The Forschungscampus ("Research Campus") MODAL is a platform for a public-private innovation partnership established by ZIB and Freie Universität Berlin together with more than 30 participating companies. The research campus MODAL---its acronym derived from "Mathematical Optimization and Data Analysis Laboratories"--- is located at ZIB where more than 60 researchers from the public and private sector are working alongside in jointly-run laboratories. Throughout its first phase (2014-2020) and its second phase (2020-2025), MODAL has been and will be funded by the German Ministry of Education and Research (BMBF) with about 2 million euros per year and supported by industry partners with an even larger amount.

MODAL’s main objective is joint research in the field of optimization of data-driven processes. We aim at  transferring process modeling, simulation and optimization (MSO), artificial intelligence (AI), and machine learning into cross-sectional technologies for digital production and business processes. Utilizing the rapid progress in basic research in these fields demands an integration of available technical and business data into simulation methods and learning systems for the precise prediction and optimal control of process flows. Associated with this are important open research questions for a multitude of applications in industry, trade, or various service sectors. Consequently, MODAL's research program is not restricted to a specific industry or technology, but aims at a broad spectrum.

The scientific and technical focus is on digital decision support systems, which are developed in cooperation with industrial partners and adapted to the relevant processes in the respective companies, catering to, e.g., available data. There is an increased need for action in Germany at this interface, whose importance has been recognized by the economy, politics, and society. At the same time, it has become clear that traditionally established procedures must be overcome if digitization is to unfold its full potential.

In the first funding phase, MODAL selected the areas of mobility, sustainable energy supply, secure communication, and personalized medicine as main topics of its research program. Despite this broad range of topics, these different areas are characterized by a strict coherence of content, which results from the mathematical methodology competence with a focus on MSO and AI and also on high-performance solvers (SynLab) and high-performance computing (HPCLab); the latter through the second funding phase. These horizontal core competencies are complemented by vertical application competencies in relation to specific data-driven economic processes (EnergyLab, MobilityLab, MedLab, NanoLab). The resulting competence matrix for the second funding phase is illustrated in the picture above.

Publications

2024
A multi-objective optimization strategy for district heating production portfolio planning. Proceedings of the 37th International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems – ECOS 2024, ECOS, 2024 (accepted for publication) Janina Zittel, Jan-Patrick Clarner, Christine Tawfik, Maxwell Dykes, Fabian Rivetta, Stephanie Riedmüller BibTeX
Research Campus MODAL
An Almost Feasible Sequential Linear Programming Algorithm European Control Conference 2024, 2024 (accepted for publication) David Kiessling, Charlie Vanaret, Alejandro Astudillo, Wilm Decré, Jan Swevers BibTeX
arXiv
Research Campus MODAL
An efficient solver for large-scale onshore wind farm siting including cable routing European Journal of Operational Research, 317(2), pp. 616-630, 2024 (epub ahead of print, preprint available as ZIB-Report 23-10) Jaap Pedersen, Jann Michael Weinand, Chloi Syranidou, Daniel Rehfeldt PDF (ZIB-Report)
PDF (ZIB-Report)
BibTeX
arXiv
DOI
Research Campus MODAL
Branch and cut for partitioning a graph into a cycle of clusters Combinatorial Optimization. ISCO 2024, Vol.14594, Lecture Notes in Computer Science, 2024 Leon Eifler, Jakob Witzig, Ambros Gleixner BibTeX
DOI
Research Campus MODAL
Certifying MIP-based presolve reductions for 0-1 integer linear programs Integration of Constraint Programming, Artificial Intelligence, and Operations Research. CPAIOR 2024, Vol.14742, Lecture Notes in Computer Science, 2024 Alexander Hoen, Andy Oertel, Ambros Gleixner, Jakob Nordström BibTeX
DOI
Research Campus MODAL
Characterising information gains and losses when collecting multiple epidemic model outputs Epidemics, Vol.47, 2024 (epub ahead of print) Katharine Sherratt, Ajitesh Srivastava, Kylie Ainslie, David E. Singh, Aymar Cublier, Maria Cristina Marinescu, Jesus Carretero, Alberto Cascajo Garcia, Nicolas Franco, Lander Willem, Steven Abrams, Christel Faes, Philippe Beutels, Niel Hens, Sebastian Müller, Billy Charlton, Ricardo Ewert, Sydney Paltra, Christian Rakow, Jakob Rehmann, Tim Conrad, Christof Schütte, Kai Nagel, Sam Abbott, Rok Grah, Rene Niehus, Bastian Prasse, Frank Sandmann, Sebastian Funk BibTeX
DOI
Research Campus MODAL
Chiral and directional optical emission from a dipole source coupled to a helical plasmonic antenna Appl. Phys. Lett., Vol.124, p. 231102, 2024 Lilli Kuen, Lorenz Löffler, Aleksei Tsarapkin, Lin Zschiedrich, Thorsten Feichtner, Sven Burger, Katja Höflich BibTeX
DOI
arXiv
Research Campus MODAL
Clinical Effectiveness of Ritonavir-Boosted Nirmatrelvir—A Literature Review Advances in Respiratory Medicine, 92(1), 2024 Sydney Paltra, Tim Conrad BibTeX
DOI
Research Campus MODAL
Computing eigenfrequency sensitivities near exceptional points Phys. Rev. Research, Vol.6, p. 023148, 2024 Felix Binkowski, Julius Kullig, Fridtjof Betz, Lin Zschiedrich, Andrea Walther, Jan Wiersig, Sven Burger BibTeX
DOI
arXiv
Research Campus MODAL
Cutting Plane Selection for Mixed-Integer Linear Programming Doctoral thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2024 Mark Turner BibTeX
Research Campus MODAL
Disease Burden and Inpatient Management of Children with Acute Respiratory Viral Infections during the Pre-COVID Era in Germany: A Cost-of-Illness Study Viruses, 16(4), 2024 Maren Alchikh, Tim Conrad, Patrick Obermeier, Xiaolin Ma, Brunhilde Schweiger, Onya Opota, Barbara Rath BibTeX
DOI
Research Campus MODAL
Effect of viscous forces on the interface stability of a tangential-velocity discontinuity in compressible fluids ZIB-Report 24-04 (under review) Thi Thai Le PDF
BibTeX
Research Campus MODAL
Efficient rational approximation of optical response functions with the AAA algorithm Laser Photonics Rev., 2024 (accepted for publication) Fridtjof Betz, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger, Felix Binkowski BibTeX
arXiv
Research Campus MODAL
Fabrication uncertainty guided design optimization of a photonic crystal cavity by using Gaussian processes J. Opt. Soc. Am. B, Vol.41, p. 850, 2024 Matthias Plock, Felix Binkowski, Lin Zschiedrich, Phillip-Immanuel Schneider, Sven Burger BibTeX
DOI
arXiv
Research Campus MODAL
Federated Learning with Deep Neural Networks: A Privacy-Preserving Approach to Enhanced ECG Classification IEEE Journal of Biomedical and Health Informatics, 2024 (epub ahead of print) Kuba Weimann, Conrad Tim BibTeX
DOI
Research Campus MODAL
Fiber-coupled solid-state-based single-photon sources Specialty Optical Fibers, pp. 345-384, Woodhead Publishing, 2024 Anna Musial, Grzegorz Sek, Philipp-Immanuel Schneider, Stephan Reitzenstein BibTeX
DOI
Research Campus MODAL
How Many Clues To Give? A Bilevel Formulation For The Minimum Sudoku Clue Problem Operations Research Letters, Vol.54, p. 107105, 2024 (preprint available as ZIB-Report 23-15) Gennesaret Tjusila, Mathieu Besançon, Mark Turner, Thorsten Koch PDF (ZIB-Report)
BibTeX
DOI
Research Campus MODAL
Learning continuous shape priors from sparse data with neural implicit functions Medical Image Analysis, Vol.94, p. 103099, 2024 Tamaz Amiranashvili, David Lüdke, Hongwei Bran Li, Stefan Zachow, Bjoern Menze BibTeX
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Research Campus MODAL
Linear stability of a simple shear layer between two parallel streams in a shallow water flow Physics Letters A, Vol.493, 2024 Thi Thai Le, Yasuhide Fukumoto, Thorsten Koch BibTeX
DOI
Research Campus MODAL
Machine Learning-based Assessment of Multiple Anatomical Structures in Medical Image Data for Diagnosis and Prediction of Knee Osteoarthritis Doctoral thesis, Technische Universität Berlin, Stefan Zachow (Advisor), 2024 Alexander Tack BibTeX
DOI
Research Campus MODAL
Making Mathematical Research Data FAIR: Pathways to Improved Data Sharing Scientific Data, Vol.11, 2024 (epub ahead of print) Tim Conrad, Eloi Ferrer, Daniel Mietchen, Larissa Pusch, Johannes Stegmuller, Moritz Schubotz BibTeX
DOI
Research Campus MODAL
Mathematical optimization based flow scenario generation for operational analysis of European gas transport networks based on open data ZIB-Report 24-03 Inci Yueksel-Erguen, Thorsten Koch, Janina Zittel PDF
BibTeX
URN
Research Campus MODAL
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data Nature Methods, 21(3), pp. 365-367, 2024 Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd M. H. Dijkstra, Yasset Perez-Riverol, Hannes Röst, Oliver Kohlbacher, Timo Sachsenberg BibTeX
DOI
Research Campus MODAL
Optimal discrete pipe sizing for tree-shaped CO2 networks OR Spectrum, 2024 (epub ahead of print, preprint available as ZIB-Report 22-15) Jaap Pedersen, Thi Thai Le, Thorsten Koch, Janina Zittel PDF (ZIB-Report)
BibTeX
DOI
Research Campus MODAL
Optimizing transient gas network control for challenging real-world instances using MIP-based heuristics Open Journal of Mathematical Optimization, Vol.5, 2024 (epub ahead of print, preprint available as ) Felix Hennings, Kai Hoppmann-Baum, Janina Zittel BibTeX
arXiv
DOI
Research Campus MODAL
Poles and zeros in non-Hermitian systems: Application to photonics Phys. Rev. B, Vol.109, p. 045414, 2024 Felix Binkowski, Fridtjof Betz, Remi Colom, Patrice Genevet, Sven Burger BibTeX
DOI
arXiv
Research Campus MODAL
Prize Collecting Steiner Tree Problem and its Variants Encyclopedia of Optimization, Panos M. Pardalos, Oleg A. Prokopyev (Eds.), Springer International Publishing: Cham, 2024 (accepted for publication) Jaap Pedersen, Ivana Ljubić BibTeX
Research Campus MODAL
Probabilistic Lookahead Strong Branching via a Stochastic Abstract Branching Model Integration of Constraint Programming, Artificial Intelligence, and Operations Research. CPAIOR 2024, Vol.14743, Lecture Notes in Computer Science, 2024 Gioni Mexi, Somayeh Shamsi, Mathieu Besançon, Pierre Bodic BibTeX
DOI
Research Campus MODAL
Research data for "Fabrication uncertainty guided design optimization of a photonic crystal cavity by using Gaussian processes" Zenodo, p. doi: 10.5281/zenodo.8131611, 2024 Matthias Plock, Felix Binkowski, Lin Zschiedrich, Phillip-Immanuel Schneider, Sven Burger BibTeX
DOI
Research Campus MODAL
Review and experimental benchmarking of machine learning algorithms for efficient optimization of cold atom experiments Mach. Learn. Sci. Technol., Vol.5, p. 025022, 2024 Oliver Anton, Victoria A. Henderson, Elisa Da Ros, Ivan Sekuliĉ, Sven Burger, Philipp-Immanuel Schneider, Markus Krutzik BibTeX
DOI
arXiv
Research Campus MODAL
SAT-Generated Initial Solutions for Integrated Line Planning and Turn-Sensitive Periodic Timetabling with Track Choice ZIB-Report 24-01 Niels Lindner, Berenike Masing PDF
BibTeX
URN
Research Campus MODAL
Safe and verified Gomory mixed integer cuts in a rational MIP framework SIAM Journal on Optimization, 34(1), 2024 Leon Eifler, Ambros Gleixner BibTeX
DOI
Research Campus MODAL
Scalable Frank-Wolfe on generalized self-concordant functions via simple steps SIAM Journal on Optimization, 34(3), 2024 Alejandro Carderera, Mathieu Besançon, Sebastian Pokutta BibTeX
DOI
Research Campus MODAL
Solving the optimal experiment design problem with mixed-integer convex methods 22nd International Symposium on Experimental Algorithms (SEA 2024), pp. 16:1-16:22, Vol.301, Leibniz International Proceedings in Informatics (LIPIcs), 2024 Deborah Hendrych, Mathieu Besançon, Sebastian Pokutta BibTeX
DOI
Research Campus MODAL
Source Code and Simulation Results: Chiral and directional optical emission from a dipole source coupled to a helical plasmonic antenna Zenodo, p. doi: 10.5281/zenodo.10598255, 2024 Lilli Kuen, Lorenz Löffler, Aleksei Tsarapkin, Lin Zschiedrich, Thorsten Feichtner, Sven Burger, Katja Höflich BibTeX
DOI
Research Campus MODAL
Source code and simulation results: Computing eigenfrequency sensitivities near exceptional points Zenodo, p. doi: 10.5281/zenodo.10715639, 2024 Felix Binkowski, Julius Kullig, Fridtjof Betz, Lin Zschiedrich, Andrea Walther, Jan Wiersig, Sven Burger BibTeX
DOI
Research Campus MODAL
Source code and simulation results: Efficient rational approximation of optical response functions with the AAA algorithm Zenodo, p. doi: 10.5281/zenodo.10853692, 2024 Fridtjof Betz, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger, Felix Binkowski BibTeX
DOI
Research Campus MODAL
The MIP workshop 2023 computational competition on reoptimization Mathematical Programming Computation, Vol.16, pp. 255-266, 2024 Suresh Bolusani, Mathieu Besançon, Ambros Gleixner, Timo Berthold, Claudia D'Ambrosio, Gonzalo Muñoz, Joseph Paat, Dimitri Thomopulos BibTeX
DOI
Research Campus MODAL
The SCIP Optimization Suite 9.0 ZIB-Report 24-02-29 Suresh Bolusani, Mathieu Besançon, Ksenia Bestuzheva, Antonia Chmiela, João Dionísio, Tim Donkiewicz, Jasper van Doornmalen, Leon Eifler, Mohammed Ghannam, Ambros Gleixner, Christoph Graczyk, Katrin Halbig, Ivo Hedtke, Alexander Hoen, Christopher Hojny, Rolf van der Hulst, Dominik Kamp, Thorsten Koch, Kevin Kofler, Jurgen Lentz, Julian Manns, Gioni Mexi, Erik Mühmer, Marc E. Pfetsch, Franziska Schlösser, Felipe Serrano, Yuji Shinano, Mark Turner, Stefan Vigerske, Dieter Weninger, Liding Xu PDF
BibTeX
URN
Research Campus MODAL
Unifying nonlinearly constrained nonconvex optimization 2024 (under review) Charlie Vanaret, Sven Leyffer BibTeX
Research Campus MODAL
Version 2 — RPExpand: Software for Riesz projection expansion of resonance phenomena SoftwareX, Vol.26, p. 101694, 2024 Fridtjof Betz, Felix Binkowski, Lilli Kuen, Sven Burger BibTeX
DOI
Research Campus MODAL
Which algorithm to select in sports timetabling? European Journal of Operational Research, 318(2), pp. 575-591, 2024 (epub ahead of print) David Van Bulck, Dries Goossens, Jan-Patrick Clarner, Angelos Dimitsas, Georg H. G. Fonseca, Carlos Lamas-Fernandez, Martin Mariusz Lester, Jaap Pedersen, Antony E. Phillips, Roberto Maria Rosati BibTeX
DOI
arXiv
Research Campus MODAL
2023
A Computational Study of Perspective Cuts Mathematical Programming Computation, Vol.15, pp. 703-731, 2023 (preprint available as ZIB-Report 21-07) Ksenia Bestuzheva, Ambros Gleixner, Stefan Vigerske PDF (ZIB-Report)
BibTeX
DOI
Research Campus MODAL
A Context-Aware Cutting Plane Selection Algorithm for Mixed-Integer Programming Operation Research Proceedings, 2023 (accepted for publication, preprint available as ZIB-Report 23-21) Mark Turner, Timo Berthold, Mathieu Besançon PDF (ZIB-Report)
BibTeX
Research Campus MODAL
A Robustness Analysis of Long Distance Train Crew Schedules in Germany Proceedings Of The Fifth Iinternational Conference On Railway Technology: Research, Development and Maintenance, Vol.CCC 1, 2023 Ralf Borndörfer, Boris Grimm, Stanley Schade BibTeX
DOI
Research Campus MODAL
A computational status update for exact rational mixed integer programming Mathematical Programming, Vol.197, pp. 793-812, 2023 Leon Eifler, Ambros Gleixner BibTeX
DOI
Research Campus MODAL
Adaptive Cut Selection in Mixed-Integer Linear Programming Open Journal of Mathematical Optimization, Vol.4, p. 5, 2023 (preprint available as ZIB-Report 22-04) Mark Turner, Thorsten Koch, Felipe Serrano, Michael Winkler PDF (ZIB-Report)
BibTeX
DOI
Research Campus MODAL
An Exceptionally Difficult Binary Quadratic Optimization Problem with Symmetry: a Challenge for The Largest Unsolved QAP Instance Tai256c ZIB-Report 23-27 Koichi Fujii, Sunyoung Kim, Masakazu Kojima, Hans D. Mittelmann, Yuji Shinano PDF
BibTeX
URN
Research Campus MODAL
An Interpretable Deep Learning Approach for Biomarker Detection in LC-MS Proteomics Data IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20(1), pp. 151-161, 2023 Sahar Iravani, Tim Conrad BibTeX
DOI
Research Campus MODAL
An effective approach for deriving and evaluating approximate optimal design solutions of energy supply systems by time series aggregation Frontiers in Energy Research, Vol.11, pp. 1-14, 2023 Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
DOI
Research Campus MODAL
Applying a Riesz-projection-based contour integral eigenvalue solver to compute resonance modes of a VCSEL Proc. SPIE, p. 125750J, Vol.12575, 2023 Lilli Kuen, Fridtjof Betz, Felix Binkowski, Philipp-Immanuel Schneider, Martin Hammerschmidt, Niels Heermeier, Sven Rodt, Stephan Reitzenstein, Sven Burger BibTeX
DOI
arXiv
Research Campus MODAL
Article’s scientific prestige: Measuring the impact of individual articles in the web of science Journal of Informetrics, 17(1), p. 101379, 2023 (preprint available as ZIB-Report 22-07) Ying Chen, Thorsten Koch, Nazgul Zakiyeva, Kailiang Liu, Zhitong Xu, Chun-houh Chen, Junji Nakano, Keisuke Honda PDF (ZIB-Report)
BibTeX
DOI
Research Campus MODAL
Assignment Based Resource Constrained Path Generation for Railway Rolling Stock Optimization 23rd Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2023), pp. 13:1-13:15, Vol.115, Open Access Series in Informatics (OASIcs), 2023 Boris Grimm, Ralf Borndörfer, Julian Bushe PDF
BibTeX
DOI
Research Campus MODAL
Beimischung von Wasserstoff zum Erdgas: Eine Kapazitätsstudie des deutschen Gasnetzes gwf Gas + Energie, 2023 Jaap Pedersen, Klaus Spreckelsen, Uwe Gotzes, Janina Zittel, Thorsten Koch BibTeX
Research Campus MODAL
Beimischung von Wasserstoff zum Erdgas: Eine Kapazitätsstudie des deutschen Gasnetzes 3R – Fachzeitschrift für Rohrleitungssystem, pp. 70-75, 2023 Jaap Pedersen, Klaus Spreckelsen, Uwe Gotzes, Janina Zittel, Thorsten Koch BibTeX
Research Campus MODAL
Branching via Cutting Plane Selection: Improving Hybrid Branching 2023 (under review, preprint available as ZIB-Report 23-17) Mark Turner, Timo Berthold, Mathieu Besançon, Thorsten Koch PDF (ZIB-Report)
BibTeX
Research Campus MODAL
Bravo MaRDI: A Wikibase Knowledge Graph on Mathematics Proceedings of the 4th Wikidata Workshop 2022 co-located with the 22st International Semantic Web Conference (ISWC2023), 2023 (accepted for publication) Moritz Schubotz, Eloi Ferrer, Johannes Stegmüller, Daniel Mietchen, Olaf Teschke, Larissa Pusch, Tim Conrad BibTeX
Research Campus MODAL
Combining Precision Boosting with LP Iterative Refinement for Exact Linear Optimization 2023 (under review, preprint available as ZIB-Report 23-26) Leon Eifler, Jules Nicolas-Thouvenin, Ambros Gleixner PDF (ZIB-Report)
BibTeX
Research Campus MODAL
Computational Approaches for Peroxisomal Protein Localization Peroxisomes, Humana, New York, pp. 405-411, 2023, ISBN: 978-1-0716-3047-1 Marco Anteghini, Vitor Martins Dos Santos BibTeX
DOI
Research Campus MODAL
Computational Methods for Protein Inference in Shotgun Proteomics Experiments Doctoral thesis, Eberhard Karls Universität Tübingen, Oliver Kohlbacher, Knut Reinert (Advisors), 2023 Julianus Pfeuffer BibTeX
Research Campus MODAL
Consistent flow scenario generation based on open data for operational analysis of European gas transport networks Operations Research Proceedings 2023, 2023 (accepted for publication) Inci Yueksel-Erguen, Thorsten Koch, Janina Zittel BibTeX
Research Campus MODAL
Cover Picture: Resonance Expansion of Quadratic Quantities with Regularized Quasinormal Modes Phys. Status Solidi A, Vol.220, p. 2370013, 2023 Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
DOI
Research Campus MODAL
Cutting Plane Selection with Analytic Centers and Multiregression Integration of Constraint Programming, Artificial Intelligence, and Operations Research. CPAIOR 2023., pp. 52-68, Vol.13884, Lecture Notes in Computer Science, 2023 (preprint available as ZIB-Report 22-28) Mark Turner, Timo Berthold, Mathieu Besançon, Thorsten Koch PDF (ZIB-Report)
BibTeX
DOI
Research Campus MODAL
Development and analysis of massive parallelization of a lattice basis reduction algorithm Japan Journal of Industrial and Applied Mathematics, 40(1), pp. 13-56, 2023 Nariaki Tateiwa, Yuji Shinano, Masaya Yasuda, Shizuo Kaji, Keiichiro Yamamura, Katsuki Fujisawa BibTeX
DOI
Research Campus MODAL
Effect of inertia force on the interface stability of a tangential-velocity discontinuity in porous media International Journal of Multiphase Flow, Vol.169, 2023 Thi Thai Le, Thorsten Koch BibTeX
DOI
Research Campus MODAL
Efficient Separation of RLT Cuts for Implicit and Explicit Bilinear Products Integer Programming and Combinatorial Optimization. IPCO 2023., pp. 14-28, Vol.13904, Lecture Notes in Computer Science, 2023 Ksenia Bestuzheva, Ambros Gleixner, Tobias Achterberg BibTeX
DOI
Research Campus MODAL
Enabling research through the SCIP optimization suite 8.0 ACM Transactions on Mathematical Software, 49(2), pp. 1-21, 2023 Ksenia Bestuzheva, Mathieu Besançon, Wei-Kun Chen, Antonia Chmiela, Tim Donkiewicz, Jasper Doornmalen, Leon Eifler, Oliver Gaul, Gerald Gamrath, Ambros Gleixner, Leona Gottwald, Christoph Graczyk, Katrin Halbig, Alexander Hoen, Christopher Hojny, Rolf Hulst, Thorsten Koch, Marco Lübbecke, Stephen J. Maher, Frederic Matter, Erik Mühmer, Benjamin Müller, Marc Pfetsch, Daniel Rehfeldt, Steffan Schlein, Franziska Schlösser, Felipe Serrano, Yuji Shinano, Boro Sofranac, Mark Turner, Stefan Vigerske, Fabian Wegscheider, Philipp Wellner, Dieter Weninger, Jakob Witzig BibTeX
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Research Campus MODAL
Enhancing ECG Analysis of Implantable Cardiac Monitor Data: An Efficient Pipeline for Multi-Label Classification Machine Learning and Knowledge Extraction, 5(4), 2023 Amnon Bleich, Antje Linnemann, Benjamin Jaidi, Bjoern H Diem, Tim Conrad BibTeX
DOI
Research Campus MODAL
Explicit modeling of antibody levels for infectious disease simulations in the context of SARS-CoV-2 iScience, 26(9), 2023 Sebastian Müller, Sydney Paltra, Jakob Rehmann, Kai Nagel, Tim Conrad BibTeX
DOI
Research Campus MODAL
Faster exact solution of sparse MaxCut and QUBO problems Mathematical Programming Computation, Vol.15, pp. 445-470, 2023 (preprint available as ZIB-Report 22-02) Daniel Rehfeldt, Thorsten Koch, Yuji Shinano PDF (ZIB-Report)
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DOI
Research Campus MODAL
Flexible Differentiable Optimization via Model Transformations INFORMS Journal on Computing, 2023 Mathieu Besançon, Joaquim Dias Garcia, Benoît Legat, Akshay Sharma BibTeX
DOI
Research Campus MODAL
Forecasting and modeling the dynamics of large-scale energy networks under the supply and demand balance constraint AIRO Springer Series: International Conference on Optimization and Decision Science, 2023 (accepted for publication) Milena Petkovic, Janina Zittel BibTeX
Research Campus MODAL
Forward and Line-Based Cycle Bases for Periodic Timetabling Operations Research Forum, 4(3), p. 53, 2023 (preprint available as ZIB-Report 23-05) Berenike Masing, Niels Lindner, Patricia Ebert PDF (ZIB-Report)
BibTeX
DOI
Research Campus MODAL
Global Optimization of Mixed-Integer Nonlinear Programs with SCIP 8.0 Journal of Global Optimization, 2023 (epub ahead of print, preprint available as ZIB-Report 23-01) Ksenia Bestuzheva, Antonia Chmiela, Benjamin Müller, Felipe Serrano, Stefan Vigerske, Fabian Wegscheider PDF (ZIB-Report)
BibTeX
DOI
Research Campus MODAL
High-dimensional high-frequency time series prediction with a mixed integer optimisation method Operations Research Proceedings, 2023 (accepted for publication, preprint available as ZIB-Report 23-30) Nazgul Zakiyeva, Milena Petkovic PDF (ZIB-Report)
BibTeX
URN
Research Campus MODAL
High-performance designs for fiber-pigtailed quantum-light sources based on quantum dots in electrically-controlled circular Bragg gratings Opt. Express, Vol.31, p. 14750, 2023 Lucas Rickert, Fridtjof Betz, Matthias Plock, Sven Burger, Tobias Heindel BibTeX
DOI
arXiv
Research Campus MODAL
Hybrid genetic search for dynamic vehicle routing with time windows Proceedings of Conference of the Society for Operations Research in Germany, 2023 Mohammed Ghannam, Ambros Gleixner BibTeX
Research Campus MODAL
Impact Study of Numerical Discretization Accuracy on Parameter Reconstructions and Model Parameter Distributions Metrologia, Vol.60, p. 054001, 2023 Matthias Plock, Martin Hammerschmidt, Sven Burger, Philipp-Immanuel Schneider, Christof Schütte BibTeX
DOI
arXiv
Research Campus MODAL
Implications, Conflicts, and Reductions for Steiner Trees Mathematical Programming, Vol.197, pp. 903-966, 2023 Daniel Rehfeldt, Thorsten Koch BibTeX
DOI
Research Campus MODAL
Improving Conflict Analysis in MIP Solvers by Pseudo-Boolean Reasoning 29th International Conference on Principles and Practice of Constraint Programming (CP 2023), pp. 27:1-27:19, Vol.280, Leibniz International Proceedings in Informatics (LIPIcs), 2023 Gioni Mexi, Timo Berthold, Ambros Gleixner, Jakob Nordström BibTeX
DOI
Research Campus MODAL
Improving the Realism of Synthetic Cryogenic Electron Micrographs Using Generative Adversarial Networks Master's thesis, Freie Universität Berlin, Daniel Baum (Advisor), 2023 Clea Peter BibTeX
Research Campus MODAL
Incremental Heuristics for Periodic Timetabling ZIB-Report 23-22 (accepted for publication) Niels Lindner, Christian Liebchen PDF
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URN
Research Campus MODAL
Integrating Line Planning for Construction Sites into Periodic Timetabling via Track Choice 23rd Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2023), pp. 5:1-5:15, Vol.115, Open Access Series in Informatics (OASIcs), 2023 Berenike Masing, Niels Lindner, Christian Liebchen BibTeX
DOI
Research Campus MODAL
Introducing TimPassLib – A Library for Integrated Periodic Timetabling and Passenger Routing Operations Research Forum, 4(3), p. 64, 2023 (preprint available as ZIB-Report 23-06) Philine Schiewe, Marc Goerigk, Niels Lindner PDF (ZIB-Report)
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Research Campus MODAL
K-Shortest Simple Paths Using Biobjective Path Search Arxiv Preprint, 2023 (under review) Pedro Maristany de las Casas, Antonio Sedeño-Noda, Ralf Borndörfer, Max Huneshagen BibTeX
DOI
arXiv
Research Campus MODAL
LFQ-Based Peptide and Protein Intensity Differential Expression Analysis J. Proteome Res., 22(6), pp. 2114-2123, 2023 Mingze Bai, Jingwen Deng, Chengxin Dai, Julianus Pfeuffer, Timo Sachsenberg, Yasset Perez-Riverol BibTeX
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Research Campus MODAL
Linear Programming in MILP Solving - A Computational Perspective Doctoral thesis, Technische Universität Berlin, Thorsten Koch, Julian Hall (Advisors), 2023, ISBN: 9783843953238 Matthias Miltenberger PDF
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URN
Research Campus MODAL
Modeling and solving real-world transient gas network transport problems using mathematical programming Doctoral thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2023 Felix Hennings BibTeX
Research Campus MODAL
Modeling the transition of the multimodal pan-European energy system including an integrated analysis of electricity and gas transport Energy Systems, 2023 (epub ahead of print, preprint available as ) Inci Yueksel-Erguen, Dieter Most, Lothar Wyrwoll, Carlo Schmitt, Janina Zittel BibTeX
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Research Campus MODAL
Monoidal strengthening and unique lifting in MIQCPs Integer Programming and Combinatorial Optimization. IPCO 2023., pp. 87-99, Vol.13904, Lecture Notes in Computer Science, 2023 (preprint available as ) Antonia Chmiela, Gonzalo Muñoz, Felipe Serrano BibTeX
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Research Campus MODAL
New Dynamic Programming Algorithm for the Multiobjective Minimum Spanning Tree Problem Arxiv Preprint, 2023 (under review) Pedro Maristany de las Casas, Antonio Sedeño-Noda, Ralf Borndörfer BibTeX
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arXiv
Research Campus MODAL
Novel multi-objective affinity approach allows to identify pH-specific μ-opioid receptor agonists Journal of Cheminformatics, Vol.15, 2023 Christopher Secker, Konstantin Fackeldey, Marcus Weber, Sourav Ray, Christoph Gorgulla, Christof Schütte BibTeX
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Research Campus MODAL
On the Numerical Treatment of Interlaced Target Values - Modeling, Optimization and Simulation of Regulating Valves in Gas Networks Optimization and Engineering, 2023 (preprint available as ZIB-Report 21-32) Felix Hennings, Milena Petkovic, Tom Streubel PDF (ZIB-Report)
PDF (ZIB-Report)
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DOI
Research Campus MODAL
On the Split Closure of the Periodic Timetabling Polytope ZIB-Report 23-16 Niels Lindner, Berenike Masing PDF
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On the implementation and strengthening of intersection cuts for QCQPs Mathematical Programming B, Vol.197, pp. 549-586, 2023 Antonia Chmiela, Gonzalo Muñoz, Felipe Serrano BibTeX
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On the state of QUBO solving Operations Research Proceedings 2023, 2023 (accepted for publication) Thorsten Koch, Daniel Rehfeldt, Yuji Shinano BibTeX
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PaPILO: A Parallel Presolving Library for Integer and Linear Programming with Multiprecision Support INFORMS Journal on Computing, 35(6), pp. 1329-1341, 2023 (epub ahead of print) Ambros Gleixner, Leona Gottwald, Alexander Hoen BibTeX
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Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: PERSONA IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20(3), pp. 2064-2077, 2023 Erhun Giray Tuncay, Rıza Cenk Erdur, Tim Conrad BibTeX
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Periodic Timetabling with Cyclic Order Constraints 23rd Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2023), pp. 7:1-7:18, Vol.115, Open Access Series in Informatics (OASIcs), 2023 Enrico Bortoletto, Niels Lindner, Berenike Masing BibTeX
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PortPred: Exploiting deep learning embeddings of amino acid sequences for the identification of transporter proteins and their substrates Journal of Cellular Biochemistry, 124(11), pp. 1665-1885, 2023 (epub ahead of print) Marco Anteghini, Vitor AP Martins dos Santos, Edoardo Saccenti BibTeX
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Predicting Coma Recovery After Cardiac Arrest With Residual Neural Networks Computing in Cardiology (CinC) 2023, Vol.50, 2023 Kuba Weimann, Tim Conrad BibTeX
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Predicting Fluid Interface Instability in Energy Systems for Sustainable Energy Transition Operations Research Proceedings, 2023 (accepted for publication) Thi Thai Le, Milena Petkovic BibTeX
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Probabilistic Image Segmentation With Continuous Shape Representations Master's thesis, Freie Universität Berlin, Tamaz Amiranashvili (Advisor), 2023 Ege Şirin BibTeX
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PySCIPOpt-ML: Embedding Trained Machine Learning Models into Mixed-Integer Programs Lecture Notes in Computer Science, 2023 (under review, preprint available as ZIB-Report 23-28) Mark Turner, Antonia Chmiela, Thorsten Koch, Michael Winkler PDF (ZIB-Report)
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RPExpand (Version 1) Zenodo, p. doi: 10.5281/zenodo.7840116, 2023 Fridtjof Betz, Felix Binkowski, Sven Burger BibTeX
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RPExpand (Version 2.0) Zenodo, p. doi: 10.5281/zenodo.10371002, 2023 Fridtjof Betz, Felix Binkowski, Sven Burger, Lilli Kuen BibTeX
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Resilient Forecasting of High-Dimensional Network Time Series in the Energy Domain: A Hybrid Approach Operations Research Proceedings 2023, 2023 (accepted for publication) Milena Petkovic, Janina Zittel BibTeX
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Resonance expansion of quadratic quantities with regularized quasinormal modes Phys. Status Solidi A, Vol.220, p. 2200892, 2023 Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
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arXiv
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Safe and Verified Gomory Mixed Integer Cuts in a Rational MIP Framework SIAM Journal on Optimization, 2023 (under review, preprint available as ZIB-Report 23-09) Leon Eifler, Ambros Gleixner PDF (ZIB-Report)
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Scaling and Rounding Periodic Event Scheduling Instances to Different Period Times ZIB-Report 23-23 (accepted for publication) Enrico Bortoletto, Niels Lindner PDF
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Scylla: a matrix-free fix-propagate-and-project heuristic for mixed-integer optimization Proceedings of Conference of the Society for Operations Research in Germany, 2023 Gioni Mexi, Mathieu Besançon, Suresh Bolusani, Antonia Chmiela, Alexander Hoen, Ambros Gleixner BibTeX
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Segmentation of tooth enamel microstructure images using classical image processing and U-Net approaches Frontiers in Imaging, Vol.2, 2023 Giovani Bressan Fogalli, Sérgio Roberto Peres Line, Daniel Baum BibTeX
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Source code and simulation results: Poles and zeros of electromagnetic quantities in photonic systems Zenodo, p. 8063931, 2023 Felix Binkowski, Fridtjof Betz, Remi Colom, Patrice Genevet, Sven Burger BibTeX
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Strengthening SONC Relaxations with Constraints Derived from Variable Bounds Ksenia Bestuzheva, Helena Völker, Ambros Gleixner PDF
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UmetaFlow: An untargeted metabolomics workflow for high-throughput data processing and analysis Journal of Cheminformatics, Vol.15, 2023 Eftychia E. Kontou, Axel Walter, Oliver Alka, Julianus Pfeuffer, Timo Sachsenberg, Omkar Mohite, Matin Nuhamunanda, Oliver Kohlbacher, Tilmann Weber BibTeX
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Understanding microbiome dynamics via interpretable graph representation learning Scientific Reports, Vol.13, p. 2058, 2023 Kateryna Melnyk, Kuba Weimann, Tim Conrad BibTeX
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Unsupervised Shape Correspondence Estimation for Anatomical Shapes Master's thesis, Technische Universität Berlin, Stefan Zachow, Tamaz Amiranashvili (Advisors), 2023 Lisa Bautz PDF
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Using Multiple Reference Vectors and Objective Scaling in the Feasibility Pump EURO Journal on Computational Optimization, Vol.11, 2023 (preprint available as ZIB-Report 22-14) Timo Berthold, Gioni Mexi, Domenico Salvagnin PDF (ZIB-Report)
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2022
22nd Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2022) Vol.106, Mattia D'Emidio, Niels Lindner (Eds.), Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, 2022, ISBN: 978-3-95977-259-4 BibTeX
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A Plug&Play Telecom-Wavelength Single-Photon Source for Quantum Key Distribution Quantum 2.0, p. QTu4C.6, Technical Digest Series (Optica), 2022 Lucas Rickert, Timm Gao, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Tobias Heindel BibTeX
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A Safe Computational Framework for Integer Programming applied to Chvátal's Conjecture ACM Transactions on Mathematical Software, 48(2), 2022 (preprint available as ZIB-Report 21-35) Leon Eifler, Ambros Gleixner, Jonad Pulaj PDF (ZIB-Report)
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A computational status update for exact rational mixed integer programming Mathematical Programming, 2022 Leon Eifler, Ambros Gleixner BibTeX
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A hybrid approach for high precision prediction of gas flows Energy Systems, Vol.13, pp. 383-408, 2022 (preprint available as ZIB-Report 19-26) Milena Petkovic, Ying Chen, Inken Gamrath, Uwe Gotzes, Natalia Selini Hadjidimitrou, Janina Zittel, Xiaofei Xu, Thorsten Koch PDF (ZIB-Report)
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A massively parallel interior-point solver for LPs with generalized arrowhead structure, and applications to energy system models European Journal of Operational Research, 296(1), pp. 60-71, 2022 (preprint available as ZIB-Report 19-41) Daniel Rehfeldt, Hannes Hobbie, David Schönheit, Thorsten Koch, Dominik Möst, Ambros Gleixner PDF (ZIB-Report)
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A quantum key distribution testbed using a plug&play telecom-wavelength single-photon source Appl. Phys. Rev., Vol.9, p. 011412, 2022 Timm Gao, Lucas Rickert, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Tobias Heindel BibTeX
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arXiv
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Accelerating domain propagation: An efficient GPU-parallel algorithm over sparse matrices Parallel Computing, Vol.109, p. 102874, 2022 Boro Šofranac, Ambros Gleixner, Sebastian Pokutta BibTeX
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An A* Algorithm for Flight Planning Based on Idealized Vertical Profiles 22nd Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2022), pp. 1:1-1:15, Vol.106, 2022 Marco Blanco, Ralf Borndörfer, Pedro Maristany de las Casas BibTeX
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An Algorithm-independent Measure of Progress for Linear Constraint Propagation Constraints, Vol.27, pp. 432-455, 2022 Boro Šofranac, Ambros Gleixner, Sebastian Pokutta BibTeX
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An analysis of the parameterized complexity of periodic timetabling Journal of Scheduling, Vol.25, pp. 157-176, 2022 (preprint available as ZIB-Report 20-15) Niels Lindner, Julian Reisch PDF (ZIB-Report)
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Bayesian Target-Vector Optimization for Efficient Parameter Reconstruction Adv. Theory Simul., Vol.5, p. 2200112, 2022 Matthias Plock, Kas Andrle, Sven Burger, Philipp-Immanuel Schneider BibTeX
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arXiv
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Benders Decomposition for the Periodic Event Scheduling Problem Operations Research Proceedings 2021, pp. 289-294, 2022 (preprint available as ZIB-Report 21-29) Niels Lindner, Rolf van Lieshout PDF (ZIB-Report)
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Blending hydrogen into natural gas: An assessment of the capacity of the German gas grid Operations Research Proceedings 2021, pp. 182-187, 2022 (preprint available as ZIB-Report 21-21) Jaap Pedersen, Kai Hoppmann-Baum, Janina Zittel, Thorsten Koch PDF (ZIB-Report)
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Boosting quantum optics experiments with Bayesian optimization Proc. SPIE, p. 122270F, Vol.12227, 2022 Philipp-Immanuel Schneider, Lin Zschiedrich, Martin Hammerschmidt, Lilli Kuen, Ivan Sekuliĉ, Julien Kluge, Bastian Leykauf, Markus Krutzik, Sven Burger BibTeX
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Chiral Bioinspired Plasmonics: A Paradigm Shift for Optical Activity and Photochemistry ACS Photon., Vol.9, p. 2219, 2022 Oscar Avalos-Ovando, Eva Yazmin Santiago, Artur Movsesyan, Xiang-Tian Kong, Peng Yu, Lucas V. Besteiro, Larousse Khosravi Khorashad, Hiromi Okamoto, Joseph M. Slocik, Miguel Correa-Duarte, Miguel Comesana-Hermo, Tim Liedl, Gil Markovich, Sven Burger, Alexander O. Govorov BibTeX
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Computation of eigenfrequency sensitivities using Riesz projections for efficient optimization of nanophotonic resonators Commun. Phys., Vol.5, p. 202, 2022 Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger BibTeX
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arXiv
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Computing single-source shortest paths on graphs with over 8 trillion edges ZIB-Report 22-22 Daniel Rehfeldt, Katsuki Fujisawa, Thorsten Koch, Masahiro Nakao, Yuji Shinano PDF
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Construction of Mathematical Basis for Realizing Data Rating Service Vol.90, Katsuki Fujisawa, Shizuo Kaji, Toru Ishihara, Masaaki Kondo, Yuji Shinano, Takuji Tanigawa, Naoko Nakayama (Eds.), Institute of Mathematics for Industry, Kyushu University: Graduate School of Mathematics, Kyushu University Motooka 744, Nishi-ku, Fukuoka, 819-0395, JAPAN, 2022 BibTeX
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Data publication for "High-performance designs for fiber-pigtailed quantum-light sources based on quantum dots in electrically-controlled circular Bragg gratings" Zenodo, p. 7360516, 2022 Lucas Rickert, Fridtjof Betz, Matthias Plock, Sven Burger, Tobias Heindel BibTeX
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Day and time aggregations for optimal design of energy supply systems with storage units by a hierarchical MILP method PROCEEDINGS OF ECOS 2022 - THE 35 TH INTERNATIONAL CONFERENCE ON EFFICIENCY, COST, OPTIMIZATION, SIMULATION AND ENVIRONMENTAL IMPACT OF ENERGY SYSTEMS, pp. 1891-1902, 2022 (in press) Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
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Day and time aggregations for optimal design of energy supply systems with storage units by a hierarchical MILP method The 35th International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems (ECOS 2022), pp. 1891-1902, 2022 Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
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Dictionary learning allows model-free pseudotime estimation of transcriptomics data BMC Genomics, Vol.23, 2022 Mona Rams, Tim Conrad BibTeX
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Does Laziness Pay Off? - A Lazy-Constraint Approach to Timetabling 22nd Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2022), pp. 11:1-11:8, Vol.106, Open Access Series in Informatics (OASIcs), 2022 Torsten Klug, Markus Reuther, Thomas Schlechte BibTeX
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Effect of depth discontinuity on interfacial stability of tangential-velocity discontinuity in shallow-water flow Physics Letters A, Vol.436, p. 128073, 2022 Thi Thai Le, Yasuhide Fukumoto BibTeX
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Enhanced Purcell factor for nanoantennas supporting interfering resonances Phys. Rev. Research, Vol.4, p. 023189, 2022 Remi Colom, Felix Binkowski, Fridtjof Betz, Yuri Kivshar, Sven Burger BibTeX
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arXiv
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Evaluation of robustness in multiple performance criteria for designing energy supply systems based on a mixed-integer linear model Proceedings of the 35th International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems (ECOS 2022), pp. 1937-1948, 2022 (in press) Ryohei Yokoyama, Yuto Hiramatsu, Yuji Shinano, Tetsuya Wakui BibTeX
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Evaluation of robustness in multiple performance criteria for designing energy supply systems based on a mixed-integer linear model The 35th International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems (ECOS 2022), pp. 1937-1948, 2022 Ryohei Yokoyama, Yuto Hiramatsu, Yuji Shinano, Tetsuya Wakui BibTeX
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Faster Algorithms for Steiner Tree and related Problems: From Theory to Practice Operations Research Proceedings 2022, 2022 Daniel Rehfeldt BibTeX
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Faster Algorithms for Steiner Tree and related Problems: From Theory to Practice OR News: Das Magazin der GOR, 2022 Daniel Rehfeldt BibTeX
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FrankWolfe.jl: a high-performance and flexible toolbox for Frank-Wolfe algorithms and Conditional Gradients INFORMS Journal on Computing, 34(5), pp. 2383-2865, 2022 Besançon Mathieu, Alejandro Carderera, Sebastian Pokutta BibTeX
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Generative deep learning for decision making in gas networks Mathematical Methods of Operations Research, Vol.95, pp. 503-532, 2022 (preprint available as ZIB-Report 20-38) Lovis Anderson, Mark Turner, Thorsten Koch PDF (ZIB-Report)
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Interpretable Deep Learning Approaches for Biomarker Detection from High-Dimensional Biomedical Data Doctoral thesis, Freie Universität Berlin, Tim Conrad (Advisor), 2022 Sahar Iravani BibTeX
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Landmark-free Statistical Shape Modeling via Neural Flow Deformations Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, Vol.13432, Lecture Notes in Computer Science, 2022 David Lüdke, Tamaz Amiranashvili, Felix Ambellan, Ivan Ezhov, Bjoern Menze, Stefan Zachow BibTeX
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arXiv
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Learning Shape Reconstruction from Sparse Measurements with Neural Implicit Functions Medical Imaging with Deep Learning, 2022 Tamaz Amiranashvili, David Lüdke, Hongwei Li, Bjoern Menze, Stefan Zachow PDF
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Length-Constrained Cycle Partition with an Application to UAV Routing Optimization Methods and Software, 2022 (preprint available as ZIB-Report 20-30) Kai Hoppmann-Baum, Oleg Burdakov, Gioni Mexi, Carl Johan Casselgren, Thorsten Koch PDF (ZIB-Report)
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Linking digital surveillance and in-depth virology to study clinical patterns of viral respiratory infections in vulnerable patient populations iScience, 25(5), 2022 Patrick E Obermeier, Albert Heim, Barbara Biere, Elias Hage, Maren Alchikh, Tim Conrad, Brunhilde Schweiger, Barbara A Rath BibTeX
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Location, transshipment and routing: An adaptive transportation network integrating long-haul and local vehicle routing EURO Journal on Transportation and Logistics, Vol.11, 2022 (preprint available as ZIB-Report 21-12) Junko Hosada, Stephen Maher, Yuji Shinano, Jonas Christoffer Villumsen PDF (ZIB-Report)
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Mathematical Optimization for Analyzing and Forecasting Nonlinear Network Time Series Operations Research Proceedings 2022, 2022 (preprint available as ZIB-Report 22-19) Milena Petkovic, Nazgul Zakiyeva PDF (ZIB-Report)
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Mathematical programming for stable control and safe operation of gas transport networks Doctoral thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2022 Kai Hoppmann-Baum BibTeX
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Modeling and Forecasting Gas Network Flows with Multivariate Time Series and Mathematical Programming Approach Operations Research Proceedings 2021. OR 2021., pp. 200-205, Lecture Notes in Operations Research, 2022 (preprint available as ZIB-Report 21-23) Nazgul Zakiyeva, Milena Petkovic PDF (ZIB-Report)
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Neural flow-based deformations for statistical shape modelling Master's thesis, Johann Wolfgang Goethe-Universität Frankfurt, Tamaz Amiranashvili, Stefan Zachow (Advisors), 2022 David Lüdke BibTeX
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New approaches for unsupervised transcriptomic data analysis based on Dictionary learning Doctoral thesis, Freie Universität Berlin, Tim Conrad (Advisor), 2022 Mona Milena Rams BibTeX
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On generalized surrogate duality in mixed-integer nonlinear programming Mathematical Programming, 192(1), pp. 89-118, 2022 Benjamin Müller, Gonzalo Muñoz, Maxime Gasse, Ambros Gleixner, Andrea Lodi, Felipe Serrano BibTeX
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On the Sufficient Condition for Solving the Gap-Filling Problem Using Deep Convolutional Neural Networks IEEE Transactions on Neural Networks and Learning Systems, 33(11), pp. 6194-6205, 2022 Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara BibTeX
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Onset of Chirality in Plasmonic Meta-Molecules and Dielectric Coupling ACS Nano, Vol.16, p. 16143, 2022 Kevin Martens, Timon Funck, Eva Y. Santiago, Alexander O. Govorov, Sven Burger, Tim Liedl BibTeX
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arXiv
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Optimal Connected Subgraphs: Integer Programming Formulations and Polyhedra Networks, 80(3), pp. 314-332, 2022 Daniel Rehfeldt, Henriette Franz, Thorsten Koch BibTeX
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Optimal Line Planning in the Parametric City Operations Research Proceedings 2021. OR 2021., Norbert Trautmann, Mario Drägi (Eds.), pp. 39-44, Lecture Notes in Operations Research, 2022, ISBN: 978-3-031-08623-6 (preprint available as ) Berenike Masing BibTeX
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Optimal Line Plans in the Parametric City and the Impact of In-Motion Costs Operations Research Proceedings 2021, Norbert Trautmann, Mario Drägi (Eds.), pp. 295-301, Lecture Notes in Operations Research, 2022, ISBN: 978-3-031-08623-6 (preprint available as ) Berenike Masing, Niels Lindner, Ralf Borndörfer BibTeX
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Optimization of Capacity Expansion in Potential-driven Networks including Multiple Looping - A comparison of modelling approaches OR Spectrum, Vol.44, pp. 179-224, 2022 (preprint available as ZIB-Report 18-44) Ralf Lenz, Kai-Helge Becker PDF (ZIB-Report)
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Optimizing transient gas network control for challenging real-world instances using MIP-based heuristics ZIB-Report 22-08 Felix Hennings, Kai Hoppmann-Baum, Janina Zittel PDF
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Periodic Timetabling with Integrated Track Choice for Railway Construction Sites ZIB-Report 22-26 Berenike Masing, Niels Lindner, Christian Liebchen PDF
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Plasmonic nanocrystals with complex shapes for photocatalysis and growth: Contrasting anisotropic hot-electron generation with the photothermal effect Adv. Opt. Mater., Vol.10, p. 2102663, 2022 Artur Movsesyan, Eva Yazmin Santiago, Sven Burger, Miguel Correa-Duarte, Lucas V. Besteiro, Zhiming Wang, Alexander O. Govorov BibTeX
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arXiv
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Price Optimal Routing in Public Transportation 2022 Ricardo Euler, Niels Lindner, Ralf Borndörfer BibTeX
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arXiv
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Progress in mathematical programming solvers from 2001 to 2020 EURO Journal on Computational Optimization, Vol.10, p. 100031, 2022 (preprint available as ZIB-Report 21-20) Thorsten Koch, Timo Berthold, Jaap Pedersen, Charlie Vanaret PDF (ZIB-Report)
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Research data and example scripts for the paper "Bayesian Target-Vector Optimization for Efficient Parameter Reconstruction" Zenodo, 2022 Matthias Plock, Kas Andrle, Sven Burger, Philipp-Immanuel Schneider BibTeX
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Research Campus MODAL
Resonant Plasmonic–Biomolecular Chiral Interactions in the Far-Ultraviolet: Enantiomeric Discrimination of sub-10 nm Amino Acid Films Nano Lett., Vol.22, p. 7343, 2022 Tiago Ramos Leite, Lin Zschiedrich, Orhan Kizilkaya, Kevin M. McPeak BibTeX
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Robust Beamforming Based on Complex-Valued Convolutional Neural Networks for Sensor Arrays IEEE Signal Processing Letters, Vol.29, pp. 2018-2021, 2022 Saeed Mohammadzadeh, Vítor H. Nascimento, Rodrigo C. de Lamare, Noushin Hajarolasvadi BibTeX
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Simulation of Piecewise Smooth Differential Algebraic Equations with Application to Gas Networks Doctoral thesis, Humboldt-Universität zu Berlin, Caren Tischendorf, Andrea Walther (Advisors), 2022 Tom Streubel BibTeX
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Source code and simulation data for Computation of eigenfrequency sensitivities using Riesz projections for efficient optimization of nanophotonic resonators Zenodo, 2022 Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger BibTeX
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Source code and simulation results for computing resonance expansions of quadratic quantities with regularized quasinormal modes Zenodo, 2022 Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
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Source code and simulation results for nanoantennas supporting an enhanced Purcell factor due to interfering resonances Zenodo, 2022 Remi Colom, Felix Binkowski, Fridtjof Betz, Yuri Kivshar, Sven Burger BibTeX
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Statistical Analysis and Modeling for Detecting Regime Changes in Gas Nomination Time Series Operations Research Proceedings 2021. OR 2021, pp. 188-193, Lecture Notes in Operations Research, 2022 (preprint available as ZIB-Report 21-22) Milena Petkovic, Nazgul Zakiyeva, Janina Zittel PDF (ZIB-Report)
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Strengthening SONC Relaxations with Constraints Derived from Variable Bounds Proceedings of the Hungarian Global Optimization Workshop HUGO 2022, pp. 41-44, 2022 (preprint available as ZIB-Report 22-23) Ksenia Bestuzheva, Ambros Gleixner, Helena Völker PDF (ZIB-Report)
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arXiv
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The price of symmetric line plans in the Parametric City Transportation Research Part B: Methodological, Vol.166, pp. 419-443, 2022 (preprint available as ) Berenike Masing, Niels Lindner, Ralf Borndörfer BibTeX
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The tropical and zonotopal geometry of periodic timetables ZIB-Report 22-09 Enrico Bortoletto, Niels Lindner, Berenike Masing PDF
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arXiv
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Tight Convex Relaxations for the Expansion Planning Problem Journal of Optimization Theory and Applications, Vol.194, pp. 325-352, 2022 (preprint available as ZIB-Report 21-05) Ralf Lenz, Felipe Serrano PDF (ZIB-Report)
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Timetable Optimization for a Moving Block System Journal of Rail Transport Planning & Management, Vol.22, p. 100315, 2022 (preprint available as ZIB-Report 21-13) Thomas Schlechte, Ralf Borndörfer, Jonas Denißen, Simon Heller, Torsten Klug, Michael Küpper, Niels Lindner, Markus Reuther, Andreas Söhlke, William Steadman PDF (ZIB-Report)
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Toward maximally electromagnetically chiral scatterers at optical frequencies ACS Photonics, Vol.9, p. 1954, 2022 Xavier Garcia Santiago, Martin Hammerschmidt, Johannes Sachs, Sven Burger, Hyunah Kwon, Marvin Knöller, Tilo Arens, Peer Fischer, Ivan Fernandez-Corbaton, Carsten Rockstuhl BibTeX
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arXiv
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Tropical Neighbourhood Search: A New Heuristic for Periodic Timetabling 22nd Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2022), pp. 3:1-3:19, Vol.106, Open Access Series in Informatics (OASIcs), 2022 (preprint available as ZIB-Report 22-13) Enrico Bortoletto, Niels Lindner, Berenike Masing PDF (ZIB-Report)
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Viscosity and porosity effects on tangential-discontinuity surface stability in 3D Compressible Media Physics of Fluids, 34(7), 2022 Thi Thai Le, Thorsten Koch BibTeX
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Volumetric macromolecule identification in cryo-electron tomograms using capsule networks BMC Bioinformatics, 23(360), 2022 Noushin Hajarolasvadi, Vikram Sunkara, Sagar Khavnekar, Florian Beck, Robert Brandt, Daniel Baum BibTeX
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データ格付けサービス実現のための数理基盤の構築 Vol.91, Katsuki Fujisawa, Shizuo Kaji, Toru Ishihara, Masaaki Kondo, Yuji Shinano, Takuji Tanigawa, Naoko Nakayama (Eds.), Institute of Mathematics for Industry, Kyushu University: Graduate School of Mathematics, Kyushu University Motooka 744, Nishi-ku, Fukuoka, 819-0395, JAPAN, 2022 BibTeX
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時間集約によるエネルギー供給システムの 近似最適設計解の導出および評価 (階層的最適化を援用した設計解の評価) エネルギー・資源学会第38回エネルギーシステム・経済・環境コンファレンス講演論文集, pp. 468-473, 2022 (in press) Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
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時間集約によるエネルギー供給システムの 近似最適設計解の導出および評価 (階層的最適化を援用した近似最適設計) 第41回エネルギー・資源学会研究発表会講演論文集, pp. 144-148, 2022 (in press) Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
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2021
A Computational Status Update for Exact Rational Mixed Integer Programming Integer Programming and Combinatorial Optimization: 22th International Conference, IPCO 2021, 2021 (preprint available as ZIB-Report 21-04) Leon Eifler, Ambros Gleixner PDF (ZIB-Report)
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A Convergent Discretisation Method for Transition Path Theory for Diffusion Processes Multiscale Modeling & Simulation, 19(1), pp. 242-266, 2021 Nada Cvetkovic, Tim Conrad, Han Cheng Lie BibTeX
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A Decomposition and Dualization Approach to the Periodic Event Scheduling Problem Bachelor's thesis, Technische Universität Berlin, Ralf Borndörfer, Thorsten Koch, Niels Lindner (Advisors), 2021 Johanna Lange BibTeX
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A Deep Learning Method for Automated Detection of Meniscal Tears in Meniscal Sub-Regions in 3D MRI Data Master's thesis, Freie Universität Berlin, Tack Alexander, Zachow Stefan (Advisors), 2021 Alexey Shestakov BibTeX
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A Label Setting Multiobjective Shortest Path FPTAS Bachelor's thesis, Freie Universität Berlin, Ralf Borndörfer, Niels Lindner, Pedro Maristany de las Casas (Advisors), 2021 Luitgard Kraus BibTeX
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A Quantum Key Distribution Testbed Using Plug&Play Telecom-Wavelength Single-Photons Quantum Information and Measurement VI, p. M2C.1, OSA Technical Digest, 2021 Lucas Rickert, Timm Gao, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Heindel Tobias BibTeX
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A hierarchical optimization approach to robust design of energy supply systems based on a mixed-integer linear model Energy, Vol.229, 2021 (epub ahead of print) Ryohei Yokoyama, Hiroki Kamada, Yuji Shinano, Tetsuya Wakui BibTeX
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A proteomics sample metadata representation for multiomics integration and big data analysis Nature Communications, 12(5854), 2021 Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M. Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexovy, Björn Grüning, Melanie Christine Föll, Johannes Griss, Marc Vaudel, Enrique Audain, Marie Locard-Paulet, Michael Turewicz, Martin Eisenacher, Julian Uszkoreit, Tim Van Den Bossche, Veit Schwämmle, Henry Webel, Stefan Schulze, David Bouyssié, Savita Jayaram, Vinay Kumar Duggineni, Patroklos Samaras, Mathias Wilhelm, Meena Choi, Mingxun Wang, Oliver Kohlbacher, Alvis Brazma, Irene Papatheodorou, Nuno Bandeira, Eric W. Deutsch, Juan Antonio Vizcaíno, Mingze Bai, Timo Sachsenberg, Lev I. Levitsky, Yasset Perez-Riverol BibTeX
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Advances in Bayesian optimization for photonics and quantum atom optics applications OSA Advanced Photonics Congress, p. JTh1E.2, OSA Technical Digest, 2021 Philipp-Immanuel Schneider, Xavier Garcia-Santiago, Benjamin Wiegand, Oliver Anton, Markus Krutzik, Carsten Rockstuhl, Sven Burger BibTeX
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An Algorithm-Independent Measure of Progress for Linear Constraint Propagation 27th International Conference on Principles and Practice of Constraint Programming (CP 2021), pp. 52:1-52:17, Vol.210, Leibniz International Proceedings in Informatics (LIPIcs), 2021 (epub ahead of print) Boro Sofranac, Ambros Gleixner, Sebastian Pokutta BibTeX
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An Improved Multiobjective Shortest Path Algorithm Computers & Operations Research, Vol.135, 2021 (preprint available as ZIB-Report 20-26) Pedro Maristany de las Casas, Antonio Sedeno-Noda, Ralf Borndörfer PDF (ZIB-Report)
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An Optimization Approach for the Transient Control of Hydrogen Transport Networks Mathematical Methods of Operations Research, 2021 (under review) Kai Hoppmann-Baum, Felix Hennings, Janina Zittel, Uwe Gotzes, Eva-Maria Spreckelsen, Klaus Spreckelsen, Thorsten Koch BibTeX
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AutoImplant 2020 - First MICCAI Challenge on Automatic Cranial Implant Design IEEE Transactions on Medical Imaging, 40(9), pp. 2329-2342, 2021 Jianning Li, Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Estacio, Christian Doenitz, Heiko Ramm, Haochen Shi, Xiaojun Chen, Franco Matzkin, Virginia Newcombe, Enzo Ferrante, Yuan Jin, David G. Ellis, Michele R. Aizenberg, Oldrich Kodym, Michal Spanel, Adam Herout, James G. Mainprize, Zachary Fishman, Michael R. Hardisty, Amirhossein Bayat, Suprosanna Shit, Bomin Wang, Zhi Liu, Matthias Eder, Antonio Pepe, Christina Gsaxner, Victor Alves, Ulrike Zefferer, Cord von Campe, Karin Pistracher, Ute Schäfer, Dieter Schmalstieg, Bjoern H. Menze, Ben Glocker, Jan Egger BibTeX
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Bayesian optimization with improved scalability and derivative information for efficient design of nanophotonic structures J. Light. Technol., Vol.39, p. 167, 2021 Xavier Garcia Santiago, Sven Burger, Carsten Rockstuhl, Philipp-Immanuel Schneider BibTeX
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arXiv
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CINDy: Conditional gradient-based Identification of Non-linear Dynamics – Noise-robust recovery Journal of Computational and Applied Mathematics, 2021 (under review) Alejandro Carderera, Sebastian Pokutta, Christof Schütte, Martin Weiser BibTeX
arXiv
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CMAP-LAP: Configurable Massively Parallel Solver for Lattice Problems HiPC 2021 proceedings, 2021 (preprint available as ZIB-Report 21-16) Nariaki Tateiwa, Yuji Shinano, Keiichiro Yamamura, Akihiro Yoshida, Shizuo Kaji, Masaya Yasuda, Katsuki Fujisawa PDF (ZIB-Report)
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Complexity of near-optimal robust versions of multilevel optimization problems Optimization Letters, 15(8), pp. 2597-2610, 2021 Mathieu Besançon, Miguel F. Anjos, Luce Brotcorne BibTeX
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Conflict Analysis for MINLP INFORMS Journal on Computing, 33(2), pp. 421-435, 2021 (preprint available as ZIB-Report 20-20) Jakob Witzig, Timo Berthold PDF (ZIB-Report)
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Controlling transient gas flow in real-world pipeline intersection areas Optimization and Engineering, Vol.22, pp. 687-734, 2021 (preprint available as ZIB-Report 19-24) Felix Hennings, Lovis Anderson, Kai Hoppmann-Baum, Mark Turner, Thorsten Koch PDF (ZIB-Report)
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Deep learning for spatio-temporal supply anddemand forecasting in natural gas transmission networks Energy Science and Engineering, 2021 (epub ahead of print, preprint available as ZIB-Report 21-01) Milena Petkovic, Thorsten Koch, Janina Zittel PDF (ZIB-Report)
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Deutsche Bahn Schedules Train Rotations Using Hypergraph Optimization Informs Journal on Applied Analytics, 51(1), pp. 42-62, 2021 Ralf Borndörfer, Thomas Eßer, Patrick Frankenberger, Andreas Huck, Christoph Jobmann, Boris Krostitz, Karsten Kuchenbecker, Kai Moorhagen, Philipp Nagl, Michael Peterson, Markus Reuther, Thilo Schang, Michael Schoch, Hanno Schülldorf, Peter Schütz, Tobias Therolf, Kerstin Waas, Steffen Weider BibTeX
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Distribution System Planning with Battery Storage using Multiperiod Optimal Power Flow 14th International Renewable Energy Storage Conference 2020 (IRES 2020), pp. 41-48, Vol.6, Atlantis Highlights in Engineering, 2021 Jaap Pedersen, Birgit Schachler, Anya Heider, Guido Pleßmann BibTeX
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Effect of model reduction by time aggregation in multiobjective optimal design of energy supply systems by a hierarchical MILP method Energy, Vol.228, 2021 (epub ahead of print) Ryohei Yokoyama, Kotaro Takeuchi, Yuji Shinano, Tetsuya Wakui BibTeX
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Effect of water depth on Kelvin - Helmholtz instability in a shallow-water flow Journal of Mathematical Physics, 62(10), 2021 Thi Thai Le BibTeX
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Efficient Online-Bandit Strategies for Minimax Learning Problems 2021 Christophe Roux, Sebastian Pokutta, Elias Wirth, Thomas Kerdreux BibTeX
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Estimating the Size of Branch-And-Bound Trees INFORMS Journal on Computing, 2021 (preprint available as ZIB-Report 20-02) Gregor Hendel, Daniel Anderson, Pierre Le Bodic, Marc Pfetsch PDF (ZIB-Report)
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Faster algorithms for Steiner tree and related problems: From theory to practice Doctoral thesis, Technische Universität Berlin, Thorsten Koch, Eduardo Uchoa, Renato Werneck (Advisors), 2021 Daniel Rehfeldt PDF
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Feature space approximation for kernel-based supervised learning Knowledge-Based Sytems, Vol.221, 2021 Patrick Gelss, Stefan Klus, Ingmar Schuster, Christof Schütte BibTeX
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Forward Cycle Bases and Periodic Timetabling 21st Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2021), pp. 2:1-2:14, Vol.96, Open Access Series in Informatics (OASIcs), 2021 (preprint available as ZIB-Report 21-18) Niels Lindner, Christian Liebchen, Berenike Masing PDF (ZIB-Report)
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Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides Bioinformatics, pp. 1470-1472, 2021 Husen M. Umer, Yafeng Zhu, Julianus Pfeuffer, Timo Sachsenberg, Janne Lehtiö, Rui Branca, Yasset Perez-Riverol BibTeX
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Implications, conflicts, and reductions for Steiner trees Integer Programming and Combinatorial Optimization: 22th International Conference, IPCO 2021, pp. 473-487, 2021 (preprint available as ZIB-Report 20-28) Daniel Rehfeldt, Thorsten Koch PDF (ZIB-Report)
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Improved models for operation modes of complex compressor stations Mathematical Methods of Operations Research, Vol.94, pp. 171-195, 2021 (preprint available as ZIB-Report 17-65) Benjamin Hiller, René Saitenmacher, Tom Walther PDF (ZIB-Report)
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Incremental design of water symbiosis networks with prior knowledge: The case of an industrial park in Kenya Science of the Total Environment, Vol.751, 2021 Elham Ramin, Ksenia Bestuzheva, Carina Gargalo, Danial Ramin, Carina Schneider, Pedram Ramin, Xavier Flores-Alsina, Maj M. Andersen, Krist V. Gernaey BibTeX
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Instability of a tangential discontinuity surface in a three-dimensional compressible medium Physics of Fluids, 33(1), p. 016106, 2021 Thi Thai Le, Thorsten Koch BibTeX
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Interface stability of compressible fluids in porous media Physics of Fluids, 33(8), p. 084102, 2021 Thi Thai Le, Thorsten Koch BibTeX
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Investigation of Options to Handle 3D MRI Data via Convolutional Neural Networks Application in Knee Osteoarthritits Classification Master's thesis, Otto-von-Guericke-Universität Magdeburg, Alexander Tack, Stefan Zachow (Advisors), 2021 Jan Krause BibTeX
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Large-scale empirical study on the momentum equation's inertia term Journal of Natural Gas Science and Engineering, Vol.95, 2021 (preprint available as ZIB-Report 21-08) Felix Hennings PDF (ZIB-Report)
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Learn to Relax: Integrating 0-1 Integer Linear Programming with Pseudo-Boolean Conflict-Driven Search Constraints, Vol.26, pp. 26-55, 2021 Jo Devriendt, Ambros Gleixner, Jakob Nordström BibTeX
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Learning to Schedule Heuristics in Branch and Bound Thirty-fifth Conference on Neural Information Processing Systems, NeurIPS 2021, 2021 Antonia Chmiela, Elias B. Khalil, Ambros Gleixner, Andrea Lodi, Sebastian Pokutta BibTeX
arXiv
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Learning to Use Local Cuts Master's thesis, Freie Universität Berlin, Timo Berthold, Ralf Borndörfer, Tim Conrad (Advisors), 2021 Matteo Francobaldi PDF
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Long- and Short-Ranged Chiral Interactions in DNA Assembled Plasmonic Chains Nat. Commun., Vol.12, p. 2025, 2021 Kevin Martens, Felix Binkowski, Linh Nguyen, Li Hu, Alexander O. Govorov, Sven Burger, Tim Liedl BibTeX
arXiv
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MIPLIB 2017: Data-Driven Compilation of the 6th Mixed-Integer Programming Library Mathematical Programming Computation, 13(3), pp. 443-490, 2021 Ambros Gleixner, Gregor Hendel, Gerald Gamrath, Tobias Achterberg, Michael Bastubbe, Timo Berthold, Philipp M. Christophel, Kati Jarck, Thorsten Koch, Jeff Linderoth, Marco Lübbecke, Hans Mittelmann, Derya Ozyurt, Ted Ralphs, Domenico Salvagnin, Yuji Shinano BibTeX
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Massively parallel sharing lattice basis reduction ZIB-Report 21-38 (under review) Nariaki Tateiwa, Yuji Shinano, Masaya Yasuda, Shizuo Kaji, Keiichiro Yamamura, Katsuki Fujisawa PDF
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Modeling functional time series and mixed-type predictors with partially functional autoregressions* Journal of Business and Economic Statistics, pp. 1-43, 2021 Xiaofei Xu, Ying Chen, Ge Zhang, Thorsten Koch BibTeX
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Modeling of surface-induced second-harmonic generation from multilayer structures by the transfer matrix method Opt. Express, Vol.29, p. 9098, 2021 Anton V. Pakhomov, Martin Hammerschmidt, Sven Burger, Thomas Pertsch, Frank Setzpfand BibTeX
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On the Complexity of Computing Maximum and Minimum Min‐Cost‐Flows Networks, 2021 (epub ahead of print, preprint available as ZIB-Report 19-19) Kai Hoppmann-Baum PDF (ZIB-Report)
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On the Regression Model for Generalized Normal Distributions Entropy, 23(2), p. 173, 2021 Ayman Alzaatreh, Mohammad Aljarrah, Ayanna Almagambetova, Nazgul Zakiyeva BibTeX
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On the exact solution of prize-collecting Steiner tree problems INFORMS Journal on Computing, 2021 (preprint available as ZIB-Report 20-11) Daniel Rehfeldt, Thorsten Koch PDF (ZIB-Report)
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On the implementation and strengthening of intersection cuts for QCQPs Integer Programming and Combinatorial Optimization: 22nd International Conference, IPCO 2021, pp. 134-147, Vol.22, 2021 (preprint available as ) Antonia Chmiela, Gonzalo Muñoz, Felipe Serrano PDF (ZIB-Report)
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Optimal Forks: Preprocessing Single-Source Shortest Path Instances with Interval Data 21st Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2021), pp. 7:1-7:15, Vol.96, Open Access Series in Informatics (OASIcs), 2021 (preprint available as ZIB-Report 21-17) Niels Lindner, Pedro Maristany de las Casas, Philine Schiewe PDF (ZIB-Report)
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Optimal Operation of Transient Gas Transport Networks Optimization and Engineering, Vol.22, pp. 735-781, 2021 (preprint available as ZIB-Report 19-23) Kai Hoppmann-Baum, Felix Hennings, Ralf Lenz, Uwe Gotzes, Nina Heinecke, Klaus Spreckelsen, Thorsten Koch PDF (ZIB-Report)
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Optimization of Stationary Expansion Planning and Transient Network Control by Mixed-Integer Nonlinear Programming Doctoral thesis, Technische Universität Berlin, 2021 Ralf Lenz BibTeX
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Optimized diamond inverted nanocones for enhanced color center to fiber coupling Appl. Phys. Lett., Vol.118, p. 234002, 2021 Cem Güney Torun, Philipp-Immanuel Schneider, Martin Hammerschmidt, Sven Burger, Joseph H.D. Munns, Tim Schröder BibTeX
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arXiv
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Optimizing metal grating back reflectors for III-V-on-silicon multijunction solar cells Opt. Express, Vol.29, p. 22517, 2021 Peter Tillmann, Benedikt Bläsi, Sven Burger, Martin Hammerschmidt, Oliver Höhn, Christiane Becker, Klaus Jäger BibTeX
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Orientation-invariant Dense Correspondence using Graph Convolutional Neural Networks Master's thesis, Universität Potsdam, Martin Grewe, Tamaz Amiranashvili, Zachow Stefan (Advisors), 2021 Dev Punjabi BibTeX
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Pipe Merging for Transient Gas Network Problems ZIB-Report 21-10 Ralf Lenz PDF
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Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts PLOS One, 16(4), 2021 Hanna Wulkow, Tim Conrad, Natasa Djurdjevac Conrad, Sebastian A. Müller, Kai Nagel, Christof Schütte BibTeX
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RPExpand: Software for Riesz projection expansion of resonance phenomena SoftwareX, Vol.15, p. 100763, 2021 Fridtjof Betz, Felix Binkowski, Sven Burger BibTeX
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RPExpand: Software for Riesz projection expansion of resonance phenomena [Source Code] 2021 Fridtjof Betz, Felix Binkowski, Sven Burger BibTeX
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Recent advances in Bayesian optimization with applications to parameter reconstruction in optical nano-metrology Proc. SPIE, Vol.11783, p. 117830J, 2021 Matthias Plock, Sven Burger, Philipp-Immanuel Schneider BibTeX
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arXiv
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Resource Constrained APSP-Algorithm with Possible Reloading Stops Master's thesis, Freie Universität Berlin, Ralf Borndörfer, Niels Lindner (Advisors), 2021 Niloofar Rahmati BibTeX
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Robust Approximation of Chance Constrained DC Optimal Power Flow under Decision-Dependent Uncertainty European Journal of Operational Research, 2021 Kevin-Martin Aigner, Jan-Patrick Clarner, Frauke Liers, Alexander Martin BibTeX
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Rolling Stock Rotation Optimization with Maintenance Paths Master's thesis, Technische Universität Berlin, Thorsten Koch, Ralf Borndörfer, Boris Grimm, Stanley Schade (Advisors), 2021 Julian Bushe BibTeX
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SAT-Heuristiken für das Periodic Event Scheduling-Problem OR News, 2021 Sarah Roth BibTeX
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SCIP-Jack: An exact high performance solver for Steiner tree problems in graphs and related problems Modeling, Simulation and Optimization of Complex Processes HPSC 2018, LNCS, 2021 Daniel Rehfeldt, Yuji Shinano, Thorsten Koch BibTeX
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Shortest Paths with Boolean Constraints Master's thesis, Freie Universität Berlin, Ralf Borndörfer, Niels Lindner, Marco Blanco (Advisors), 2021 Arno Kühner BibTeX
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The SCIP Optimization Suite 8.0 ZIB-Report 21-41 Ksenia Bestuzheva, Mathieu Besançon, Wei-Kun Chen, Antonia Chmiela, Tim Donkiewicz, Jasper van Doornmalen, Leon Eifler, Oliver Gaul, Gerald Gamrath, Ambros Gleixner, Leona Gottwald, Christoph Graczyk, Katrin Halbig, Alexander Hoen, Christopher Hojny, Rolf van der Hulst, Thorsten Koch, Marco Lübbecke, Stephen J. Maher, Frederic Matter, Erik Mühmer, Benjamin Müller, Marc E. Pfetsch, Daniel Rehfeldt, Steffan Schlein, Franziska Schlösser, Felipe Serrano, Yuji Shinano, Boro Sofranac, Mark Turner, Stefan Vigerske, Fabian Wegscheider, Philipp Wellner, Dieter Weninger, Jakob Witzig PDF
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The maximum diversity assortment selection problem Mathematical Methods of Operations Research, Vol.93, pp. 521-554, 2021 (preprint available as ZIB-Report 20-34) Felix Prause, Kai Hoppmann-Baum, Boris Defourny, Thorsten Koch PDF (ZIB-Report)
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The tropical tiling of periodic timetable space and a dual modulo network simplex algorithm Master's thesis, Freie Universität Berlin, Ralf Borndörfer, Niels Lindner (Advisors), 2021 Enrico Bortoletto BibTeX
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Towards novel osteoarthritis biomarkers: Multi-criteria evaluation of 46,996 segmented knee MRI data from the Osteoarthritis Initiative PLOS One, 16(10), 2021 Alexander Tack, Felix Ambellan, Stefan Zachow BibTeX
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Transfer Learning for ECG Classification Scientific Reports, Vol.11, 2021 K. Weimann, Tim Conrad BibTeX
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UG - Ubiquity Generator Framework v1.0.0beta 2021 Yuji Shinano BibTeX
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Unsupervised Detection of Disturbances in 2D Radiographs 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), pp. 367-370, 2021 Laura Estacio, Moritz Ehlke, Alexander Tack, Eveling Castro-Gutierrez, Hans Lamecker, Rensso Mora, Stefan Zachow BibTeX
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VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images Medical Image Analysis, Vol.73, 2021 Anjany Sekuboyina, Malek E. Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukačka, Christian Payer, Darko Štern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubicek, Jiri Chmelik, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke BibTeX
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eIF5A hypusination, boosted by dietary spermidine, protects from premature brain aging and mitochondrial dysfunction Cell Reports, 35(2), 2021 YongTian Liang, Chengji Piao, Christine B. Beuschel, David Toppe, Laxmikanth Kollipara, Boris Bogdanow, Marta Maglione, Janine Lützkendorf, Jason Chun Kit See, Sheng Huang, Tim Conrad, Ulrich Kintscher, Frank Madeo, Fan Liu, Albert Sickmann, Stephan J. Sigrist BibTeX
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2020
A Hierarchical Optimization Approach to Robust Design of Energy Supply Systems Based on a Mixed-Integer Linear Model Conference, pp. 601-613, International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems, 2020 (in press) Ryohei Yokoyama, Hiroki Kamada, Yuji Shinano, Tetsuya Wakui BibTeX
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A Physarum-Inspired Algorithm for Minimum-Cost Relay Node Placement in Wireless Sensor Networks IEEE/ACM Transactions on Networking, 2020 Yahui Sun, Daniel Rehfeldt, Marcus Brazil, Doreen Thomas, Saman Halgamuge BibTeX
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A light-weight and highly flexible software system for analyzing large bio-medical datasets Future Generation Computer Systems, 2020 (under review) Huy Le Duc, Tim Conrad BibTeX
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A review study of functional autoregressive models with application to energy forecasting WIREs Computational Statistics, 2020 Thorsten Koch, Ying Chen, Kian Guan Lim, Xiaofei Xu, Nazgul Zakiyeva BibTeX
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Accelerating Domain Propagation: an Efficient GPU-Parallel Algorithm over Sparse Matrices 2020 IEEE/ACM 10th Workshop on Irregular Applications: Architectures and Algorithms (IA3), pp. 1-11, 2020 Boro Sofranac, Ambros Gleixner, Sebastian Pokutta BibTeX
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Advances in Verification of ReLU Neural Networks Journal of Global Optimization, 2020 (preprint available as ZIB-Report 19-40) Ansgar Rössig, Milena Petkovic PDF (ZIB-Report)
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An FPTAS for Dynamic Multiobjective Shortest Path Problems ZIB-Report 20-31 (Appeared in Algorithms 2021, 14(2), 43) Pedro Maristany de las Casas, Ralf Borndörfer, Luitgard Kraus, Antonio Sedeño-Noda PDF
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An exploratory computational analysis of dual degeneracy in mixed-integer programming EURO Journal on Computational Optimization, pp. 241-246, 2020 Gerald Gamrath, Timo Berthold, Domenico Salvagnin BibTeX
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Automated Virtual Reconstruction of Large Skull Defects using Statistical Shape Models and Generative Adversarial Networks Towards the Automatization of Cranial Implant Design in Cranioplasty, Vol.12439, pp. 16-27, 2020 Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Estacio, Christian Doenitz, Heiko Ramm BibTeX
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Bounding the final rank during a round robin tournament with integer programming Operational Research, Vol.1866-1505, 2020 (preprint available as ZIB-Report 19-50) Uwe Gotzes, Kai Hoppmann-Baum PDF (ZIB-Report)
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Capacity Evaluation for Large-Scale Gas Networks German Success Stories in Industrial Mathematics, Vol.35, pp. 23-28, 2020, ISBN: 978-3-030-81454-0 Thorsten Koch, Martin Schmidt, Benjamin Hiller, Marc Pfetsch, Björn Geißler, René Henrion, Imke Joormann, Alexander Martin, Antonio Morsi, Werner Römisch, Lars Schewe, Rüdiger Schultz BibTeX
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Co-aligned chondrocytes: Zonal morphological variation and structured arrangement of cell lacunae in tessellated cartilage Bone, Vol.134, p. 115264, 2020 (preprint available as ) Júlia Chaumel, Merlind Schotte, Joseph J. Bizzarro, Paul Zaslansky, Peter Fratzl, Daniel Baum, Mason N. Dean BibTeX
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Combining Phage Display and Next-generation Sequencing for Materials Sciences: A Case Study on Probing Polypropylene Surfaces Journal of the American Chemical Society, 142(24), pp. 10624-10628, 2020 Carmen Juds, Johannes Schmidt, Michael Weller, Thorid Lange, Tim Conrad, Hans Boerner BibTeX
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Conflict-Driven Heuristics for Mixed Integer Programming INFORMS Journal on Computing, 33(2), pp. 706-720, 2020 (preprint available as ZIB-Report 19-08) Jakob Witzig, Ambros Gleixner PDF (ZIB-Report)
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Conflict-Free Learning for Mixed Integer Programming Integration of AI and OR Techniques in Constraint Programming. CPAIOR 2020, pp. 521-530, LNCS, 2020 (preprint available as ZIB-Report 19-59) Jakob Witzig, Timo Berthold PDF (ZIB-Report)
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Data-driven approximation of the Koopman generator: Model reduction, system identification, and control Physica D: Nonlinear Phenomena, Vol.406, 2020 (epub ahead of print) Stefan Klus, Feliks Nüske, Sebastian Peitz, Jan-Hendrik Niemann, Cecilia Clementi, Christof Schütte BibTeX
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Day-ahead high-resolution forecasting of natural gas demand and supply in Germany with a hybrid model Applied Energy, 262(114486), 2020 Ying Chen, Xiuqin Xu, Thorsten Koch BibTeX
DOI
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Deep Neural Network Training with Frank-Wolfe 2020 Sebastian Pokutta, Christoph Spiegel, Max Zimmer BibTeX
arXiv
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Dictionary Learning for transcriptomics data reveals type-specific gene modules in a multi-class setting it - Information Technology, 62(3-4), 2020 Mona Rams, Tim Conrad BibTeX
DOI
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Effect of Model Reduction by Time Aggregation in Multiobjective Optimal Design of Energy Supply Systems by a Hierarchical MILP Method Conference, pp. 627-639, International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems, 2020 (in press) Ryohei Yokoyama, Kotaro Takeuchi, Yuji Shinano, Tetsuya Wakui BibTeX
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Efficient Enumeration of Acyclic Graph Orientations with Sources or Sinks Revisited ZIB-Report 20-05 Kai-Helge Becker, Benjamin Hiller PDF
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Far-field polarization signatures of surface optical nonlinearity in noncentrosymmetric semiconductors Sci. Rep., Vol.10, p. 10545, 2020 Anton Pakhomov, Franz Löchner, Lin Zschiedrich, Sina Saravi, Martin Hammerschmidt, Sven Burger, Thomas Pertsch, Frank Setzpfand BibTeX
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First Experiments with Structure-Aware Presolving for a Parallel Interior-Point Method Operations Research Proceedings 2019, pp. 105-111, 2020 (preprint available as ZIB-Report 19-39) Ambros Gleixner, Nils-Christian Kempke, Thorsten Koch, Daniel Rehfeldt, Svenja Uslu PDF (ZIB-Report)
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From Natural Gas towards Hydrogen - A Feasibility Study on Current Transport Network Infrastructure and its Technical Control ZIB-Report 20-27 Kai Hoppmann-Baum, Felix Hennings, Janina Zittel, Uwe Gotzes, Eva-Maria Spreckelsen, Klaus Spreckelsen, Thorsten Koch PDF
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Front Cover: Plug&Play Fiber‐Coupled 73 kHz Single‐Photon Source Operating in the Telecom O‐Band (Adv. Quantum Technol. 6/2020) Adv. Quantum Technol., Vol.3, p. 2070061, 2020 Anna Musiał, Kinga Żołnacz, Nicole Srocka, Oleh Kravets, Jan Große, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wojcik, Paweł Mergo, Kamil Dybka, Mariusz Dyrkacz, Michal Dlubek, Kristian Lauritsen, Andreas Bülter, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger, Sven Rodt, Wacław Urbanczyk, Grzegorz Sek, Stephan Reitzenstein BibTeX
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Graph Kernel Koopman Embedding for Human Microbiome Analysis Applied Network Science, 5(96), 2020 Kateryna Melnyk, Grègoire Montavon, Stefan Klus, Tim Conrad BibTeX
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How to calculate pH-dependent binding rates for receptor-ligand systems based on thermodynamic simulations with different binding motifs Molecular Simulation, 46(18), pp. 1443-1452, 2020 (preprint available as ) Sourav Ray, Vikram Sunkara, Christof Schütte, Marcus Weber BibTeX
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Image analysis pipeline for segmentation of a biological porosity network, the lacuno-canalicular system in stingray tesserae MethodsX, Vol.7, p. 100905, 2020 (preprint available as ) Merlind Schotte, Júlia Chaumel, Mason N. Dean, Daniel Baum BibTeX
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Implementing the Network Simplex for Hypergraphs Master's thesis, Freie Universität Berlin, Ralf Borndörfer, Niels Lindner, Boris Grimm (Advisors), 2020 Fabian Löbel BibTeX
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Learn to Relax: Integrating 0-1 Integer Linear Programming with Pseudo-Boolean Conflict-Driven Search Integration of AI and OR Techniques in Constraint Programming. CPAIOR 2020, pp. xxiv-xxvi, Vol.12296, LNCS, 2020 Jo Devriendt, Ambros Gleixner, Jakob Nordström BibTeX
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Lessons learned from gas network data preprocessing ZIB-Report 20-13 Inci Yueksel-Erguen, Janina Zittel, Ying Wang, Felix Hennings, Thorsten Koch PDF
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Linear Programming using Limited-Precision Oracles Mathematical Programming, 183(1-2), pp. 525-554, 2020 (preprint available as ZIB-Report 19-57) Ambros Gleixner, Daniel Steffy PDF (ZIB-Report)
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Massive Parallelization for Finding Shortest Lattice Vectors Based on Ubiquity Generator Framework 2020 SC20: International Conference for High Performance Computing, Networking, Storage and Analysis (SC), pp. 834-848, 2020 Yuji Shinano, N. Tateiwa, S. Nakamura, A. Yoshida, M. Yasuda, S. Kaji, K. Fujisawa BibTeX
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Maximal Quadratic-Free Sets Integer Programming and Combinatorial Optimization: 21th International Conference, IPCO 2020, pp. 307-321, 2020 (preprint available as ZIB-Report 19-56) Felipe Serrano, Gonzalo Muñoz PDF (ZIB-Report)
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Minimum Cycle Partition with Length Requirements Integration of Constraint Programming, Artificial Intelligence, and Operations Research, Emmanuel Hebrard, Nysret Musliu (Eds.), Springer International Publishing: Cham, pp. 273-282, 2020, ISBN: 978-3-030-58941-7 Kai Hoppmann-Baum, Gioni Mexi, Oleg Burdakov, Carl Johan Casselgren, Thorsten Koch BibTeX
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Modeling Optical Materials at the Single Scatterer Level: The Transition from Homogeneous to Heterogeneous Materials Adv. Theory Simul., Vol.3, p. 2000192, 2020 Daniel Werdehausen, Xavier Garcia Santiago, Sven Burger, Isabelle Staude, Thomas Pertsch, Carsten Rockstuhl, Manuel Decker BibTeX
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Modeling and Forecasting the Dynamics of the Natural Gas Transmission Network in Germany with the Demand and Supply Balance Constraint Applied Energy, 2020 Ying Chen, Nazgul Zakiyeva, Bangzhu Zhu, Thorsten Koch BibTeX
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Multi-period line planning with resource transfers Transportation Research Part C: Emerging Technologies, Vol.119, p. 102726, 2020 (preprint available as ZIB-Report 19-51) Guvenc Sahin, Amin Ahmadi, Ralf Borndörfer, Thomas Schlechte PDF (ZIB-Report)
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Network and Storage Mathematical Optimization for Efficient and Robust Energy Networks, Springer, 2020, ISBN: 978-3-030-57442-0 R. Schwarz, F. Lacalandra, L. Schewe, A. Bettinelli, D. Vigo, A. Bischi, T. Parriani, E. Martelli, K. Vuik, R. Lenz, H. Madsen, I. Blanco, D. Guericke, I. Yüksel-Ergün, J. Zittel BibTeX
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Node Partitioning and Subtours Creation Problem (NPSC) Bachelor's thesis, Technische Universität Berlin, Thorsten Koch, Kai Hoppmann (Advisors), 2020 Gioni Mexi PDF
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Nonlinear network autoregressive model with application to natural gas network forecasting Mathematics Japonica, 2020 (accepted for publication) Nazgul Zakiyeva, X. Xu PDF
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On Generalized Surrogate Duality in Mixed-Integer Nonlinear Programming Integer Programming and Combinatorial Optimization: 21th International Conference, IPCO 2020, pp. 322-337, 2020 (preprint available as ZIB-Report 19-55) Benjamin Müller, Gonzalo Muñoz, Maxime Gasse, Ambros Gleixner, Andrea Lodi, Felipe Serrano PDF (ZIB-Report)
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On the abs-polynomial expansion of piecewise smooth functions Optimization Methods and Software, 2020 (epub ahead of print, preprint available as ZIB-Report 20-14) Andreas Griewank, Tom Streubel, Caren Tischendorf PDF (ZIB-Report)
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On the relation between the extended supporting hyperplane algorithm and Kelley’s cutting plane algorithm Journal of Global Optimization, Vol.78, pp. 161-179, 2020 (preprint available as ZIB-Report 19-18) Felipe Serrano, Robert Schwarz, Ambros Gleixner PDF (ZIB-Report)
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Optimal Connected Subgraphs: Formulations and Algorithms ZIB-Report 20-23 Daniel Rehfeldt, Henriette Franz, Thorsten Koch PDF
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Optimal Line Planning in the Parametric City Master's thesis, Technische Universität Berlin, Ralf Borndörfer, Thorsten Koch, Niels Lindner (Advisors), 2020 Berenike Masing BibTeX
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Piecewise Polynomial Taylor Expansions - The Generalization of Faà di Bruno's Formula Modeling, Simulation and Optimization of Complex Processes HPSC 2018, pp. 63-82, 2020 (preprint available as ZIB-Report 18-24) Tom Streubel, Caren Tischendorf, Andreas Griewank PDF (ZIB-Report)
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Plug&play fibre-coupled 73 kHz single-photon source operating in the telecom O-band Adv. Quantum Technol., Vol.3, p. 2000018, 2020 Anna Musiał, Kinga Żołnacz, Nicole Srocka, Oleh Kravets, Jan Große, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wojcik, Paweł Mergo, Dybka Kamil, Mariusz Dyrkacz, Michal Dlubek, Kristian Lauritsen, Andreas Bülter, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger, Sven Rodt, Wacław Urbanczyk, Grzegorz Sek, Stephan Reitzenstein BibTeX
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arXiv
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Price-and-verify: a new algorithm for recursive circle packing using Dantzig–Wolfe decomposition Annals of Operations Research, 284(2), pp. 527-555, 2020 (preprint available as ZIB-Report 17-07) Ambros Gleixner, Stephen Maher, Benjamin Müller, João Pedro Pedroso PDF (ZIB-Report)
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Production and Demand Management Mathematical Optimization for Efficient and Robust Energy Networks, Springer, 2020, ISBN: 978-3-030-57442-0 M. Diekerhof, A. Monti, E. Lebedeva, A. H. Tkaczyk, I. Yüksel-Ergün, J. Zittel, L. F. Escudero, A. Soroudi, C. Helmberg, Ž. Kanovíc, M. Petkovic, F. Lacalandra, A. Frangioni, J. Lee, A. De Filippo, M. Lombardi, M. Milano, P. Ezran, Y. Haddad BibTeX
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Projection-Free Adaptive Gradients for Large-Scale Optimization 2020 Combettes Cryille W., Christoph Spiegel, Sebastian Pokutta BibTeX
arXiv
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Semi-automatic stitching of filamentous structures in image stacks from serial-section electron tomography bioRxiv, 2020 Norbert Lindow, Florian Brünig, Vincent J. Dercksen, Gunar Fabig, Robert Kiewisz, Stefanie Redemann, Thomas Müller-Reichert, Steffen Prohaska, Daniel Baum BibTeX
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Singular Value Decomposition of Operators on Reproducing Kernel Hilbert Spaces Advances om Dynamics, Optimization and Computation. Series: Studies in Systems, Decision and Control. A volume dedicated to Michael Dellnitz on his 60th birthday, Vol.304, pp. 109-131, Oliver Junge, O. Schütze, Gary Froyland, S. Ober-Blobaum, K. Padberg-Gehle (Eds.), Springer International, 2020, ISBN: 978-3-030-51264-4 Mattes Mollenhauer, Ingmar Schuster, Stefan Klus, Christof Schütte BibTeX
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Solving Previously Unsolved MIP Instances with ParaSCIP on Supercomputers by using up to 80,000 Cores ZIB-Report 20-16 Yuji Shinano, Tobias Achterberg, Timo Berthold, Stefan Heinz, Thorsten Koch, Michael Winkler PDF
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The SCIP Optimization Suite 7.0 ZIB-Report 20-10 Gerald Gamrath, Daniel Anderson, Ksenia Bestuzheva, Wei-Kun Chen, Leon Eifler, Maxime Gasse, Patrick Gemander, Ambros Gleixner, Leona Gottwald, Katrin Halbig, Gregor Hendel, Christopher Hojny, Thorsten Koch, Pierre Le Bodic, Stephen J. Maher, Frederic Matter, Matthias Miltenberger, Erik Mühmer, Benjamin Müller, Marc Pfetsch, Franziska Schlösser, Felipe Serrano, Yuji Shinano, Christine Tawfik, Stefan Vigerske, Fabian Wegscheider, Dieter Weninger, Jakob Witzig PDF
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Tropical Geometry Approach to Shortest Paths with Parameterized Arc Weights - A Case Study in Public Transportation Networks Master's thesis, Freie Universität Berlin, Rainer Sinn, Niels Lindner (Advisors), 2020 Erin Henning BibTeX
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Two-row and two-column mixed-integer presolve using hashing-based pairing methods EURO Journal on Computational Optimization, 8(3-4), pp. 205-240, 2020 Patrick Gemander, Wei-Kun Chen, Dieter Weninger, Leona Gottwald, Ambros Gleixner BibTeX
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Using two-dimensional Projections for Stronger Separation and Propagation of Bilinear Terms SIAM Journal on Optimization, 30(2), pp. 1339-1365, 2020 (preprint available as ZIB-Report 19-15) Benjamin Müller, Felipe Serrano, Ambros Gleixner PDF
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VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images arXiv, 2020 Anjany Sekuboyina, Amirhossein Bayat, Malek E. Husseini, Maximilian Löffler, Hongwei Li, Giles Tetteh, Jan Kukačka, Christian Payer, Darko Štern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Qingyue Wei, Kevin Brown, Matthias Wolf, Alexandre Kirszenberg, Élodie Puybareau, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke PDF
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Von Graphen zu Hypergraphen OR News, 2020 Isabel Beckenbach BibTeX
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Walking in the Shadow: A New Perspective on Descent Directions for Constrained Minimization Proceedings of NeurIPS, 2020 Hassan Mortagy, Swati Gupta, Sebastian Pokutta BibTeX
arXiv
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エネルギー供給システムの 設計および運用の階層的関係を考慮した最適化 (多目的最適設計へのモデル縮約の適用) エネルギー・資源学会第36回エネルギーシステム・経済・環境コンファレンス講演論文集, pp. 724-729, 2020 (in press) Kotaro Takeuchi, Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
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エネルギー供給システムの設計および運用の階層的関係を考慮した最適化 (k-メドイド法に基づく期間クラスタリングの適用) 日本機械学会関西支部第95期定時総会講演会講演論文集, pp. 1-4, 2020 (in press) Kotaro Takeuchi, Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
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階層的最適化手法の援用による エネルギー供給システムのロバスト最適設計 エネルギー・資源学会第36回エネルギーシステム・経済・環境コンファレンス講演論文集, pp. 730-735, 2020 (in press) Hiroki Kamada, Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
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階層的最適化手法を用いた エネルギー供給システムのロバスト性評価 日本機械学会関西支部第95期定時総会講演会講演論文集, pp. 1-4, 2020 (in press) Hiroki Kamada, Ryohei Yokoyama, Yuji Shinano, Tetsuya Wakui BibTeX
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2019
A Bilevel Model for Network Design and Pricing Based on a Level-of-Service Assessment Transportation Science, 53(6), pp. 1609-1626, 2019 Christine Tawfik, Sabine Limbourg BibTeX
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A Cut Separation Approach for the Rolling Stock Rotation Problem with Vehicle Maintenance 19th Symposium on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2019), Valentina Cacchiani, Alberto Marchetti-Spaccamela (Eds.), pp. 1:1-1:12, Vol.75, OpenAccess Series in Informatics (OASIcs), 2019 (epub ahead of print, preprint available as ZIB-Report 19-61) Boris Grimm, Ralf Borndörfer, Markus Reuther, Thomas Schlechte PDF
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A Status Report on Conflict Analysis in Mixed Integer Nonlinear Programming Integration of AI and OR Techniques in Constraint Programming. CPAIOR 2019, pp. 84-94, Vol.11494, LNCS, 2019 (preprint available as ZIB-Report 18-57) Jakob Witzig, Timo Berthold, Stefan Heinz PDF (ZIB-Report)
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A Sweep-Plane Algorithm for the Computation of the Volume of a Union of Polytopes Operations Research Proceedings 2018, Vol.Operations Research Proceedings, 2019 (preprint available as ZIB-Report 18-37) Lovis Anderson, Benjamin Hiller PDF (ZIB-Report)
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A Three-Phase Heuristic for Cyclic Crew Rostering with Fairness Requirements ZIB-Report 19-43 Thomas Breugem, Ralf Borndörfer, Thomas Schlechte, Christof Schulz PDF
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Accurate Automated Volumetry of Cartilage of the Knee using Convolutional Neural Networks: Data from the Osteoarthritis Initiative IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 40-43, 2019 (preprint available as ) Alexander Tack, Stefan Zachow BibTeX
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An Easy Way to Build Parallel State-of-the-art Combinatorial Optimization Problem Solvers: A Computational Study on Solving Steiner Tree Problems and Mixed Integer Semidefinite Programs by using ug[SCIP-*,*]-libraries Proceedings of the 9th IEEE Workshop Parallel / Distributed Combinatorics and Optimization, pp. 530-541, 2019 (preprint available as ZIB-Report 19-14) Yuji Shinano, Daniel Rehfeldt, Tristan Gally PDF (ZIB-Report)
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Analysis of long non-coding RNA and mRNA expression in bovine macrophages brings up novel 2 aspects of Mycobacterium avium subspecies paratuberculosis infections Scientific Reports in Nature, Vol.9, 2019 Pooja Gupta, Sarah Peter, Markus Jung, Astrid Lewin, Georg Hemmrich-Stanisak, Andre Franke, Max von Kleist, Christof Schütte, Ralf Einspanier, Soroush Sharbati, Jennifer zur Bruegge BibTeX
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Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care Clinical Microbiology and Infection, 25(3), pp. 380.e9-380.e16, 2019 Maren Alchikh, Tim Conrad, Xiaolin Ma, Eeva K. Broberg, P. Penttinen, J. Reiche, Barbara Biere, Brunhilde Schweiger, Barbara Rath, Christian Hoppe BibTeX
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Assessing the Effectiveness of (Parallel) Branch-and-bound Algorithms ZIB-Report 19-03 Stephen J. Maher, Ted Ralphs, Yuji Shinano PDF
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Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative Medical Image Analysis, 52(2), pp. 109-118, 2019 (preprint available as ZIB-Report 19-06) Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow PDF (ZIB-Report)
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Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative (Supplementary Material) Medical Image Analysis, 52(2), pp. 109-118, 2019 (OAI-ZIB dataset) Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow BibTeX
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BEAM-ME: Ein interdisziplinärer Beitrag zur Erreichung der Klimaziele OR-News : das Magazin der GOR, pp. 6-8, 2019 Thomas Breuer, Michael Bussieck, Frederik Fiand, Karl-Kiên Cao, Hans Christian Gils, Manuel Wetzel, Ambros Gleixner, Thorsten Koch, Daniel Rehfeldt, Dmitry Khabi BibTeX
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Building Optimal Steiner Trees on Supercomputers by Using up to 43,000 Cores Integration of Constraint Programming, Artificial Intelligence, and Operations Research. CPAIOR 2019, pp. 529-539, Vol.11494, LNCS, 2019 (preprint available as ZIB-Report 18-58) Yuji Shinano, Daniel Rehfeldt, Thorsten Koch PDF (ZIB-Report)
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Combining NP-Hard Reduction Techniques and Strong Heuristics in an Exact Algorithm for the Maximum-Weight Connected Subgraph Problem SIAM Journal on Optimization, 29(1), pp. 369-398, 2019 (preprint available as ZIB-Report 17-45) Daniel Rehfeldt, Thorsten Koch PDF (ZIB-Report)
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Computational Aspects of Infeasibility Analysis in Mixed Integer Programming ZIB-Report 19-54 Jakob Witzig, Timo Berthold, Stefan Heinz PDF
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Convex Relaxations for Quadratic On/Off Constraints and Applications to Optimal Transmission Switching INFORMS Journal on Computing, 32(3), pp. 682-696, 2019 Ksenia Bestuzheva, Hassan Hijazi, Carleton Coffrin BibTeX
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Cutting planes for families implying Frankl's conjecture Mathematics of Computation, 2019 (epub ahead of print) Jonad Pulaj BibTeX
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Deep Learning for Proteomics Data for Feature Selection and Classification Machine Learning and Knowledge Extraction. CD-MAKE 2019, A. Holzinger, P. Kieseberg, A. Tjoa, E. Weippl (Eds.), Vol.11713, Lecture Notes in Computer Science, 2019 Sahar Iravani, Tim Conrad BibTeX
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Digital Analysis of Nasal Airflow Facilitating Decision Support in Rhinosurgery Facial Plastic Surgery, 35(1), pp. 1-8, 2019 Thomas Hildebrandt, Jan Joris Bruening, Hans Lamecker, Stefan Zachow, Werner Heppt, Nora Schmidt, Leonid Goubergrits BibTeX
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Discerning the spatio-temporal disease patterns of surgically induced OA mouse models PLOS One, 14(4), 2019 Tobias Haase, Vikram Sunkara, Benjamin Kohl, Carola Meier, Patricia Bußmann, Jessica Becker, Michal Jagielski, Max von Kleist, Wolfgang Ertel BibTeX
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EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma PLOS ONE, 14(1), 2019 Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad BibTeX
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Ein neuer Ansatz zur Optimierung des Bilanzausgleichs in einem Gasmarktgebiet Zeitschrift für Energiewirtschaft, 2019 Uwe Gotzes BibTeX
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Ergodic SDEs on submanifolds and related numerical sampling schemes ESAIM: Mathematical Modelling and Numerical Analysis, 2019 Wei Zhang BibTeX
arXiv
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Exploiting Dual Degeneracy in Branching ZIB-Report 19-17 Timo Berthold, Gerald Gamrath, Domenico Salvagnin PDF
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Exploiting Symmetry in Mixed-Integer Nonlinear Programming Master's thesis, Technische Universität Berlin, Benjamin Müller (Advisor), 2019 Fabian Wegscheider PDF
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Frictional effect on stability of discontinuity interface in tangential velocity of a shallow-water flow Physics Letters A, 383(26), p. 125839, 2019 Liangbing Jin, Thi Thai Le, Yasuhide Fukumoto BibTeX
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Gas Network Benchmark Models Applications of Differential-Algebraic Equations: Examples and Benchmarks, Springer International Publishing, pp. 171-197, 2019, ISBN: 978-3-030-03718-5 (preprint available as ZIB-Report 17-73) Peter Benner, Sara Grundel, Christian Himpe, Christoph Huck, Tom Streubel, Caren Tischendorf PDF (ZIB-Report)
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Generation and Visual Exploration of Medical Flow Data: Survey, Research Trends, and Future Challenges Computer Graphics Forum, 38(1), pp. 87-125, 2019 Steffen Oeltze-Jaffra, Monique Meuschke, Mathias Neugebauer, Sylvia Saalfeld, Kai Lawonn, Gabor Janiga, Hans-Christian Hege, Stefan Zachow, Bernhard Preim BibTeX
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Improved optimization models for potential-driven network flow problems via ASTS orientations ZIB-Report 19-58 Kai-Helge Becker, Benjamin Hiller PDF
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Intersection cuts for factorable MINLP A. Lodi, V. Nagarajan (eds), Integer Programming and Combinatorial Optimization: 20th International Conference, IPCO 2019, pp. 385-398, Vol.11480, LNCS, 2019 (preprint available as ZIB-Report 18-59) Felipe Serrano PDF (ZIB-Report)
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Jarzynski's equality, fluctuation theorems, and variance reduction: Mathematical analysis and numerical algorithms Journal of Statistical Physics, 175(6), pp. 1214-1261, 2019 Carsten Hartmann, Christof Schütte, Wei Zhang BibTeX
arXiv
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Kelvin-Helmholtz instability in a shallow-water flow with a finite width Journal of Mathematical Physics, 60(1), p. 123101, 2019 Thi Thai Le BibTeX
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Learning chemical reaction networks from trajectory data SIAM Journal on Applied Dynamical Systems (SIADS), 18(4), pp. 2000-2046, 2019 Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte BibTeX
arXiv
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Linear Programming using Limited-Precision Oracles A. Lodi, V. Nagarajan (eds), Integer Programming and Combinatorial Optimization: 20th International Conference, IPCO 2019, pp. 399-412, 2019 Ambros Gleixner, Daniel Steffy BibTeX
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Local Rapid Learning for Integer Programs Integration of AI and OR Techniques in Constraint Programming. CPAIOR 2019, pp. 67-83, Vol.11494, LNCS, 2019 (preprint available as ZIB-Report 18-56) Timo Berthold, Peter Stuckey, Jakob Witzig PDF (ZIB-Report)
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Matchings and Flows in Hypergraphs Doctoral thesis, Freie Universität Berlin, Ralf Borndörfer, Winfried Hochstättler (Advisors), 2019 Isabel Beckenbach BibTeX
Research Campus MODAL
Model reduction by time aggregation for optimal design of energy supply systems by an MILP hierarchical branch and bound method Energy, Vol.181, pp. 782-792, 2019 Ryohei Yokoyama, Yuji Shinano, Yuki Wakayama, Tetsuya Wakui BibTeX
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Multidimensional Approximation of Nonlinear Dynamical Systems Journal of Computational and Nonlinear Dynamics, 14(6), 2019 Patrick Gelß, Stefan Klus, Jens Eisert, Christof Schütte BibTeX
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Optimization of handouts for rolling stock rotations Journal of Rail Transport Planning & Management, pp. 1-8, 2019 (preprint available as ZIB-Report ZR-16-73) Ralf Borndörfer, Boris Grimm, Markus Reuther, Thomas Schlechte PDF (ZIB-Report)
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Parallel PIPS-SBB: Multi-Level Parallelism For Stochastic Mixed-Integer Programs Computational Optimization and Applications, 2019 (epub ahead of print, preprint available as ZIB-Report 17-58) Lluis-Miquel Munguia, Geoffrey Oxberry, Deepak Rajan, Yuji Shinano PDF (ZIB-Report)
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Pathwise estimates for effective dynamics: the case of nonlinear vectorial reaction coordinates Multiscale Modeling and Simulation, pp. 1019-1051, 2019 Tony Lelièvre, Wei Zhang BibTeX
arXiv
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Prediction of Intermitted Flows in Large Gas Networks ZIB-Report 19-29 Inken Gamrath, Milena Petkovic PDF
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Presolve Reductions in Mixed Integer Programming INFORMS Journal on Computing, 2019 (epub ahead of print, preprint available as ZIB-Report 16-44) Tobias Achterberg, Robert E. Bixby, Zonghao Gu, Edward Rothberg, Dieter Weninger PDF (ZIB-Report)
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QPLIB: A Library of Quadratic Programming Instances Mathematical Programming Computation, 11(2), pp. 237-265, 2019 Fabio Furini, Emiliano Traversi, Pietro Belotti, Antonio Frangioni, Ambros Gleixner, Nick Gould, Leo Liberti, Andrea Lodi, Ruth Misener, Hans Mittelmann, Nikolaos V. Sahinidis, Stefan Vigerske, Angelika Wiegele BibTeX
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Re-optimizing ICE Rotations after a Tunnel Breakdown near Rastatt Proceedings of the 8th International Conference on Railway Operations Modelling and Analysis - RailNorrköping 2019, pp. 160-168, Linköping Electronic Conference Proceedings(069), 2019, ISBN: 978-91-7929-992-7 (epub ahead of print, preprint available as ZIB-Report 19-02) Ralf Borndörfer, Boris Grimm, Thomas Schlechte PDF
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Reduction Techniques for the Prize-Collecting Steiner Tree Problem and the Maximum-Weight Connected Subgraph Problem Networks, Vol.73, pp. 206-233, 2019 (preprint available as ZIB-Report 16-47) Daniel Rehfeldt, Thorsten Koch, Stephen J. Maher PDF (ZIB-Report)
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Regularized partially functional autoregressive model with application to high-resolution natural gas forecasting in Germany ZIB-Report 19-34 Ying Chen, Thorsten Koch, Xiaofei Xu PDF
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Solving Quadratic Programs to High Precision using Scaled Iterative Refinement Mathematical Programming Computation, Vol.11, pp. 421-455, 2019 (preprint available as ZIB-Report 18-04) Tobias Weber, Sebastian Sager, Ambros Gleixner PDF (ZIB-Report)
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Statistical Shape Models - Understanding and Mastering Variation in Anatomy Biomedical Visualisation, Paul M. Rea (Ed.), Springer Nature Switzerland AG, 1, pp. 67-84, 2019, ISBN: 978-3-030-19384-3, ISBN: 978-3-030-19385-0 (preprint available as ZIB-Report 19-13) Felix Ambellan, Hans Lamecker, Christoph von Tycowicz, Stefan Zachow PDF (ZIB-Report)
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Strategic Planning of Rolling Stock Rotations for Public Tenders Proceedings of the 8th International Conference on Railway Operations Modelling and Analysis - RailNorrköping 2019, pp. 148-159, Linköping Electronic Conference Proceedings(069), 2019, ISBN: 978-91-7929-992-7 Timo Berthold, Boris Grimm, Markus Reuther, Stanley Schade, Thomas Schlechte PDF
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Structure-driven fix-and-propagate heuristics for mixed integer programming Mathematical Programming Computation, 11(4), pp. 675-702, 2019 (preprint available as ZIB-Report 17-56) Gerald Gamrath, Timo Berthold, Stefan Heinz, Michael Winkler PDF (ZIB-Report)
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Tackling Industrial-Scale Supply Chain Problems by Mixed-Integer Programming Journal of Computational Mathematics, Vol.37, pp. 866-888, 2019 (preprint available as ZIB-Report 16-45) Gerald Gamrath, Ambros Gleixner, Thorsten Koch, Matthias Miltenberger, Dimitri Kniasew, Dominik Schlögel, Alexander Martin, Dieter Weninger PDF (ZIB-Report)
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The Healthy Nasal Cavity - Characteristics of Morphology and Related Airflow Based on a Statistical Shape Model Viewed from a Surgeon’s Perspective Facial Plastic Surgery, 35(1), pp. 9-13, 2019 Thomas Hildebrandt, Jan Joris Bruening, Nora Laura Schmidt, Hans Lamecker, Werner Heppt, Stefan Zachow, Leonid Goubergrits BibTeX
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Visible points, the separation problem, and applications to MINLP ZIB-Report 19-38 Felipe Serrano PDF
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alsoMATH - A Database for Mathematical Algorithms and Software Vol.2019, Wolfgang Dalitz (Ed.), Cezary Kaliszyk, 2019 (epub ahead of print) BibTeX
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2018
A Decomposition Approach for Optimal Gas Network Extension with a Finite Set of Demand Scenarios Optimization and Engineering, 19(2), pp. 297-326, 2018 Jonas Schweiger, Frauke Liers PDF
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A Hypergraph Network Simplex Algorithm Operations Research Proceedings 2017, Natalia Kliewer, Jan Fabian Ehmke, Ralf Borndörfer (Eds.), pp. 309-316, Vol.Operations Research Proceedings 2017, 2018 (preprint available as ZIB-Report 17-36) Isabel Beckenbach PDF (ZIB-Report)
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A Simple Way to Compute the Number of Vehicles That Are Required to Operate a Periodic Timetable 18th Workshop on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2018), pp. 16:1-16:15, Vol.65, OpenAccess Series in Informatics (OASIcs), 2018 (preprint available as ) Ralf Borndörfer, Marika Karbstein, Christian Liebchen, Niels Lindner BibTeX
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A System to Evaluate Gas Network Capacities: Concepts and Implementation European Journal of Operational Research, 270(3), pp. 797-808, 2018 (preprint available as ZIB-Report 18-11) Benjamin Hiller, Thorsten Koch, Lars Schewe, Robert Schwarz, Jonas Schweiger PDF (ZIB-Report)
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A fast Flow based Heuristic for MIP modelled SCM Problems Master's thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2018 Jenia Scheizel BibTeX
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A multiscale perturbation expansion approach for Markov state modeling of non-stationary molecular dynamics SIAM J. Multiscale Model. Simul., 16(4), pp. 1455-1485, 2018 (preprint available as ) Péter Koltai, Christof Schütte BibTeX
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ASTS Orientations on Undirected Graphs: Structural analysis and enumeration ZIB-Report 18-31 Kai-Helge Becker, Benjamin Hiller PDF
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Adaptive Algorithmic Behavior for Solving Mixed Integer Programs Using Bandit Algorithms OR 2018: International Conference on Operations Research, Operations Research 2018 Proceedings, 2018 (accepted for publication, preprint available as ZIB-Report 18-36) Gregor Hendel, Matthias Miltenberger, Jakob Witzig PDF (ZIB-Report)
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Adaptive Large Neighborhood Search for Mixed Integer Programming Mathematical Programming Computation, 2018 (under review, preprint available as ZIB-Report 18-60) Gregor Hendel PDF (ZIB-Report)
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An Efficient Riemannian Statistical Shape Model using Differential Coordinates Medical Image Analysis, 43(1), pp. 1-9, 2018 (preprint available as ) Christoph von Tycowicz, Felix Ambellan, Anirban Mukhopadhyay, Stefan Zachow BibTeX
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An Open Newton Method for Piecewise Smooth Systems ZIB-Report 18-43 Manuel Radons, Lutz Lehmann, Tom Streubel, Andreas Griewank PDF
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Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care. Clinical Microbiology and Infection Clinical Microbiology and Infection, pp. 1-1, 2018 (accepted for publication) Maren Alchikh, Tim Conrad, Christian Hoppe, Xiaolin Ma, Eeva K. Broberg, P. Penttinen, J. Reiche, Barbara Biere, Brunhilde Schweiger, Barbara Rath BibTeX
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Associations of postoperative mortality with the time of day, week and year Anaesthesia, 2018 (accepted for publication) F. Kork, Claudia Spies, Tim Conrad, B. Weiss, T. Roenneberg, K.-D. Wernecke, Felix Balzer BibTeX
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Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative Medical Imaging with Deep Learning, 2018 Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow PDF
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Benefits and Limitations of Simplified Transient Gas Flow Formulations Operations Research Proceedings 2017, pp. 231-237, Vol.Operations Research Proceedings, 2018 (preprint available as ZIB-Report 17-39) Felix Hennings PDF (ZIB-Report)
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Calculation of clinch and elimination numbers for sports leagues with multiple tiebreaking criteria ZIB-Report 18-51 Satoshi Ito, Yuji Shinano PDF
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Can we distinguish respiratory viral infections based on clinical features? A prospective pediatric cohort compared to systematic literature review Medical Virology, 28(5), pp. 1-12, 2018 (accepted for publication) Xiaolin Ma, Tim Conrad, Maren Alchikh, J. Reiche, Brunhilde Schweiger, Barbara Rath BibTeX
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Changes in Knee Shape and Geometry Resulting from Total Knee Arthroplasty Journal of Engineering in Medicine, 232(1), pp. 67-79, 2018 Mohsen Akbari Shandiz, Paul Boulos, Stefan Sævarsson, Heiko Ramm, Chun Kit Fu, Stephen Miller, Stefan Zachow, Carolyn Anglin BibTeX
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Chvátal’s Conjecture Holds for Ground Sets of Seven Elements ZIB-Report 18-49 Leon Eifler, Ambros Gleixner, Jonad Pulaj PDF
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Clairvoyant Restarts in Branch-and-Bound Search Using Online Tree-Size Estimation AAAI-19: Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2018 (accepted for publication, preprint available as ZIB-Report 19-11) Daniel Anderson, Gregor Hendel, Pierre Le Bodic, Jan Merlin Viernickel PDF (ZIB-Report)
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Clinical characteristics and disease severity associated with adenovirus infections in infants and children - discovery of a novel adenovirus, HAdV-D80 Clinical Infectious Diseases, 2018 (under review) Patrick Obermeier, A. Heim, Barbara Biere, E. Hage, Maren Alchikh, Tim Conrad, Brunhilde Schweiger, Barbara Rath BibTeX
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Computational aspects of the Generalized Trapezoidal Rule ZIB-Report 18-23 (submitted to Optimization Methods and Software) Richard Hasenfelder, Lutz Lehmann, Manuel Radons, Tom Streubel, Christian Strohm, Andreas Griewank PDF
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Conflict-free railway track assignment at depots Journal of Rail Transport Planning & Management, 2018 (epub ahead of print) Brady Gilg, Torsten Klug, Rosemarie Martienssen, Joseph Paat, Thomas Schlechte, Christof Schulz, Senan Seymen, Alexander Tesch PDF
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Data-driven model reduction and transfer operator approximation Journal of Nonlinear Science, 28(3), pp. 985-1010, 2018 Stefan Klus, Feliks Nüske, Peter Koltai, Hao Wu, Ioannis Kevrekidis, Christof Schütte, Frank Noé BibTeX
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Demand-Driven Line Planning with Selfish Routing Operations Research Proceedings 2017, pp. 687-692, 2018 (preprint available as ZIB-Report 17-38) Malte Renken, Amin Ahmadi, Ralf Borndörfer, Guvenc Sahin, Thomas Schlechte PDF (ZIB-Report)
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Designing and Implementing Algorithms for Mixed-Integer Nonlinear Optimization (Dagstuhl Seminar 18081) Dagstuhl Reports, 8(2), pp. 64-87, 2018 Pierre Bonami, Ambros Gleixner, Jeff Linderoth, Ruth Misener BibTeX
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Ein mathematisches Modell zur Beschreibung von Preissystemen im öV ZIB-Report 18-47 Ralf Borndörfer, Ricardo Euler, Marika Karbstein, Fabian Mett PDF
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Estimation of the Near-Surface Air Temperature during the Day and Nighttime from MODIS in Berlin, Germany International Journal of Advanced Remote Sensing and GIS, 7(1), pp. 2478-2517, 2018 Forough Marzban, Tim Conrad, Pouria Marban, Sahar Sodoudi BibTeX
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Exploiting structure in non-convex quadratic optimization ZIB-Report 18-35 Jonas Schweiger PDF
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Exploring the Numerics of Branch-and-Cut for Mixed Integer Linear Optimization Operations Research Proceedings 2017, pp. 151-157, 2018 (preprint available as ZIB-Report 17-43) Matthias Miltenberger, Ted Ralphs, Daniel Steffy PDF (ZIB-Report)
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Feature-Based Algorithm Selection for Mixed Integer Programming ZIB-Report 18-17 Alexander Georges, Ambros Gleixner, Gorana Gojic, Robert Lion Gottwald, David Haley, Gregor Hendel, Bartlomiej Matejczyk PDF
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FiberSCIP - A shared memory parallelization of SCIP INFORMS Journal on Computing, 30(1), pp. 11-30, 2018 (preprint available as ZIB-Report 13-55) Yuji Shinano, Stefan Heinz, Stefan Vigerske, Michael Winkler PDF (ZIB-Report)
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Finding Maximum Minimum Cost Flows to Evaluate Gas Network Capacities Operations Research Proceedings 2017, pp. 339-346, 2018, ISBN: 978-3-319-89919-0 (preprint available as ZIB-Report 16-68) Kai Hoppmann, Robert Schwarz PDF (ZIB-Report)
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Forecasting Natural Gas Flows in Large Networks Machine Learning, Optimization, and Big Data. MOD 2017., Lecture Notes in Computer Science(vol 10710), pp. 158-171, 2018 M. Dell’Amico, Natalia Selini Hadjidimitriou, Thorsten Koch, Milena Petkovic BibTeX
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Forecasting day-ahead high-resolution natural-gas demand and supply in Germany Applied Energy, pp. 1091-1110, 2018 Ying Chen, Wee Song Chua, Thorsten Koch BibTeX
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Four Good Reasons to Use an Interior Point Solver Within a MIP Solver Kliewer N., Ehmke J., Borndörfer R. (eds) Operations Research Proceedings 2017, pp. 159-164, 2018 (preprint available as ZIB-Report 17-42) Timo Berthold, Michael Perregaard, Csaba Mészáros PDF (ZIB-Report)
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Freight Train Routing Handbook of Optimization in the Railway Industry, Springer International Publishing, pp. 73-92, 2018, ISBN: 978-3-319-72152-1 Torsten Klug BibTeX
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Generic Construction and Efficient Evaluation of Network DAEs and Their Derivatives in the Context of Gas Networks Operations Research Proceedings 2017, pp. 627-632, 2018, ISBN: 978-3-319-89920-6 (preprint available as ZIB-Report 17-41) Tom Streubel, Christian Strohm, Philipp Trunschke, Caren Tischendorf PDF (ZIB-Report)
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Hall’s and Kőnig’s theorem in graphs and hypergraphs Discrete Mathematics, 341(10), pp. 2753-2761, 2018 (preprint available as ZIB-Report 15-45) Isabel Beckenbach, Ralf Borndörfer PDF (ZIB-Report)
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Handbook of Optimization in the Railway Industry Ralf Borndörfer, Torsten Klug, Leonardo Lamorgese, Carlo Mannino, Markus Reuther, Thomas Schlechte (Eds.), Springer Verlag, 2018, ISBN: 978-3-319-72152-1 Erwin Abbink, Andreas Bärmann, Nikola Bešinovic, Markus Bohlin, Valentina Cacchiani, Gabrio Caimi, Stefano de Fabris, Twan Dollevoet, Frank Fischer, Armin Fügenschuh, Laura Galli, Rob M.P. Goverde, Ronny Hansmann, Henning Homfeld, Dennis Huisman, Marc Johann, Torsten Klug, Johanna Törnquist Krasemann, Leo Kroon, Leonardo Lamorgese, Frauke Liers, Carlo Mannino, Giorgio Medeossi, Dario Pacciarelli, Markus Reuther, Thomas Schlechte, Marie Schmidt, Anita Schöbel, Hanno Schülldorf, Anke Stieber, Sebastian Stiller, Paolo Toth, Uwe Zimmermann BibTeX
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Improving branching for disjunctive polyhedral models using approximate convex decompositions ZIB-Report 17-68 Benjamin Hiller, Tom Walther PDF
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Improving relaxations for potential-driven network flow problems via acyclic flow orientations ZIB-Report 18-30 Benjamin Hiller, Kai-Helge Becker PDF
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Integrating Lipschitzian dynamical systems using piecewise algorithmic differentiation Optimization Methods and Software, Vol.33, pp. 1089-1107, 2018 (preprint available as ZIB-Report 17-44) Andreas Griewank, Richard Hasenfelder, Manuel Radons, Lutz Lehmann, Tom Streubel PDF (ZIB-Report)
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Knee Menisci Segmentation using Convolutional Neural Networks: Data from the Osteoarthritis Initiative Osteoarthritis and Cartilage, 26(5), pp. 680-688, 2018 (preprint available as ) Alexander Tack, Anirban Mukhopadhyay, Stefan Zachow BibTeX
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Kombilösung: Optimierung des Liniennetzes in Karlsruhe ZIB-Report 18-45 (Der Nahverkehr 1-2, p. 33-38, 2019) Ralf Borndörfer, Ascan Egerer, Marika Karbstein, Ralf Messerschmidt, Marc Perez, Steven Pfisterer, Petra Strauß PDF
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MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations Journal of Chemical Physics, 148(21), 2018 Manuel Dibak, Mauricio J. del Razo, David de Sancho, Christof Schütte, Frank Noé BibTeX
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MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations Journal of Chemical Physics, 148(214107), 2018 Manuel Dibak, Mauricio J. del Razo, David De Sancho, Christof Schütte, Frank Noé BibTeX
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Mathematical optimization of joint order batching and picker routing problems Master's thesis, Freie Universität Berlin, Ralf Borndörfer (Advisor), 2018 Ekaterina Oleynikova BibTeX
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Measuring the impact of branching rules for mixed-integer programming Operations Research Proceedings 2017, pp. 165-170, 2018 (preprint available as ZIB-Report 17-34) Gerald Gamrath, Christoph Schubert PDF (ZIB-Report)
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Mixed-Integer Programming for Cycle Detection in Non-reversible Markov Processes Multiscale Modeling and Simulation, 16(1), pp. 248-265, 2018 (preprint available as ZIB-Report 16-39) Jakob Witzig, Isabel Beckenbach, Leon Eifler, Konstantin Fackeldey, Ambros Gleixner, Andreas Grever, Marcus Weber PDF (ZIB-Report)
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Model Reduction by Time Aggregation for Optimal Design of Energy Supply Systems by an MILP Hierarchical Branch and Bound Method Proceedings of the 31st International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems (ECOS 2018), 2018 Ryohei Yokoyama, Yuji Shinano, Yuki Wakayama, Tetsuya Wakui BibTeX
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Modelling compressor stations in gas networks ZIB-Report 17-67 Benjamin Hiller, Tom Walther PDF
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On Finding Subpaths With High Demand Operations Research Proceedings 2017, pp. 355-360, 2018 (preprint available as ) Stephan Schwartz, Ralf Borndörfer, Leonardo Balestrieri BibTeX
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On the performance of NLP solvers within global MINLP solvers Operations Research Proceedings 2017, pp. 633-639, 2018 (preprint available as ZIB-Report 17-35) Benjamin Müller, Renke Kuhlmann, Stefan Vigerske PDF (ZIB-Report)
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Optimal Design of a Gas Turbine Cogeneration Plant by a Hierarchical Optimization Method With Parallel Computing ASME Turbo Expo 2018: Turbomachinery Technical Conference and Exposition, Vol.3, 2018 Ryohei Yokoyama, Yuji Shinano, Yuji Wakayamaa, Tetsuya Wakui BibTeX
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Optimal data-driven estimation of generalized Markov state models for non-equilibrium dynamics Computation, 6(1), 2018 Peter Koltai, Hao Wu, Frank Noé, Christof Schütte PDF
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Optimierung von Deployment- und Umgebungs-Integrität durch ein dezentrales Konfigurationsrepository auf Basis einer Blockchain Master's thesis, Technische Universität Berlin, Thorsten Koch, Ralf Borndörfer (Advisors), 2018 Christopher Wyczik BibTeX
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Optimization of Rolling Stock Rotations Handbook of Optimization in the Railway Industry, Springer International Publishing, pp. 213-241, 2018, ISBN: 978-3-319-72152-1 Markus Reuther, Thomas Schlechte BibTeX
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Optimizing Large-Scale Linear Energy System Problems with Block Diagonal Structure by Using Parallel Interior-Point Methods Operations Research Proceedings 2017, pp. 641-647, 2018 (preprint available as ZIB-Report 17-75) Thomas Breuer, Michael Bussieck, Karl-Kien Cao, Felix Cebulla, Frederik Fiand, Hans Christian Gils, Ambros Gleixner, Dmitry Khabi, Thorsten Koch, Daniel Rehfeldt, Manuel Wetzel PDF (ZIB-Report)
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ParaXpress: An Experimental Extension of the FICO Xpress-Optimizer to Solve Hard MIPs on Supercomputers Optimization Methods & Software, 33(3), pp. 530-539, 2018 Yuji Shinano, Timo Berthold, Stefan Heinz BibTeX
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Parallel Solvers for Mixed Integer Linear Optimization Handbook of Parallel Constraint Reasoning, pp. 283-336, Youssef Hamadi (Ed.), Springer Nature, 2018 (preprint available as ZIB-Report 16-74) Ted Ralphs, Yuji Shinano, Timo Berthold, Thorsten Koch PDF (ZIB-Report)
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Parallelization of the FICO Xpress Optimizer Optimization Methods and Software, 33(3), pp. 518-529, 2018 Timo Berthold, James Farmer, Stefan Heinz, Michael Perregaard BibTeX
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Piecewise linear secant approximation via algorithmic piecewise differentiation Optimization Methods and Software, 33(4-6), pp. 1108-1126, 2018 (preprint available as ZIB-Report 16-54) Andreas Griewank, Tom Streubel, Lutz Lehmann, Manuel Radons, Richard Hasenfelder PDF (ZIB-Report)
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Proceedings of the 18th Workshop on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems Ralf Borndörfer, Sabine Storandt (Eds.), Dagstuhl Publishing, Saarbrücken/Wadern, Germany, 2018, ISBN: ISBN 978-3-95977-096-5 BibTeX
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Railway Track Allocation Handbook of Optimization in the Railway Industry, Springer International Publishing, pp. 141-160, 2018, ISBN: 978-3-319-72152-1 Gabrio Caimi, Frank Fischer, Thomas Schlechte BibTeX
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Reduction-based exact solution of prize-collecting Steiner tree problems ZIB-Report 18-55 Daniel Rehfeldt, Thorsten Koch PDF
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Reusable building blocks in biological systems Journal of the Royal Society Interface, 15(149), pp. 1-10, 2018 (accepted for publication) Victor Mireles, Tim Conrad BibTeX
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SCIP-Jack—a solver for STP and variants with parallelization extensions: An update Operations Research Proceedings 2017, pp. 191-196, 2018 (preprint available as ZIB-Report 18-05) Daniel Rehfeldt, Thorsten Koch PDF (ZIB-Report)
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SCIP: Global Optimization of Mixed-Integer Nonlinear Programs in a Branch-and-Cut Framework Optimization Methods & Software, 33(3), pp. 563-593, 2018 (preprint available as ZIB-Report 16-24) Stefan Vigerske, Ambros Gleixner PDF (ZIB-Report)
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Separation of Cycle Inequalities in Periodic Timetabling ZIB-Report 18-16 (Discrete Optimization) (accepted for publication) Ralf Borndörfer, Heide Hoppmann, Marika Karbstein, Niels Lindner PDF
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Software Knowledge Management and swMATH Fachgruppe Didaktik der Mathematik der Universität Paderborn, pp. 401-404, 2018 Wolfgang Dalitz, Hagen Chrapary, Wolfram Sperber BibTeX
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Software Products, Software Versions, Archiving of Software, and swMATH Mathematical Software – ICMS 2018, pp. 123-127, 2018 Wolfgang Dalitz, Hagen Chrapary BibTeX
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Solving the Time-Dependent Shortest Path Problem Using Super-Optimal Wind Operations Research Proceedings 2017, Natalia Kliewer, Jan Fabian Ehmke, Ralf Borndörfer (Eds.), 2018 Adam Schienle BibTeX
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Statistical analysis of the first passage path ensemble of jump processes Journal of Statistical Physics, Vol.170, pp. 809-843, 2018 Max von Kleist, Christof Schütte, Wei Zhang BibTeX
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Strong Convex Nonlinear Relaxations of the Pooling Problem ZIB-Report 18-12 James Luedtke, Claudia D'Ambrosio, Jeff Linderoth, Jonas Schweiger PDF
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Strong Convex Nonlinear Relaxations of the Pooling Problem: Extreme Points ZIB-Report 18-13 James Luedtke, Claudia D'Ambrosio, Jeff Linderoth, Jonas Schweiger PDF
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Structure-based Decomposition for Pattern-Detection for Railway Timetables Operations Research Proceedings 2017, pp. 715-721, 2018 (preprint available as ZIB-Report 17-40) Stanley Schade, Thomas Schlechte, Jakob Witzig PDF (ZIB-Report)
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Tensor-based dynamic mode decomposition Nonlinearity, 31(7), 2018 Stefan Klus, Patrick Gelß, Sebastian Peitz, Christof Schütte BibTeX
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The Graph Segmentation Problem INOC 2017 – 8th International Network Optimization Conference, pp. 35-44, Vol.64, Electronic Notes in Discrete Mathematics, 2018 (preprint available as ) Ralf Borndörfer, Stephan Schwartz, Gerald Bartz BibTeX
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The Jeep Problem: A Flexible MIP Formulation Journal of Nepal Mathematical Society, Vol.1, pp. 11-17, 2018 Uwe Gotzes, Claudia Gotzes BibTeX
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The Rolling Stock Rotation Planning Problem under Revenue Considerations Proceedings of the Rail Transport Demand Management Conference, 2018 (preprint available as ZIB-Report 19-01) Boris Grimm, Ralf Borndörfer, Christof Schulz, Steffen Weider PDF (ZIB-Report)
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The SCIP Optimization Suite 6.0 ZIB-Report 18-26 Ambros Gleixner, Michael Bastubbe, Leon Eifler, Tristan Gally, Gerald Gamrath, Robert Lion Gottwald, Gregor Hendel, Christopher Hojny, Thorsten Koch, Marco Lübbecke, Stephen J. Maher, Matthias Miltenberger, Benjamin Müller, Marc Pfetsch, Christian Puchert, Daniel Rehfeldt, Franziska Schlösser, Christoph Schubert, Felipe Serrano, Yuji Shinano, Jan Merlin Viernickel, Matthias Walter, Fabian Wegscheider, Jonas T. Witt, Jakob Witzig PDF
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The Tight Cut Decomposition of Matching Covered Uniformable Hypergraphs ZIB-Report 18-61 Isabel Beckenbach, Meike Hatzel, Sebastian Wiederrecht PDF
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The Ubiquity Generator Framework: 7 Years of Progress in Parallelizing Branch-and-Bound Operations Research Proceedings 2017, pp. 143-149, 2018 (preprint available as ZIB-Report 17-60) Yuji Shinano PDF (ZIB-Report)
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The daily tail assignment problem under operational uncertainty using look-ahead maintenance constraints European Journal of Operational Research, 264(2), pp. 534-547, 2018 (preprint available as ZIB-Report 15-56) Stephen J. Maher, Guy Desaulniers, Francois Soumis PDF (ZIB-Report)
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Timetable Sparsification by Rolling Stock Rotation Optimization Operations Research 2017, pp. 723-728, 2018 (preprint available as ZIB-Report 17-63) Ralf Borndörfer, Matthias Breuer, Boris Grimm, Markus Reuther, Stanley Schade, Thomas Schlechte PDF (ZIB-Report)
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Transformations for the Prize-Collecting Steiner Tree Problem and the Maximum-Weight Connected Subgraph Problem to SAP Journal of Computational Mathematics, 36(3), pp. 459-468, 2018 (preprint available as ZIB-Report 16-36) Daniel Rehfeldt, Thorsten Koch PDF (ZIB-Report)
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Validation of a Statistical Shape Model for Acetabular Bone Defect Analysis ISTA 2018 London Abstract Book, 2018 (accepted for publication) G. Hettich, R. A. Schierjott, C. Schilling, A. Maas, Heiko Ramm, Matthias Bindernagel, Hans Lamecker, T. M. Grupp BibTeX
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2017
A Combinatorial Proof of a König-type Theorem for Unimodular Hypergraphs ZIB-Report 17-27 (under review) Isabel Beckenbach, Britta Peis, Oliver Schaudt, Robert Scheidweiler PDF
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A Propagation Approach to Acyclic Rolling Stock Rotation Optimization Proceedings of the IAROR conference RailLille, 2017 (preprint available as ZIB-Report 17-24) Boris Grimm, Ralf Borndörfer, Markus Reuther, Stanley Schade, Thomas Schlechte PDF (ZIB-Report)
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A Re-optimization Approach for Train Dispatching Operations Research Proceedings 2016, pp. 645-651, 2017 (preprint available as ZIB-Report 16-49) Frank Fischer, Boris Grimm, Torsten Klug, Thomas Schlechte PDF (ZIB-Report)
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A System to Evaluate Gas Network Capacities: Concepts and Implementation ZIB-Report 17-03 Benjamin Hiller, Thorsten Koch, Lars Schewe, Robert Schwarz, Jonas Schweiger PDF
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Addressing multi-label imbalance problem of Surgical Tool Detection using CNN International Journal of Computer Assisted Radiology and Surgery, 12(6), pp. 1013-1020, 2017 Manish Sahu, Anirban Mukhopadhyay, Angelika Szengel, Stefan Zachow PDF
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Airline scheduling and disruption management L. Budd, S. Ison, eds., Air transportation management: an international perspective, Routledge: New York, pp. 151-167, 2017, ISBN: 9781472451064 Cheng-Lung Wu, Stephen J. Maher BibTeX
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Analysis of operating modes of complex compressor stations Proceedings of Operations Research 2016, pp. 251-257, 2017 (preprint available as ZIB-Report 16-61) Benjamin Hiller, René Saitenmacher, Tom Walther PDF (ZIB-Report)
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Better Interpretable Models for Proteomics Data Analysis Using rule-based Mining Springer Lecture Notes in Artificial Intelligence, p. studi, 2017 (accepted for publication) Fahrnaz Jayrannejad, Tim Conrad BibTeX
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Conflict Driven Diving for Mixed Integer Programming ZIB-Report 17-69 Jakob Witzig PDF
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Conflict-Free Railway Track Assignment at Depots Proceedings of the IAROR conference RailLille, 2017 (preprint available as ZIB-Report 17-23) Brady Gilg, Torsten Klug, Rosemarie Martienssen, Joseph Paat, Thomas Schlechte, Christof Schulz, Sinan Seymen, Alexander Tesch PDF (ZIB-Report)
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Cost Projection Methods for the Shortest Path Problem with Crossing Costs 17th Workshop on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2017), Gianlorenzo D'Angelo, Twan Dollevoet (Eds.), Vol.59, 2017 (preprint available as ) Marco Blanco, Ralf Borndörfer, Nam-Dung Hoang, Anton Kaier, Pedro Maristany de las Casas, Thomas Schlechte, Swen Schlobach BibTeX
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Cutting Planes for Union-Closed Families Doctoral thesis, Technische Universität Berlin, Martin Grötschel, Ralf Borndörfer (Advisors), 2017 Jonad Pulaj BibTeX
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Degeneriertheit im Simplexverfahren Master's thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2017 Andreas Teuchert BibTeX
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Design, Concepts, and State of the Art of the swMATH Service Mathematics in Computer Science, 11(3-4), pp. 469-481, 2017 (preprint available as ZIB-Report 17-11) Hagen Chrapary, Wolfgang Dalitz, Winfried Neun, Wolfram Sperber PDF (ZIB-Report)
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Designing Inspector Rosters with Optimal Strategies Operations Research Proceedings 2016, pp. 217-223, 2017 (preprint available as ) Stephan Schwartz, Thomas Schlechte, Elmar Swarat BibTeX
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Distributed Domain Propagation 16th International Symposium on Experimental Algorithms (SEA 2017), pp. 6:1-6:11, Vol.75, Leibniz International Proceedings in Informatics (LIPIcs), 2017 (preprint available as ZIB-Report 16-71) Robert Lion Gottwald, Stephen J. Maher, Yuji Shinano PDF (ZIB-Report)
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Educating parents about the vaccination status of their children: A user-centered mobile application Preventive Medicine Reports, Vol.5, pp. 241-250, 2017 (accepted for publication) L. Seeber, Tim Conrad, Christian Hoppe, Patrick Obermeier, X. Chen, K. Karsch, S. Muehlhans, Franziska Tief, Sindy Boettcher, S. Diedrich, Brunhilde Schweiger, Barbara Rath BibTeX
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Epithelial Mesenchymal Transition Network-based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data Genomics and Computational Biology, 3(3), pp. 1-13, 2017 (accepted for publication) Shao Borong, Carlo Cannistraci, Tim Conrad BibTeX
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Experiments with Conflict Analysis in Mixed Integer Programming Integration of AI and OR Techniques in Constraint Programming. CPAIOR 2017, pp. 211-222, Vol.10335, LNCS, 2017 (preprint available as ZIB-Report 16-63) Jakob Witzig, Timo Berthold, Stefan Heinz PDF (ZIB-Report)
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Exploiting structure in non-convex quadratic optimization and gas network planning under uncertainty Doctoral thesis, Technische Universität Berlin, Thorsten Koch, Andrea Lodi (Advisors), 2017 Jonas Schweiger BibTeX
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Feasibility-based bound tightening via linear programming Bachelor's thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2017 William Wischlinsky BibTeX
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From feasibility to improvement to proof: three phases of solving mixed-integer programs Optimization Methods and Software, 33(3), pp. 499-517, 2017 (preprint available as ZIB-Report 16-78) Timo Berthold, Gregor Hendel, Thorsten Koch PDF (ZIB-Report)
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GasLib – A Library of Gas Network Instances Data, 2(4), 2017 Martin Schmidt, Denis Assmann, Robert Burlacu, Jesco Humpola, Imke Joormann, Nikolaos Kanelakis, Thorsten Koch, Djamal Oucherif, Marc Pfetsch, Lars Schewe, Robert Schwarz, Matthias Sirvent BibTeX
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Generalized preprocessing techniques for Steiner tree and maximum-weight connected subgraph problems ZIB-Report 17-57 Daniel Rehfeldt, Thorsten Koch PDF
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Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ) Stefanie Winkelmann, Christof Schütte PDF
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Improving the performance of DICOPT in convex MINLP problems using a feasibility pump Optimization Methods and Software, 2017 (revision under review) David E. Bernal, Stefan Vigerske, Francisco Trespalacios, Ignacio E. Grossmann BibTeX
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In silico cytotoxicity assessment on cultured rat intestinal cells deduced from cellular impedance measurements Toxicology in Vitro, Vol.41, pp. 179-188, 2017 (preprint available as ZIB-Report 17-08) Pooja Gupta, Annika Gramatke, Ralf Einspanier, Christof Schütte, Max von Kleist, Jutta Sharbati PDF (ZIB-Report)
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Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials Expert Review of Anti-infective Therapy, 15(6), pp. 545-568, 2017 Barbara Rath, Tim Conrad, Puja Myles, Maren Alchikh, Xiaolin Ma, Christian Hoppe, Franziska Tief, Xi Chen, Patrick Obermeier, Bron Kisler, Brunhilde Schweiger BibTeX
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Integrating LP-guided variable fixing with MIP heuristics in the robust design of hybrid wired-wireless FTTx access networks Applied Soft Computing, Vol.61, pp. 1074-1087, 2017 Fabio D'Andreagiovanni, Fabian Mett, Antonella Nardin, Jonad Pulaj BibTeX
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Line Planning on Path Networks with Application to the Istanbul Metrobüs Operations Research Proceedings 2016, pp. 235-241, 2017 (preprint available as ) Ralf Borndörfer, Oytun Arslan, Ziena Elijazyfer, Hakan Güler, Malte Renken, Guvenc Sahin, Thomas Schlechte BibTeX
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Mathematical Optimization of Rolling Stock Rotations Doctoral thesis, Technische Universität Berlin, Ralf Borndörfer, Martin Grötschel (Advisors), 2017 Markus Reuther BibTeX
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Multi-Level Lookahead Branching Master's thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2017 Christoph Schubert BibTeX
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Multiobjective Optimal Design of a Gas Turbine Cogeneration Plant by a Revised Hierarchical Optimization Method ASME Turbo Expo 2017: Turbomachinery Technical Conference and Exposition, pp. 1-14, Vol.3, 2017 Ryohei Yokoyama, Yuji Shinano, Yuki Wakayama, Tetsuya Wakui BibTeX
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Optimisation Methods in Sustainable Manufacturing Sustainable Manufacturing, Rainer Stark, Günther Seliger, Jérémy Bonvoisin (Eds.), Springer International Publishing, pp. 239-253, 2017, ISBN: 978-3-319-48514-0 Sebastian Schenker, Ingmar Vierhaus, Ralf Borndörfer, Armin Fügenschuh, Martin Skutella BibTeX
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Pattern Detection For Large-Scale Railway Timetables Proceedings of the IAROR conference RailLille, 2017 (preprint available as ZIB-Report 17-17) Stanley Schade, Ralf Borndörfer, Matthias Breuer, Boris Grimm, Markus Reuther, Thomas Schlechte, Patrick Siebeneicher PDF (ZIB-Report)
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Perfect f-Matchings and f-Factors in Hypergraphs - A Combinatorial Approach Discrete Mathematics, 340(10), pp. 2499-2506, 2017 (preprint available as ZIB-Report 16-22) Isabel Beckenbach, Robert Scheidweiler PDF (ZIB-Report)
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Polyhedral 3D Models for compressors in gas networks ZIB-Report 17-66 Tom Walther, Benjamin Hiller, René Saitenmacher PDF
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Recent success stories on integrated optimization of railway systems Transportation Research Part C: Emerging Technologies, 74(1), pp. 196-211, 2017 Ralf Borndörfer, Torsten Klug, Leonardo Lamorgese, Carlo Mannino, Markus Reuther, Thomas Schlechte BibTeX
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Role of bone morphogenetic proteins in sprouting angiogenesis: differential BMP receptor-dependent signaling pathways balance stalk vs. tip cell competence FASEB Journal, 31(11), pp. 4720-4733, 2017 Andreas Benn, Christian Hiepen, Marc Osterland, Christof Schütte, An Zwijsen, Petra Knaus BibTeX
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SCIP-Jack – A solver for STP and variants with parallelization extensions Mathematical Programming Computation, 9(2), pp. 231-296, 2017 (preprint available as ZIB-Report 16-41) Gerald Gamrath, Thorsten Koch, Stephen J. Maher, Daniel Rehfeldt, Yuji Shinano PDF (ZIB-Report)
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Shape-aware Surface Reconstruction from Sparse 3D Point-Clouds Medical Image Analysis, Vol.38, pp. 77-89, 2017 Florian Bernard, Luis Salamanca, Johan Thunberg, Alexander Tack, Dennis Jentsch, Hans Lamecker, Stefan Zachow, Frank Hertel, Jorge Goncalves, Peter Gemmar PDF
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Simulation, Identification and Statistical Variation in Cardiovascular Analysis (SISCA) - a Software Framework for Multi-compartment Lumped Modeling Computers in Biology and Medicine, Vol.87, pp. 104-123, 2017 Rudolf Huttary, Leonid Goubergrits, Christof Schütte, Stefan Bernhard BibTeX
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Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data BMC Bioinfomatics, 18(160), 2017 Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Benedikt Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte BibTeX
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Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data BMC Bioinformatics, 18(160), pp. 1-20, 2017 Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Jan Vybiral, Gitta Kutyniok, Christof Schütte BibTeX
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Strong Relaxations for the Train Timetabling Problem using Connected Configurations 17th Workshop on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2017), Gianlorenzo D'Angelo, Twan Dollevoet (Eds.), Vol.59, 2017, ISBN: 978-3-95977-042-2 (preprint available as ZIB-Report 17-46) Frank Fischer, Thomas Schlechte PDF
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Sufficient pruning conditions for MINLP in gas network design EURO Journal on Computational Optimization, 5(1-2), pp. 239-261, 2017 (preprint available as ZIB-Report 15-04) Jesco Humpola, Felipe Serrano PDF (ZIB-Report)
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Template-based Re-optimization of Rolling Stock Rotations Public Transport, pp. 1-19, 2017 Ralf Borndörfer, Boris Grimm, Markus Reuther, Thomas Schlechte BibTeX
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The SCIP Optimization Suite 4.0 ZIB-Report 17-12 Stephen J. Maher, Tobias Fischer, Tristan Gally, Gerald Gamrath, Ambros Gleixner, Robert Lion Gottwald, Gregor Hendel, Thorsten Koch, Marco Lübbecke, Matthias Miltenberger, Benjamin Müller, Marc Pfetsch, Christian Puchert, Daniel Rehfeldt, Sebastian Schenker, Robert Schwarz, Felipe Serrano, Yuji Shinano, Dieter Weninger, Jonas T. Witt, Jakob Witzig PDF
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The SCIP Optimization Suite 5.0 ZIB-Report 17-61 Ambros Gleixner, Leon Eifler, Tristan Gally, Gerald Gamrath, Patrick Gemander, Robert Lion Gottwald, Gregor Hendel, Christopher Hojny, Thorsten Koch, Matthias Miltenberger, Benjamin Müller, Marc Pfetsch, Christian Puchert, Daniel Rehfeldt, Franziska Schlösser, Felipe Serrano, Yuji Shinano, Jan Merlin Viernickel, Stefan Vigerske, Dieter Weninger, Jonas T. Witt, Jakob Witzig PDF
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The ZIMPL modeling language Optima, Vol.103, pp. 8-9, 2017 Thorsten Koch BibTeX
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Three Enhancements for Optimization-Based Bound Tightening Journal of Global Optimization, 67(4), pp. 731-757, 2017 (preprint available as ZIB-Report 15-16) Ambros Gleixner, Timo Berthold, Benjamin Müller, Stefan Weltge PDF (ZIB-Report)
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Umsteigen ohne Warten HEUREKA 2017, 2017 (epub ahead of print, preprint available as ) Ralf Borndörfer, Heide Hoppmann, Marika Karbstein BibTeX
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Using white-box nonlinear optimization methods in system dynamics policy improvement System Dynamics Review, 33(2), pp. 138-168, 2017 Ingmar Vierhaus, Armin Fügenschuh, Robert Lion Gottwald, Stefan Grösser BibTeX
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Validation of three-dimensional models of the distal femur created from surgical navigation point cloud data for intraoperative and postoperative analysis of total knee arthroplasty International Journal of Computer Assisted Radiology and Surgery, 12(12), pp. 2097-2105, 2017 David Wilson, Carolyn Anglin, Felix Ambellan, Carl Martin Grewe, Alexander Tack, Hans Lamecker, Michael Dunbar, Stefan Zachow PDF
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Verifying Integer Programming Results F. Eisenbrand and J. Koenemann, eds., Integer Programming and Combinatorial Optimization: 19th International Conference, IPCO 2017, pp. 148-160, Vol.10328, LNCS, 2017 (preprint available as ZIB-Report 16-58) Kevin K. H. Cheung, Ambros Gleixner, Daniel Steffy PDF (ZIB-Report)
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swMATH - Challenges, Next Steps, and Outlook CICM-WS-WIP 2016, Workshop and Work in Progress Papers at CICM 2016, Vol.Vol-1785, pp. 107-116, 2017 Hagen Chrapary, Wolfgang Dalitz, Wolfram Sperber PDF
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2016
A First Implementation of ParaXpress: Combining Internal and External Parallelization to Solve MIPs on Supercomputers Mathematical Software - ICMS 2016, 5th International Conference Berlin, Germany, July 11-14, 2016 Proceedings, pp. 308-316, 2016 Yuji Shinano, Timo Berthold, Stefan Heinz BibTeX
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A novel partitioning of the set of non-dominated points ZIB-Report 16-55 Sebastian Schenker, Ralf Borndörfer, Martin Skutella PDF
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Abschätzung der Suchbaumgröße und Laufzeit für Branch-and-Bound Algorithmen Bachelor's thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2016 Jan Merlin Viernickel BibTeX
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Acfs: accurate circRNA identification and quantification from NGS data Nature Scientific Reports, Vol.6, 2016 Tim Conrad, Xintian You BibTeX
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An Approximation Result for Matchings in Partitioned Hypergraphs Operations Research Proceedings 2014, pp. 31-36, 2016 (preprint available as ZIB-Report 14-30) Isabel Beckenbach, Ralf Borndörfer PDF (ZIB-Report)
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An inception cohort study assessing the role of bacterial co-infections in children with influenza and ILI and a clinical decision model for stringent antibiotic use Antiviral Therapy, Vol.21, pp. 413-424, 2016 Franziska Tief, Christian Hoppe, L. Seeber, Patrick Obermeier, X. Chen, K. Karsch, S. Muehlhans, E. Adamou, Tim Conrad, Brunhilde Schweiger, T. Adam, Barbara Rath BibTeX
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Cutting Planes for Families Implying Frankl's Conjecture ZIB-Report 16-51 Jonad Pulaj PDF
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Enabling Precision Medicine With Digital Case Classification at the Point-of-Care EBioMedicine, Vol.4, pp. 191-196, 2016 Patrick Obermeier, S. Muehlhans, Christian Hoppe, K. Karsch, Franziska Tief, L. Seeber, X. Chen, Tim Conrad, Sindy Boettcher, S. Diedrich, Barbara Rath BibTeX
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Epithelial Mesenchymal Transition Regulatory Network-based Feature Selection in Lung Cancer Prognosis Prediction Lecture Notes in Computer Science (LNCS), pp. 1235-146, Vol.9656, 2016 Borong Shao, Tim Conrad BibTeX
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Evaluation of Performance Robustness of a Gas Turbine Cogeneration Plant Based on a Mixed-Integer Linear Model ASME Turbo Expo 2016: Turbomachinery Technical Conference and Exposition, pp. 1-9, Vol.3, ASME Turbo Expo 2016: Turbomachinery Technical Conference and Exposition, 2016 Ryohei Yokoyama, Ryo Nakamura, Tetsuya Wakui, Yuji Shinano BibTeX
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Experiments with Concurrency and Heuristics in SCIP Master's thesis, Freie Universität Berlin, Thorsten Koch (Advisor), 2016 Robert Lion Gottwald BibTeX
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Exploiting Solving Phases for Mixed-Integer Programs Operations Research Proceedings 2015, pp. 3-9, 2016 (preprint available as ZIB-Report 15-64) Gregor Hendel PDF (ZIB-Report)
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Finding dominant structures of nonreversible Markov processes Multiscale Modeling and Simulation, 14(4), pp. 1319-1340, 2016 (preprint available as ) Natasa Djurdjevac Conrad, Marcus Weber, Christof Schütte BibTeX
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Finding metastable states in real-world time series with recurrence networks Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016 Iliusi Vega, Christof Schütte, Tim Conrad BibTeX
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Formulations and algorithms for the USCCSP Bachelor's thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2016 Ansgar Roessig BibTeX
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Innovative Digital Tools and Surveillance Systems for the Timely Detection of Adverse Events at the Point of Care: A Proof-of-Concept Study Drug Safety, 39(10), pp. 977-988, 2016 Christian Hoppe, Patrick Obermeier, S. Mehlhans, Maren Alchikh, L. Seeber, Franziska Tief, K. Karsch, X. Chen, Sindy Boettcher, S. Diedrich, Tim Conrad BibTeX
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Integrated Optimization of Rolling Stock Rotations for Intercity Railways Transportation Science, 50(3), pp. 863-877, 2016 (preprint available as ZIB-Report 12-39) Ralf Borndörfer, Markus Reuther, Thomas Schlechte, Kerstin Waas, Steffen Weider PDF
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Iterative Refinement for Linear Programming INFORMS Journal on Computing, 28(3), pp. 449-464, 2016 (preprint available as ZIB-Report 15-15) Ambros Gleixner, Daniel Steffy, Kati Wolter PDF (ZIB-Report)
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Joint Geometric Graph Embedding for Partial Shape Matching in Images IEEE Winter Conference on Applications of Computer Vision, pp. 1-9, IEEE, IEEE Winter Conference on Applications of Computer Vision (WACV), 2016 Anirban Mukhopadhyay, Arun Kumar, Suchendra Bhandarkar BibTeX
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Mathematical Software - ICMS 2016, 5th Int. Conf. Berlin, Germany, July 11-14, 2016, Proceedings Lecture Notes in Computer Science (LNCS), Vol.9725, Springer, 2016, ISBN: 978-3-319-42431-6 Martin Greuel, Thorsten Koch, Peter Paule, Andrew Sommese BibTeX
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Methoden zur Reduktion der Rechenzeit linearer Optimierungsmodelle in der Energiewirtschaft - Eine Performance-Analyse EnInnov 2016: 14. Symposium Energieinnovation 2016, 2016 Karl-Kiên Cao, Ambros Gleixner, Matthias Miltenberger PDF
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On Markov state models for non-equilibrium molecular dynamics The Journal of Chemical Physics, 145(174103), 2016 (preprint available as ZIB-Report 16-11) Peter Koltai, Giovanni Ciccotti, Christof Schütte PDF (ZIB-Report)
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On the numerical approximation of the Perron-Frobenius and Koopman operator Journal of Computational Dynamics, 3(1), pp. 51-77, 2016 Stefan Klus, Peter Koltai, Christof Schütte BibTeX
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Optimal Looping of Pipelines in Gas Networks ZIB-Report 16-67 Ralf Lenz, Robert Schwarz PDF
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Parallelization of the FICO Xpress-Optimizer Mathematical Software - ICMS 2016, 5th International Conference Berlin, Germany, July 11-14, 2016 Proceedings, pp. 251-258, 2016 Timo Berthold, James Farmer, Stefan Heinz, Michael Perregaard BibTeX
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PolySCIP Mathematical Software – ICMS 2016, 5th International Conference, Berlin, Germany, July 11-14, 2016, Proceedings, G.-M. Greuel, Thorsten Koch, Peter Paule, Andrew Sommese (Eds.), pp. 259-264, Vol.9725, Lecture Notes in Computer Science, 2016, ISBN: 978-3-319-42431-6 Ralf Borndörfer, Sebastian Schenker, Martin Skutella, Timo Strunk BibTeX
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PySCIPOpt: Mathematical Programming in Python with the SCIP Optimization Suite Mathematical Software – ICMS 2016, pp. 301-307, Vol.9725, Lecture Notes in Computer Science, 2016 (preprint available as ZIB-Report 16-64) Stephen J. Maher, Matthias Miltenberger, João Pedro Pedroso, Daniel Rehfeldt, Robert Schwarz, Felipe Serrano PDF (ZIB-Report)
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Regularity patterns for rolling stock rotation optimization 8th International Conference on Applied Operational Research, Proceedings, pp. 28-32, Vol.8, Lecture Notes in Management Science, 2016 Boris Grimm, Ralf Borndörfer, Markus Reuther, Thomas Schlechte, Stanley Schade BibTeX
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Robust and Accurate Appearance Models Based on Joint Dictionary Learning Data from the Osteoarthritis Initiative Lecture Notes in Computer Science, Patch-Based Techniques in Medical Imaging. Patch-MI 2016, pp. 25-33, Vol.9993, 2016 Anirban Mukhopadhyay, Oscar Morillo, Stefan Zachow, Hans Lamecker BibTeX
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Solving Open MIP Instances with ParaSCIP on Supercomputers using up to 80,000 Cores Proc. of 30th IEEE International Parallel & Distributed Processing Symposium, 2016 (preprint available as ZIB-Report 15-53) Yuji Shinano, Tobias Achterberg, Timo Berthold, Stefan Heinz, Thorsten Koch, Michael Winkler PDF (ZIB-Report)
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Solving Time Dependent Shortest Path Problems on Airway Networks Using Super-Optimal Wind 16th Workshop on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2016), Goerigk Marc (Ed.), Vol.54, OpenAccess Series in Informatics (OASIcs), 2016 Marco Blanco, Ralf Borndörfer, Nam-Dung Hoang, Anton Kaier, Adam Schienle, Thomas Schlechte, Swen Schlobach BibTeX
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Solving the integrated airline recovery problem using column-and-row generation Transportation Science, 50(1), pp. 216-239, 2016 Stephen J. Maher BibTeX
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Solving the master equation without kinetic Monte Carlo: Tensor train approximations for a CO oxidation model Journal of Computational Physics, Vol.314, pp. 489-502, 2016 Patrick Gelß, Sebastian Matera, Christof Schütte BibTeX
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Statistical Shape Modeling of Musculoskeletal Structures and Its Applications Computational Radiology for Orthopaedic Interventions, Springer, pp. 1-23, 2016, ISBN: 978-3-319-23481-6 Hans Lamecker, Stefan Zachow BibTeX
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The Cycle Embedding Problem Operations Research Proceedings 2014, pp. 465-472, 2016 (preprint available as ZIB-Report 14-37) Ralf Borndörfer, Marika Karbstein, Julika Mehrgahrdt, Markus Reuther, Thomas Schlechte PDF (ZIB-Report)
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The Freight Train Routing Problem for Congested Railway Networks with Mixed Traffic Transportation Science, 50(2), pp. 408-423, 2016 (in press, preprint available as ) Ralf Borndörfer, Armin Fügenschuh, Torsten Klug, Thilo Schang, Thomas Schlechte, Hanno Schülldorf BibTeX
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The Maximum Flow Problem for Oriented Flows 16th Workshop on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2016), Marc Goerigk, Renato Werneck (Eds.), pp. 1-13, Vol.54, OpenAccess Series in Informatics (OASIcs), 2016, ISBN: 978-3-95977-021-7 (epub ahead of print) Stanley Schade, Martin Strehler BibTeX
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The SCIP Optimization Suite 3.2 ZIB-Report 15-60 Gerald Gamrath, Tobias Fischer, Tristan Gally, Ambros Gleixner, Gregor Hendel, Thorsten Koch, Stephen J. Maher, Matthias Miltenberger, Benjamin Müller, Marc Pfetsch, Christian Puchert, Daniel Rehfeldt, Sebastian Schenker, Robert Schwarz, Felipe Serrano, Yuji Shinano, Stefan Vigerske, Dieter Weninger, Michael Winkler, Jonas T. Witt, Jakob Witzig PDF
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The Shortest Path Problem with Crossing Costs ZIB-Report 16-70 Marco Blanco, Ralf Borndörfer, Nam-Dung Hoang, Anton Kaier, Thomas Schlechte, Swen Schlobach PDF
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The Software Portal swMATH: A State of the Art Report and Next Steps Mathematical Software - ICMS 2016, 5th International Conference Berlin, Germany, July 11-14, 2016 Proceedings, pp. 397-402, 2016 Hagen Chrapary, Yue Ren BibTeX
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The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling Journal of Chemical Physics, 145(21), 2016 (preprint available as ) Stefanie Winkelmann, Christof Schütte PDF
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The unrooted set covering connected subgraph problem differentiating between HIV envelope sequences European Journal of Operational Research, 248(2), pp. 668-680, 2016 Stephen J. Maher, John M. Murray BibTeX
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Total Variation Random Forest: Fully automatic MRI segmentation in congenital heart disease RAMBO 2016, HVSMR 2016: Reconstruction, Segmentation, and Analysis of Medical Images, pp. 165-171, Vol.LNCS 10129, 2016 Anirban Mukhopadhyay BibTeX
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Towards an accurate solution of wireless network design problems Cerulli R., Fujishige S., Mahjoub A. (eds) Combinatorial Optimization. ISCO 2016, pp. 135-147, 2016 (preprint available as ZIB-Report 16-12) Fabio D'Andreagiovanni, Ambros Gleixner PDF (ZIB-Report)
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Towards tensor-based methods for the numerical approximation of the Perron-Frobenius and Koopman operator Journal of Computational Dynamics, 3(2), pp. 139-161, 2016 Stefan Klus, Christof Schütte BibTeX
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Valid inequalities for the topology optimization problem in gas network design OR Spectrum, 38(3), pp. 597-631, 2016 (preprint available as ZIB-Report 13-06) Jesco Humpola, Armin Fügenschuh, Thorsten Koch PDF (ZIB-Report)
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2015
A Generic Approach to Solving the Steiner Tree Problem and Variants Master's thesis, Technische Universität Berlin, Thorsten Koch (Advisor), 2015 Daniel Rehfeldt PDF
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A novel passenger recovery approach for the integrated airline recovery problem Computers & Operations Research, Vol.57, pp. 123-137, 2015 Stephen J. Maher BibTeX
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A primal heuristic for optimizing the topology of gas networks based on dual information EURO Journal on Computational Optimization, 3(1), pp. 53-78, 2015 (preprint available as ZIB-Report 13-49) Jesco Humpola, Thomas Lehmann, Armin Fügenschuh PDF (ZIB-Report)
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Are NoSQL data stores useful for bioinformatics researchers? International Journal on Recent and Innovation Trends in Computing and Communication (IJRITCC), 3(3), pp. 1704-1708, 2015 Tim Conrad, Borong Shao BibTeX
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Branching on Multi-aggregated Variables Integration of AI and OR Techniques in Constraint Programming. CPAIOR 2015, pp. 141-156, Vol.9075, Lecture Notes in Computer Science, 2015 (preprint available as ZIB-Report 15-10) Gerald Gamrath, Anna Melchiori, Timo Berthold, Ambros Gleixner, Domenico Salvagnin PDF (ZIB-Report)
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Comparing two dual relaxations of large scale train timetabling problems Proceedings of Conference on Advanced Systems in Public Transport 2015, 2015 (preprint available as ZIB-Report 15-43) Frank Fischer, Thomas Schlechte PDF (ZIB-Report)
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Computational results for validation of nominations Evaluating Gas Network Capacities, 2015, ISBN: 9781611973686 Benjamin Hiller, Jesco Humpola, Thomas Lehmann, Ralf Lenz, Antonio Morsi, Marc Pfetsch, Lars Schewe, Martin Schmidt, Robert Schwarz, Jonas Schweiger, Claudia Stangl, Bernhard Willert BibTeX
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Convex reformulations for solving a nonlinear network design problem Computational Optimization and Applications, 62(3), pp. 717-759, 2015 (preprint available as ZIB-Report 13-31) Jesco Humpola, Armin Fügenschuh PDF (ZIB-Report)
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Data-Driven Feature Learning for Myocardial Segmentation of CP-BOLD MRI Functional Imaging and Modeling of the Heart, pp. 189-197, Vol.9126, Lecture Notes in Computer Science, 2015 Anirban Mukhopadhyay, Ilkay Oksuz, Marco Bevilacqua, Rohan Dharmakumar, Sotirios Tsaftaris BibTeX
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Dictionary Learning Based Image Descriptor for Myocardial Registration of CP-BOLD MR Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015, pp. 205-213, Vol.9350, Lecture Notes in Computer Science, 2015 Ilkay Oksuz, Anirban Mukhopadhyay, Marco Bevilacqua, Rohan Dharmakumar, Sotirios Tsaftaris BibTeX
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Duty Rostering in Public Transport - Facing Preferences, Fairness, and Fatigue Proceedings of Conference on Advanced Systems in Public Transport 2015 (CASPT2015), 2015 (preprint available as ZIB-Report 15-44) Ralf Borndörfer, Markus Reuther, Thomas Schlechte, Christof Schulz, Elmar Swarat, Steffen Weider PDF (ZIB-Report)
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Enhancing MIP Branching Decisions by Using the Sample Variance of Pseudo Costs Integration of AI and OR Techniques in Constraint Programming, pp. 199-214, Vol.9075, Lecture Notes in Computer Science, 2015 (preprint available as ZIB-Report 15-28) Gregor Hendel PDF (ZIB-Report)
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Evaluating Gas Network Capacities SIAM, 2015, ISBN: 978-1-611973-68-6 Thorsten Koch, Benjamin Hiller, Marc Pfetsch, Lars Schewe BibTeX
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Exact and Fast Algorithms for Mixed-Integer Nonlinear Programming Doctoral thesis, Technische Universität Berlin, Martin Grötschel, Thorsten Koch, Andrea Lodi (Advisors), 2015, ISBN: 978-3-8325-4190-3 Ambros Gleixner BibTeX
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Fastest, Average and Quantile Schedule SOFSEM 2015: Theory and Practice of Computer Science, pp. 201-216, 2015 (preprint available as ZIB-Report 14-49) Torsten Klug, Konstanty Junosza-Szaniawski, Slawomir Kwasiborski, Armin Fügenschuh, Thomas Schlechte PDF (ZIB-Report)
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G-RIPS 2014 RailLab - Towards robust rolling stock rotations ZIB-Report 14-34 Charles Brett, Rebecca Hoberg, Meritxell Pacheco, Kyle Smith, Ralf Borndörfer, Ricardo Euler, Gerwin Gamrath, Boris Grimm, Olga Heismann, Markus Reuther, Thomas Schlechte, Alexander Tesch PDF
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GasLib - A Library of Gas Network Instances Optimization Online, 2015 Jesco Humpola, Imke Joormann, Djamal Oucherif, Marc Pfetsch, Lars Schewe, Martin Schmidt, Robert Schwarz PDF
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Generation of multiple best solutions in multiobjective optimal design of energy supply systems Proceedings of the 15th International Conference on Power Engineering. ICOPE 2015, 2015 Ryohei Yokoyama, Yuji Shinano, Syusuke Taniguchi, Masashi Ohkura, Tetsuya Wakui BibTeX
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Human Parechovirus Infections Associated with Seizures and Rash: A Syndromic Surveillance Study in Children The Pediatric Infectious Disease Journal, 34(10), 2015 Tim Conrad, K. Karsch, Patrick Obermeier, L. Seeber, X. Chen, Franziska Tief, S. Muehlhans, Christian Hoppe, Sindy Boettcher, S. Diedrich, Barbara Rath BibTeX
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Integration of Duty Scheduling and Rostering to Increase Driver Satisfaction ZIB-Report 15-50 Ralf Borndörfer, Christof Schulz, Stephan Seidl, Steffen Weider PDF
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Introduction Evaluating Gas Network Capacities, Society for Industrial and Applied Mathematics, pp. 3-16, 2015, ISBN: 9781611973686 Thorsten Koch, Marc Pfetsch, Jessica Rövekamp BibTeX
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MILP Approaches to Optimal Design and Operation of Distributed Energy Systems Optimization in the Real World, Springer, pp. 157-176, 2015, ISBN: 978-4-431-55419-6 Ryohei Yokoyama, Yuji Shinano BibTeX
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Mathematical modeling and sensitivity analysis of arterial anastomosis in arm arteries ZIB-Report 15-22 Raheem Gul, Christof Schütte, Stefan Bernhard PDF
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Mathematical optimization for evaluating gas network capacities Evaluating Gas Network Capacities, Society for Industrial and Applied Mathematics, pp. 87-102, 2015, ISBN: 9781611973686 Lars Schewe, Thorsten Koch, Alexander Martin, Marc Pfetsch BibTeX
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Mathematische Modellierung, Simulation und Optimierung von Gastransportnetzwerken gwf - Gas+Energie, 156(11), pp. 880-885, 2015 Pia Domschke, Martin Groß, Falk M. Hante, Benjamin Hiller, Lars Schewe, Martin Schmidt BibTeX
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Methods for verifying booked capacities Evaluating gas network capacities, Society for Industrial and Applied Mathematics, pp. 291-315, 2015 Benjamin Hiller, Christine Hayn, Holger Heitsch, René Henrion, Hernan Leövey, Andris Möller, Werner Römisch BibTeX
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Minimum-overlap clusterings and the sparsity of overcomplete decompositions of binary matrics Procedia Computer Science, Vol.51, pp. 2967-2971, 2015 Tim Conrad, Victor Mireles BibTeX
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Modularity of Directed Networks: Cycle Decomposition Approach Journal of Computational Dynamics 2 (2015) pp. 1-24, 2015 (preprint available as ) Natasa Djurdjevac Conrad, Ralf Banisch, Christof Schütte BibTeX
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Optimal Treatment Strategies in the Context of 'Treatment for Prevention' against HIV/1 in Resource-Poor Settings PloS Computational Biology, 11(4), 2015 Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist BibTeX
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Optimization in the Real World Mathematics for Industry (MFI), Vol.13, Springer Tokyo Heidelberg New York Dordrecht London, 2015, ISBN: 978-4-431-55419-6 Katsuki Fujisawa, Yuji Shinano, Hayato Waki BibTeX
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Optimization of energy supply systems by MILP branch and bound method in consideration of hierarchical relationship between design and operation Energy Conversion and Management, Vol.92, pp. 92-104, 2015 (preprint available as ZIB-Report 14-09) Ryohei Yokoyama, Yuji Shinano, Syusuke Taniguchi, Masashi Ohkura, Tetsuya Wakui PDF (ZIB-Report)
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Perspectives Evaluating Gas Network Capacities, 2015, ISBN: 9781611973686 Christine Hayn, Jesco Humpola, Thorsten Koch, Lars Schewe, Jonas Schweiger, Klaus Spreckelsen BibTeX
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Pricing local emission exposure of road traffic: An agent-based approach Transportation Research Part D: Transport and Environment, Vol.37, pp. 14-28, 2015 Benjamin Kickhöfer, Julia Kern PDF
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