 2010 |
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Jens Kasten, Jan Reininghaus, Kilian Oberleithner, Ingrid Hotz, Bernd Noack, Hans-Christian Hege | Flow over a Cavity – Evolution of the Vortex Skeleton | Visualization at 28th Annual Gallery of Fluid Motion exhibit, held at the 63th Annual Meeting of the American Physical Society, Division of Fluid Dynamics (Long Beach, CA, USA, November 21-23, 2010)., 2010 |
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Hans-Christian Hege, David Laidlaw, Raghu Machiraju | Guest Editor's Introduction: Special Section on Volume Graphics and Point-Based Graphics | IEEE Trans. Vis. Comput. Graph., 16(4), pp. 531-532, 2010 |
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Richard Binner, Ulrike Homberg, Steffen Prohaska, Ute Kalbe, Karl Josef Witt | Identification of Descriptive Parameters of the Soil Pore Structure using Experiments and CT Data | Proceedings of the 5th International Conference on Scour and Erosion (ICSE-5), pp. 397-407, 2010 |
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Malte Clasen, Steffen Prohaska | Image-Error-Based Level of Detail for Landscape Visualization | Proc. VMV 2010, pp. 267-274, 2010 |
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Dagmar Kainmüller, Hans Lamecker, Heiko Seim, Stefan Zachow, Hans-Christian Hege | Improving Deformable Surface Meshes through Omni-directional Displacements and MRFs | Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), Tianzi Navab, Josien P. W. Pluim, Max Viergever (Eds.), pp. 227-234, Vol.6361, Lecture Notes in Computer Science, 2010 |
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Leonid Goubergrits, Bente Thamsen, André Berthe, Jens Poethke, Ulrich Kertzscher, Klaus Affeld, Christoph Petz, Hans-Christian Hege, Heinrich Hoch, Andreas Spuler | In Vitro Study of Near-Wall Flow in a Cerebral Aneurysm Model with and without Coils | American Journal of Neuroradiology, Vol.31:8, pp. 1521-1528, 2010 |
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Anatole Kenfack, Falko Marquardt, Gennadij K. Paramonov, Ingo Barth, Caroline Lasser, Beate Paulus | Initial-state dependence of coupled electronic and nuclear fluxes in molecules | Phys. Rev. A, 81(5), p. 052502, 2010 |
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Jens Kasten, Christoph Petz, Ingrid Hotz, Hans-Christian Hege, Bernd Noack, Gilead Tadmor | Lagrangian Feature Extraction of the Cylinder Wake | Physics of Fluids, 22(9), p. 091108, 2010 |
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Heiko Seim, Dagmar Kainmüller, Hans Lamecker, Matthias Bindernagel, Jana Malinowski, Stefan Zachow | Model-based Auto-Segmentation of Knee Bones and Cartilage in MRI Data | Proc. MICCAI Workshop Medical Image Analysis for the Clinic, B. v. Ginneken (Ed.), pp. 215-223, 2010 |
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Arnaud Lacarelle, Jonas P. Moeck, Christian Paschereit, Gregor Gelbert, Rudibert King, Dirk M. Luchtenburg, Bernd R. Noack, Jens Kasten, Hans-Christian Hege | Modeling a Fuel/Air Mixing to Control the Pressure Pulsations and NOx Emissions in a Lean Premixed Combustor | Active Flow Control II, Vol.108, pp. 307-321, 2010 |
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Stefan Zachow, Kim Kubiack, Jana Malinowski, Hans Lamecker, Harald Essig, Nils-Claudius Gellrich | Modellgestützte chirurgische Rekonstruktion komplexer Mittelgesichtsfrakturen | Proc. BMT, Biomed Tech 2010, pp. 107-108, Vol.55 (Suppl 1), 2010 |
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Peter Deuflhard, Olaf Dössel, Alfred Louis, Stefan Zachow | More Mathematics into Medicine! | Production Factor Mathematics, Springer, pp. 357-378, 2010 |
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Jan Nietfeld | Oberflächenrekonstruktion aus nicht-parallelen Konturdaten | Master's thesis, Technische Universität Berlin, Marc Alexa, Hans-Christian Hege, Steffen Prohaska (Advisors), 2010 |
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Alexander Ziegler, Malte Ogurreck, Thomas Steinke, Felix Beckmann, Steffen Prohaska, Andreas Ziegler | Opportunities and challenges for digital morphology | Biology Direct, 5(1), p. 45, 2010 |
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Kilian Oberleithner, Moritz Sieber, Christian Nayeri, Christian Paschereit, Christoph Petz, Hans-Christian Hege, Bernd Noack, Israel Wygnanski | Self Excited Oscillations in Swirling Jets: Stability Analysis and Empirical Mode Construction | Bulletin of the American Physical Society, 55(16), p. GE.00008, 2010 |
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Valentin Zobel | Spectral Analysis of the Hodge Laplacian on Discrete Manifolds | Master's thesis, Technische Universität Berlin (J. M. Sullivan) and ZIB (I. Hotz), 2010 |
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Jan Reininghaus, David Günther, Ingrid Hotz, Steffen Prohaska, Hans-Christian Hege | TADD: A Computational Framework for Data Analysis Using Discrete Morse Theory | Mathematical Software - ICMS 2010, pp. 198-208, Vol.6327, Lecture Notes in Computer Science, 2010 |
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Ingrid Hotz, Jaya Sreevalsan-Nair, Bernd Hamann | Tensor Field Reconstruction Based on Eigenvector and Eigenvalue Interpolation | Scientific Visualization: Advanced Concepts, Hans Hagen (Ed.), Schloss Dagstuhl Leibniz-Zentrum fuer Informatik, pp. 110-123, 2010, ISBN: 978-3-939897-19-4 |
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Jürgen Rybak, Anja Kuß, Hans Lamecker, Stefan Zachow, Hans-Christian Hege, Matthias Lienhard, Jochen Singer, Kerstin Neubert, Randolf Menzel | The Digital Bee Brain: Integrating and Managing Neurons in a Common 3D Reference System | Front. Syst. Neurosci., 4(30), 2010 |
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Mathias Otto, Tobias Germer, Hans-Christian Hege, Holger Theisel | Uncertain 2D Vector Field Topology | Comput. Graph. Forum, Vol.29, pp. 347-356, 2010 |
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VideoMath | Hans-Christian Hege (Ed.), Springer-Verlag, 2010 |
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Visualization and Mathematics | Hans-Christian Hege (Ed.), Springer-Verlag, 2010 (preprint available as ) |
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Volume Graphics and Point-Based Graphics | Hans-Christian Hege, Raghu Machiraju, David Laidlaw (Eds.), 2010 |
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Cornelia Auer, Jaya Sreevalsan-Nair, Valentin Zobel, Ingrid Hotz | 2D Tensor Field Segmentation | Scientific Visualization: Interactions, Features, Metaphors, Hans Hagen (Ed.), Schloss Dagstuhl–Leibniz-Zentrum für Informatik, pp. 17-35, 2009 |
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Jalda Dworzak, Hans Lamecker, Jens von Berg, Tobias Klinder, Cristian Lorenz, Dagmar Kainmüller, Heiko Seim, Hans-Christian Hege, Stefan Zachow | 3D Reconstruction of the Human Rib Cage from 2D Projection Images using a Statistical Shape Model | Int. J. Comput. Assist. Radiol. Surg., 5(2), pp. 111-124, 2009 |
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Marcel Oberlaender, Randy M. Bruno, Christiaan P. J. de Kock, Hanno Meyer, Vincent J. Dercksen, Bert Sakmann | 3D distribution and sub-cellular organization of thalamocortical VPM synapses for individual excitatory neuronal cell types in rat barrel cortex | Conference Abstract No. 173.19/Y35, 39th Annual Meeting of the Society for Neuroscience (SfN), 2009 |
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Marcel Oberlaender, Vincent J. Dercksen, Stefan Lang, Bert Sakmann | 3D mapping of synaptic connections within “in silico” microcircuits of full compartmental neurons in extended networks on the example of VPM axons projecting into S1 of rats. | Conference Abstract, Neuroinformatics, 2009 |
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Heiko Seim, Dagmar Kainmüller, Hans Lamecker, Stefan Zachow | A System for Unsupervised Extraction of Orthopaedic Parameters from CT Data | GI Workshop Softwareassistenten - Computerunterstützung für die medizinische Diagnose und Therapieplanung, pp. 1328-1337, GI-Edition Lecture Notes in Informatics, 2009 |
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Hans Lamecker, Tomaso Mansi, Jatin Relan, Florence Billet, Maxime Sermesant, Nicholas Ayache, Hervé Delingette | Adaptive Tetrahedral Meshing for Personalized Cardiac Simulations | Proc. MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling (CI2BM), pp. 149-158, 2009 |
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Dagmar Kainmüller, Hans Lamecker, Stefan Zachow, Hans-Christian Hege | An Articulated Statistical Shape Model for Accurate Hip Joint Segmentation | EBMC 2009. Int. Conf. of the IEEE Eng. in Med. and Biol. Society (EMBC), pp. 6345-6351, 2009 |
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Marcel Oberlaender, Vincent J. Dercksen, Robert Egger, Maria Gensel, Bert Sakmann, Hans-Christian Hege | Automated three-dimensional detection and counting of neuron somata | Journal of Neuroscience Methods, 180(1), pp. 147-160, 2009 |
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Heiko Seim, Dagmar Kainmüller, Markus O. Heller, Stefan Zachow, Hans-Christian Hege | Automatic Extraction of Anatomical Landmarks from Medical Image Data: An Evaluation of Different Methods | Proc. of IEEE Int. Symposium on Biomedical Imaging (ISBI), pp. 538-541, 2009 |
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Dagmar Kainmüller, Hans Lamecker, Heiko Seim, Max Zinser, Stefan Zachow | Automatic Extraction of Mandibular Nerve and Bone from Cone-Beam CT Data | Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), Guang-Zhong Yang, David J. Hawkes, Daniel Rueckert, J. Alison Noble, Chris J. Taylor (Eds.), pp. 76-83, 2009 |
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Vincent J. Dercksen, Britta Weber, David Günther, Marcel Oberlaender, Steffen Prohaska, Hans-Christian Hege | Automatic alignment of stacks of filament data | Proc. IEEE International Symposium on Biomedical Imaging, pp. 971-974, 2009 |
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Horst Bischof, Anne-Mareike Rau, Daniela S. Raicu | Comparison and Evaluation of Methods for Liver Segmentation from CT Datasets | IEEE Transactions on Medical Imaging, Vol.28(8), pp. 1251-1265, 2009 |
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Stefan Zachow, Hans Lamecker, Maja Zöckler, Ernst Haberl | Computergestützte Planung zur chirurgischen Korrektur von frühkindlichen Schädelfehlbildungen (Craniosynostosen) | Face 02/09, Int. Mag. of Orofacial Esthetics, Oemus Journale Leipzig, pp. 48-53, 2009 |
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Ingo Barth, Hans-Christian Hege, Hiroshi Ikeda, Anatole Kenfack, Michael Koppitz, Jörn Manz, Falko Marquardt, Guennaddi K. Paramonov | Concerted Quantum Effects of Electronic and Nuclear Fluxes in Molecules | Chem. Phys. Lett., 481(1-3), pp. 118-123, 2009 |
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Olivier Semar, Richard Binner, Ulrike Homberg, Ute Kalbe, Tobias Mehlhorn, Steffen Prohaska, Volker Slowik, Karl Josef Witt | Conditions for Suffosive Erosion Phemomena in Soils – Concept and Approach | Workshop Internal Erosion, pp. 29-35, Vol.21, Schriftenreihe Geotechnik, 2009 |
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Leonid Goubergrits, Ernst Wellnhofer, Ulrich Kertzscher, Klaus Affeld, Christoph Petz, Hans-Christian Hege | Coronary Artery WSS Profiling Using a Geometry Reconstruction Based on Biplane Angiography | Annals of Biomedical Engineering, 37(4), pp. 682-691, 2009 |
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Ulrike Homberg, Richard Binner, Steffen Prohaska, Vincent J. Dercksen, Anja Kuß, Ute Kalbe | Determining Geometric Grain Structure from X-Ray Micro-Tomograms of Gradated Soil | Workshop Internal Erosion, pp. 37-52, Vol.21, Schriftenreihe Geotechnik, 2009 |
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Olufemi Rosanwo, Christoph Petz, Steffen Prohaska, Ingrid Hotz, Hans-Christian Hege | Dual Streamline Seeding | Proceedings of the IEEE Pacific Visualization Symposium, Peter Eades, Thomas Ertl, Han-Wei Shen (Eds.), pp. 9-16, 2009 (preprint available as ZIB-Report 08-49) |
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Hans-Christian Hege, Ingrid Hotz, Tamara Munzner | Euro Vis 2009 - Eurographics/IEEE-VGTC Symposium on Visualization | Comput. Graphics. Forum, Vol.28, 2009 |
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EuroVis 2009 | Hans-Christian Hege, Ingrid Hotz, Tamara Munzner (Eds.), Blackwell Publishing, 2009 |
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Jan Sahner | Extraction of Vortex Structures in 3D Flow Fields | Doctoral thesis, Otto-von-Guericke-Universität Magdeburg, 2009 |
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Bertram Wölk | Generierung hybrider Gitter für die Strömungssimulation auf komplexen anatomischen Geometrien | Master's thesis, Technische Universität Berlin, Marc Alexa, Stefan Zachow (Advisors), 2009 |
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Charlotte Winkler | Graph-Cut Segmentation for 3D Single-Plane Illumination Microscopy Images | Master's thesis, Freie Universität Berlin, Department of Mathematics and Computer Science, Jürgen Braun, Steffen Prohaska (Advisors), 2009 |
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Christoph Petz, Jens Kasten, Steffen Prohaska, Hans-Christian Hege | Hierarchical Vortex Regions in Swirling Flow | Computer Graphics Forum, 28(3), pp. 863-870, 2009 |
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Olufemi Rosanwo | Interactive Multi-Object Segmentation with Max-Tree Filtering | Master's thesis, Freie Universität Berlin, 2009 |
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Anja Kuß, Hans-Christian Hege | Knowledge Representation for Digital Atlases | Conference Abstracts: Workshop of the Working Group 'Ontologies in Biomedicine and the Life Science', 2009 |
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Jens Kasten, Christoph Petz, Ingrid Hotz, Bernd R. Noack, Hans-Christian Hege | Localized Finite-time Lyapunov Exponent for Unsteady Flow Analysis | Vision Modeling and Visualization, Marcus Magnor, Bodo Rosenhahn, Holger Theisel (Eds.), pp. 265-274, Vol.1, 2009, ISBN: 978-3-9804874-8-1 |
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Felix Kälberer, Christoph von Tycowicz, Konrad Polthier | Lossless Compression of Adaptive Multiresolution Meshes | XXII Brazilian Symposium on Computer Graphics and Image Processing, pp. 80-87, 2009 |
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Tobias Mehlhorn, Steffen Prohaska, Ulrike Homberg, Volker Slowik | Modelling and Analysis of Particle and Pore Structures in Soils | Workshop Internal Erosion, pp. 53-60, Vol.21, Schriftenreihe Geotechnik, 2009 |
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Dagmar Kainmüller, Hans Lamecker, Stefan Zachow | Multi-object Segmentation with Coupled Deformable Models | Annals of the British Machine Vision Association (BMVA), Vol.5, pp. 1-10, 2009 |
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Dagmar Kainmüller, Hans Lamecker, Heiko Seim, Stefan Zachow | Multi-object segmentation of head bones | MIDAS Journal, 2009 |
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Christian Löwen | Parallele Berechnung kombinatorischer Vektorfelder mit CUDA | Master's thesis, Fachhochschule Südwestfalen, Fachbereich Informatik und Naturwissenschaften (F. Mehner) und ZIB (I. Hotz), 2009 |
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Kuangyu Shi, Holger Theisel, Helwig Hauser, Tino Weinkauf, Hans-Christian Hege, Hans-Peter Seidel | Path Line Attributes - an Information Visualization Approach to Analyzing the Dynamic Behavior of 3D Time-Dependent Flow Fields | Topology-Based Methods in Visualization II, pp. 75-88, Mathematics and Visualization, 2009 |
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Dworzak Jalda | Reconstruction of the Human Rib Cage from 2D Projection Images using a Statistical Shape Model | Master's thesis, Technische Universität Berlin, Olaf Hellwich, Hans Lamecker (Advisors), 2009 |
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Tino Weinkauf, David Günther | Separatrix Persistence: Extraction of Salient Edges on Surfaces Using Topological Methods | Computer Graphics Forum (Proc. SGP’09), 28(5), pp. 1519-1528, 2009 |
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Tobias Heimann, François Chung, Hans Lamecker, Hervé Delingette | Subject-Specific Ligament Models: Towards Real-Time Simulation of the Knee Joint | Proc. Computational Biomechanics for Medicine IV Workshop, pp. 107-119, 2009 |
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Nils van den Bruck | Techniken zur Artefaktreduktion für GPU-basiertes Ray Casting | Bachelor's thesis, Freie Universität Berlin, Institut für Informatik (I. Hotz) und ZIB (A. Kratz), 2009 |
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Jürgen Rybak, Anja Kuß, Wolfgang Holler, Robert Brandt, Hans-Christian Hege, Randolf Menzel | The HoneyBee Standard Brain (HSB) - a versatile atlas tool for integrating data and data exchange in the neuroscience community | BMC Neuroscience, Vol.10 (Suppl 1):P1, 2009 |
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Topology-based Methods in Visualization II | Gerik Scheuermann, Hans-Christian Hege, Konrad Polthier (Eds.), Springer, 2009, ISBN: 978-3-540-88605-1 |
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Anja Kuß, Steffen Prohaska, Jürgen Rybak | Using Ontologies for the Visualization of Hierarchical Neuroanatomical Structures | Frontiers in Neuroinformatics. Conference Abstract: 2nd INCF Congress of Neuroinformatics, 2009 |
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Vincent J. Dercksen, Maria Gensel, Anja Kuß | Visual Accentuation of Spatial Relationships between Filamentous and Voluminous Surface Structures | Conference Abstract, Eurographics / IEEE Symposium on Visualization, 2009 |
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Stefan Zachow, Philipp Muigg, Thomas Hildebrandt, Helmut Doleisch, Hans-Christian Hege | Visual Exploration of Nasal Airflow | IEEE Transactions on Visualization and Computer Graphics, 15(8), pp. 1407-1414, 2009 |
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Maria Gensel | Visualisierungsmethoden zur Verdeutlichung der räumlichen Beziehungen zwischen linien- und flächenartigen Strukturen am Beispiel neurobiologischer Daten | Master's thesis, Freie Universität Berlin, Helmut Alt, Hans-Christian Hege (Advisors), 2009 |
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Leonid Goubergrits, Sarah Weber, Christoph Petz, Andreas Spuler, Jens Pöthke, André Berthe, Hans-Christian Hege | Wall-PIV as a Near Wall Flow Validation Tool for CFD | Journal of Visualization, 12(3), pp. 241-250, 2009 |
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2008 |
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Leonid Goubergrits, Jens Pöthke, Christoph Petz, Hans-Christian Hege, Andreas Spuler, Ulrich Kertzscher | 3D Bildgebung von zerebralen Aneurysmen | Bildverarbeitung für die Medizin, pp. 153-157, 2008 |
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Michael Zilske, Hans Lamecker, Stefan Zachow | Adaptive Remeshing of Non-Manifold Surfaces | Eurographics 2008 Annex to the Conf. Proc., pp. 207-211, 2008 (preprint available as ZIB-Report 07-01) |
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Michael Zilske | Adaptives Remeshing von nicht-mannigfaltigen Dreiecksnetzen | Master's thesis, Freie Universität Berlin, Konrad Polthier, Hans Lamecker, Stefan Zachow (Advisors), 2008 |
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Johannes Schmidt-Ehrenberg | Analysis and Visualization of Molecular Conformations | Doctoral thesis, Freie Universität Berlin, Fachbereich Mathematik und Informatik (P. Deuflhard), Der Andere Verlag, Tönning, 2008 |
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Robert S. Laramee, Gordon Erlebacher, Christoph Garth, Tobias Schafhitzel, Holger Theisel, Xavier Tricoche, Tino Weinkauf, Daniel Weiskopf | Applications of Texture-Based Flow Visualization | Engineering Applications of Computational Fluid Mechanics, 2(3), pp. 264-274, 2008 |
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Matthias Lienhard | Aufbau und Analyse eines statistischen Formmodells des Gehirns der Honigbiene Apis Mellifera | Bachelor's thesis, Freie Universität Berlin, Fachbereich Informatik (R. Menzel) und ZIB (S. Zachow), Randolf Menzel, Jürgen Rybak, Hans Lamecker, Stefan Zachow (Advisors), 2008 |
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Heiko Seim, Dagmar Kainmüller, Markus O. Heller, Hans Lamecker, Stefan Zachow, Hans-Christian Hege | Automatic Segmentation of the Pelvic Bones from CT Data Based on a Statistical Shape Model | Eurographics Workshop on Visual Computing for Biomedicine (VCBM), pp. 93-100, 2008 |
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Moritz Wade | Automatic Textbook-Like Layout of Biological Networks | Master's thesis, Free University Berlin, 2008 |
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Jana Dornheim, Silvia Born, Stefan Zachow, Michael Gessat, Daniela Wellein, Gero Strauß, Bernhard Preim, Dirk Bartz | Bildanalyse, Visualisierung und Modellerstellung für die Implantatplanung im Mittelohr | Proc. of Simulation and Visualization 2008, Helwig Hauser (Ed.), pp. 139-154, 2008 |
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Alexander Steinmann, Peter Bartsch, Stefan Zachow, Thomas Hildebrandt | Breathing Easily: Simulation of airflow in human noses can become a useful rhinosurgery planning tool | ANSYS Advantage, Vol.Vol. II, No. 1, pp. 30-31, 2008 |
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Leonid Goubergrits, Ulrich Kertzscher, Bastian Schöneberg, Ernst Wellnhofer, Christoph Petz | CFD analysis in an anatomically realistic coronary artery model based on non-invasive 3D imaging | Int. J. Cardiovasc. Imaging, Vol.24(4), pp. 411-421, 2008 |
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Gerd Diederichs, Heiko Seim, Henning Meyer, Ahi Issever, Thomas M. Link, Ralf J. Schröder, Markus Scheibel | CT-based patient-specific modeling of glenoid rim defects: A feasibility study | AJR Am J Roentgenol, 191(5), pp. 1406-1411, 2008 |
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Stefan Zachow, Peter Deuflhard | Computergestützte Planung in der kraniofazialen Chirurgie | Face 01/08, Int. Mag. of Orofacial Esthetics, pp. 43-49, 2008 |
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Max Wardetzky | Convergence of the Cotan formula - an overview | Discrete Differential Geometry, Alexander I. Bobenko, John Sullivan, Günter Ziegler (Eds.), Birkhäuser Basel, pp. 275-286, 2008 |
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Dagmar Kainmüller, Hans Lamecker, Stefan Zachow, Hans-Christian Hege | Coupling Deformable Models for Multi-object Segmentation | Proc. Int. Symp. on Computational Models for Biomedical Simulation (ISBMS), pp. 69-78, Springer LNCS 5104, 2008 |
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Jochen Singer | Entwicklung einer Anpassungsstrategie zur Autosegmentierung des Gehirns der Honigbiene Apis mellifera mittels eines statistischen Formmodells | Bachelor's thesis, Freie Universität Berlin, Fachbereich Informatik (R. Menzel) und ZIB (S. Zachow), Randolf Menzel, Jürgen Rybak, Hans Lamecker, Stefan Zachow (Advisors), 2008 |
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Tino Weinkauf | Extraction of Topological Structures in 2D and 3D Vector Fields | Doctoral thesis, Zuse Institute Berlin and Otto-von-Guericke-Universität Magdeburg, Fakultät für Informatik, 2008 |
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Jan Sahner, Britta Weber, Hans Lamecker, Steffen Prohaska | Extraction of feature Lines on surface meshes based on discrete Morse theory | Computer Graphics Forum, 27(3), pp. 735-742, 2008 |
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Tino Weinkauf, Jan Sahner, Bert Günther, Holger Theisel, Hans-Christian Hege, Frank Thiele | Feature-based Analysis of a Multi-Parameter Flow Simulation | Proc. of 19th Simulation and Visualization Conference (SimVis 2008), pp. 237-251, 2008 |
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Kuangyu Shi, Holger Theisel, Tino Weinkauf, Hans-Christian Hege, Hans-Peter Seidel | Finite-Time Transport Structures of Flow Fields | Proc. IEEE Pacific Visualization 2008, pp. 63-70, 2008 |
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Mathias Neugebauer, Gabor Janiga, Stefan Zachow, Özlem Krischek, Bernhard Preim | Generierung qualitativ hochwertiger Modelle für die Simulation von Blutfluss in zerebralen Aneurysmen | Proc. of Simulation and Visualization 2008, Helwig Hauser (Ed.), pp. 221-235, 2008 |
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Jens Poethke, Leonid Goubergrits, Ulrich Kertzscher, Andreas Spuler, Christoph Petz, Hans-Christian Hege | Impact of imaging modality for analysis of a cerebral aneurysm: Comparison between CT, MRI and 3DRA | Proceedings of the 4th European Conference of the International Federation for Medical and Biological Engineering, Pascal Jos Vander Sloten, Jens Haueisen (Eds.), pp. 1889-1893, 2008 |
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Philip Paar, Katy Appleton, Malte Clasen, Maria Gensel, Simon Jude, Andrew Lovett | Interactive Visual Simulation of Coastal Landscape Change | ISDE Summit, 2008 |
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MathFilm Festival 2008 | Konrad Polthier, Martin Aigner, Tom M. Apostol, Michele Emmer, Hans-Christian Hege, Ulrich Weinberg (Eds.), 2008 |
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Christoph von Tycowicz, Jörn Loviscach | Measuring and Enhancing the Legibility of GPU-rendered Text | Eurographics 2008 Short Papers, pp. 45-48, 2008 |
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Peter Deuflhard, Olaf Dössel, Alfred Louis, Stefan Zachow | Mehr Mathematik wagen in der Medizin | acatech diskutiert, Produktionsfaktor Mathematik - Wie Mathematik Technik und Wirtschaft bewegt, Springer, pp. 435-459, 2008 (preprint available as ) |
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Britta Weber | Merkmalskurven auf triangulierten Oberflächen | Master's thesis, Freie Universität Berlin, Fachbereich Mathematik und Informatik (K. Polthier) und ZIB (S. Prohaska), 2008 |
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Heiko Seim, Dagmar Kainmüller, Anja Kuss, Hans Lamecker, Stefan Zachow, Randolf Menzel, Juergen Rybak | Model-based autosegmentation of the central brain of the honeybee, Apis mellifera, using active statistical shape models | Proc. 1st INCF Congress of Neuroinformatics: Databasing and Modeling the Brain, 2008 |
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Holger Theisel, Tino Weinkauf | Morphological Representations of Vector Fields | Shape Analysis and Structuring, Springer, 2008 |
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Dagmar Kainmüller, Hans Lamecker, Stefan Zachow, Markus O. Heller, Hans-Christian Hege | Multi-Object Segmentation with Coupled Deformable Models | Proc. Medical Image Understanding and Analysis, pp. 34-38, 2008 |
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Christoph Petz, Steffen Prohaska, Leonid Goubergrits, Ulrich Kertzscher, Hans-Christian Hege | Near-Wall Flow Visualization in Flattened Surface Neighborhoods | Proc. Simulation and Visualization 2008, pp. 93-105, 2008 |
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Marcel Oberlaender, Vincent J. Dercksen, Philip J. Broser, Randy M. Bruno, Bert Sakmann | NeuroMorph and NeuroCount: Automated tools for fast and objective acquisition of neuronal morphology for quantitative structural analysis | Frontiers in Neuroinformatics. Conference Abstract: Neuroinformatics, 2008 |
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Leonid Goubergrits, Ulrich Kertzscher, Klaus Affeld, Christoph Petz, Detlev Stalling | Numerical Dye Washout Method as a Tool for Characterizing the Heart Valve Flow | ASAIO Journal, Vol.54(1), pp. 50-57, 2008 |
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Anja Kuß, Steffen Prohaska, Björn Meyer, Jürgen Rybak, Hans-Christian Hege | Ontology-Based Visualization of Hierarchical Neuroanatomical Structures | Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine VCBM 2008, pp. 177-184, 2008 |
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Heiko Seim, Hans Lamecker, Stefan Zachow | Segmentation of Bony Structures with Ligament Attachment Sites | Bildverarbeitung für die Medizin 2008, pp. 207-211, GI Informatik aktuell, 2008 |
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Wolfram von Funck, Tino Weinkauf, Holger Theisel, Hans-Christian Hege | Smoke Surfaces: An Interactive Flow Visualization Technique Inspired by Real-World Flow Experiments | IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization 2008), pp. 1396-1403, 14(6), 2008 |
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Vincent J. Dercksen, Cornelia Brüß, Detlev Stalling, Sabine Gubatz, Udo Seiffert, Hans-Christian Hege | Towards automatic generation of 3D models of biological objects based on serial sections | Visualization in Medicine and Life Sciences, Springer-Verlag Berlin Heidelberg, pp. 3-25, 2008 |
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Jalda Dworzak, Hans Lamecker, Jens von Berg, Tobias Klinder, Cristian Lorenz, Dagmar Kainmüller, Heiko Seim, Hans-Christian Hege, Stefan Zachow | Towards model-based 3-D reconstruction of the human rib cage from radiographs | Proc. 7. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), pp. 193-196, 2008 |
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Thomas Lange, Hans Lamecker, Michael Hünerbein, Sebastian Eulenstein, Sigfried Beller, Peter Schlag | Validation Metrics for Non-Rigid Registration of Medical Images containing Vessel Trees | pp. 82-86, Springer, 2008 |
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Hans Lamecker | Variational and statistical shape modeling for 3D geometry reconstruction | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Martin Rumpf (Advisors), 2008 |
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Kuangyu Shi, Tino Weinkauf, Holger Theisel, Hans-Christian Hege, Hans-Peter Seidel | Visualizing Transport Structures of Time-Dependent Flow Fields | IEEE Computer Graphics and Applications, pp. 24-35, 2008 |
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Chavdar Papazov, Vincent J. Dercksen, Hans Lamecker, Hans-Christian Hege | Visualizing morphogenesis and growth by temporal interpolation of surface-based 3D atlases | Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging, pp. 824-827, 2008 |
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Volume and Point-Based Graphics 2008 | Hans-Christian Hege, David Laidlaw, Renato Pajarola, Oliver Staadt (Eds.), Eurographics Association, 2008, ISBN: 978-3-905674-12-5 |
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Stefan Zachow, Michael Zilske, Hans-Christian Hege | 3D Reconstruction of Individual Anatomy from Medical Image Data: Segmentation and Geometry Processing | 25. ANSYS Conference & CADFEM Users’ Meeting, 2007 (preprint available as ZIB-Report 07-41) |
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Thomas Lange, Michael Hünerbein, Sebastian Eulenstein, Sigfried Beller, Peter Schlag, Hans Lamecker | A Distance Measure for Non-Rigid Registration of Geometrical Models to Intensity Data | Int. J. Computer Assisted Radiology and Surgery, Vol.2, Suppl. 1, pp. 204-206, 2007 |
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Daniel Baum | A Point-Based Algorithm for Multiple 3D Surface Alignment of Drug-Sized Molecules | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Joachim Selbig (Advisors), 2007 |
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Hans Lamecker, Lukas Kamer, Antonia Wittmers, Stefan Zachow, Thomas Kaup, Alexander Schramm, Hansrudi Noser, Beat Hammer | A method for the three-dimensional statistical shape analysis of the bony orbit | Proc. Computer Aided Surgery around the Head, pp. 94-97, 2007 |
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Thomas Lange, Hans Lamecker, Michael Hünerbein, Sebastian Eulenstein, Sigfried Beller, Peter Schlag | A new class of distance measures for registration of tubular models to image data | Proc. Bildverarbeitung für die Medizin (BVM), A. Horsch (Ed.), pp. 101-105, Informatik aktuell, 2007 |
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Tino Weinkauf, Jan Sahner, Holger Theisel, Hans-Christian Hege, Hans-Peter Seidel | A unified feature extraction architecture | Active Flow Control, pp. 119-133, Notes on Numerical Fluid Mechanics and Multidisciplinary Design (NNFM), 2007 |
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Michael Zilske | Adaptive remeshing of non-manifold triangulations | Master's thesis, Freie Universität Berlin, Fachbereich Mathematik und Informatik (K. Polthier) und ZIB (S. Zachow, Hans Lamecker), Konrad Polthier, Hans Lamecker, Stefan Zachow (Advisors), 2007 |
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Chris Greenhalgh, Steve Benford, Adam Drozd, Martin Flintham, Alastair Hampshire, Leif Oppermann, Keir Smith, Christoph von Tycowicz | Addressing Mobile Phone Diversity in Ubicomp Experience Development | UbiComp 2007: Ubiquitous Computing, 9th International Conference, pp. 447-464, Vol.4717, Lecture Notes in Computer Science, 2007 |
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Werner Heppt, Thomas Hildebrandt, Alexander Steinmann, Stefan Zachow | Aesthetic and Function in Rhinoplasty | Springer Journal, Vol.264 (Suppl 1), RL 126, p. 307, 2007 |
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Sabine Gubatz, Vincent J. Dercksen, Cornelia Brüß, Winfriede Weschke, Ulrich Wobus | Analysis of barley (hordeum vulgare) grain development using three-dimensional digital models | The Plant Journal, 52(4), pp. 779-790, 2007 |
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Eric Bodden, Malte Clasen, Joachim Kneis | Arithmetic coding revealed - a guided tour from theory to praxis | Technical Report SABLE-TR-2007-5, Sable Research Group, School of Computer Science, McGill University, 2007 |
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Malte Clasen, Hans-Christian Hege | Clipmap-based Terrain Data Synthesis | Proc. SimVis 2007, Thomas Schulze, Bernhard Preim, Heidrun Schumann (Eds.), pp. 385-398, 2007 |
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Bert Günther, Frank Thiele, Ralf Petz, Wolfgang Nitsche, Jan Sahner, Tino Weinkauf, Hans-Christian Hege | Control of Separation on the Flap of a Three-Element High-Lift Configuration | 45th AIAA Aerospace Sciences Meeting and Exhibit, 2007 |
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Tino Weinkauf, Jan Sahner, Holger Theisel, Hans-Christian Hege | Cores of Swirling Particle Motion in Unsteady Flows | IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization 2007), 13(6), pp. 1759-1766, 2007 |
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Philip Paar, Malte Clasen | Earth, Landscape, Biotope, Plant. Interactive visualisation with Biosphere3D | Proceedings of CORP - 12th International Conference on Urban Planning and Spatial Development in the Information Society, May 20th - 23rd, pp. 207-214, 2007 |
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Kuangyu Shi, Holger Theisel, Tino Weinkauf, Helwig Hauser, Hans-Christian Hege, Hans-Peter Seidel | Extracting separation surfaces of path line oriented topology in periodic 2D time-dependent vector fields | pp. 75-82, 2007 |
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Tino Weinkauf, Holger Theisel, Hans-Christian Hege, Hans-Peter Seidel | Feature Flow Fields in Out-of-Core Settings | Topology-based Methods in Visualization, Springer, pp. 51-64, 2007 |
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Michael Gessat, Stefan Zachow, Oliver Burgert, Heinz Lemke | Geometric Meshes in Medical Applications - Steps towards a specification of Geometric Models in DICOM | Int. J. of Computer Assisted Radiology and Surgery (CARS), pp. 440-442, 2007 |
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Thomas Hildebrandt, Stefan Zachow, Alexander Steinmann, Werner Heppt | Innovation in der Funktionell-Ästhetischen Nasenchirurgie: Rhino-CFD | Face, Int. Mag. of Orofacial Esthetics, pp. 20-23, 2007 |
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Leif Oppermann, R. Jacobs, M. Watkins, R. Shackford, Christoph von Tycowicz, M. Wright, M. Capra, Chris Greenhalgh, Steve Benford | Love City: A Text-Driven, Location-Based Mobile Phone Game Played Between 3 Cities | Pervasive Gaming Applications - A Reader for Pervasive Gaming Research, Shaker Verlag, pp. 285-312, 2007, ISBN: 978-3-8322-6224-2 |
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Kerstin Neubert, Hans Lamecker, Hans-Christian Hege, Randolf Menzel, Jürgen Rybak | Model-based autosegmentation of brain structures in the honeybee using statistical shape models | Proc. 8th Int. Congr. of Neuroethology (ICN), 2007 |
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Chavdar Papazov | Morphing zwischen triangulierten Nicht-Mannigfaltigkeiten unter Berücksichtigung topologischer Änderungen | Master's thesis, Institut für Mensch-Maschine-Kommunikation, Gottfried Wilhelm Leibniz Universität Hannover, Lehrstuhl für Graphische Datenverarbeitung, Franz-Erich Wolter, Hans-Christian Hege, Vincent J. Dercksen (Advisors), 2007 |
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Markus O. Heller, Georg Matziolis, Christian König, William R. Taylor, S. Hinterwimmer, H. Graichen, Hans-Christian Hege, G. Bergmann, Carsten Perka, G. N. Duda | Muskuloskelettale Biomechanik des Kniegelenks - Grundlagen für die präoperative Planung von Umstellung und Gelenkersatz | Der Orthopäde, 36(7), pp. 628-634, 2007 |
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Holger Theisel, Tino Weinkauf | On the Applicability of Topological Methods for Complex Flow Data | Topology-based Methods in Visualization, Springer, pp. 105-120, 2007 |
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Anja Kuß, Hans-Christian Hege, Sabine Krofczik, Jana Börner | Pipeline for the creation of surface-based averaged brain atlases | Proceedings of WSCG 2007 - the 15-th International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision, pp. 17-24, Vol.15, 2007 |
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Jana Dornheim, Heiko Seim, Bernhard Preim, Ilka Hertel, Gero Strauß | Segmentation of neck lymph nodes in CT datasets with stable 3D mass-spring models | Academic Radiology (2), Vol.14(2), pp. 1389-1399, 2007 |
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Dagmar Kainmüller, Thomas Lange, Hans Lamecker | Shape constrained automatic segmentation of the liver based on a heuristic intensity model | Proc. MICCAI Workshop 3D Segmentation in the Clinic, pp. 109-116, 2007 |
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Ralf Kähler, Tom Abel, Hans-Christian Hege | Simultaneous GPU-Assisted Raycasting of Unstructured Point Sets and Volumetric Grid Data | Proceedings of IEEE/EG International Symposium on Volume Graphics 2007, pp. 49-56, 2007 |
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Steffen Prohaska | Skeleton-based visualization of massive voxel objects with network-like architecture | Doctoral thesis, Universität Potsdam, Jürgen Döllner (Advisor), 2007 |
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Stefan Zachow, Alexander Steinmann, Thomas Hildebrandt, Werner Heppt | Understanding nasal airflow via CFD simulation and visualization | Proc. Computer Aided Surgery around the Head, pp. 173-176, 2007 |
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Volume Graphics 2007 | Hans-Christian Hege, Raghu Machiraju (Eds.), AK Peters, 2007, ISBN: 978-1-56881-367-7 |
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Jan Sahner, Tino Weinkauf, Nathalie Teuber, Hans-Christian Hege | Vortex and strain skeletons in Eulerian and Lagrangian frames | pp. 980-990, 2007 |
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2006 |
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Christian Schudoma | A Fragment Based Approach to RNA Threading | Master's thesis, Free University Berlin, Dept. Mathematics and Computer Science (Knut Reinert) and ZIB (Frank Cordes, Patrick May), 2006 |
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Daniel Baum, Hans-Christian Hege | A Point-matching based algorithm for 3D surface alignment of drug-sized molecules | Computational Life Sciences II, Second International Symposium, CompLife 2006, Cambridge (UK), Sept. 2006, pp. 183-193, Vol.4216, Lecture Notes in Bioinformatics, 2006 |
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Ralf Kähler, John Wise, Tom Abel, Hans-Christian Hege | A framework for interactive, high-quality volume rendering of cosmological simulations | Proc. Int. Workshop on Volume Graphics (VG06), pp. 103-110, 2006 |
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Francis Cassot, Frederic Lauwers, Céline Fouard, Steffen Prohaska, Valerie Lauwer-Cances | A novel three-dimensional computer assisted method for a quantitative study of microvascular networks of the human cerebral cortex | Microcirculation, Vol.13, pp. 15-32, 2006 |
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Lars Dornheim, Jana Dornheim, Heiko Seim, Klaus Tönnies | Aktive Sensoren: Kontextbasierte Filterung von Merkmalen zur modellbasierten Segmentierung | Bildverarbeitung für die Medizin, pp. 96-100, 2006 |
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Werner Benger, Hans-Christian Hege | Analysing curved spacetimes with tensor splats | Proceedings of the Tenth Marcel Grossmann Meeting in Theoretical and Experimental General Relativity, Gravitation and Relativistic Field Theories, pp. 1619-1624, Vol.3, 2006 |
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Hans Lamecker, Thomas Wenckebach, Hans-Christian Hege | Atlas-based 3D-shape reconstruction from x-ray images | Proc. Int. Conf. of Pattern Recognition (ICPR2006), pp. 371-374, Vol.Volume I, 2006 |
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Hans Lamecker, Thomas Wenckebach, Hans-Christian Hege, Georg N. Duda, Markus Heller | Atlas-basierte 3D-Rekonstruktion des Beckens aus 2D-Projektionsbildern | Bildverarbeitung für die Medizin 2006: Algorithmen - Systeme - Anwendungen, pp. 26-30, 2006 |
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Hans Lamecker, Stefan Zachow, Antonia Wittmers, Britta Weber, Hans-Christian Hege, Barbara Elsholtz, Michael Stiller | Automatic segmentation of mandibles in low-dose CT-data | Int. J. Computer Assisted Radiology and Surgery, Vol.1(1), pp. 393-395, 2006 |
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Céline Fouard, Grégoire Malandain, Steffen Prohaska, Malte Westerhoff | Blockwise processing applied to brain micro-vascular network study | IEEE Transactions on Medical Imaging, 25(10), pp. 1319-1328, 2006 |
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Stefan Zachow, Alexander Steinmann, Thomas Hildebrandt, Rainer Weber, Werner Heppt | CFD simulation of nasal airflow: Towards treatment planning for functional rhinosurgery | Int. J. of Computer Assisted Radiology and Surgery, pp. 165-167, 2006 |
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Leonid Goubergrits, Tobias Timmel, Klaus Affeld, Christoph Petz, Detlev Stalling, Hans-Christian Hege | Characterization of an artificial valve flow using the numerical dye washout visualization technique | Artificial Organs, Vol.30(8), pp. 642-650, 2006 |
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Stefan Zachow, Hans-Christian Hege, Peter Deuflhard | Computer assisted planning in cranio-maxillofacial surgery | Journal of Computing and Information Technology, Vol.14(1), pp. 53-64, 2006 |
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Philipp Beckmann | Consistent Cell-Decomposition of Homeomorphic Simplicial Surfaces | Master's thesis, Technische Universität Berlin, Fachbereich Mathematik, and ZIB, 2006 |
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Andrei Hutanu, Gabrielle Allen, Stephen Beck, Petr Holub, Hartmut Kaiser, Archit Kulshrestha, Milos Liska, Jon MacLaren, Ludek Matyska, Ravi Paruchuri, Steffen Prohaska, Edward Seidel, Brygg Ullmer, Shalini Venkataraman | Distributed and collaborative visualization of large data sets using high-speed networks | Future Generation Comp. Syst, Vol.22(8), pp. 1004-1010, 2006 |
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Heiko Seim, Jana Dornheim, Uta Preim | Ein 2-Fronten-Feder-Masse-Modell zur Segmentierung von Lymphknoten in CT-Daten des Halses | Bildverarbeitung für die Medizin, pp. 106-110, 2006 |
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Steffen Prohaska | Interaktive Visualisierung und Datenanalyse: Herausforderungen durch wachsende Datenmengen | Kartographische Schriften, pp. 103-110, Vol.10, 2006 |
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Stefan Zachow, Hans Lamecker, Barbara Elsholtz, Michael Stiller | Is the course of the mandibular nerve deducible from the shape of the mandible? | Int. J. of Computer Assisted Radiology and Surgery, pp. 415-417, 2006 |
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Maja Zöckler | Modellgebundene Cranioplastie - Operationstechnik zur Umformung frühkindlicher Schädeldeformitäten unter Verwendung dreidimensionaler Standardformmodelle aus MRT-basierten Rekonstruktionen nicht deformierter Kinder | Doctoral thesis, Charité – Universitätsmedizin Berlin, Ernst-Johannes Haberl, Hans Lamecker, Stefan Zachow (Advisors), 2006 |
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Kuangyu Shi, Holger Theisel, Tino Weinkauf, Helwig Hauser, Hans-Christian Hege, Hans-Peter Seidel | Path line oriented topology for periodic 2D time-dependent vector fields | Proc. Eurographics / IEEE VGTC Symposium on Visualization, pp. 139-146, 2006 |
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Liviu Coconu, Oliver Deussen, Hans-Christian Hege | Real-time pen-and-ink illustration of landscapes | NPAR '06: Proceedings of the 3rd International Symposium on Non-photorealistic Animation and Rendering, pp. 27-35, 2006 |
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Illia Horenko, Johannes Schmidt-Ehrenberg, Christof Schütte | Set-oriented dimension reduction: Localizing principal component analysis via hidden Markov models | Computational Life Sciences II, Vol.4216, pp. 98-115, Springer, 2006 |
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Werner Benger, Hans-Christian Hege | Strategies for direct visualization of second-rank tensor fields | Visualization and Processing of Tensor Fields, pp. 191-214, 2006 |
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Hans Lamecker, Stefan Zachow, Hans-Christian Hege, Maja Zöckler | Surgical treatment of craniosynostosis based on a statistical 3D-shape model | Int. J. Computer Assisted Radiology and Surgery, Vol.1(1), pp. 253-254, 2006 |
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Malte Clasen, Hans-Christian Hege | Terrain rendering using spherical clipmaps | EuroVis 2006 - Eurographics / IEEE VGTC Symposium on Visualization, pp. 91-98, 2006 |
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Lukas Kamer, Hansrudi Noser, Hans Lamecker, Stefan Zachow, Antonia Wittmers, Thomas Kaup, Alexander Schramm, Beat Hammer | Three-dimensional statistical shape analysis - A useful tool for developing a new type of orbital implant? | pp. 20-21, AO Development Institute, New Products Brochure 2/06, 2006 |
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Tino Weinkauf, Holger Theisel, Hans-Christian Hege, Hans-Peter Seidel | Topological structures in two-parameter-dependent 2D vector fields | Computer Graphics Forum, Vol.25 (3), pp. 607-616, 2006 |
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Alex Duffy, Stefan Harris, Jochen Marzi, Christoph Petz, Zichao Wu | VIRTUE: Integrating CFD Ship Design | Proc. of 7th International Conference on Hydrodynamics, 2006 |
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Alexander Maye, Thomas Wenckebach, Hans-Christian Hege | Visualization, reconstruction, and integration of neuronal structures in digital brain atlases | Int. Journal of Neuroscience, Vol.116(4), pp. 431-459, 2006 |
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Werner Benger, Hauke Bartsch, Hans-Christian Hege, Hagen Kitzler, Anna Shumilina, Annett Werner | Visualizing neuronal structures in the human brain via Diffusion Tensor MRI | Int. Journal of Neuroscience, Vol.116(4), pp. 461-514, 2006 |
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Christoph Petz, Tino Weinkauf, Heinrich Streckwall, Franceso Salvatore, Bernd R. Noack, Hans-Christian Hege | Vortex Structures at a Rotating Ship Propeller | Presented at the 24th Annual Gallery of Fluid Motion exhibit, held at the 59th Annual Meeting of the American Physical Society, Division of Fluid Dynamics, Tampa Bay, 2006 |
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2005 |
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Anders Westermark, Stefan Zachow, Barry Eppley | 3D osteotomy planning in maxillofacial surgery, including 3D soft tissue prediction | Journal of Craniofacial Surgery, Vol.16(1), pp. 100-104, 2005 |
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Robert Brandt, Torsten Rohlfing, Jürgen Rybak, Sabine Krofczik, Alexander Maye, Malte Westerhoff, Hans-Christian Hege, Randolf Menzel | A three-dimensional average-shape atlas of the honeybee brain and its applications | Journal of Comparative Neurology, Vol.492(1), pp. 1-19, 2005 |
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Ralf Kähler | Accelerated Volume Rendering on Structured Adaptive Meshes | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Edward Seidel, Konrad Polthier (Advisors), 2005 |
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Detlev Stalling, Malte Westerhoff, Hans-Christian Hege | Amira: A highly interactive system for visual data analysis | The Visualization Handbook, pp. 749-767, Charles Hansen, Christopher Johnson (Eds.), Elsevier, 2005 |
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Carsten Lange, Konrad Polthier | Anisotropic fairing of point sets | Special Issue of CAGD 2005, 2005 (preprint available as ) |
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ESA-MAP-Team AO-99-030 | Assessment of bone structure and its changes in microgravity | SP-1290: Microgravity Applications Programme: Successful Teaming of Science and Industry, A. Wilson (Ed.), European Space Agency, pp. 282-305, 2005 |
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Malte Clasen | Beleuchtung von Landschaften in interaktiver Darstellung | Master's thesis, 2005 |
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Malte Clasen | Beleuchtung von Landschaften in interaktiver Darstellung | Master's thesis, Technische Universität Berlin (Heinz U. Lemke) und ZIB (Hans-Christian Hege), 2005 |
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Thomas Wenckebach, Hans Lamecker, Hans-Christian Hege | Capturing anatomical shape variability using B-spline registration | Information Processing in Medical Imaging: 19th International Conference (IPMI 2005), Gary Christensen, Milan Sonka (Eds.), pp. 578-590, Vol.3565/2005, Lecture Notes in Computer Science, 2005 |
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Konrad Polthier | Computational aspects of discrete minimal surfaces | Global Theory of Minimal Surfaces, Proc. of the Clay Mathematics Institute Summer School, CMI/AMS, J. Hass, D. Hoffman, A. Jaffe, H. Rosenberg, R. Schoen, M. Wol (Eds.), 2005 |
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Stefan Zachow | Computer assisted osteotomy planning in cranio-maxillofacial surgery under consideration of facial soft tissue changes | Doctoral thesis, Technische Universität Berlin, 2005 |
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Stefan Zachow | Computergestützte 3D Osteotomieplanung in der Mund-Kiefer-Gesichtschirurgie unter Berücksichtigung der räumlichen Weichgewebeanordnung | Doctoral thesis, Technische Universität Berlin, Heinz Lemke, Bernhard Preim, Hans-Florian Zeilhofer (Advisors), 2005, ISBN: 3899631986 |
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Oliver Deussen, Carsten Colditz, Liviu Coconu, Hans-Christian Hege | Efficient modelling and rendering of landscapes | Visualization in Landscape and Environmental Planning, Ian Bishop, Eckart Lange (Eds.), Spon Press: London, pp. 56-61, 2005 |
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Klaus Hildebrandt, Konrad Polthier, Eike Preuß | Evolution of 3D curves under strict spatial constraints | IEEE Proceedings on Ninth International Conference on Computer Aided Design and Computer Graphics (CAD/CG 2005), pp. 40-45, 2005 |
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Holger Theisel, Jan Sahner, Tino Weinkauf, Hans-Christian Hege, Hans-Peter Seidel | Extraction of parallel vector surfaces in 3D time-dependent fields and application to vortex core line tracking | Proc. IEEE Visualization 2005, pp. 559-566, 2005 |
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Vincent J. Dercksen, Steffen Prohaska, Hans-Christian Hege | Fast cross-sectional display of large data sets | IAPR Conference on Machine Vision Applications, pp. 336-339, 2005 |
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Felix Kälberer, Konrad Polthier, Ulrich Reitebuch, Max Wardetzky | Free Lence - Coding with free valences | Computer Graphics Forum, 24(Issue 3), pp. 469-478, 2005 |
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Emeka Nkenke, Stefan Zachow, Gerd Häusler | Fusion von optischen 3D- und CT-Daten des Gebisses zur Metallartefaktkorrektur vor computerassistierter Planung MKG-chirurgischer Eingriffe | Symposium der Arbeitsgemeinschaf für Kieferchirurgie, 2005 |
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Jan Sahner, Tino Weinkauf, Hans-Christian Hege | Galilean invariant extraction and iconic representation of vortex core lines | Proc. Eurographics / IEEE VGTC Symposium on Visualization (EuroVis ’05), K. Brodlie, D. Duke, K. Joy (Eds.), pp. 151-160, 2005 |
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Hans-Christian Hege | Hintergrundinformationen zum Artikel ‘Neue Bilder für die Medizin?’ | DFG-Research Center Matheon, Report, 19 pages, 2005 |
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Armin Werner, Oliver Deussen, Jürgen Döllner, Hans-Christian Hege, Philip Paar, Jörg Rekittke | Lenné 3D walking through landscape plan | Trends in Real-Time Landscape Visualization and Participation, pp. 48-59, 2005 |
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Stefan Zachow, Hans-Christian Hege, Peter Deuflhard | Maxillofacial surgery planning with 3D soft tissue prediction - modeling, planning, simulation | 2. Int. Conf. on Advanced Digital Technology in Head and Neck Reconstruction, Abstract 33, p. 64, 2005 |
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Hans Lamecker, Stefan Zachow, Hannes Haberl, Michael Stiller | Medical applications for statistical shape models | Computer Aided Surgery around the Head, Fortschritt-Berichte VDI - Biotechnik/Medizintechnik, Vol.17 (258), p. 61, 2005 |
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Alexei Zaikin, Peter Saparin, Jürgen Kurths, Steffen Prohaska, Wolfgang Gowin | Modeling resorption in 2D-CT and 3D μ-CT bone images | Int. J. of Bif. and Chaos, Vol.15(9), pp. 2995-3009, 2005 |
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Daniel Baum | Multiple semi-flexible 3D superposition of drug-sized molecules | Computational Life Sciences: First International Symposium, CompLife 2005, pp. 198-207, Vol.3695, Lecture Notes on Computer Science, 2005 (preprint available as ) |
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W. Röhricht, Malte Clasen | Multum, non multi - Hierarchische Bit Trees bei der Pflanzenverteilung mit oik | Simulation in Umwelt- und Geowissenschaften. Workshop Dresden 2005, 2005 |
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Günter M. Ziegler, Hans-Christian Hege, Georg Duda | Neue Bilder für die Medizin? | DFN-Mitteilungen, Vol.13(3), pp. 163-167, 2005 |
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Peter Saparin, Jesper Thomsen, Steffen Prohaska, Alexei Zaikin, Jürgen Kurths, Hans-Christian Hege, Wolfgang Gowin | Quantification of spatial structure of human proximal tibial bone biopsies using 3D measures of complexity | Acta Astronautica, 56(9-12), pp. 820-830, 2005 |
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Carsten Colditz, Liviu Coconu, Oliver Deussen, Hans-Christian Hege | Real-time rendering of complex photorealistic landscapes using hybrid level-of-detail approaches | Trends in Real-Time Landscape Visualization and Participation, Erich Buhmann, Philip Paar, Ian Bishop, Eckart Lange (Eds.), Wichmann Verlag, pp. 97-106, 2005 |
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Malte Clasen, Hans-Christian Hege | Realistic illumination of vegetation in real-time environments | Trends in Real-Time Landscape Visualization and Participation, Erich Buhmann, Philip Paar, Ian Bishop, Eckart Lange (Eds.), Wichmann Verlag, pp. 107-114, 2005 |
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Stefan Zachow, Hans Lamecker, Barbara Elsholtz, Michael Stiller | Reconstruction of mandibular dysplasia using a statistical 3D shape model | Proc. Computer Assisted Radiology and Surgery (CARS), pp. 1238-1243, 2005 |
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Thomas Lange, Thomas Wenckebach, Hans Lamecker, Martin Seebaß, Michael Hünerbein, Sebastian Eulenstein, Peter-Michael Schlag | Registration of different phases of contrast-enhanced CT/MRI data for computer-assisted liver surgery planning | Int. J. Medical Robotics and Computer Assisted Surgery, pp. 6-20, Vol.1 (3), 2005 |
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Thomas Lange, Thomas Wenckebach, Hans Lamecke, Martin Seebaß, Michael Hünerbein, Sebastian Eulenstein, Peter-Michael Schlag | Registration of portal and hepatic venous phase of MR/CT data for computer-assisted liver surgery planning | Proc. Computer Assisted Radiology and Surgery (CARS), Heinz Lemke (Ed.), pp. 768-772, Int. Congress Series (1281), 2005 |
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Steffen Prohaska, Andrei Hutanu | Remote data access for interactive visualization | 13th Annual Mardi Gras Conference: Frontiers of Grid Applications and Technologies, pp. 17-22, 2005 |
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Liviu Coconu, Carsten Colditz, Hans-Christian Hege, Oliver Deussen | Seamless integration of stylized renditions in computer-generated landscape visualization | Trends in Real-Time Landscape Visualization and Participation, Erich Buhmann, Philip Paar, Ian Bishop, Eckart Lange (Eds.), Wichmann Verlag: Heidelberg, pp. 88-96, 2005 |
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Klaus Hildebrandt, Konrad Polthier, Max Wardetzky | Smooth feature lines on surface meshes | Third Eurographics Symposium on Geometry Processing, pp. 85-90, 2005 |
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Hans Lamecker, Maja Zöckler, Hannes Haberl, Stefan Zachow, Hans-Christian Hege | Statistical shape modeling for craniosynostosis planning | 2nd International Conference Advanced Digital Technology in Head and Neck Reconstruction 2005, Abstract Volume, p. 64, 2005 |
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Jesper Thomsen, Andreas Laib, Bruno Koller, Steffen Prohaska, L. Mosekilde, Wolfgang Gowin | Stereological measures of trabecular bone structure: Comparison of 3D micro computed tomography with 2D histological sections in human proximal tibial bone biopsies | Journal of Microscopy, Vol.218, pp. 171-179, 2005 |
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Emeka Nkenke, Gerd Häusler, Friedrich Neukam, Stefan Zachow | Streak artifact correction of CT data by optical 3D imaging in the simulation of orthognathic surgery | Computer Assisted Radiology and Surgery (CARS), 2005 |
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Gabrielle Allen, K. Davis, Tom Goodale, Andrei Hutanu, Hartmut Kaiser, Thilo Kielmann, Andre Merzky, R. Nieuwpoort, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Edward Seidel, Brygg Ullmer | The Grid Application Toolkit: Toward Generic and Easy Appliction Programming Interfaces for the Grid | Procceedings of the IEEE, 93(3), pp. 534-550, 2005 |
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Holger Theisel, Tino Weinkauf, Hans-Christian Hege, Hans-Peter Seidel | Topological methods for 2D time-dependent vector fields based on stream lines and path lines | IEEE Transactions on Visualization and Computer Graphics, 11(4), 2005 |
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Tino Weinkauf, Holger Theisel, Kuangyu Shi, Hans-Christian Hege, Hans-Peter Seidel | Topological simplification of 3D vector fields and extracting higher order critical points | Proc. IEEE Visualization 2005, pp. 631-638, 2005 |
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Hans-Christian Hege, Tino Weinkauf, Steffen Prohaska, Andrei Hutanu | Towards distributed visualization and analysis of large flow data | JSME International Journal, Series B, Vol.48 (2), pp. 241-246, 2005 |
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Johannes Schmidt-Ehrenberg, Hans-Christian Hege | Visual analysis of molecular conformations by means of a dynamic density mixture model | Computational Life Sciences: First International Symposium, CompLife 2005, pp. 229-240, Vol.3695, Lecture Notes on Computer Science, 2005 (preprint available as ) |
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Ralf Kähler, Steffen Prohaska, Andrei Hutanu, Hans-Christian Hege | Visualization of time-dependent remote adaptive mesh refinement data | Proc. IEEE Visualization 2005, pp. 175-182, 2005 |
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Steffen Prohaska, Matthew Dreher, Mark Dewhirst, Ashutosh Chilkoti, Axel Pries | 3-D reconstruction of tumor vascular networks | J. Vas. Res., Vol.41, p. 463, 2004 |
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Hans Lamecker, Martin Seebaß, Hans-Christian Hege, Peter Deuflhard | A 3D statistical shape model of the pelvic bone for segmentation | Proceedings of SPIE - Volume 5370 Medical Imaging 2004, J. Fitzpatrick, Milan Sonka (Eds.), pp. 1341-1351, 2004 |
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Evgeny Gladilin | A contour based approach for invariant shape description | SPIE Medical Imaging Conference, pp. 1282-1291, Vol.5370, 2004 |
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Stefan Zachow, Thomas Hierl, Bodo Erdmann | A quantitative evaluation of 3D soft tissue prediction in maxillofacial surgery planning | Proc. 3. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboter-assistierte Chirurgie e.V., 2004 |
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Stefan Zachow, Bodo Erdmann, Hans-Christian Hege, Peter Deuflhard | Advances in 3D osteotomy planning with 3D soft tissue prediction | Proc. 2nd International Symposium on Computer Aided Surgery around the Head, Abstract, p. 31, 2004 |
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Hans-Christian Hege | Aktuelle Anwendungen der Wissenschaftlichen Visualisierung (Current Applications of Scientific Visualization) | it - Information Technology, Vol.46(3), pp. 142-147, 2004 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Anatomy- and physics-based facial animation for craniofacial surgery simulations | Med Biol Eng Comput., Vol.42(2), pp. 167-170, 2004 |
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Klaus Hildebrandt, Konrad Polthier | Anisotropic filtering of non-linear surface features | Computer Graphics Forum, Vol.23(3), pp. 391-400, 2004 (preprint available as ) |
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Christian Schudoma | Application of a Combined Sequence and Structure Alignment for RNA 3D Modeling | Master's thesis, Freie Universität Berlin, Fachbereich Mathematik und Informatik (C. Gröpl) and ZIB (F. Cordes), 2004 |
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Thomas Lange, Sebastian Eulenstein, Michael Hünerbein, Hans Lamecker, Peter-Michael Schlag | Augmenting intraoperative 3D ultrasound with preoperative models for navigation in liver surgery | Proceedings MICCAI, Christian Barrilot (Ed.), pp. 543-541, Lecture Notes in Computer Science 3217, 2004 |
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Tino Weinkauf, Holger Theisel, Hans-Christian Hege, Hans-Peter Seidel | Boundary switch connectors for topological visualization of complex 3D vector fields | Proc. Joint Eurographics - IEEE TCVG Symposium on Visualization (VisSym ’04), pp. 183-192, 2004 |
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Thomas Hierl, Stefan Zachow, Gert Wollny, Guntram Berti, Jens-Georg Schmidt, Jochen Fingberg | Computer-based simulation in distraction osteogenesis | Proc. of 3rd Int. Oxford Distraction Symposium of the Craniofacial Skeleton, pp. 33-34, 2004 |
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Stefan Zachow, Hans-Christian Hege, Peter Deuflhard | Computergestützte Operationsplanung in der Gesichtschirurgie | Proc. VDE Kongress 2004 - Innovationen für Menschen, Band 2, Fachtagungsberichte DGBMT - GMM - GMA, pp. 53-58, 2004 |
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Thomas Lange, Per-Ulf Tunn, Hans Lamecker, Peter Scheinemann, Sebastian Eulenstein, Peter-Michael Schlag | Computerunterstützte Prothesenkonstruktion mittels statistischem Formmodell bei Beckenresektion | Proceedings BVM, Informatik aktuell, Thomas Tolxdorff (Ed.), pp. 30-34, 2004 |
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Thomas Hierl, Stefan Zachow, Gert Wollny, Guntram Berti, Jens-Georg Schmidt, Jochen Fingberg | Concepts of computer-based simulation in orthognathic surgery | Journal of Cranio-Maxillofacial Surgery 32 Suppl. 1, pp. 81-82, 2004 |
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Thomas Wenckebach | Das Korrespondenzproblem für Statistische 3D-Formmodelle in biomedizinischen Anwendungen | 2004 |
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Hans-Christian Hege, Tino Weinkauf, Steffen Prohaska, Andrei Hutanu | Distributed visualization and analysis of fluid dynamics data | Proc. Fourth International Symposium on Advanced Fluid Information and Transdisciplinary Fluid Integration, pp. 145-150, 2004 |
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Sergio Alonso, Ralf Kähler, Alexander S. Mikhailov, Francisco Sagués | Expanding scroll rings and negative tension turbulence in a model of excitable media | Phys. Rev. E, 70(5), p. 056201, 2004 |
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Emeka Nkenke, Stefan Zachow, Michaela Benz, Tobias Maier, Klaus Veit, Manuel Kramer, St. Benz, Gerd Häusler, Friedrich Neukam, Michael Lell | Fusion of computed tomography data and optical 3D images of the dentition for streak artefact correction in the simulation of orthognathic surgery | Journal of Dento-Maxillofacial Radiology, Vol.33, pp. 226-232, 2004 |
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Jon Adolfson, Johan Helgesson | Generation of Smooth Non-Manifold Surfaces from Segmented Image Data | Master's thesis, Lund University, Department of Computer Science (L. Ohlsson) and ZIB (D. Stalling), 2004 |
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Holger Theisel, Tino Weinkauf, Hans-Christian Hege, Hans-Peter Seidel | Grid-independent detection of closed stream lines in 2D vector fields | Proc. Vision, Modeling and Visualization 2004, pp. 421-428, 2004 |
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Steffen Prohaska, Andrei Hutanu, Ralf Kähler, Hans-Christian Hege | Interactive exploration of large remote micro-CT scans | Proc. IEEE Visualization 2004, pp. 345-352, 2004 |
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Tim Conrad | Metabolic Pathways | Doctoral thesis, Monash University Melbourne, unknown (Advisor), 2004 |
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Timm Baumeister | Modellierung der freien Solvatisierungsenthalpie und Anwendung als Scoringfunktion | Master's thesis, Humbold-Universität zu Berlin, Institut für Biophysik (R. Heinrich) und ZIB (F. Cordes), 2004 |
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Tim Conrad | New Appraches for Visualizing and Analyzing Metabolic Pathways | Proceedings of the Second Australian Undergraduate Students? Computing Conference, 2004 |
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Stefan Zachow, Thomas Hierl, Bodo Erdmann | On the Predictability of tissue changes after osteotomy planning in maxillofacial surgery | Computer Assisted Radiology and Surgery (CARS), pp. 648-653, 2004 |
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Thomas Lange, Thomas Wenckebach, Martin Seebaß, Hans Lamecker, Michael Hünerbein | Registration of different phases of contrast-enhanced MR data for liver surgery | 3. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie CURAC, 2004 |
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Thorsten Schütt, André Merzky, Andrei Hutanu, Florian Schintke | Remote partial file access using compact pattern descriptions | 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), April 19-22, 2004, Chicago, Illinois, USA, pp. 482-489, 2004 |
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Céline Fouard, Grégoire Malandain, Steffen Prohaska, Malte Westerhoff, Francis Cassot, Christophe Mazel, Didier Asselot, Jean-Pierre Marc-Vergnes | Skeletonization by blocks for large 3D datasets: Application to brain microcirculation | IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04), pp. 89-92, 2004 |
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Céline Fouard, Grégoire Malandain, Steffen Prohaska, Malte Westerhoff, Francis Cassot, Christophe Mazel, Didier Asselot, Jean-Pierre Marc-Vergnes | Squelettisation par blocs pour des grands volumes de données 3D | Reconnaissance des Formes et Intelligence Artificielle (RFIA 2004), 2004 |
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Holger Theisel, Tino Weinkauf, Hans-Christian Hege, Hans-Peter Seidel | Stream line and path line oriented topology for 2D time-dependent vector fields | Proc. IEEE Visualization 2004, pp. 321-328, 2004 |
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Hannes Haberl, Bertold Hell, Maja Zöckler, Stefan Zachow, Hans Lamecker, Asita Sarrafzadeh, B. Riecke, Wolfgang Langsch, Peter Deuflhard, Jürgen Bier, Mario Brock | Technical aspects and results of surgery for craniosynostosis | Zentralblatt für Neurochirurgie, 65(2), pp. 65-74, 2004 |
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Werner Benger, Hans-Christian Hege | Tensor splats | Visualization and Data Analysis 2004, Proc. of SPIE, pp. 151-162, Vol.5295, 2004 (preprint available as ) |
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Martin Seebaß, Hans Lamecker, Johanna Gellermann, Peter Wust | The impact of segmentation accuracy on treatment planning for regional hyperthermia | Proceedings of the 9th International Congress on Hyperthermic Oncology, 2004 |
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Tino Weinkauf, Holger Theisel, Hans-Christian Hege, Hans-Peter Seidel | Topological construction and visualization of higher order 3D vector fields | Computer Graphics Forum, pp. 469-478, Vol.23(3), 2004 |
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Sebastian Eulenstein, Thomas Lange, Michael Hünerbein, Peter Schlag, Hans Lamecker | Ultrasound based navigation system incorporating preoperative planning for liver surgery | Proceedings CARS, pp. 758-763, Vol.1268, 2004 |
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Mirek Majewski, Konrad Polthier | Using MuPAD and JavaView to visualize mathematics on the Internet | Proc. of the 9th Asian Technology Conference in Mathematics, pp. 465-474, 2004 |
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Christoph Petz, Detlev Stalling, Leonid Goubergrits, Klaus Affeld, Andreas Spuler | Validierung von Strömungssimulationen in kardiovaskulären Anwendungen | Bildverabeitung für die Medizin 2004, Thomas Tolxdorff (Ed.), pp. 356-360, 2004 |
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Werner Benger | Visualization of General Relativistic Tensor Fields via a Fiber Bundle Data Model | Doctoral thesis, Freie Universität Berlin, 2004 |
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Thomas Wenckebach | Volumetrische Registrierung zur medizinischen Bildanalyse | Master's thesis, Humboldt-Universität zu Berlin, Institut für Informatik (B. Meffert) und ZIB (H. Lamecker, H.-C. Hege), 2004 |
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Stefan Zachow, Thomas Hierl, Bodo Erdmann | Über die Genauigkeit einer 3D Weichgewebeprädiktion in der MKG-Cirurgie | Workshop ’Bildverarbeitung für die Medizin’ (BVM), pp. 75-79, 2004 |
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2003 |
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Alexei Zaikin, Peter Saparin, Steffen Prohaska, Jürgen Kurths, Wolfgang Gowin | 2D and 3D bone modelling for analysis of changes in the bone architecture and for evaluation of structural measures. | 2nd European Congress ’Achievements in Space Medicine into Health Care Practice and Industry’, 2003 |
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Martin Seebaß, Hans Lamecker, Thomas Lange, Johanna Gellermann, Peter Wust | A Statistical Shape Model of the Pelvic Bone for Segmentation | European Society for Hyperthermic Oncology Annual Meeting Proceedings, pp. 91-92, 2003 |
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Yoshimasa Kadooka, Naoki Onishi, Jang-Woon Choi, Young-Ho Lee, Hans-Christian Hege, Yoshio Tago | A Study on the PIV Virtual Laboratory by Web Grid Technology | CD ROM Proc. PIV'03 - 5th Int. Symp. on Particle Image Velocimetry, Kyung Kim (Ed.), The Korean Society of Visualization: Busan, Korea, 2003 |
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Steffen Prohaska, Hans-Christian Hege, Michael Giehl, Wolfgang Gowin | A Virtual Laboratory for Assessment of Bone Biopsies | 14th IAA Humans in Space Symposium, p. 7, 2003 |
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Wolfgang Gowin, Peter Saparin, Steffen Prohaska, Hans-Christian Hege, Stefan Belle, Dieter Felsenberg | Architectural Reasons for the Femoral Neck Fracture Location | 2nd European Congress ’Achievements in Space Medicine into Health Care Practice and Industry’, 2003 |
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Hans Lamecker, Thomas Lange, Martin Seebaß, Sebastian Eulenstein, Malte Westerhoff, Hans-Christian Hege | Automatic Segmentation of the Liver for Preoperative Planning of Resections | Proc. MMVR 2003, pp. 171-173, Studies in Health Technologies and Informatics 94, 2003 |
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Tino Weinkauf, Hans-Christian Hege, Bernd Noack, Michael Schlegel, Andreas Dillmann | Coherent structures in a transitional flow around a backward-facing step | Physics of Fluids, V. Ajaev, D. Willis (Eds.), p. S3, Vol.15, 2003 |
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Jesper Thomsen, Bruno Koller, Andreas Laib, Steffen Prohaska, Michael Giehl, Wolfgang Gowin | Comparison between Static Histomorphometric Measures Conducted by Traditionally 2D Histomorphometry and 3D μ-CT in Human Tibial Biopsies | 2nd European Congress ’Achievements in Space Medicine into Health Care Practice and Industry’, 2003 |
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Hans-Christian Hege | Creation and Visualization of Anatomical Models with Amira | Proc. of 3D Modelling 2003, p. 7pp., 2003 |
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Stefan Zachow, Evgeny Gladilin, Robert Sader, Hans-Florian Zeilhofer | Draw & Cut: Intuitive 3D Osteotomy Planning on Polygonal Bone Models | Computer Assisted Radiology and Surgery (CARS), pp. 362-369, 2003 |
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Malte (née Zöckler) | Efficient Visualization and Reconstruction of 3D Geometric from Neuro-Biological Confocal Microscope Scans | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2003 |
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Thomas Lange, Hans Lamecker, Martin Seebaß | Ein Softwarepaket für die modellbasierte Segmentierung anatomischer Strukturen | Proc. BVM 2003, pp. 111-116, 2003 |
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Brygg Ullmer, Andrei Hutanu, Werner Benger, Hans-Christian Hege | Emerging Tangible Interfaces for Facilitating Collaborative Immersive Visualizations | Proc. of NSF Lake Tahoe Workshop on Collaborative Virtual Reality and Visualization (extended abstract), Oliver Staadt (Ed.), 2003 |
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Hans Lamecker, Thomas Lange, Martin Seebaß | Erzeugung statistischer 3D-Formmodelle zur Segmentierung medizinischer Bilddaten | Proc. BVM 2003, pp. 398-403, Informatik aktuell, 2003 |
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Steffen Prohaska, Hans-Christian Hege, Michael Giehl, Wolfgang Gowin | Interactive Visualization to Support Quantification of Bone Biopsies | 2nd European Congress ’Achievements in Space Medicine into Health Care Practice and Industry’, 2003 |
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Ralf Kähler, Mark Simon, Hans-Christian Hege | Interactive Volume Rendering of Large Data Sets Using Adaptive Mesh Refinement Hierarchies | IEEE Transactions on Visualization and Computer Graphics, 9(3), pp. 341-351, 2003 |
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W. V. Dörffel, Yoshimi Sugano, Detlev Stalling, Liviu Coconu | Lasergestützte endoskopische Vermessung der großen Atemwege | Pneumonologie, Vol.57(3), pp. 503-509, 2003 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | On constitutive modeling of soft tissue for the long-term prediction of cranio-maxillofacial surgery outcome | International Congress Series, CARS2003, Computer Assisted Radiology and Surgery, Proceedings of the 17th International Congress and Exhibition, pp. 343-348, Vol.1256, 2003 |
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Hans-Christian Hege, Andrei Hutanu, Ralf Kähler, André Merzky, Thomas Radke, Edward Seidel, Brygg Ullmer | Progressive Retrieval and Hierarchical Visualization of Large Remote Data | Proceedings of the 2003 Workshop on Adaptive Grid Middleware, pp. 60-72, 2003 (preprint available as ) |
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Peter Saparin, Wolfgang Gowin, Alexei Zaikin, Jesper Thomsen, Steffen Prohaska, Hans-Christian Hege, Jürgen Kurths | Quantification of Changes in Spatial Structure of Human Bone Biopsies Using 3D Measures of Complexity | 14th IAA Humans in Space Symposium, 2003 |
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Peter Saparin, Wolfgang Gowin, Alexei Zaikin, Steffen Prohaska | Quantification of changes in human bone structure at different skeletal locations using measures of complexity | 2nd European Congress ’Achievements in Space Medicine into Health Care Practice and Industry’, 2003 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Realistic prediction of individual facial emotion expressions for craniofacial surgery simulations | Proc. SPIE medical Imaging 2003, Robert Galloway (Ed.), pp. 520-527, Vol.5029, 2003 |
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Holger Theisel, Tino Weinkauf, Hans-Christian Hege, Hans-Peter Seidel | Saddle Connectors - An Approach to Visualizing the Topological Skeleton of Complex 3D Vector Fields | Proc. IEEE Visualization 2003, pp. 225-232, 2003 |
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Visualization and Mathematics III | Hans-Christian Hege, Konrad Polthier (Eds.), Springer, 2003, ISBN: 3-540-01295-8 |
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2002 |
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Malte Westerhoff, Alexander Maye, Robert Brandt, Randolf Menzel | 3D Geometry Reconstruction in Neuroanatomy | International Neuroscience Summit Abstract Book, p. 49, 2002 |
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Stefan Zachow, Evgeny Gladilin, Adam Trepczynski, Robert Sader, Hans-Florian Zeilhofer | 3D Osteotomy Planning in Cranio-Maxillofacial Surgery: Experiences and Results of Surgery Planning and Volumetric Finite-Element Soft Tissue Prediction in Three Clinical Cases | Computer Assisted Radiology and Surgery (CARS), pp. 983-987, 2002 |
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Hans Lamecker, Thomas Lange, Martin Seebaß | A Statistical Shape Model for the Liver | MICCAI 2002, pp. 422-427, Lecture Notes in Computer Science 2489, 2002 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Adaptive Nonlinear Elastic FEM for Realistic Prediction of Soft Tissue in Craniofacial Surgery Simulations | Proc. SPIE Medical Imaging 2002, Seong K. Mun (Ed.), pp. 1-8, Vol.4681, 2002 |
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Thomas Lange, Hans Lamecker, Sebastian Eulenstein | Automatische Segmentierung von Lebergewebe für die präoperative Planung von Resektionen | 1. Jahrestagung der Deutschen Gesellschaft für Computer- Roboterassistierte Chirugie CURAC, 2002 |
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Alexei Zaikin, Peter Saparin, Steffen Prohaska, Jürgen Kurths, Wolfgang Gowin | Bone Modeling and Structural Measures of Complexity | Journal of Gravitational Physiology, Vol.9, pp. 175-176, 2002 |
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Tino Weinkauf, Holger Theisel | Curvature Measures of 3D Vector Fields and their Applications | Journal of WSCG, Václav Skala (Ed.), pp. 507-514, Vol.10, 2002 |
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Steffen Prohaska, Hans-Christian Hege | Fast Visualization of Plane-Like Structures in Voxel Data | Proceedings of IEEE Visualization 2002, Robert J. Moorhead, Markus Gross, Kenneth I. Joy (Eds.), pp. 29-36, 2002 |
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Wolfgang Gowin, Peter Saparin, Steffen Prohaska, Hans-Christian Hege, Dieter Felsenberg | Femoral Neck Fractures: Reasons for the Most Common Location of Fractures | Acta Orthop. Scand. (Suppl. 304), Vol.73, p. 26, 2002 |
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Hans-Christian Hege, Hartmut Schirmacher, Malte Westerhoff, Hans Lamecker, Steffen Prohaska, Stefan Zachow | From Image Data to Three-Dimensional Models - Case Studies on the Impact of 3D Patient Models | Proceedings of the Japan Korea Computer Graphics Conference 2002, 2002 |
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Hans-Christian Hege, André Merzky | GriKSL - Immersive Überwachung und Steuerung von Simulationen auf entfernten Supercomputern | DFN-Mitteilungen, Heft 59, pp. 5-7, 2002 |
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Hans-Christian Hege, Ralf Kähler, Edward Seidel, Thomas Radke | GriKSL zeigt Live-Demos auf der iGrid2002 | DFN-Mitteilungen, Heft 60, pp. 21-22, 2002 |
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Gabrielle Allen, André Merzky, Jarek Nabrzysk, Edward Seidel | GridLab - A Grid Application Toolkit and Testbed | Future Generation Computer Systems, Vol.18(8), pp. 1143-1153, 2002 |
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Gabrielle Allen, Dave Angulo, Tom Goodale, Thilo Kielmann, André Merzky, Jarek Nabrzysk, Juliusz Pukacki, Michael Russel, Thomas Radke, Edward Seidel, John Shalf, Ian Taylor | GridLab – Enabling Applications on the Grid: A Progress Report | Lecture Notes in Computer Science (LNCS), pp. 39-45, Vol.2536, 2002 |
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Liviu Coconu, Hans-Christian Hege | Hardware-Accelerated Point-Based Rendering of Complex Scenes | Proceedings of the 13th Eurographics Workshop on Rendering Techniques, Simon Gibson, Paul Debevec (Eds.), pp. 43-52, 2002 |
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Stephan Olbrich, Tino Weinkauf, André Merzky, Harald Knipp, Hans-Christian Hege, Helmut Pralle | Lösungsansätze zur Visualisierung im High Performance Computing und Networking Kontext | Zukunft der Netze - Die Verletzbarkeit meistern., J. von Knop (Ed.), pp. 269-279, 2002 |
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Michel Cosnard, André Merzky | Meta- and Grid-Computing | Lectures Notes in Computer Science, Burkhard Monien, Rainer Feldmann (Eds.), pp. 861-862, Vol.2400, 2002 |
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Hans-Florian Zeilhofer, Hans-Christian Hege | Operieren im Medizin-Grid | DFN-Mitteilungen, Heft 60, pp. 19-20, 2002 |
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Wolfgang Gowin, Peter Saparin, Dieter Felsenberg, Jürgen Kurths, Alexei Zaikin, Steffen Prohaska, Hans-Christian Hege | Regional Structural Skeletal Discordance Assessed by Measures of Complexity | 2002 |
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Ralf Kähler, Donna Cox, Robert Patterson, Stuart Levy, Hans-Christian Hege, Tom Abel | Rendering The First Star in The Universe - A Case Study | Proceedings of IEEE Visualization 2002, Robert J. Moorhead, Markus Gross, Kenneth I. Joy (Eds.), pp. 537-540, 2002 |
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Adam Trepczynski | Schnittmodellierung auf triangulierten Polygonoberflächen | Master's thesis, Technische Universität Berlin, Fachbereich IV, Institut für Technische Informatik (H.U. Lemke, K. Köchy) und ZIB, 2002 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Shape-based Modeling Approach for the Estimation of Individual Facial Mimics in Craniofacial Surgery Planning | Proc. SPIE Medical Imaging 2002: Visualization, Image-Guided Procedures, and Display, Seong Mun (Ed.), pp. 242-248, Vol.4681, 2002 |
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Hubert Busch, André Merzky | Supercomputer: Auf zwei Standorte verteiltes Rechnersystem wird im Wissenschaftsnetz zum virtuellen Supercomputer | DFN-Mitteilungen, Heft 59, pp. 8-10, 2002 |
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Ralf Kähler, Hans-Christian Hege | Texture-based volume rendering of adaptive mesh refinement data | The Visual Computer, 18(8), pp. 491-492, 2002 |
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Karlheinz Rein, Malte Zöckler, Michael T. Mader, Cornelia Grübel, Martin Heisenberg | The Drosophila Standard Brain | Current Biology, 12(3), pp. 227-231, 2002 |
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Stefan Zachow, Evgeny Gladilin, Hans-Christian Hege, Peter Deuflhard | Towards Patient Specific, Anatomy Based Simulation of Facial Mimics for Surgical Nerve Rehabilitation | Computer Assisted Radiology and Surgery (CARS), pp. 3-6, 2002 |
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Malte Zöckler, Detlev Stalling | Using confocal microscopy and advanced 3-d visualization to investigate the Drosophila brain | Scientific Computing & Instrumentation, 2002 |
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Tino Weinkauf, Holger Theisel | Vector Field Metrics Based on Distance Measures of First Order Critical Points | Journal of WSCG, Short Communication Papers, Václav Skala (Ed.), pp. 121-128, Vol.10, 2002 |
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Steffen Prohaska, Hans-Christian Hege, Michael Giehl, Wolfgang Gowin | Visual Analysis of Trabecular Bone Structure | Journal of Gravitational Physiology, Vol.9 (1), pp. 171-172, 2002 |
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Thomas Hierl, Gert Wollny, Stefan Zachow, Rainer Klöppel | Visualisierung von Knochen und Weichteilveränderungen in der Distraktionsosteogenese des Mittelgesichtes | Proc. 10. Jahrestagung der Deutschen Gesellschaft für Schädelbasischirurgie, pp. 111-116, 2002 |
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Johannes Schmidt-Ehrenberg, Daniel Baum, Hans-Christian Hege | Visualizing Dynamic Molecular Conformations | Proceedings of IEEE Visualization 2002, Robert J. Moorhead, Markus Gross, Kenneth I. Joy (Eds.), pp. 235-242, 2002 |
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Christoph Best, Hans-Christian Hege | Visualizing and Identifying Conformational Ensembles in Molecular Dynamics Trajectories | IEEE Computing in Science & Engineering, Vol.4(3), pp. 68-75, 2002 |
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Thilo Böhm | Web Service Based Data Management for Grid Applications | Euroweb 2002 - The Web and the GRID, pp. 126-135, 2002 |
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2001 |
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Stefan Zachow, Evgeny Gladilin, Hans-Florian Zeilhofer, Robert Sader | 3D Osteotomieplanung in der MKG-Chirurgie unter Berücksichtigung der räumlichen Weichgewebeanordnung | Rechner- und sensorgestützte Chirurgie, GI Proc. zur SFB 414 Tagung, pp. 217-226, Lecture Notes in Informatics, 2001 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | A Biomechanical Model for Soft Tissue Simulation in Craniofacial Surgery | Medical Imaging and Augmented Reality (MIAR), pp. 137-141, 2001 |
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Gabrielle Allen, Werner Benger, Thomas Dramlitsch, Tom Goodale, Hans-Christian Hege, Gerd Lanfermann, André Merzky, Thomas Radke, Edward Seidel | Cactus Grid Computing: Review of Current Devlopment | Proceedings of Euro-Par 2001: 7th International Euro-Par Conference on Parallel Processing, Rizos Sakellariou, Jon Keane, John Gurd, Len Freeman (Eds.), pp. 817-824, Vol.2150, Lectures Notes in Computer Science, 2001 |
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Gabrielle Allen, Werner Benger, Thomas Dramlitsch, Tom Goodale, Hans-Christian Hege, Gerd Lanfermann, André Merzky, Thomas Radtke, Edward Seidel, John Shalf | Cactus Tools for Grid Applications | Cluster Computing, 4(3), pp. 179-188, 2001 |
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Oliver Sander | Constructing Boundary and Interface Parametrizations for Finite Element Solvers | Master's thesis, Freie Universität Berlin, Institut für Informatik (S. Felsner) and ZIB (H.-C. Hege), 2001 |
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Heinz Stockinger, Omer F. Rana, Reagan Moore, André Merzky | Data Management for Grid Environments | Proceedings of HPCN Europe 2001 - 9th International Conference on High-Performance Computing and Networking, Louis Hertzberger, Alfons G. Hoekstra, Roy Williams (Eds.), pp. 151-160, Vol.2110, Lectures Notes in Computer Science, 2001 |
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Gabrielle Allen, Thomas Dramlitsch, Tom Goodale, Gerd Lanfermann, Thomas Radke, Edward Seidel, Thilo Kielmann, Kees Verstoep, Zoltán Balaton, Péter Kacsuk, Ferenc Szalai, Jörn Gehring, Axel Keller, Achim Streit, Ludek Matyska, Miroslav Ruda, Ales Krenek, Harald Knipp, André Merzky, Alexander Reinefeld, Florian Schintke, Bogdan Ludwiczak, Jarek Nabrzyski, Juliusz Pukacki, Hans-Peter Kersken, Giovanni Aloisio, Massimo Cafaro, Wolfgang Ziegler, Michael Russell | Early experiences with the EGrid testbed | Proceedings First IEEE/ACM International Symposium on Cluster Computing and the Grid, pp. 130-137, 2001 |
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Evgeny Gladilin, Stefan Zachow, Hans-Christian Hege, Peter Deuflhard | FE-based heuristic approach for the estimation of person-specific facial mimics | Proceedings of Euro-Par 2001: 5-th International Symposium on Computer Methods, Biomechanics and Biomedical Engineering, 2001 |
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Stefan Zachow, Evgeny Gladilin, Hans-Florian Zeilhofer, Robert Sader | Improved 3D Osteotomy Planning in Cranio-Maxillofacial Surgery | Proc. Medical Image Computing and Computer-Assisted Intervention (MICCAI 2001), pp. 473-481, Lectures Notes in Computer Science, 2001 |
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Hans-Christian Hege, Konrad Polthier, Martin Rumpf | MathInsight 2002 | 2001 |
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Liviu Coconu | Semi-automatic Segmentation of Bronchoscopic Images | Master's thesis, "Politehnica" University of Bucharest, Faculty of Automatics and Computers, Computer Science and Engineering Department (V. Cristea) and ZIB (D. Stalling), 2001 |
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Valentin-Florian Zaharescu | Semi-automatic Volume Slices Alignment for 3D Reconstruction and Analysis | Master's thesis, "Politehnica" University of Bucharest, Faculty of Automatics and Computers, Computer Science and Engineering Department (V. Cristea) and ZIB (D. Stalling), 2001 |
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Evgeny Gladilin, Stefan Zachow, Hans-Christian Hege, Peter Deuflhard | Towards a Realistic Simulation of Individual Facial Mimics | Vision Modeling and Visualization 2001 (VMV), pp. 129-134, 2001 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Validation of a Linear Elastic Model for Soft Tissue Simulation in Craniofacial Surgery | Proc. SPIE Medical Imaging 2001, Seong Mun (Ed.), pp. 27-35, Vol.4319, 2001 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Validierung eines linear elastischen Modells für die Weichgewebesimulation in der Mund-Kiefer-Gesichtschirurgie | Bildverarbeitung für die Medizin (BVM), pp. 57-61, 2001 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Virtual Fibers: A Robust Approach for Muscle Simulation | IX Mediterranean Conference on Medical and Biological Engineering and Computing (MEDICON), pp. 961-964, 2001 |
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Johannes Schmidt-Ehrenberg, Daniel Baum, Hans-Christian Hege | Visually stunning - Molecular conformations | The Biochemist, 23(5), pp. 22-26, 2001 |
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2000 |
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Peter Deuflhard, Martin Weiser, Martin Seebaß | A New Nonlinear Elliptic Multilevel FEM Applied to Regional Hyperthermia | Comput. Visual. Sci., Vol.3, pp. 1-6, 2000 (preprint available as ) |
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Johanna Gellermann, Peter Wust, Detlev Stalling, Martin Seebaß, Jacek Nadobny, Hans-Christian Hege, Peter Deuflhard, Roland Felix | Clinical evaluation and verification of the hyperthermia treatment planning system HyperPlan | Int. J. Radiat. Oncol. Biol. Phys., Vol.47(4), pp. 1145-1156, 2000 |
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Hans-Florian Zeilhofer, Robert Sader, Victor Apostolescu, Karl-Heinz Hoffmann, Martin Göbel, Hans-Christian Hege | Die Bedeutung breitbandiger und leistungsfähiger Kommunikationsinfrastrukturen für die kraniomaxillofaziale Chirurgie - Möglichkeiten der netzbasierten Bildverarbeitung | Bildverarbeitung für die Medizin 2000 (Abstract), 2000 |
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Werner Benger, Hans-Christian Hege, André Merzky, Thomas Radke, Edward Seidel | Efficient Distributed File I/O for Visualization in Grid Environments | Simulation and Visualization on the Grid, Springer Verlag, pp. 1-6, 2000 (preprint available as ) |
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Peter Wust, Rudolf Beck, Jörn Berger, Horst Fähling, Martin Seebaß, Waldemar Wlodarczyk, Werner Hoffmann, Jacek Nadobny | Electric Field Distributions in a Phased-Array Applicator with 12 Channels - Measurements and Numerical Simulations | Medical Physics, Vol.27, pp. 2565-2579, 2000 |
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Martin Seebaß, Rudolf Beck, Johanna Gellermann, Jacek Nadobny, Peter Wust | Electromagnetic Phased Arrays for Regional Hyperthermia - Optimal Frequency and Antenna Arrangement | Int. J. Hyperthermia, Vol.17(4), pp. 321-326, 2000 (preprint available as ) |
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Malte Zöckler, Detlev Stalling, Hans-Christian Hege | Fast and Intuitive Generation of Geometric Shape Transitions | The Visual Computer, Vol.16(5), pp. 241-253, 2000 (preprint available as ) |
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Stefan Zachow, Evgeny Gladilin, Hans-Christian Hege, Peter Deuflhard | Finite-Element Simulation of Soft Tissue Deformation | Computer Assisted Radiology and Surgey (CARS), pp. 23-28, 2000 |
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Michael Giehl, Wolfgang Gowin, Klaus Engelke, Marek Karolczak, Hans-Christian Hege, Johannes Schmidt-Ehrenberg, Dieter Felsenberg | Micro-CT zur Darstellung kontrastgebender Strukturen im Weichteilgewebe | 81. Deutscher Röntgenkongress, 2000 |
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Peter Deuflhard, Hans-Christian Hege, Martin Seebaß | Progress Towards a Combined MRI/Hyperthermia System | Proceedings Second International Congress HIGH CARE 2000, 2000 (preprint available as ) |
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Hans-Christian Hege, Werner Benger, André Merzky, Friedbert Kasper, Thomas Radke, Edward Seidel | Schwarze Löcher in Sicht - Immersive Überwachung und Steuerung von Remote-Simulationen | DFN-Mitteilungen, 52(2), pp. 4-6, 2000 |
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Gabrielle Allen, Werner Benger, Tom Goodale, Hans-Christian Hege, Gerd Lanfermann, André Merzky, Thomas Radke, Edward Seidel, John Shalf | The Cactus Code: A Problem Solving Environment for the Grid | High Performance Distributed Computing (HPDC-2000), pp. 253-260, 2000 |
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Christophe Fiorio, Jens Gustedt, Thomas Lange | Union-find volume segmentation | In 7th International Workshop on Combinatorial Image Analysis (IWCIA’00), pp. 181-197, 2000 |
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Hans-Christian Hege | Virtuelle Experimente Sieben Hügel - Bilder und Zeichen des 21. Jahrhunderts | 2000 |
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Werner Benger, Hans-Christian Hege, Stefan Heusler | Visions of Numerical Relativity | Proceedings of the 3d International Conference on the Interaction of Art and Fluid Mechanics (SCART2000), pp. 239-246, 2000 (preprint available as ) |
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1999 |
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Jacek Nadobny, Waldemar Wlodarczyk, Peter Wust, Gerhard Mönich, Peter Deuflhard, Roland Felix | 3D Phased Array Applicator for Hyperthermia Treatment in Pelvis | Proc. XXVIth General Assembly of International Union of Radio Science (URSI), p. 648, 1999 |
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Andreas Hein, Tim Lueth, Stefan Zachow, Malte Stien | A 2D Planning Sytem for Robot-Assisted Interventions | Computer Assisted Radiology and Surgery, p. 1049, 1999 |
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Karlheinz Rein, Malte Zöckler, Martin Heisenberg | A Deformable 3D Model of the Fly Brain | Proc. Int. Conf. Neurobiology of Drosophila, 1999 |
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Karlheinz Rein, Malte Zöckler, Martin Heisenberg | A Quantitative 3D Model of the Flybrain: Shape and Arrangement of Neuropils | Proc. First Vogt-Brodmann Symposium: Perspectives of Architectonic Brain Mapping, 1999 |
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Karlheinz Rein, Malte Zöckler, Martin Heisenberg | A Quantitative Three-Dimensional Model of the Drosophila Optic Lobes | Current Biology, 9(2), pp. 93-96, 1999 |
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Daniel Runge | Algorithms and Methods for the Visualization of Molecular Surfaces and Interfaces | Master's thesis, Humboldt-Universität zu Berlin, Fachbereich für Informatik (W. Reisig) and ZIB (H.-C. Hege), 1999 |
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Stefan Zachow | Design and Implementation of a planning system for episthetic surgery | Master's thesis, Technische Universität Berlin, Fachbereich Informatik (T.C. Lüth) und ZIB (D. Stalling), Tim Lüth, Detlev Stalling (Advisors), 1999 |
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Detlev Stalling | Fast Texture-Based Algorithms for Vector Field Visualization | Shaker, 1999, ISBN: 3-8265-4835-3 (preprint available as ) |
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André Merzky | Fernsteuerung und Fernüberwachung von verteilten Anwendungen | RRZN, Universität Hannover, 1999 |
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Natascha Westerhoff | Geometrische Methoden zur 3D-Segmentierung | Master's thesis, Technische Universität Berlin, Fachbereich Mathematik (U. Pinkall, K. Polthier) und ZIB (H.-C. Hege), 1999 |
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Wilhelm Huisinga, Christoph Best, Frank Cordes, Rainer Roitzsch, Christof Schütte | Identification of Molecular Conformations via Statistical Analysis of Simulation Data | Comp. Chem., Vol.20, pp. 1760-1774, 1999 (preprint available as ) |
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Jens Lang, Bodo Erdmann, Martin Seebaß | Impact of Nonlinear Heat Tansfer on Temperature Control in Regional Hypertermia | IEEE Trans. Biomed. Engrg., Vol.46, pp. 1129-1138, 1999 (preprint available as ) |
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Peter Wust, Jacek Nadobny, Martin Seebaß, Detlev Stalling, Johanna Gellermann, Hans-Christian Hege, Peter Deuflhard | Influence of Patient Models and Numerical Methods on Predicted Power Deposition Patterns | Int. Journal Hyperthermia, 15(6), pp. 519-540, 1999 |
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Detlev Stalling, Martin Seebaß, Stefan Zachow | Mehrschichtige Oberflächenmodelle zur computergestützten Planung in der Chirurgie | Bildverarbeitung für die Medizin 1999 - Algorithmen, Anwendungen, pp. 203-207, 1999 (preprint available as ) |
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Werner Benger, Ian Foster, Jason Novotny, Edward Seidel, John Shalf, Warren Smith, Paul Walker | Numerical Relativity in a Distributed Environment | Proceedings of the Ninth SIAM Conference on Parallel Processing for Scientific Computing, 1999 |
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Stefan Zachow, Tim Lueth, Detlev Stalling, Andreas Hein, Martin Klein, Horst Menneking | Optimized Arrangement of Osseointegrated Implants: A Surgical Planning System for the Fixation of Facial Protheses | Computer Assisted Radiology and Surgery (CARS’99), pp. 942-946, 1999 |
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Thomas Lange | Regionenbasierte Segmentierungsverfahren für dreidimensionale biomedizinische Bilddaten | Master's thesis, Technische Universität Berlin, Fachbereich Mathematik (J. Gustedt) und ZIB (P. Deuflhard), 1999 |
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Gabrielle Allen, Tom Goodale, Gerd Lanfermann, Edward Seidel, Werner Benger, Hans-Christian Hege, André Merzky, Joan Masso, John Shalf | Solving Einstein’s Equations on Supercomputers | IEEE Computer, pp. 52-59, 1999 |
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Waldemar Wlodarczyk, Jacek Nadobny, Peter Wust, Gerhard Mönich, Peter Deuflhard, Roland Felix | Systematic Design of Antennas for a Cylindrical 3D Phased Array Hyperthermia Applicator | Proc. 1999 IEEE Antennas and Propagation Society International Symposium, pp. 1004-1007, 1999 |
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Robert Brandt, Dagmar Malun, A. Steege, Malte Zöckler, Randolf Menzel | Three Dimensional Reconstruction of Honey Bee Mushroom Bodies | Annual Meeting of the Society for Neuroscience, Abstr. 25, p. 861, 1999 |
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Karlheinz Rein, Malte Zöckler, Martin Heisenberg | Towards a Quantative 3D Model of the Fly Brain | Proc. 27th Göttingen Neurobiology Report, H. Schnitzler (Ed.), p. 742, 1999 |
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Jörg Gotthardt, Carola Blömer, Detlev Stalling | Visualization of Groundwater Flow Using Line Integral Convolution | Proc. ModelCARE 99, 1999 |
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1998 |
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Jacek Nadobny, Dennis Sullivan, Peter Wust, Martin Seebaß, Peter Deuflhard, Roland Felix | A High-Resolution Interpolation at Arbitary Interfaces for the FDTD Method | IEEE Trans. Microwave Theory Tech., 46(11), pp. 1759-1766, 1998 |
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Christoph Best | A Simple C++ Library for Manipulating Scientific Data Sets as Structured Data | ZIB Technical Report TR 98-06, 1998 |
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Peter Deuflhard, Martin Seebaß | Adaptive Multilevel FEM as Decisive Tools in the Clinical Cancer Therapy Hyerthermia | Proc. Eleventh International Conference on Domain Decomposition Methods in Sciences and Engineering, Choi-Hong Lai, Petter Bjorstad, Mark Cross, Olof Widlund (Eds.), pp. 410-421, 1998 (preprint available as ) |
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Waldemar Wlodarczyk, Jacek Nadobny, Horst Fähling, Peter Wust, Gerhard Mönich | Antennenkonzepte und Realisierungsbeispiele für die HF-Hyperthermie | ITG-Fachbericht 149 Antennen, VDE Verlag, pp. 335-338, 1998 |
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Hartmut Schirmacher, Malte Zöckler, Detlev Stalling, Hans-Christian Hege | Boundary Surface Shrinking - a Continuous Approach to 3D Center Line Extraction | Proc. of IMDSP’98, held in Alpbach, Bernd Girod, Heinrich Niemann, Hans Seidel (Eds.), pp. 25-28, 1998 |
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Wolfgang Kühn, Zuzana Kühn | Cutting High Dimensional Cakes | American Mathematical Monthly, 105(2), pp. 168-169, 1998 |
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Jacek Nadobny, Waldemar Wlodarczyk, Peter Wust, Horst Fähling, Gerhard Mönich, Peter Deuflhard, Roland Felix | Design and Optimization of Short Antennas for Phased-Array Hyperthermia Applicator | Proc. PIERS Progress in Electromagnetic Research Symposium, p. 839, 1998 |
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Ingmar Decker | Dokumentensuche über Bilder - Konzeption und Aufbau eines Image Retrieval Service für die Electronic Visualization Library | Master's thesis, Freie Universität Berlin, Institut für Publizistik- und Kommunikationswissenschaft, Arbeitsbereich Informationswissenschaft (R.D. Hennings) und ZIB (H.-C. Hege), 1998 |
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Peter Wust, Johanna Gellermann, Jürgen Beier, Susan Wegner, Wolfgang Tilly, Jens Tröger, Detlev Stalling, Hans-Christian Hege, Peter Deuflhard, Roland Felix | Evaluation of Segmentation Algorithms for Generation of Patient Models in Radiofrequency Hyperthermia | Phys. Med. Biol., Vol.43 (11), pp. 3295-3307, 1998 |
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Hartmut Schirmacher | Extracting Graphs from Three Dimensional Neuron Data Sets | Master's thesis, Universität Erlangen-Nürnberg, Institut für Maschinen und Datenverarbeitung (T. Ertl) und ZIB (H.-C. Hege), 1998 |
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Hans-Christian Hege, Detlev Stalling | Fast LIC with Piecewise Polynomial Filter Kernels | Mathematical Visualization - Algorithms and Applications, Hans-Christian Hege, Konrad Polthier (Eds.), Springer-Verlag Berlin, pp. 295-314, 1998 |
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Hans-Christian Hege, Konrad (Eds.) | Mathematical Visualization - Algorithms, Applications, and Numerics | Springer: Heidelberg, 1998, ISBN: ISBN 3-540-63991-8 |
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Martin Seebaß, Detlev Stalling, Hans-Christian Hege, Peter Wust, Roland Felix, Peter Deuflhard | New Features of HyperPlan, a Hyperthermia Planning System | Proc. Hyperthermia in Clincal Oncology, p. 16, 1998 |
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Waldemar Wlodarczyk, Jacek Nadobny, Peter Wust, Horst Fähling, Adel Salah, Gerhard Mönich, Roland Felix | Numerical Studies for Electromagnetic Compatibility of Phased Array Hyperthermia Applicator and Magnetic Resonance Tomography | Proc. PIERS Progress in Electromagnetic Research Symposium, p. 840, 1998 |
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Jacek Nadobny, Peter Wust, Horst Fähling, Detlev Stalling, Martin Seebaß, Peter Deuflhard, Roland Felix | Numerical and Experimental Evaluation of E-Field and Absorbed Power in the Pelvic Region Using a Bone-Equivalent Phantom | Proc. PIERS Progress in Electromagnetic Research Symposium, p. 264, 1998 |
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Wolfgang Kühn | Rigorously Computed Orbits of Dynamical Systems without the Wrapping Effect | Computing, 61(1), pp. 47-67, 1998 |
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Detlev Stalling, Malte Zöckler, Hans-Christian Hege | Segmentation of 3D Medical Images with Subvoxel Accuracy | Proc. CARS ’98 Computer Assisted Radiology and Surgery, pp. 137-142, 1998 |
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Hans-Christian Hege, Konrad Polthier | VideoMath - Festival at ICM 98 | 1998, ISBN: 978-3-540-21385-7 |
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Ingmar Decker, Peter Müller, Daniel Limbach | VisInfo-Fachinformationsdienst Visualisierung | DFN-Mitteilungen, Vol.Heft 46, pp. 6-7, 1998 |
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Johannes Schmidt-Ehrenberg | Visualisierung chemischer Ratennetzwerke | Master's thesis, Technische Universität Berlin, Institut für Astronomie und Astrophysik (E. Sedlmayer) und ZIB (P. Deuflhard), 1998 |
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Waldemar Wlodarczyk, Jacek Nadobny, Peter Wust, Gerhard Mönich, Roland Felix | Whole Body Hyperthermia Applicator Inside MR Systems: Simulation of Influence of RF Shield of MR Scanner on the Performance of Hyperthermia Applicator | Proc. ISMRM Inter. Soc Magn. Reson. Med. 6th Scientific Meeting, p. 651, 1998 |
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1997 |
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Jacek Nadobny, Peter Wust, Detlev Stalling, Hans-Christian Hege, Peter Deuflhard, Roland Felix | A Quantitative Comparison Between VSIE and the FDTD Method Using Electrically Equivalent Patient and Antenna Models | Proceedings of 16th Annual Meeting of the European Society for Hyperthermic Oncology ESHO-97, p. 145, 1997 |
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Susan Wegner, Detlev Stalling, Hans-Christian Hege, H. Oswald, E. Fleck | Die 3D-Wasserscheidentransformation auf Graphenebene - eine Anwendung für die Hyperthermieplannung | Digitale Bildverarbeitung in der Medizin, Tagungsband zum 5. Freiburger Workshop, B. Arnolds, H. Müller, D. Saupe, Thomas Tolxdorff (Eds.), pp. 31-36, 1997 |
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Detlev Stalling, Malte Zöckler, Hans-Christian Hege | Fast Display of Illuminated Field Lines | IEEE Transactions on Visualization and Computer Graphics, 3(2), pp. 118-128, 1997 (preprint available as ) |
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Peter Deuflhard, Martin Seebaß, Detlev Stalling, Rudolf Beck, Hans-Christian Hege | Hyperthermia Treatment Planning in Clinical Therapy | Computational Physics, Chemistry and Biology (Proceedings of the 15th IMACS World Congress 1997 on Scientific Computation 3, Modelling and Applied Mathematics), Achim Sydow (Ed.), pp. 9-17, 1997 (preprint available as ) |
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Detlev Stalling, Hans-Christian Hege | LIC on Surfaces | Texture Synthesis with Line Integral Convolution, Siggraph 97, 24. Int. Conf. Computer Graphics and Interactive Techniques, pp. 51-64, 1997 |
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Hans-Christian Hege, Detlev Stalling | LIC: Acceleration, Animation, Zoom | Texture Synthesis with Line Integral Convolution, Siggraph 97, 24. Int. Conf. Computer Graphics and Interactive Techniques, pp. 17-49, 1997 |
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Michael Ganß | LR-Zerlegung dünnbesetzter Matrizen für Parallelrechner mit verteiltem Speicher | Master's thesis, Technische Universität Berlin, Fachbereich Informatik (S. Jähnichen, P. Pepper) und ZIB (R. Wunderling), 1997 |
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Malte Zöckler | Molekulardynamische Simulation des Wachstums zirkumstellarer Silikatstaubteilchen | Master's thesis, Technische Universität Berlin, Institut für Astronomie und Astrophysik (E. Sedlmayer) und ZIB (P. Deuflhard), 1997 |
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Olaf Paetsch, Detlev Stalling, Manfred Korzen | Online-Visualisierung von Brandversuchen an Bauteilen | Konrad-Zuse-Zentrum für Informationstechnik, Berlin (ZIB) / Bundesanstalt für Materialfoschung und -prüfung (BAM) Berlin, 1997 |
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Peter Wust, Jacek Nadobny, Johanna Gellermann, Martin Seebaß, Detlev Stalling, Hans-Christian Hege, Peter Deuflhard, Roland Felix | Patient Models and Algorithms for Hyperthermia Planning | Proceedings of the 16th Annual Meeting of the European Society for Hyperthermic Oncology ESHO-97, 1997 |
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Martin Seebaß, Detlev Stalling, Malte Zöckler, Hans-Christian Hege, Peter Wust, Roland Felix, Peter Deuflhard | Surface Mesh Generation for Numerical Simulations of Hyperthermia Treatments | Proceedings of the 16th Annual Meeting of the European Society for Hyperthermic Oncology (ESHO-97), p. 146, 1997 |
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Hans-Christian Hege, Konrad (Eds.) | Visualization and Mathematics - Experiments, Simulations and Environments | Springer-Verlag, Berlin/Heidelberg, 1997, ISBN: ISBN 3-540-61269-6 |
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1996 |
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Jacek Nadobny, Peter Wust, Martin Seebaß, Peter Deuflhard, Roland Felix | A Volume Surface Integral Equation Method for Solving Maxwell’s Equations in Electrically Inhomogeneous Media Using Tetrahedral Grids | IEEE Transactions Microwave Theory Techn., 44(4), pp. 543-554, 1996 |
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Rudolf Beck, Hans-Christian Hege, Martin Seebaß, Peter Wust, Peter Deuflhard, Roland Felix | Adaptive Finite Element Codes for Numerical Calculations in Hyperthermia Treatment Planning | Proceedings of the 17th Congress on Hyperthermic Oncology, pp. 515-517, Vol.2, 1996 |
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Thomas Anders | Effiziente Algorihmen zur Isoflächengenerierung aus Volumendaten | Master's thesis, Humboldt-Universität zu Berlin, Institut für Informatik (G. Giessmann) und ZIB (H.-C. Hege, D. Stallling), 1996 |
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Henrik Battke | Entwicklung textur-basierter Verfahren zur Vektorfeldvisualisierung | Master's thesis, Humboldt-Universität zu Berlin, Institut für Informatik und ZIB (H.-C. Hege, D. Stallling), 1996 |
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Henrik Battke, Detlev Stalling, Hans-Christian Hege | Fast Line Integral Convolution for Arbitrary Surfaces in 3D | Visualization and Mathematics 1997, Hans-Christian Hege, Konrad Polthier (Eds.), Springer, Heidelberg, pp. 181-195, 1996 (preprint available as ) |
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Detlev Stalling, Martin Seebaß, Hans-Christian Hege, Peter Wust, Peter Deuflhard, Roland Felix | HyperPlan - an Integrated System for Treatment Planning in Regional Hyperthermia | Proceedings of the 17th Congress on Hyperthermic Oncology, pp. 552-554, Vol.2, 1996 |
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Detlev Stalling, Hans-Christian Hege | Intelligent Scissors for Medical Image Segmentation | Tagungsband zum 4. Freiburger Workshop Digitale Bildverarbeitung in der Medizin, pp. 32-36, 1996 |
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Malte Zöckler, Detlev Stalling, Hans-Christian Hege | Interactive Visualization of 3D-Vector Fields Using Illuminated Streamlines | Proc. IEEE Visualization 1996, pp. 107-113, 1996 |
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Rudolf Beck, Peter Deuflhard, Hans-Christian Hege, Martin Seebaß, Detlev Stalling | Numerical Algorithms and Visualization in Medical Treatment Planning | Visualization and Mathematics 1997, Hans-Christian Hege, Konrad Polthier (Eds.), Springer, Heidelberg, pp. 303-328, 1996 (preprint available as ) |
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Malte Zöckler, Detlev Stalling, Hans-Christian Hege | Parallel Line Integral Convolution | Proc. First Eurographics Workshop on Parallel Graphics and Visualization, pp. 111-128, 1996 |
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Roland Wunderling | Paralleler und objektorientierter Simplex-Algorithmus | Master's thesis, Technische Universität Berlin, Fachbereich Mathematik (G. Ziegler) und ZIB (M. Grötschel), 1996 |
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Hans-Christian Hege | Problems and Solutions: Product of Chebyshev Polynomials | Orthogonal Polynomials and Special Functions, Vol.6 (2), p. 12, 1996 |
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Manfred Korzen, Robert Schriever, Kai-Uwe Ziener, Olaf Paetsch, Gerd Zumbusch | Real-Time 3-D Visualization of Surface Temperature Fields Measured by Thermocouples on Steel Strutures in Fire Engineering | Proc. Int. Symposium Local Strain and Temperature Measurements in Non-Uniform Fields at Elevated Temperatures, J. al. Ziebs (Ed.), pp. 253-262, 1996 |
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Peter Wust, Martin Seebaß, Jacek Nadobny, Peter Deuflhard, Gerhard Mönich, Roland Felix | Simulation Studies Promote Technological Development of Radiofrequency Phased Array Hyperthermia | Int. Journal of Hyperthermia, Vol.12, pp. 477-494, 1996 |
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Jacek Nadobny, Peter Wust, Waldemar Wlodarczyk, Martin Seebaß, Peter Deuflhard, Gerhard Mönich, Roland Felix | Simulation Studies for Combination of Hyperthermia and Magnetic Resonance Systems | Proceedings of the 17th Congress on Hyperthermic Oncology, pp. 549-551, Vol.2, 1996 |
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Martin Seebaß, Detlev Stalling, Jacek Nadobny, Peter Wust, Roland Felix, Peter Deuflhard | Three-Dimensional Finite Elements Mesh Generation for Numerical Simulations of Hyperthermia Treatments | Proceedings of the 17th Congress on Hyperthermic Oncology, pp. 547-548, Vol.2, 1996 |
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Thomas Brenner | Volume Rendering - Ein Projektionsansatz für den Cray T3D | Master's thesis, Humboldt-Universität zu Berlin, Institut für Informatik (C. Polze) und ZIB (H.-C. Hege, D. Stallling), 1996 |
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Hans-Christian Hege, Tobias Höllerer, Detlev Stalling | Volume Rendering: Mathematical Models and Algorithmic Aspects | Partielle Differentialgleichungen, Numerik und Anwendungen, Konferenzen des Forschungszentrum Jülich GmbH, pp. 227-255, 1996 (preprint available as ) |
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1995 |
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Hans-Christian Hege, Hinnerk Stüben | Daten "sehen" - Wissenschaftliche Visualisierung im RTB Berlin | DFN Mitteilungen, Vol.38, pp. 10-12target, 1995 |
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Tobias Höllerer, Klaus Tönnies, Hans-Christian Hege, Detlev Stalling | Der Einfluß der Datenapproximation bei Volume Rendering durch ein Emissions/Absorptions-Modell | Visualisierung - Dynamik und Komplexität, 1995 |
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Detlev Stalling, Hans-Christian Hege | Design and Implementation of a Hyperthermia Planning System | Tagungsband zum 4. Freiburger Workshop Digitale Bildverarbeitung in der Medizin, 1995 |
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Martin Seebaß, Peter Wust, Johanna Gellermann, Detlev Stalling, Jacek Nadobny, Roland Felix | Dreidimensionale Simulation der nicht-invasiven Radiowellen-Hyperthermie | Minimal Invasive Medizin, 6(1), pp. 29-35, 1995 |
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Detlev Stalling, Hans-Christian Hege | Fast and Resolution-Independent Line Integral Convolution | Proceedings of SIGGRAPH ’95, pp. 249-256, 1995 (preprint available as ) |
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Johanna Gellermann, Peter Wust, Detlev Stalling, Roland Felix | Optimisation Strategies in Hyperthermia Planning Compared with those Used in Radiotherapy Planning | Proc. CAR 95 Computer Assisted Radiology, pp. 1083-1087, 1995 |
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Daniel Limbach | Parallel MPEG-Encoder for Real-Time Online Encoding | SuParCup95 Adward Contribution 2nd Student Price, Supercomputer Seminar, 1995 |
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K. Akemi, Ph. deForcrand, M. Fujisaki, T. Hashimoto, Hans-Christian Hege, S. Hioki, O. Miyamura, A. Nakamura, M. Okuda, I. O. Stamatescu, Yoshio Tago, T. Takaishi | Quantum Chromodynamics Simulations on a Non-Dedicated Highly Parallel Computer | Comp. Phys. Comm, Vol.90, pp. 201-214, 1995 |
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Detlev Stalling, Hans-Christian Hege, Tobias Höllerer | Visualization and 3D-Interaction for Hyperthermia Treatment Planning | Proc. CAR 95 Computer Assisted Radiology, 9th International Symposium and Exhibition, pp. 1216-1222, 1995 |
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Tobias Höllerer | Volume Rendering auf irregulären Gittern - Theorie und Implementierung | Master's thesis, Technische Universität Berlin, Fachbereich Informatik (K. Tönnies) und ZIB (H.-C. Hege, D. Stallling), 1995 |
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Tobias Höllerer, Klaus Tönnies, Hans-Christian Hege, Detlev Stalling | Volume Rendering on Irregular Grids (Abstract) | Int. Workshop on Mathematics and Visualization, 1995 |
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1994 |
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Martin Grammel, Godmar Back, Roland Wunderling, Hans-Christian Hege | Ein paralleles C++/C-Programmiermodell für ein objektorientiertes B&C-Framework | GI/ITG-Workshop, Sept.1994, Mitteilungen der Fachgruppe PARS der Gesellschaft für Informatik (GI), pp. 50-59, Vol.13, 1994 |
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Roland Wunderling, Martin Grammel, Hans-Christian Hege | Parallele LU-Zerlegung großer, unsymmetrischer, dünn besetzter Matrizen bei hohen Kommunikationslatenzen | GI/ITG-Workshop, Sept.1994, Mitteilungen der Fachgruppe PARS der Gesellschaft für Informatik (GI), pp. 191-200, Vol.13, 1994 |
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Hans-Christian Hege | Scaling study of pure SU(3) theory - the QCD-TARO collaboration | Nucl. Phys. B Proc. Suppl., Vol.34, pp. 246-252, 1994 |
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Peter Deuflhard, Hans-Christian Hege | Scientific Computing in der Theoretischen Physik - Collected Abstracts | Tagung organisiert von der DMV-Fachgruppe Scientific Computing in Kooperation mit dem GAMM Fachausschuss Scientific Computing, 1994 (preprint available as ) |
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1993 |
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T. Hashimoto, Hans-Christian Hege | Autocorrelation in Updating Pure SU(3) Lattice Gauge Theory by the Use of Overrelaxed Algorithms | Nucl. Phys. B Proc. Suppl., Vol.30, pp. 253-256, 1993 |
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T. Hashimoto, Hans-Christian Hege | Monte Carlo Renormalization Study at Large beta in the Confinement Region | Nuclear Phys. B. Proc. Suppl., Vol.30, pp. 517-520, 1993 |
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Martin Grammel, Hans-Christian Hege, Roland Wunderling | On the Impact of Communication Latencies on Distributed Sparse LU Factorization. | ZIB-Report SC-93-28 |
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T. Hashimoto, Hans-Christian Hege | QCD on the Massively Parallel Computer AP 1000 | Int. J. Mod. Phys., 4(6), pp. 1233-1253, 1993 |
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T. Hashimoto, Hans-Christian Hege | Study of Spatial Size Effects in Quenched Wilson Hadron Spectroscopy at beta = 6.3 | Nucl. Phys. B Proc. Suppl., Vol.30, pp. 373-376, 1993 |
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1992 |
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Roland Wunderling, Hans-Christian Hege | AGIL - the Adaptable Graphical Interface Layer, Programmierer-Handbuch | p. 34pp., Interner Report, Konrad-Zuse-Zentrum für Informationstechnik Berlin (ZIB), Germany, 1992 |
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Hans-Christian Hege, Renate Knecht | Conference Report: Parallel Computing 91 | Parallel Computing, 18(4), pp. 473-476, 1992 |
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T. Hashimoto, Hans-Christian Hege | Hadron Spectroscopy on a 32^3 * 48 Lattice | Nucl. Phys. B Proc. Suppl. 26, pp. 293-295, 1992 |
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K. Akemi, Ph. de Forcrand, M. Fujisaki, T. Hashimoto, Hans-Christian Hege, S. Hioki, J. Makino, O. Miyamura, A. Nakamura, M. Okuda, I. O. Stamatescu, Yoshio Tago, T. Takaishi | QCD on the Highly Parallel Computer AP 1000 | Nucl. Phys. B Proc. Suppl. 26, pp. 644-646, 1992 |
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K. Akemi, Ph. de Forcrand, M. Fujisaki, T. Hashimoto, Hans-Christian Hege, S. Hioki, J. Makino, O. Miyamura, A. Nakamura, M. Okuda, I. O. Stamatescu, Yoshio Tago, T. Takaishi | SU(3) Renormalization Group Study on Parallel Computer AP 1000 | Nucl. Phys. B Proc. Suppl. 26, pp. 420-422, 1992 |
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1991 |
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Hans-Christian Hege, Hinnerk Stüben | Vectorization and Parallelization of Irregular Problems via Graph Coloring | Proc. of the ACM Int. Conf. on Supercomputing, pp. 47-56, 1991 (preprint available as ZIB-Report SC-90-16) |
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