Die Abteilung Modeling and Simulation of Complex Processes entwickelt effiziente Modellierungs-, Simulations- und Optimierungswerkzeuge und -algorithmen für anspruchsvolle Anwendungsprobleme aus Medizin, Systembiologie und Molekulardynamik sowie Nano-Optik und Digital Humanities. Auf der Grundlage einer engen Zusammenarbeit mit Anwendungspartnern aus Industrie und Forschung zielt die Abteilung nicht nur auf die Generierung wissenschaftlicher Erkenntnisse ab, sondern erstellt auch Software-Prototypen und Demonstratoren für spezifische Lösungen. 

Dafür entwickeln wir adaptive Algorithmen in den Bereichen Finiter Elemente, agentenbasierte Modelle, Konformationsdynamik, stochastischer und hybrider Simulation, Optimalsteuerung und Parameterschätzung, wobei Multilevel-Strukturen für Effizienz und Robustheit genutzt werden. Mit zunehmender Anwendungskomplexität spielen Mehrskalen-, Multi-Physik- und Hybridmodelle eine immer wichtigere Rolle, genauso wie stochastische Effekte, Uncertainty Quantification, maschinelles Lernen und Experimentendesign.

Arbeitsgruppen

Software

KASKADE 7
Flexible C++ library for solving PDE systems with finite elements.
Contact: Martin Weiser (weiser@zib.de)

Publications

2024
A community effort in SARS-CoV-2 drug discovery Molecular Informatics, 43(1), p. e202300262, 2024 Johannes Schimunek, Philipp Seidl, Katarina Elez, Tim Hempel, Tuan Le, Frank Noé, Simon Olsson, Lluís Raich, Robin Winter, Hatice Gokcan, Filipp Gusev, Evgeny M. Gutkin, Olexandr Isayev, Maria G. Kurnikova, Chamali H. Narangoda, Roman Zubatyuk, Ivan P. Bosko, Konstantin V. Furs, Anna D. Karpenko, Yury V. Kornoushenko, Mikita Shuldau, Artsemi Yushkevich, Mohammed B. Benabderrahmane, Patrick Bousquet-Melou, Ronan Bureau, Beatrice Charton, Bertrand C. Cirou, Gérard Gil, William J. Allen, Suman Sirimulla, Stanley Watowich, Nick Antonopoulos, Nikolaos Epitropakis, Agamemnon Krasoulis, Vassilis Itsikalis, Stavros Theodorakis, Igor Kozlovskii, Anton Maliutin, Alexander Medvedev, Petr Popov, Mark Zaretckii, Hamid Eghbal-Zadeh, Christina Halmich, Sepp Hochreiter, Andreas Mayr, Peter Ruch, Michael Widrich, Francois Berenger, Ashutosh Kumar, Yoshihiro Yamanishi, Kam Y. J. Zhang, Emmanuel Bengio, Yoshua Bengio, Moksh J. Jain, Maksym Korablyov, Cheng-Hao Liu, Gilles Marcou, Enrico Glaab, Kelly Barnsley, Suhasini M. Iyengar, Mary Jo Ondrechen, V. Joachim Haupt, Florian Kaiser, Michael Schroeder, Luisa Pugliese, Simone Albani, Christina Athanasiou, Andrea Beccari, Paolo Carloni, Giulia D’Arrigo, Eleonora Gianquinto, Jonas Goßen, Anton Hanke, Benjamin P. Joseph, Daria B. Kokh, Sandra Kovachka, Candida Manelfi, Goutam Mukherjee, Abraham Muñiz-Chicharro, Francesco Musiani, Ariane Nunes-Alves, Giulia Paiardi, Giulia Rossetti, S. Kashif Sadiq, Francesca Spyrakis, Carmine Talarico, Alexandros Tsengenes, Rebecca C. Wade, Conner Copeland, Jeremiah Gaiser, Daniel R. Olson, Amitava Roy, Vishwesh Venkatraman, Travis J. Wheeler, Haribabu Arthanari, Klara Blaschitz, Marco Cespugli, Vedat Durmaz, Konstantin Fackeldey, Patrick D. Fischer, Christoph Gorgulla, Christian Gruber, Karl Gruber, Michael Hetmann, Jamie E. Kinney, Krishna M. Padmanabha Das, Shreya Pandita, Amit Singh, Georg Steinkellner, Guilhem Tesseyre, Gerhard Wagner, Zi-Fu Wang, Ryan J. Yust, Dmitry S. Druzhilovskiy, Dmitry A. Filimonov, Pavel V. Pogodin, Vladimir Poroikov, Anastassia V. Rudik, Leonid A. Stolbov, Alexander V. Veselovsky, Maria De Rosa, Giada De Simone, Maria R. Gulotta, Jessica Lombino, Nedra Mekni, Ugo Perricone, Arturo Casini, Amanda Embree, D. Benjamin Gordon, David Lei, Katelin Pratt, Christopher A. Voigt, Kuang-Yu Chen, Yves Jacob, Tim Krischuns, Pierre Lafaye, Agnès Zettor, M. Luis Rodríguez, Kris M. White, Daren Fearon, Frank Von Delft, Martin A. Walsh, Dragos Horvath, Charles L. Brooks III, Babak Falsafi, Bryan Ford, Adolfo García-Sastre, Sang Yup Lee, Nadia Naffakh, Alexandre Varnek, Günter Klambauer, Thomas M. Hermans BibTeX
DOI
Modeling and Simulation of Complex Processes
Altered knee kinematics after posterior cruciate single-bundle reconstruction - a comprehensive prospective biomechanical in vivo analysis Frontiers in Bioengineering and Biotechnology, Vol.12, 2024 Stephan Oehme, Philippe Moewis, Heide Boeth, Benjamin Bartek, Christoph von Tycowicz, Rainald Ehrig, Georg Duda, Tobias Jung PDF
BibTeX
DOI
Modeling and Simulation of Complex Processes
Bayesian optimization for state engineering of quantum gases arXiv, p. arXiv:2404.18234, 2024 Gabriel Müller, V. J. Martínez-Lahuerta, Ivan Sekuliĉ, Sven Burger, Philipp-Immanuel Schneider, Naceur Gaaloul BibTeX
arXiv
Modeling and Simulation of Complex Processes
Chiral and directional optical emission from a dipole source coupled to a helical plasmonic antenna arXiv, p. 2402.00664, 2024 Lilli Kuen, Lorenz Löffler, Aleksei Tsarapkin, Lin Zschiedrich, Thorsten Feichtner, Sven Burger, Katja Höflich BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Computing eigenfrequency sensitivities near exceptional points Phys. Rev. Research, Vol.6, p. 023148, 2024 Felix Binkowski, Julius Kullig, Fridtjof Betz, Lin Zschiedrich, Andrea Walther, Jan Wiersig, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Dynamical systems and complex networks: A Koopman operator perspective 2024 (under review) Stefan Klus, Natasa Djurdjevac Conrad BibTeX
arXiv
Modeling and Simulation of Complex Processes
Efficient rational approximation of optical response functions with the AAA algorithm arXiv, p. arXiv:2403.19404, 2024 Fridtjof Betz, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger, Felix Binkowski BibTeX
arXiv
Modeling and Simulation of Complex Processes
Electrograms in a Cardiac Cell-by-Cell Model 2024 (under review) Joshua Steyer, Fatemeh Chegini, Tomas Starý, Mark Potse, Martin Weiser, Axel Loewe BibTeX
Modeling and Simulation of Complex Processes
Excluded volume induces buckling in optically driven colloidal rings Phys. Rev. Research, Vol.6, p. L012044, 2024 Eric Cereceda-López, Mattia Ostinato, Antonio Ortiz-Ambriz, Arthur Straube, Matteo Palassini, Pietro Tierno BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Fabrication uncertainty aware and robust design optimization of a photonic crystal nanobeam cavity by using Gaussian processes J. Opt. Soc. Am. B, Vol.41, p. 850, 2024 Matthias Plock, Felix Binkowski, Lin Zschiedrich, Phillip-Immanuel Schneider, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Fiber-coupled solid-state-based single-photon sources Specialty Optical Fibers, pp. 345-384, Woodhead Publishing, 2024 Anna Musial, Grzegorz Sek, Philipp-Immanuel Schneider, Stephan Reitzenstein BibTeX
DOI
Modeling and Simulation of Complex Processes
Introduction and application of a new approach for model-based optical bidirectional measurements Meas. Sci. Technol., 2024 Jan Krüger, Phillip Manley, Detlef Bergmann, Rainer Köning, Bernd Bodermann, Christian Eder, Andreas Heinrich, Philipp-Immanuel Schneider, Martin Hammerschmidt, Lin Zschiedrich, Eberhard Manske BibTeX
DOI
Modeling and Simulation of Complex Processes
Koopman-Based Surrogate Models for Multi-Objective Optimization of Agent-Based Systems Physica D: Nonlinear Phenomena, Vol.460, p. 134052, 2024 Jan-Hendrik Niemann, Stefan Klus, Natasa Djurdjevac Conrad, Christof Schütte BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Learning interpretable collective variables for spreading processes on networks Physical Review E, Vol.2, p. L022301, 2024 Marvin Lücke, Stefanie Winkelmann, Jobst Heitzig, Nora Molkenthin, Péter Koltai BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Multi-grid reaction-diffusion master equation: applications to morphogen gradient modelling 2024 (under review) Radek Erban, Stefanie Winkelmann BibTeX
arXiv
Modeling and Simulation of Complex Processes
Multilevel Optimization for Policy Design with Agent-Based Epidemic Models Computational Science, Vol.77, p. 102242, 2024 Jan-Hendrik Niemann, Samuel Uram, Sarah Wolf, Natasa Djurdjevac Conrad, Martin Weiser BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Optimized Sensing on Gold Nanoparticles Created by Graded-Layer Magnetron Sputtering and Annealing 2024 Deshabrato Mukherjee, Krisztián Kertész, Zsolt Zolnai, Zoltán Kovács, András Deák, András Pálinkás, Zoltán Osváth, Dániel Olasz, Alekszej Romanenko, Miklós Fried, Sven Burger, György Sáfrán, Peter Petrik BibTeX
DOI
Modeling and Simulation of Complex Processes
Partial mean-field model for neurotransmission dynamics Mathematical Biosciences, Vol.369, 2024 Alberto Montefusco, Luzie Helfmann, Toluwani Okunola, Stefanie Winkelmann, Christof Schütte BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Poles and zeros in non-Hermitian systems: Application to photonics Phys. Rev. B, Vol.109, p. 045414, 2024 Felix Binkowski, Fridtjof Betz, Remi Colom, Patrice Genevet, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Research data for "Fabrication uncertainty guided design optimization of a photonic crystal cavity by using Gaussian processes" Zenodo, p. doi: 10.5281/zenodo.8131611, 2024 Matthias Plock, Felix Binkowski, Lin Zschiedrich, Phillip-Immanuel Schneider, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Review and experimental benchmarking of machine learning algorithms for efficient optimization of cold atom experiments Mach. Learn. Sci. Technol., Vol.5, p. 025022, 2024 Oliver Anton, Victoria A. Henderson, Elisa Da Ros, Ivan Sekuliĉ, Sven Burger, Philipp-Immanuel Schneider, Markus Krutzik BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Sawfish Photonic Crystal Cavity for Near-Unity Emitter-to-Fiber Interfacing in Quantum Network Applications Adv. Opt. Mater., Vol.12, p. 2301286, 2024 Julian M. Bopp, Matthias Plock, Tim Turan, Gregor Pieplow, Sven Burger, Tim Schröder BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Source Code and Simulation Results: Chiral and directional optical emission from a dipole source coupled to a helical plasmonic antenna Zenodo, p. doi: 10.5281/zenodo.10598255, 2024 Lilli Kuen, Lorenz Löffler, Aleksei Tsarapkin, Lin Zschiedrich, Thorsten Feichtner, Sven Burger, Katja Höflich BibTeX
DOI
Modeling and Simulation of Complex Processes
Source code and simulation results: Computing eigenfrequency sensitivities near exceptional points Zenodo, p. doi: 10.5281/zenodo.10715639, 2024 Felix Binkowski, Julius Kullig, Fridtjof Betz, Lin Zschiedrich, Andrea Walther, Jan Wiersig, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Source code and simulation results: Efficient rational approximation of optical response functions with the AAA algorithm Zenodo, p. doi: 10.5281/zenodo.10853692, 2024 Fridtjof Betz, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger, Felix Binkowski BibTeX
DOI
Modeling and Simulation of Complex Processes
Synchronization and random attractors in reaction jump processes Journal of Dynamics and Differential Equations, 2024 Maximilian Engel, Guillermo Olicón-Méndez, Nathalie Wehlitz, Stefanie Winkelmann BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Understanding Memory Mechanisms in in Socio-Technical Systems: the Case of an Agent-based Mobility Model Advances in Complex Systems, 2024 (accepted for publication) Gesine Steudle, Stefanie Winkelmann, Steffen Fürst, Sarah Wolf BibTeX
DOI
Modeling and Simulation of Complex Processes
Version 2 — RPExpand: Software for Riesz projection expansion of resonance phenomena SoftwareX, Vol.26, p. 101694, 2024 Fridtjof Betz, Felix Binkowski, Lilli Kuen, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
‘Sawfish’ Photonic Crystal Cavity for Near-Unity Emitter-to-Fiber Interfacing in Quantum Network Applications (Advanced Optical Materials 13/2024) Adv. Optical Mater., Vol.12, p. 2470046, 2024 Julian M. Bopp, Matthias Plock, Tim Turan, Gregor Pieplow, Sven Burger, Tim Schröder BibTeX
DOI
Modeling and Simulation of Complex Processes
2023
A Mathematical perspective on Romanisation: Modelling the Roman road activation process in ancient Tunisia 2023 (under review) Natasa Djurdjevac Conrad, Robin Chemnitz, Margarita Kostre, Fleur Schweigart, Friederike Fless, Christof Schütte, Benjamin Ducke BibTeX
Modeling and Simulation of Complex Processes
A route to the hydrodynamic limit of a reaction-diffusion master equation using gradient structures SIAM Journal on Applied Mathematics, 83(2), pp. 837-861, 2023 Alberto Montefusco, Christof Schütte, Stefanie Winkelmann BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
AI-guided pipeline for protein-protein interaction drug discovery identifies a SARS-CoV-2 inhibitor bioRxiv, 2023 Philipp Trepte, Christopher Secker, Simona Kostova, Sibusiso B. Maseko, Soon Gang Choi, Jeremy Blavier, Igor Minia, Eduardo Silva Ramos, Patricia Cassonnet, Sabrina Golusik, Martina Zenkner, Stephanie Beetz, Mara J. Liebich, Nadine Scharek, Anja Schütz, Marcel Sperling, Michael Lisurek, Yang Wang, Kerstin Spirohn, Tong Hao, Michael A. Calderwood, David E. Hill, Markus Landthaler, Julien Olivet, Jean-Claude Twizere, Marc Vidal, Erich E. Wanker PDF
BibTeX
DOI
Modeling and Simulation of Complex Processes
Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles The Journal of Physical Chemistry B, 127(13), pp. 2955-2967, 2023 (preprint available as ZIB-Report 22-21) Arthur Straube, Stefanie Winkelmann, Felix Höfling PDF (ZIB-Report)
BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Adaptive Gaussian Process Regression for Efficient Building of Surrogate Models in Inverse Problems Inverse Problems, 39(12), p. 125003, 2023 Phillip Semler, Martin Weiser BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Applying a Riesz-projection-based contour integral eigenvalue solver to compute resonance modes of a VCSEL Proc. SPIE, p. 125750J, Vol.12575, 2023 Lilli Kuen, Fridtjof Betz, Felix Binkowski, Philipp-Immanuel Schneider, Martin Hammerschmidt, Niels Heermeier, Sven Rodt, Stephan Reitzenstein, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Asymmetric phase modulation with light with parity-symmetry broken metasurfaces Optica, Vol.10, p. 1287, 2023 Elena Mikheeva, Rémi Colom, Karim Achouri, Adam Overvig, Felix Binkowski, Jean-Yves Duboz, Sébastien Cueff, Shanhui Fan, Sven Burger, Andrea Alù, Patrice Genevet BibTeX
DOI
Modeling and Simulation of Complex Processes
Chemical diffusion master equation: formulations of reaction-diffusion processes on the molecular level Journal of Mathematical Physics, 64(1), 2023 Mauricio del Razo, Stefanie Winkelmann, Rupert Klein, Felix Höfling BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Comparative Optical Analysis of Imprinted Nano-, Micro- and Biotextures on Solar Glasses for Increased Energy Yield Solar RRL, Vol.7, p. 2300071, 2023 Danbi Yoo, Peter Tillmann, Tobias Krauss, Johannes Sutter, Angelika Harter, Sergei Trofimov, Boris Naydenov, Klaus Jäger, Hubert Hauser, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Cover Picture: Resonance Expansion of Quadratic Quantities with Regularized Quasinormal Modes Phys. Status Solidi A, Vol.220, p. 2370013, 2023 Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Crossing of the Branch Cut: The Topological Origin of a Universal 2π-Phase Retardation in Non-Hermitian Metasurfaces (Laser Photonics Rev. 17(6)/2023) Laser Photonics Rev., Vol.17, p. 2370029, 2023 Rémi Colom, Elena Mikheeva, Karim Achouri, Jesus Zuniga-Perez, Nicolas Bonod, Olivier J.F. Martin, Sven Burger, Patrice Genevet BibTeX
DOI
Modeling and Simulation of Complex Processes
Crossing of the branch cut: the topological origin of a universal 2π-phase retardation in non-Hermitian metasurfaces Laser Photonics Rev., Vol.17, p. 2200976, 2023 Remi Colom, Elena Mikheeva, Karim Achouri, Jesus Zuniga-Perez, Nicolas Bonod, Olivier J. F. Martin, Sven Burger, Patrice Genevet BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Depinning transition of self-propelled particles 2023 (under review) Arthur Straube, Felix Höfling BibTeX
arXiv
Modeling and Simulation of Complex Processes
Derivation of the Transient and Steady Optical States from the Poles of the S-Matrix Laser Photon. Rev., Vol.17, p. 2200141, 2023 Isam Ben Soltane, Rémi Colom, Brian Stout, Nicolas Bonod BibTeX
DOI
Modeling and Simulation of Complex Processes
Efficient Time-Stepping for Numerical Integration Using Reinforcement Learning SIAM Journal on Scientific Computing, 45(2), pp. A579-A595, 2023 Michael Dellnitz, Eyke Hüllermeier, Marvin Lücke, Sina Ober-Blöbaum, Christian Offen, Sebastian Peitz, Karlson Pfannschmidt BibTeX
DOI
Modeling and Simulation of Complex Processes
Efficient machine-learning approach to optimize trapped cold atom ensembles for quantum memory applications Proc. SPIE, p. 127400F, Vol.12740, 2023 Ivan Sekuliĉ, Philipp-Immanuel Schneider, Oliver Anton, Elisa Da Ros, Victoria Henderson, Markus Krutzik BibTeX
DOI
Modeling and Simulation of Complex Processes
Efficient numerical methods for simulating cardiac electrophysiology with cellular resolution 10th Int. Conf. Computational Methods for Coupled Problems in Science and Engineering 2023, 2023 Fatemeh Chegini, Algiane Froehly, Ngoc Mai Monica Huynh, Luca Pavarino, Mark Potse, Simone Scacchi, Martin Weiser BibTeX
DOI
Modeling and Simulation of Complex Processes
Efficient reconstruction of model parameters using Bayesian target-vector optimization Proc. SPIE, p. PC1261905, Vol.PC12619, 2023 Matthias Plock, Sven Burger, Philipp-Immanuel Schneider BibTeX
DOI
Modeling and Simulation of Complex Processes
Fast Floating-Point Filters for Robust Predicates BIT Numerical Mathematics, Vol.63, 2023 Tinko Bartels, Vissarion Fisikopoulos, Martin Weiser BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Forward simulation of coherent beams on grating structures for coherent scatterometry Proc. SPIE, p. PC1261907, Vol.PC12619, 2023 Martin Hammerschmidt, Lin Zschiedrich, Lauryna Siaudinyté, Phillip Manley, Philipp-Immanuel Schneider, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
High-performance designs for fiber-pigtailed quantum-light sources based on quantum dots in electrically-controlled circular Bragg gratings Opt. Express, Vol.31, p. 14750, 2023 Lucas Rickert, Fridtjof Betz, Matthias Plock, Sven Burger, Tobias Heindel BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Insights into drivers of mobility and cultural dynamics of African hunter-gatherers over the past 120 000 years Royal Society Open Science, 10(11), 2023 Johannes Zonker, Cecilia Padilla-Iglesias, Natasa Djurdjevac Conrad BibTeX
DOI
Modeling and Simulation of Complex Processes
Large population limits of Markov processes on random networks Stochastic Processes and their Applications, Vol.166, 2023 Marvin Lücke, Jobst Heitzig, Péter Koltai, Nora Molkethin, Stefanie Winkelmann BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Model reduction for calcium-induced vesicle fusion dynamics Proceedings in Applied Mathematics & Mechanics, 23(4), 2023 Ariane Ernst, Undine Falkenhagen, Stefanie Winkelmann BibTeX
DOI
Modeling and Simulation of Complex Processes
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design Scientific Reports, 13(607), 2023 Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann BibTeX
DOI
Modeling and Simulation of Complex Processes
Modelling opinion dynamics under the impact of influencer and media strategies Scientific Reports, Vol.13, p. 19375, 2023 Luzie Helfmann, Natasa Djurdjevac Conrad, Philipp Lorenz-Spreen, Christof Schütte BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Nanostructures for in-situ surface-enhanced Kretschmann-Raether ellipsometry Proc. SPIE, p. 124280S, Vol.12428, 2023 Deshabrato Mukherjee, Benjámin Kalas, Sven Burger, György Sáfrán, Miklós Serényi, Miklós Fried, Péter Petrik BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Novel multi-objective affinity approach allows to identify pH-specific μ-opioid receptor agonists Journal of Cheminformatics, Vol.15, 2023 Christopher Secker, Konstantin Fackeldey, Marcus Weber, Sourav Ray, Christoph Gorgulla, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
On the Accuracy of Eikonal Approximations in Cardiac Electrophysiology in the Presence of Fibrosis Functional Imaging and Modeling of the Heart. FIMH 2023., Vol.13958, Lecture Notes in Computer Science, 2023 Lia Gander, Rolf Krause, Martin Weiser, Francisco Costabal, Simone Pezzuto BibTeX
DOI
Modeling and Simulation of Complex Processes
Optimizing bifacial tandem solar cells for realistic operation conditions Doctoral thesis, Freie Universität Berlin, Christof Schütte, Christiane Becker (Advisors), 2023 Peter Tillmann BibTeX
DOI
Modeling and Simulation of Complex Processes
RPExpand (Version 1) Zenodo, p. doi: 10.5281/zenodo.7840116, 2023 Fridtjof Betz, Felix Binkowski, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
RPExpand (Version 2.0) Zenodo, p. doi: 10.5281/zenodo.10371002, 2023 Fridtjof Betz, Felix Binkowski, Sven Burger, Lilli Kuen BibTeX
DOI
Modeling and Simulation of Complex Processes
Rate-limiting recovery processes in neurotransmission under sustained stimulation Mathematical Biosciences, Vol.362, 2023 Ariane Ernst, Nathalie Unger, Christof Schütte, Alexander Walter, Stefanie Winkelmann BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Resonance expansion of quadratic quantities with regularized quasinormal modes Phys. Status Solidi A, Vol.220, p. 2200892, 2023 Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Riesz-projection-based methods for the numerical simulation of resonance phenomena in nanophotonics Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2023 Felix Binkowski BibTeX
DOI
Modeling and Simulation of Complex Processes
Sampling-Dependent Transition Paths of Iceland-Scotland Overflow Water Journal of Physical Oceanography, 53(4), pp. 1151-1160, 2023 Francisco Javier Beron-Vera, Maria Josefina Olascoaga, Luzie Helfmann, Philippe Miron BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Source code and simulation results: Poles and zeros of electromagnetic quantities in photonic systems Zenodo, p. 8063931, 2023 Felix Binkowski, Fridtjof Betz, Remi Colom, Patrice Genevet, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Supplementary code and data for Royal Society Open Science Manuscript rsos.230495 2023 Johannes Zonker, Cecilia Padilla-Iglesias, Natasa Djurdjevac Conrad BibTeX
DOI
Modeling and Simulation of Complex Processes
Supplementary code for the paper Modelling opinion dynamics under the impact of influencer and media strategies 2023 Luzie Helfmann, Natasa Djurdjevac Conrad, Philipp Lorenz-Spreen, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
The Decision Theatre Triangle for societal challenges – an example case and research needs Journal of Cleaner Production, Vol.394, p. 136299, 2023 Sarah Wolf, Steffen Fürst, Andreas Geiges, Manfred Laublichler, Jahel Mielke, Gesine Steudle, Konstantin Winter, Carlo Jaeger BibTeX
DOI
Modeling and Simulation of Complex Processes
VirtualFlow 2.0 - The Next Generation Drug Discovery Platform Enabling Adaptive Screens of 69 Billion Molecules bioRxiv, 2023 (preprint available as ) Christoph Gorgulla, AkshatKumar Nigam, Matt Koop, Süleyman Selim Çınaroğlu, Christopher Secker, Mohammad Haddadnia, Abhishek Kumar, Yehor Malets, Alexander Hasson, Minkai Li, Ming Tang, Roni Levin-Konigsberg, Dmitry Radchenko, Aditya Kumar, Minko Gehev, Pierre-Yves Aquilanti, Henry Gabb, Amr Alhossary, Gerhard Wagner, Alán Aspuru-Guzik, Yurii S. Moroz, Konstantin Fackeldey, Haribabu Arthanari BibTeX
DOI
Modeling and Simulation of Complex Processes
‘Sawfish’ Spin-Photon Interface for Near-Unity Emitter-to-Waveguide Coupling Conference on Lasers and Electro-Optics (CLEO), p. SF1O.6, OSA Technical Digest, 2023 Julian M. Bopp, Matthias Plock, Tim Turan, Gregor Pieplow, Sven Burger, Tim Schröder BibTeX
DOI
Modeling and Simulation of Complex Processes
2022
A Plug&Play Telecom-Wavelength Single-Photon Source for Quantum Key Distribution Quantum 2.0, p. QTu4C.6, Technical Digest Series (Optica), 2022 Lucas Rickert, Timm Gao, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Tobias Heindel BibTeX
DOI
Modeling and Simulation of Complex Processes
A probabilistic framework for particle-based reaction–diffusion dynamics using classical Fock space representations Letters in Mathematical Physics, 112(49), 2022 Mauricio del Razo, Daniela Frömberg, Arthur Straube, Christof Schütte, Felix Höfling, Stefanie Winkelmann BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
A quantum key distribution testbed using a plug&play telecom-wavelength single-photon source Appl. Phys. Rev., Vol.9, p. 011412, 2022 Timm Gao, Lucas Rickert, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Tobias Heindel BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Approximative Policy Iteration for Exit Time Feedback Control Problems driven by Stochastic Differential Equations using Tensor Train format SIAM Journal on Multiscale Modeling and Simulation, 20(1), pp. 379-403, 2022 Konstantin Fackeldey, Mathias Oster, Leon Sallandt, Reinhold Schneider BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Bayesian Target-Vector Optimization for Efficient Parameter Reconstruction Adv. Theory Simul., Vol.5, p. 2200112, 2022 Matthias Plock, Kas Andrle, Sven Burger, Philipp-Immanuel Schneider BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Boosting quantum optics experiments with Bayesian optimization Proc. SPIE, p. 122270F, Vol.12227, 2022 Philipp-Immanuel Schneider, Lin Zschiedrich, Martin Hammerschmidt, Lilli Kuen, Ivan Sekuliĉ, Julien Kluge, Bastian Leykauf, Markus Krutzik, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Chiral Bioinspired Plasmonics: A Paradigm Shift for Optical Activity and Photochemistry ACS Photon., Vol.9, p. 2219, 2022 Oscar Avalos-Ovando, Eva Yazmin Santiago, Artur Movsesyan, Xiang-Tian Kong, Peng Yu, Lucas V. Besteiro, Larousse Khosravi Khorashad, Hiromi Okamoto, Joseph M. Slocik, Miguel Correa-Duarte, Miguel Comesana-Hermo, Tim Liedl, Gil Markovich, Sven Burger, Alexander O. Govorov BibTeX
DOI
Modeling and Simulation of Complex Processes
Chiral Generation of Hot Carriers for Polarization-Sensitive Plasmonic Photocatalysis with Hybrid Nanostructures J. Am. Chem. Soc., Vol.144, p. 1663, 2022 Yoel Negrin-Montecelo, Artur Movsesyan, Jie Gao, Sven Burger, Zhiming Wang, Sylvain Nlate, Emilie Pouget, Reiko Oda, Miguel Comesana-Hermo, Alexander O. Govorov, Miguel Correa-Duarte BibTeX
DOI
Modeling and Simulation of Complex Processes
Coding for secrecy in remote state estimation with an adversary IEEE Transactions on Automatic Control, 67(9), pp. 4955-4962, 2022 Marvin Lücke, Jingyi Lu, Daniel E. Quevedo BibTeX
DOI
Modeling and Simulation of Complex Processes
Colloidal Titanium Nitride Nanobars for Broadband Inexpensive Plasmonics and Photochemistry from Visible to Mid-IR Wavelengths Nano Energy, Vol.104, p. 107989, 2022 Sourav Rej, Eva Yazmin Santiago, Olga Baturina, Yu Zhang, Sven Burger, Stepan Kment, Alexander O. Govorov, Alberto Naldoni BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Computation of eigenfrequency sensitivities using Riesz projections for efficient optimization of nanophotonic resonators Commun. Phys., Vol.5, p. 202, 2022 Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Data publication for "High-performance designs for fiber-pigtailed quantum-light sources based on quantum dots in electrically-controlled circular Bragg gratings" Zenodo, p. 7360516, 2022 Lucas Rickert, Fridtjof Betz, Matthias Plock, Sven Burger, Tobias Heindel BibTeX
DOI
Modeling and Simulation of Complex Processes
Elementary, my dear Zernike: model order reduction for accelerating optical dimensional microscopy EPJ Web Conf., p. 10010, Vol.266, 2022 Phillip Manley, Jan Krüger, Lin Zschiedrich, Martin Hammerschmidt, Bernd Bodermann, Rainer Köning, Philipp-Immanuel Schneider BibTeX
DOI
Modeling and Simulation of Complex Processes
Emerging frontiers in virtual drug discovery: From quantum mechanical methods to deep learning approaches Current Opinion in Chemical Biology, Vol.69, pp. 102156-102156-12, 2022 Christoph Gorgulla, Abhilash Jayaraj, Konstantin Fackeldey, Haribabu Arthanari BibTeX
DOI
Modeling and Simulation of Complex Processes
Enhanced Purcell factor for nanoantennas supporting interfering resonances Phys. Rev. Research, Vol.4, p. 023189, 2022 Remi Colom, Felix Binkowski, Fridtjof Betz, Yuri Kivshar, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Feedback Loops in Opinion Dynamics of Agent-Based Models with Multiplicative Noise Entropy, Vol.24(10), 2022 Natasa Djurdjevac Conrad, Jonas Köppl, Ana Djurdjevac BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Hormonal regulation of ovarian follicle growth in humans: Model-based exploration of cycle variability and parameter sensitivities Journal of Theoretical Biology, 2022 Sophie Fischer-Holzhausen, Susanna Röblitz BibTeX
DOI
Modeling and Simulation of Complex Processes
Improving perovskite/silicon tandem solar cells with optical simulations Proc. SPIE, p. PC1215001, Vol.PC12150, 2022 Klaus Jäger, Johannes Sutter, Philipp Tockhorn, Martin Hammerschmidt, Philipp-Immanuel Schneider, Steve Albrecht, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Koopman-based spectral clustering of directed and time-evolving graphs Journal of Nonlinear Science, Vol.33, 2022 Stefan Klus, Natasa Djurdjevac Conrad BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Mathematical modelling of follicular growth and ovarian stimulation Current Opinion in Endocrine and Metabolic Research, 2022 Sophie Fischer-Holzhausen, Susanna Röblitz BibTeX
DOI
Modeling and Simulation of Complex Processes
Model-Chain Validation for Estimating the Energy Yield of Bifacial Perovskite/Silicon Tandem Solar Cells Sol. RRL, Vol.6, p. 2200079, 2022 Peter Tillmann, Klaus Jäger, Asher Karsenti, Lev Kreinin, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Nano-optical designs for high-efficiency monolithic perovskite–silicon tandem solar cells Nat. Nanotechnol., Vol.17, p. 1214, 2022 Philipp Tockhorn, Johannes Sutter, Alexandros Cruz, Philipp Wagner, Klaus Jäger, Danbi Yoo, Felix Lang, Max Grischek, Bor Li, Jinzhao Li, Oleksandra Shargaieva, Eva Unger, Amran Al-Ashouri, Eike Köhnen, Martin Stolterfoth, Dieter Neher, Rutger Schlatmann, Bernd Rech, Bernd Stannowski, Steve Albrecht, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Nanooptically Enhanced Perovskite/Silicon Tandem Solar Cells with 29.80% Power Conversion Efficiency OSA Adv. Photonics, p. JTu4H.2, OSA Technical Digest, 2022 Philipp Tockhorn, Johannes Sutter, Alexandros Cruz, Philipp Wagner, Klaus Jäger, Danbi Yoo, Felix Lang, Max Grischek, Bor Li, Amran Al-Ashouri, Eike Köhnen, Martin Stolterfoht, Dieter Neher, Rutger Schlatmann, Bernd Rech, Bernd Stannowski, Steve Albrecht, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Near-unity efficiency in ridge waveguide-based, on-chip single-photon sources Mater. Quantum Technol., Vol.2, p. 045004, 2022 Yujing Wang, Luca Vannucci, Sven Burger, Niels Gregersen BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Numerical methods for the investigation of resonances in nanophotonics The 12th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2022), S. Zouhdi (Ed.), p. 247, 2022 Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Numerical optimization of single-mode fiber- coupled single-photon sources based on semiconductor quantum dots Opt. Express, Vol.30, p. 15913, 2022 Lucas Bremer, Carlos Jimenez, Simon Thiele, Ksenia Weber, Tobias Huber, Sven Rodt, Alois Herkommer, Sven Burger, Sven Höfling, Harald Giessen, Stephan Reitzenstein BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Onset of Chirality in Plasmonic Meta-Molecules and Dielectric Coupling ACS Nano, Vol.16, p. 16143, 2022 Kevin Martens, Timon Funck, Eva Y. Santiago, Alexander O. Govorov, Sven Burger, Tim Liedl BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Optical and Spin Properties of NV Center Ensembles in Diamond Nano-Pillars Nanomaterials, Vol.12, p. 1516, 2022 Kseniia Volkova, Julia Heupel, Sergei Trofimov, Fridtjof Betz, Rémi Colom, Rowan W. MacQueen, Sapida Akhundzada, Meike Reginka, Arno Ehresmann, Johann Peter Reithmeier, Sven Burger, Cyril Popov, Boris Naydenov BibTeX
DOI
Modeling and Simulation of Complex Processes
PCL insufficient patients with increased translational and rotational passive knee joint laxity have no increased range of anterior–posterior and rotational tibiofemoral motion during level walking Scientific Reports, 12(1), pp. 1-11, 2022 Stephan Oehme, Philippe Moewis, Heide Boeth, Benjamin Bartek, Annika Lippert, Christoph von Tycowicz, Rainald Ehrig, Georg Duda, Tobias Jung PDF
BibTeX
DOI
Modeling and Simulation of Complex Processes
Plasmonic nanocrystals with complex shapes for photocatalysis and growth: Contrasting anisotropic hot-electron generation with the photothermal effect Adv. Opt. Mater., Vol.10, p. 2102663, 2022 Artur Movsesyan, Eva Yazmin Santiago, Sven Burger, Miguel Correa-Duarte, Lucas V. Besteiro, Zhiming Wang, Alexander O. Govorov BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Reconstructing phase aberrations for high-precision dimensional microscopy Proc. SPIE, Vol.12137, p. 121370I, 2022 Philipp-Immanuel Schneider, Phillip Manley, Jan Krüger, Lin Zschiedrich, Rainer Köning, Bernd Bodermann, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Research data and example scripts for the paper "Bayesian Target-Vector Optimization for Efficient Parameter Reconstruction" Zenodo, 2022 Matthias Plock, Kas Andrle, Sven Burger, Philipp-Immanuel Schneider BibTeX
DOI
Modeling and Simulation of Complex Processes
Resonant Plasmonic–Biomolecular Chiral Interactions in the Far-Ultraviolet: Enantiomeric Discrimination of sub-10 nm Amino Acid Films Nano Lett., Vol.22, p. 7343, 2022 Tiago Ramos Leite, Lin Zschiedrich, Orhan Kizilkaya, Kevin M. McPeak BibTeX
DOI
Modeling and Simulation of Complex Processes
Scripts for quantifying the effect of diamond nano-pillars on the fluorescence of NV centers Zenodo, 2022 Fridtjof Betz, Remi Colom, Sven Burger, Boris Naydenov BibTeX
DOI
Modeling and Simulation of Complex Processes
Source code and simulation data for Computation of eigenfrequency sensitivities using Riesz projections for efficient optimization of nanophotonic resonators Zenodo, 2022 Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Source code and simulation results for computing resonance expansions of quadratic quantities with regularized quasinormal modes Zenodo, 2022 Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Source code and simulation results for nanoantennas supporting an enhanced Purcell factor due to interfering resonances Zenodo, 2022 Remi Colom, Felix Binkowski, Fridtjof Betz, Yuri Kivshar, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
The androgen system across the menstrual cycle: Hormonal, (epi-)genetic and psychometric alterations Physiology and Behavior, 2022 Tillmann Krüger, Brigitte Leeners, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Harald Engler, Susanna Röblitz, Helge Frieling, Christopher Sinke, Kirsten Jahn BibTeX
DOI
Modeling and Simulation of Complex Processes
The anisotropy of hot carriers’ spatial distribution contrasts the isotropy of photothermal effects in complex and small plasmonic nanocrystals with complex shapes The 12th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2022), S. Zouhdi (Ed.), p. 285, 2022 Artur Movsesyan, Eva Yazmin Santiago, Sven Burger, Miguel Correa-Duarte, Lucas V. Besteiro, Zhiming Wang, Alexander O. Govorov BibTeX
Modeling and Simulation of Complex Processes
Toward maximally electromagnetically chiral scatterers at optical frequencies ACS Photonics, Vol.9, p. 1954, 2022 Xavier Garcia Santiago, Martin Hammerschmidt, Johannes Sachs, Sven Burger, Hyunah Kwon, Marvin Knöller, Tilo Arens, Peer Fischer, Ivan Fernandez-Corbaton, Carsten Rockstuhl BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Tripling the light extraction efficiency of a deep ultraviolet LED using a nanostructured p-contact Sci. Rep., Vol.12, p. 11480, 2022 Eduardo Lopez-Fraguas, Felix Binkowski, Sven Burger, Sylvia Hagedorn, Braulio Garcia-Camara, Ricardo Vergaz, Christiane Becker, Phillip Manley BibTeX
DOI
Modeling and Simulation of Complex Processes
Understanding the Romanization Spreading on Historical Interregional Networks in Northern Tunisia Applied Network Science, Vol.7, 2022 (preprint available as ZIB-Report 22-10) Margarita Kostré, Vikram Sunkara, Christof Schütte, Natasa Djurdjevac Conrad PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Untersuchung des Schwingungseinflusses auf gemessene Punktspreizfunktionen in der optischen Mikroskopie Proc. DGaO, p. P5, 2022 Jan Krüger, Phillip Manley, Lin Zschiedrich, Martin Hammerschmidt, Philipp-Immanuel Schneider, Rainer Köning, Bernd Bodermann BibTeX
URN
Modeling and Simulation of Complex Processes
Visible wavelength spectral tuning of absorption and circular dichroism of DNA-assembled Au/Ag core-shell nanorod assemblies Mater. Adv., Vol.3, p. 3438, 2022 Mihir Dass, Lilli Kuen, Gregor Posnjak, Sven Burger, Tim Liedl BibTeX
DOI
Modeling and Simulation of Complex Processes
2021
A Convergent Discretisation Method for Transition Path Theory for Diffusion Processes Multiscale Modeling & Simulation, 19(1), pp. 242-266, 2021 Nada Cvetkovic, Tim Conrad, Han Cheng Lie BibTeX
DOI
Modeling and Simulation of Complex Processes
A Discrete-Continuous Algorithm for Free Flight Planning Algorithms, 14(1), p. 4, 2021 (preprint available as ) Ralf Borndörfer, Fabian Danecker, Martin Weiser BibTeX
DOI
Modeling and Simulation of Complex Processes
A Framework of Nonequilibrium Statistical Mechanics. I. Role and Types of Fluctuations Journal of Non-Equilibrium Thermodynamics, 46(1), pp. 1-13, 2021 Hans Christian Öttinger, Alberto Montefusco, Mark A. Peletier BibTeX
DOI
Modeling and Simulation of Complex Processes
A Framework of Nonequilibrium Statistical Mechanics. II. Coarse-Graining Journal of Non-Equilibrium Thermodynamics, 46(1), pp. 15-33, 2021 Alberto Montefusco, Mark A. Peletier, Hans Christian Öttinger BibTeX
DOI
Modeling and Simulation of Complex Processes
A Multi-Pronged Approach Targeting SARS-CoV-2 Proteins Using Ultra-Large Virtual Screening iScience, 24(2), p. 102021, 2021 Christoph Gorgulla, Krishna M. Padmanabha Das, Kendra E Leigh, Marco Cespugli, Patrick D. Fischer, Zi-Fu Wang, Guilhem Tesseyre, Shreya Pandita, Alex Shnapir, Anthony Calderaio, Colin Hutcheson, Minko Gechev, Alexander Rose, Noam Lewis, Erez Yaffe, Roni Luxenburg, Henry D. Herce, Vedat Durmaz, Thanos D. Halazonetis, Konstantin Fackeldey, Justin J. Patten, Alexander Chuprina, Igor Dziuba, Alla Plekhova, Yurii Moroz, Dmytro Radchenko, Olga Tarkhanova, Irina Yavnyuk, Christian C. Gruber, Ryan Yust, Dave Payne, Anders M. Näär, Mark N. Namchuk, Robert A. Davey, Gerhard Wagner, Jamie Kinney, Haribabu Arthanari BibTeX
DOI
Modeling and Simulation of Complex Processes
A Quantum Key Distribution Testbed Using Plug&Play Telecom-Wavelength Single-Photons Quantum Information and Measurement VI, p. M2C.1, OSA Technical Digest, 2021 Lucas Rickert, Timm Gao, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Heindel Tobias BibTeX
DOI
Modeling and Simulation of Complex Processes
A primal dual projection algorithm for efficient constraint preconditioning SIAM Journal on Scientific Computing, 43(6), pp. A4095-A4120, 2021 Anton Schiela, Matthias Stöcklein, Martin Weiser BibTeX
DOI
Modeling and Simulation of Complex Processes
A probabilistic algorithm for aggregating vastly undersampled large Markov chains Physica D: Nonlinear Phenomena, Vol.416, 2021 (preprint available as ) Andreas Bittracher, Christof Schütte BibTeX
URN
DOI
Modeling and Simulation of Complex Processes
Advances in Bayesian optimization for photonics and quantum atom optics applications OSA Advanced Photonics Congress, p. JTh1E.2, OSA Technical Digest, 2021 Philipp-Immanuel Schneider, Xavier Garcia-Santiago, Benjamin Wiegand, Oliver Anton, Markus Krutzik, Carsten Rockstuhl, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Agent-based modeling: Population limits and large timescales Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021 Jan-Hendrik Niemann, Stefanie Winkelmann, Sarah Wolf, Christof Schütte PDF
BibTeX
URN
DOI
Modeling and Simulation of Complex Processes
Analyzing Raman Spectral Data without Separabiliy Assumption Journal of Mathematical Chemistry, 3(59), pp. 575-596, 2021 Konstantin Fackeldey, Jonas Röhm, Amir Niknejad, Surahit Chewle, Marcus Weber BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Axial localization and tracking of self-interference nanoparticles by lateral point spread functions Nat. Commun., Vol.12, p. 2019, 2021 Yongtao Liu, Zhiguang Zhou, Fan Wang, Günter Kewes, Shihui Wen, Sven Burger, Majid Ebrahimi Wakiani, Peng Xi, Jiong Yang, Xusan Yang, Oliver Benson, Dayong Jin BibTeX
DOI
Modeling and Simulation of Complex Processes
Bayesian optimization with improved scalability and derivative information for efficient design of nanophotonic structures J. Light. Technol., Vol.39, p. 167, 2021 Xavier Garcia Santiago, Sven Burger, Carsten Rockstuhl, Philipp-Immanuel Schneider BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
CINDy: Conditional gradient-based Identification of Non-linear Dynamics – Noise-robust recovery Journal of Computational and Applied Mathematics, 2021 (under review) Alejandro Carderera, Sebastian Pokutta, Christof Schütte, Martin Weiser BibTeX
arXiv
Modeling and Simulation of Complex Processes
Compression, inversion, and approximate PCA of dense kernel matrices at near-linear computational complexity Multiscale Modeling and Simulation, 19(2), pp. 688-730, 2021 Florian Schäfer, T. J. Sullivan, Houman Owhadi BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Computing the minimal rebinding effect for non-reversible processes Multiscale Modeling and Simulation, 19(1), pp. 460-477, 2021 Susanne Röhl, Marcus Weber, Konstantin Fackeldey BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Contour integral methods for resonance phenomena in nano-optics The 11th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2021), S. Zouhdi, D. Pawlak, A. Kudelski (Eds.), p. 523, 2021 Felix Binkowski, Fridtjof Betz, Remi Colom, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Coupling Particle-Based Reaction-Diffusion Simulations with Reservoirs Mediated by Reaction-Diffusion PDEs Multiscale Modeling & Simulation, 19(4), pp. 1659-1683, 2021 Margarita Kostre, Christof Schütte, Frank Noé, Mauricio del Razo Sarmina BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Data-driven model reduction of agent-based systems using the Koopman generator PLOS ONE, 16(5), 2021 Jan-Hendrik Niemann, Stefan Klus, Christof Schütte BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Deterministically fabricated quantum dot – waveguide systems for on-chip quantum optics Proc. SPIE, p. 118060G, Vol.11806, 2021 Peter Schnauber, Johannes Schall, Samir Bounouar, Kartik Srinivasan, Marcelo Davanco, Jin-Dong Song, Sven Burger, Sven Rodt, Stephan Reitzenstein BibTeX
DOI
Modeling and Simulation of Complex Processes
Different Tools and Results for Correspondence Analysis 2021 N. Alexia Raharinirina, Marcus Weber, Ralph Birk, Konstantin Fackeldey, Sarah M. Klasse, Tonio Sebastian Richter BibTeX
DOI
Modeling and Simulation of Complex Processes
Dimensionality Reduction of Complex Metastable Systems via Kernel Embeddings of Transition Manifolds Journal of Nonlinear Science, Vol.31, 2021 Andreas Bittracher, Stefan Klus, Boumediene Hamzi, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Double-layer metasurface for enhanced photon up-conversion APL Photon., Vol.6, p. 036103, 2021 Phillip Manley, Michele Segantini, Doguscan Ahiboz, Martin Hammerschmidt, Georgios Arnaoutakis, Rowan W. MacQueen, Sven Burger, Christiane Becker BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Efficient Identification of Scars using Heterogeneous Model Hierarchies EP Europace, Vol.23, pp. i113-i122, 2021 Fatemeh Chegini, Alena Kopanicakova, Rolf Krause, Martin Weiser BibTeX
DOI
Modeling and Simulation of Complex Processes
Efficient hybrid method for the modal analysis of optical microcavities and nanoresonators J. Opt. Soc. Am. A, Vol.38, p. 1224, 2021 Tong Wu, Denis Arrivault, Marc Duruflé, Alexandre Gras, Felix Binkowski, Sven Burger, Wei Yan, Philippe Lalanne BibTeX
DOI
Modeling and Simulation of Complex Processes
Efficient modeling and optimization of surface second-harmonic generation from nanophotonic components Doctoral thesis, Friedrich-Schiller-Universität Jena, Thomas Pertsch, Costantino De Angelis, Yuri Kivshar (Advisors), 2021 Anton Pakhomov BibTeX
DOI
Modeling and Simulation of Complex Processes
Enhanced Photon Upconversion Using Erbium-Doped Nanoparticles Interacting with Silicon Metasurfaces IEEE 48th Photovoltaic Specialists Conference (PVSC), pp. 2008-2010, 2021 Doguscan Ahiboz, Elina Andresen, Phillip Manley, Ute Resch Genger, Christian Würth, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Error bounds for some approximate posterior measures in Bayesian inference Numerical Mathematics and Advanced Applications ENUMATH 2019, pp. 275-283, 2021 Han Cheng Lie, T. J. Sullivan, Aretha Teckentrup BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Estimation of the Koopman Generator by Newton's Extrapolation Multiscale Modeling and Simulation, 19(2), pp. 758-774, 2021 Renata Sechi, Alexander Sikorski, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Exploring families of energy-dissipation landscapes via tilting: three types of EDP convergence Continuum Mechanics and Thermodynamics, Vol.33, pp. 611-637, 2021 Alexander Mielke, Alberto Montefusco, Mark A. Peletier BibTeX
DOI
Modeling and Simulation of Complex Processes
Fluctuation distributions of energy minima in complex landscapes Physical Review Research, 3(1), p. 013061, 2021 Horst-Holger Boltz, Jorge Kurchan, Andrea J. Liu BibTeX
DOI
Modeling and Simulation of Complex Processes
From interacting agents to density-based modeling with stochastic PDEs Communications in Applied Mathematics and Computational Science, 16(1), pp. 1-32, 2021 (preprint available as ZIB-Report 19-21) Luzie Helfmann, Natasa Djurdjevac Conrad, Ana Djurdjevac, Stefanie Winkelmann, Christof Schütte PDF (ZIB-Report)
BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
GIXRF and machine learning as metrological tools for shape and element sensitive reconstructions of periodic nanostructures Proc. SPIE, Vol.11611, p. 116110R, 2021 Anna Andrle, Philipp Hönicke, Grzegorz Gwalt, Philipp-Immanuel Schneider, Yves Kayser, Frank Siewert, Victor Soltwisch BibTeX
DOI
Modeling and Simulation of Complex Processes
HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids Euro-Par 2020: Parallel Processing Workshops., pp. 185-196, 2021 Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende BibTeX
DOI
Modeling and Simulation of Complex Processes
Hot Electron Generation through Near-Field Excitation of Plasmonic Nanoresonators ACS Photonics, Vol.8, p. 1243, 2021 Felix Binkowski, Tong Wu, Philippe Lalanne, Sven Burger, Alexander O. Govorov BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Impact of mixed precision and storage layout on additive Schwarz smoothers Numerical Linear Algebra with Applications, 28(4), 2021 (preprint available as ZIB-Report 18-62) Jakob Schneck, Martin Weiser, Florian Wende PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Kaskade 7 - a Flexible Finite Element Toolbox Computers and Mathematics with Applications, Vol.81, pp. 444-458, 2021 (preprint available as ZIB-Report 19-48) Sebastian Götschel, Anton Schiela, Martin Weiser PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Linear Parabolic Problems in Random Moving Domains 9(2), pp. 848-879, 2021 Ana Djurdjevac BibTeX
DOI
Modeling and Simulation of Complex Processes
Long range corrections for inhomogeneous fluids containing a droplet or a bubble Molecular Simulation, pp. 1-14, 2021 Isabel Nitzke, Konstantin Fackeldey, Jadran Vrabec BibTeX
DOI
Modeling and Simulation of Complex Processes
Long- and Short-Ranged Chiral Interactions in DNA Assembled Plasmonic Chains Nat. Commun., Vol.12, p. 2025, 2021 Kevin Martens, Felix Binkowski, Linh Nguyen, Li Hu, Alexander O. Govorov, Sven Burger, Tim Liedl BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Mathematical Modelling and Simulation Provides Evidence for New Strategies of Ovarian Stimulation Frontiers in Endocrinology, Vol.12, 2021 Sophie Fischer, Rainald Ehrig, Stefan Schäfer, Enrico Tronci, Toni Mancini, Marcel Egli, Fabian Ille, Tillmann H. C. Krüger, Brigitte Leeners, Susanna Röblitz BibTeX
DOI
Modeling and Simulation of Complex Processes
Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading Mathematical Biosciences, Vol.336, 2021 Stefanie Winkelmann, Johannes Zonker, Christof Schütte, Natasa Djurdjevac Conrad BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Memory-Based Reduced Modelling and Data-Based Estimation of Opinion Spreading Journal of Nonlinear Science, Vol.31, 2021 Niklas Wulkow, Péter Koltai, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Metasurface-Enhanced Photon Upconversion upon 1550 nm Excitation Adv. Opt. Mater., Vol.9, p. 2101285, 2021 Doguscan Ahiboz, Elina Andresen, Phillip Manley, Ute Resch-Genger, Christian Würth, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Modeling of surface-induced second-harmonic generation from multilayer structures by the transfer matrix method Opt. Express, Vol.29, p. 9098, 2021 Anton V. Pakhomov, Martin Hammerschmidt, Sven Burger, Thomas Pertsch, Frank Setzpfand BibTeX
DOI
Modeling and Simulation of Complex Processes
Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design ZIB-Report 21-19 Sourav Ray, Arne Thies, Vikram Sunkara, Hanna Wulkow, Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann PDF
BibTeX
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Modeling and Simulation of Complex Processes
Multilevel augmented Lagrangian solvers for overconstrained contact formulations ESAIM: ProcS, pp. 175-184, Vol.71, 2021 Rolf Krause, Martin Weiser BibTeX
DOI
Modeling and Simulation of Complex Processes
Nanophotonics for Solar Energy Sol. Energy Mater. Sol. Cells, Vol.221, p. 110916, 2021 Christiane Becker, Klaus Jäger, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Neue Medikamente dank Supercomputern Spektrum der Wissenschaft, pp. 40-46, 2021 Konstantin Fackeldey, Christoph Gorgulla, Marcus Weber BibTeX
Modeling and Simulation of Complex Processes
Non-stationary incompressible linear fluid equations in a moving domain arXiv, 2021 Ana Djurdjevac, Carsten Gräser, Philip J. Herbert BibTeX
arXiv
Modeling and Simulation of Complex Processes
Numerical methods for shape optimization of photonic nanostructures Doctoral thesis, Karlsruher Institut für Technologie, Carsten Rockstuhl (Advisor), 2021 Xavier Garcia Santiago BibTeX
DOI
Modeling and Simulation of Complex Processes
Objective priors in the empirical Bayes framework Scandinavian Journal of Statistics, 48(4), pp. 1212-1233, 2021 Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz BibTeX
DOI
Modeling and Simulation of Complex Processes
Optimized diamond inverted nanocones for enhanced color center to fiber coupling Appl. Phys. Lett., Vol.118, p. 234002, 2021 Cem Güney Torun, Philipp-Immanuel Schneider, Martin Hammerschmidt, Sven Burger, Joseph H.D. Munns, Tim Schröder BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Optimizing metal grating back reflectors for III-V-on-silicon multijunction solar cells Opt. Express, Vol.29, p. 22517, 2021 Peter Tillmann, Benedikt Bläsi, Sven Burger, Martin Hammerschmidt, Oliver Höhn, Christiane Becker, Klaus Jäger BibTeX
DOI
Modeling and Simulation of Complex Processes
Perovskite/silicon tandem solar cells: Effect of luminescent coupling and bifaciality Sol. RRL, Vol.5, p. 2000628, 2021 Klaus Jäger, Peter Tillmann, Eugene A. Katz, Christiane Becker BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Photonic components in polymers made by femtosecond pulses Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference (CLEO/Europe-EQEC), p. 1, 2021 Dmitrii Perevoznik, Surajit Bose, Sven Burger, Ayhan Demircan, Uwe Morgner BibTeX
DOI
Modeling and Simulation of Complex Processes
Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts PLOS One, 16(4), 2021 Hanna Wulkow, Tim Conrad, Natasa Djurdjevac Conrad, Sebastian A. Müller, Kai Nagel, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Prospects of light management in perovskite/silicon tandem solar cells Nanophotonics, Vol.10, p. 1991, 2021 Klaus Jäger, Johannes Sutter, Martin Hammerschmidt, Philipp-Immanuel Schneider, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Quantitative spectroscopy of single molecule interaction times Optic Letters, 46(7), pp. 1538-1541, 2021 Horst-Holger Boltz, Alexei Sirbu, Nina Stelzer, Martin J. Lohse, Christof Schütte, Paolo Annibale BibTeX
DOI
Modeling and Simulation of Complex Processes
RPExpand: Software for Riesz projection expansion of resonance phenomena SoftwareX, Vol.15, p. 100763, 2021 Fridtjof Betz, Felix Binkowski, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
RPExpand: Software for Riesz projection expansion of resonance phenomena [Source Code] 2021 Fridtjof Betz, Felix Binkowski, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Recent advances in Bayesian optimization with applications to parameter reconstruction in optical nano-metrology Proc. SPIE, Vol.11783, p. 117830J, 2021 Matthias Plock, Sven Burger, Philipp-Immanuel Schneider BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Relaxed current-matching constraints by bifacial operation and luminescent coupling in perovskite/silicon tandem solar cells 2021 IEEE 48th Photovoltaic Specialists Conference (PVSC), p. 1086, 2021 Peter Tillmann, Klaus Jäger, Eugene Katz, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Shape- and Element-Sensitive Reconstruction of Periodic Nanostructures with Grazing Incidence X-ray Fluorescence Analysis and Machine Learning Nanomaterials, Vol.11, p. 1647, 2021 Anna Andrle, Philipp Hönicke, Grzegorz Gwalt, Philipp-Immanuel Schneider, Yves Kayser, Frank Siewert, Victor Soltwisch BibTeX
DOI
Modeling and Simulation of Complex Processes
Spectral expansions of open and dispersive optical systems: Gaussian regularization and convergence New J. Phys., Vol.23, p. 083004, 2021 Brian Stout, Remi Colom, Nicolas Bonod, Ross C McPhedran BibTeX
DOI
Modeling and Simulation of Complex Processes
Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021 Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling BibTeX
DOI
Modeling and Simulation of Complex Processes
The Augmented Jump Chain Advanced Theory and Simulations, 4(4), 2021 Alexander Sikorski, Marcus Weber, Christof Schütte BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
The linear conditional expectation in Hilbert space Bernoulli, 27(4), pp. 2299-2299, 2021 Ilja Klebanov, Björn Sprungk, T. J. Sullivan BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Thermally active nanoparticle clusters enslaved by engineered domain wall traps Nature Commun., Vol.12, p. 5813, 2021 Pietro Tierno, Tom H. Johansen, Arthur Straube BibTeX
DOI
Modeling and Simulation of Complex Processes
Transition paths of marine debris and the stability of the garbage patches Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021 Philippe Miron, Francisco Beron-Vera, Luzie Helfmann, Péter Koltai BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Variance of filtered signals: Characterization for linear reaction networks and application to neurotransmission dynamics ZIB-Report 21-15 (Mathematical Biosciences 343:108760) Ariane Ernst, Christof Schütte, Stephan Sigrist, Stefanie Winkelmann PDF
BibTeX
URN
DOI
Modeling and Simulation of Complex Processes
Writing Photonic Components in Polymers Using Femtosecond Pulses Conference on Lasers and Electro-Optics (CLEO), p. ATh4P.4, OSA Technical Digest, 2021 Dmitrii Perevoznik, Surajit Bose, Sven Burger, Ayhan Demircan, Uwe Morgner BibTeX
DOI
Modeling and Simulation of Complex Processes
2020
A Riesz-projection-based method for nonlinear eigenvalue problems J. Comput. Phys., Vol.419, p. 109678, 2020 Felix Binkowski, Lin Zschiedrich, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
A rigorous theory of conditional mean embeddings SIAM Journal on Mathematics of Data Science, 2(3), pp. 583-606, 2020 Ilja Klebanov, Ingmar Schuster, T. J. Sullivan BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
A weak characterization of slow variables in stochastic dynamical systems Advances in Dynamics, Optimization and Computation. Series: Studies in Systems, Decision and Control. A volume dedicated to Michael Dellnitz on the occasion of his 60th birthday, Vol.304, pp. 132-150, Oliver Junge, O. Schütze, Gary Froyland, S. Ober-Blobaum, E. Padberg-Gehle (Eds.), Springer International, 2020, ISBN: 978-3-030-51264-4 Andreas Bittracher, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Accounting of Receptor Flexibility in Ultra-Large Virtual Screens with VirtualFlow Using a Grey Wolf Optimization Method Supercomputing Frontiers and Innovations, 7(3), pp. 4-12, 2020 Christoph Gorgulla, Konstantin Fackeldey, Gerhard Wagner, Haribabu Arthanari BibTeX
DOI
Modeling and Simulation of Complex Processes
Adaptive reconstruction of imperfectly-observed monotone functions, with applications to uncertainty quantification Algorithms, 13(8), p. 196, 2020 Luc Bonnet, Jean-Luc Akian, Éric Savin, T. J. Sullivan BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
An open-source drug discovery platform enables ultra-large virtual screens Nature, Vol.580, pp. 663-668, 2020 Christoph Gorgulla, Andras Boeszoermnyi, Zi-Fu Wang, Patrick D. Fischer, Paul Coote, Krishna M. Padmanabha Das, Yehor S. Malets, Dmytro S. Radchenko, Yurii Moroz, David A. Scott, Konstantin Fackeldey, Moritz Hoffmann, Iryna Iavniuk, Gerhard Wagner, Haribabu Arthanari BibTeX
DOI
Modeling and Simulation of Complex Processes
Collective directional locking of colloidal monolayers on a periodic substrate Phys. Rev. Lett., Vol.124, p. 058002, 2020 Ralph L. Stoop, Arthur Straube, Tom H. Johansen, Pietro Tierno BibTeX
DOI
Modeling and Simulation of Complex Processes
Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint bioarxiv (Accepted in Osteoarthr. Cartil.), 2020 Vikram Sunkara, Gitta A. Heinz, Frederik F. Heinrich, Pawel Durek, Ali Mobasheri, Mir-Farzin Mashreghi, Annemarie Lang BibTeX
DOI
Modeling and Simulation of Complex Processes
Convergence rates of Gaussian ODE filters Statistics and Computing, Vol.30, pp. 1791-1816, 2020 Hans Kersting, T. J. Sullivan, Philipp Hennig BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
DIN SPEC 2343: Übertragung von sprachbasierten Daten zwischen Künstlichen Intelligenzen - Festlegung von Parametern und Formaten Beuth Verlag, 2020 Marcus Weber, Weitere Autoren BibTeX
Modeling and Simulation of Complex Processes
Data-driven approximation of the Koopman generator: Model reduction, system identification, and control Physica D: Nonlinear Phenomena, Vol.406, 2020 (epub ahead of print) Stefan Klus, Feliks Nüske, Sebastian Peitz, Jan-Hendrik Niemann, Cecilia Clementi, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Detailed illumination model for bifacial solar cells Opt. Express, Vol.28, p. 4751, 2020 Klaus Jäger, Peter Tillmann, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Deterministic Quantum Devices for Optical Quantum Communication Semiconductor Nanophotonics, Michael Kneissl, Andreas Knorr, Stephan Reitzenstein, Axel Hoffmann (Eds.), Springer: Cham, pp. 285-359, 2020 Sven Rodt, Philipp-Immanuel Schneider, Lin Zschiedrich, Tobias Heindel, Samir Bounouar, Markus Kantner, Thomas Koprucki, Uwe Bandelow, Sven Burger, Stephan Reitzenstein BibTeX
DOI
Modeling and Simulation of Complex Processes
Directional single-photon emission from deterministic quantum dot waveguide structures Phys. Status Solidi RRL, Vol.14, p. 2000115, 2020 Paweł Mrowiński, Peter Schnauber, Arsenty Kaganskiy, Johannes Schall, Sven Burger, Sven Rodt, Stephan Reitzenstein BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Effect of choice of solvent on crystallization pathway of Paracetamol: An experimental and theoretical case study Crystals, 10(12), p. 1107, 2020 Surahit Chewle, Franziska Emmerling, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Efficient Bayesian inversion for shape reconstruction of lithography masks J. Micro/Nanolith. MEMS MOEMS, Vol.19, p. 024001, 2020 Nando Farchmin, Martin Hammerschmidt, Philipp-Immanuel Schneider, Matthias Wurm, Bernd Bodermann, Markus Bär, Sebastian Heidenreich BibTeX
DOI
Modeling and Simulation of Complex Processes
Extending Transition Path Theory: Periodically Driven and Finite-Time Dynamics Journal of Nonlinear Science, Vol.30, pp. 3321-3366, 2020 Luzie Helfmann, Enric Ribera Borrell, Christof Schütte, Peter Koltai BibTeX
DOI
Modeling and Simulation of Complex Processes
Extracting dimensional parameters of gratings produced with self-aligned multiple patterning using grazing-incidence small-angle x-ray scattering J. Micro Nanolithogr. MEMS MOEMS, Vol.19, p. 014001, 2020 Mika Pflüger, R. Joseph Kline, Analia Fernández Herrero, Martin Hammerschmidt, Victor Soltwisch, Michael Krumrey BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Extracting dimensional parameters of gratings produced with self-aligned multiple patterning using grazing-incidence small-angle x-ray scattering [Source Code] 2020 Mika Pflüger, R Joseph Kline, Analía Fernández Herrero, Martin Hammerschmidt, Victor Soltwisch, Michael Krumrey BibTeX
DOI
Modeling and Simulation of Complex Processes
Far-field polarization signatures of surface optical nonlinearity in noncentrosymmetric semiconductors Sci. Rep., Vol.10, p. 10545, 2020 Anton Pakhomov, Franz Löchner, Lin Zschiedrich, Sina Saravi, Martin Hammerschmidt, Sven Burger, Thomas Pertsch, Frank Setzpfand BibTeX
DOI
Modeling and Simulation of Complex Processes
Field Heterogeneities and Their Impact on Photocatalysis: Combining Optical and Kinetic Monte Carlo Simulations on the Nanoscale J. Phys. Chem. C, Vol.124, p. 3177, 2020 (preprint available as ZIB-Report 17-20) Martin Hammerschmidt, Sandra Döpking, Sven Burger, Sebastian Matera PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Flat optics in high numerical aperture broadband imaging systems J. Opt., Vol.22, p. 065607, 2020 Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker BibTeX
DOI
Modeling and Simulation of Complex Processes
Front Cover: Plug&Play Fiber‐Coupled 73 kHz Single‐Photon Source Operating in the Telecom O‐Band (Adv. Quantum Technol. 6/2020) Adv. Quantum Technol., Vol.3, p. 2070061, 2020 Anna Musiał, Kinga Żołnacz, Nicole Srocka, Oleh Kravets, Jan Große, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wojcik, Paweł Mergo, Kamil Dybka, Mariusz Dyrkacz, Michal Dlubek, Kristian Lauritsen, Andreas Bülter, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger, Sven Rodt, Wacław Urbanczyk, Grzegorz Sek, Stephan Reitzenstein BibTeX
DOI
Modeling and Simulation of Complex Processes
General design formalism for highly efficient flat optics for broadband applications Opt. Express, Vol.28, p. 6452, 2020 Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker BibTeX
DOI
Modeling and Simulation of Complex Processes
Generalisierte Markov-Modellierung Springer Spektrum, Wiesbaden, 2020, ISBN: 978-3-658-29711-4 Bernhard Reuter BibTeX
DOI
Modeling and Simulation of Complex Processes
HIF-stabilization prevents delayed fracture healing bioarxiv, 2020 (under review) Annemarie Lang, Sarah Helfmeier, Jonathan Stefanowski, Aditi Kuppe, Vikram Sunkara, Moritz Pfeiffenberger, Angelique Wolter, Alexandra Damerau, Shabnam Hemmati-Sadeghi, Jochen Ringe, Rainer Haag, Anja E. Hauser, Max Löhning, Carsten Perka, Georg Duda, Paula Hoff, Katharina Schmidt-Bleek, Timo Gaber, Frank Buttgereit BibTeX
DOI
Modeling and Simulation of Complex Processes
Helicity-Preserving Optical Cavity Modes for Enhanced Sensing of Chiral Molecules Phys. Rev. Lett., Vol.124, p. 033201, 2020 Joshua Feis, Dominik Beutel, Julian Köpfler, Xavier Garcia Santiago, Carsten Rockstuhl, Martin Wegener, Ivan Fernandez-Corbaton BibTeX
DOI
Modeling and Simulation of Complex Processes
Hot electrons generated in chiral plasmonic nanocrystals as a mechanism for surface photochemistry and chiral growth J. Am. Chem. Soc., Vol.142, p. 4193, 2020 Larousse Khosravi Khorashad, Lucas V. Besteiro, Miguel Correa-Duarte, Sven Burger, Zhiming M. Wang, Alexander O. Govorov BibTeX
DOI
Modeling and Simulation of Complex Processes
How to calculate pH-dependent binding rates for receptor-ligand systems based on thermodynamic simulations with different binding motifs Molecular Simulation, 46(18), pp. 1443-1452, 2020 (preprint available as ) Sourav Ray, Vikram Sunkara, Christof Schütte, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
ISOKANN: Invariant subspaces of Koopman operators learned by a neural network The Journal of Chemical Physics, 153(11), p. 114109, 2020 Robert Julian Rabben, Sourav Ray, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Impact of Contact Surfaces on the Death Estimation Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Martin Weiser (Advisors), 2020 Felix Baumann BibTeX
Modeling and Simulation of Complex Processes
Improved Quantum Efficiency by Advanced Light Management in Nanotextured Solution-Processed Perovskite Solar Cells ACS Photonics, Vol.7, p. 2589, 2020 Philipp Tockhorn, Johannes Sutter, Rémi Colom, Lukas Kegelmann, Amran Al-Ashouri, Marcel Roß, Klaus Jäger, Thomas Unold, Sven Burger, Steve Albrecht, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Inferring Gene Regulatory Networks from Single Cell RNA-seq Temporal Snapshot Data Requires Higher Order Moments ZIB-Report 20-25 Vikram Sunkara, N. Alexia Raharinirina, Felix Peppert, Max von Kleist, Christof Schütte PDF
BibTeX
URN
Modeling and Simulation of Complex Processes
Investigation and application of contour integral methods for resonance expansion in nanophotonics Master's thesis, Freie Universität Berlin, Sven Burger, Ana-Nicoleta Bondar (Advisors), 2020 Fridtjof Betz BibTeX
Modeling and Simulation of Complex Processes
Macroscale mesenchymal condensation to study cytokine-driven cellular and matrix-related changes during cartilage degradation Biofabrication, 12(4), 2020 Marie-Christin Weber, Lisa Fischer, Alexandra Damerau, Igor Ponomarev, Moritz Pfeiffenberger, Timo Gaber, Sebastian Götschel, Jens Lang, Susanna Röblitz, Frank Buttgereit, Rainald Ehrig, Annemarie Lang BibTeX
DOI
Modeling and Simulation of Complex Processes
Markov Chain Importance Sampling - a highly efficient estimator for MCMC Journal of Computational and Graphical Statistics, 2020 (epub ahead of print) Ilja Klebanov, Ingmar Schuster BibTeX
DOI
Modeling and Simulation of Complex Processes
Mathematical Modeling of Metabolic-Genetic Networks Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2020 Neveen Ali Salem Eshtewy BibTeX
Modeling and Simulation of Complex Processes
Metasurface enhanced sensitized photon upconversion: towards highly efficient low power upconversion applications and nano-scale E-field sensors Nano Lett., Vol.20, p. 6682, 2020 Christian Würth, Phillip Manley, Robert Voigt, Doguscan Ahiboz, Christiane Becker, Ute Resch-Genger BibTeX
DOI
Modeling and Simulation of Complex Processes
Minimising levelised cost of electricity of bifacial solar panel arrays using Bayesian optimisation Sustain. Energy Fuels, Vol.4, p. 254, 2020 Peter Tillmann, Klaus Jäger, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Mixed finite elements in cloth simulation Master's thesis, Beuth Hochschule für Technik Berlin, Martin Weiser, Frank Haußer (Advisors), 2020 Phillip Semler BibTeX
Modeling and Simulation of Complex Processes
Modal Expansion of the Impulse Response Function for Predicting the Time Dynamics of Open Optical Cavities arXiv, 2020 (under review) Rémi Colom, Brian Stout, Nicolas Bonod BibTeX
arXiv
Modeling and Simulation of Complex Processes
Modal expansion of optical far-field quantities using quasinormal modes EPJ Web Conf., p. 05007, Vol.238, 2020 Felix Binkowski, Fridtjof Betz, Rémi Colom, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Model-based exploration of the impact of glucose metabolism on the estrous cycle dynamics in dairy cows Biology Direct, Vol.15, 2020 Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz BibTeX
DOI
Modeling and Simulation of Complex Processes
Modeling Optical Materials at the Single Scatterer Level: The Transition from Homogeneous to Heterogeneous Materials Adv. Theory Simul., Vol.3, p. 2000192, 2020 Daniel Werdehausen, Xavier Garcia Santiago, Sven Burger, Isabelle Staude, Thomas Pertsch, Carsten Rockstuhl, Manuel Decker BibTeX
DOI
Modeling and Simulation of Complex Processes
Multi-dimensional modeling and simulation of semiconductor nanophotonic devices Semiconductor Nanophotonics, Michael Kneissl, Andreas Knorr, Stephan Reitzenstein, Axel Hoffmann (Eds.), Springer: Cham, pp. 241-283, 2020 Markus Kantner, Theresa Höhne, Thomas Koprucki, Sven Burger, Hans-Jürgen Wünsche, Frank Schmidt, Alexander Mielke, Uwe Bandelow BibTeX
DOI
Modeling and Simulation of Complex Processes
Nanopatterned Sapphire Substrates in Deep-UV LEDs: Is there an Optical Benefit? Opt. Express, Vol.28, p. 3619, 2020 Phillip Manley, Sebastian Walde, Sylvia Hagedorn, Martin Hammerschmidt, Sven Burger, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Numerische Mathematik 3. Adaptive Lösung partieller Differentialgleichungen de Gruyter, 2, 2020, ISBN: 978-3-11-069168-9 Peter Deuflhard, Martin Weiser BibTeX
DOI
Modeling and Simulation of Complex Processes
On enhanced sensing of chiral molecules in optical cavities Appl. Phys. Rev., Vol.7, p. 041413, 2020 Philip Scott, Xavier Garcia Santiago, Dominik Beutel, Carsten Rockstuhl, Martin Wegener, Ivan Fernandez-Corbaton BibTeX
DOI
Modeling and Simulation of Complex Processes
Optimality criteria for probabilistic numerical methods Multivariate Algorithms and Information-Based Complexity, Vol.27, pp. 65-88, F. J. Hickernell, P. Kritzer (Eds.), De Gruyter, 2020 Chris Oates, Jon Cockayne, Dennis Prangle, T. J. Sullivan, Mark Girolami BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Plug&play fibre-coupled 73 kHz single-photon source operating in the telecom O-band Adv. Quantum Technol., Vol.3, p. 2000018, 2020 Anna Musiał, Kinga Żołnacz, Nicole Srocka, Oleh Kravets, Jan Große, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wojcik, Paweł Mergo, Dybka Kamil, Mariusz Dyrkacz, Michal Dlubek, Kristian Lauritsen, Andreas Bülter, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger, Sven Rodt, Wacław Urbanczyk, Grzegorz Sek, Stephan Reitzenstein BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Progressive Self-Boosting Anapole-Enhanced Deep-Ultraviolet Third Harmonic During Few-Cycle Laser Radiation ACS Photonics, Vol.7, p. 1655, 2020 Liping Shi, Andrey B. Evlyukhin, Carsten Reinhardt, Ihar Babushkin, Vladimir A. Zenin, Sven Burger, Radu Malureanu, Boris N. Chichkov, Uwe Morgner, Milutin Kovacev BibTeX
DOI
Modeling and Simulation of Complex Processes
Quantifying Asymmetry in Gait: A Weighted Universal Symmetry Index to Evaluate 3D Ground Reaction Forces Frontiers in Bioengineering and Biotechnology, 2020 Sónia Alves, Rainald Ehrig, Peter C. Raffalt, Alwina Bender, Georg Duda, Alison N. Agres BibTeX
Modeling and Simulation of Complex Processes
Quasi-bound states in the continuum for deep subwavelength structural information retrieval for DUV nano-optical polarizers Opt. Express, Vol.28, p. 23122, 2020 Thomas Siefke, Carol Hurtado, Johannes Dickmann, Walter Dickmann, Tim Käseberg, Jan Meyer, Sven Burger, Uwe Zeitner, Bernd Bodermann, Stefanie Kroker BibTeX
DOI
Modeling and Simulation of Complex Processes
Quasi-normal mode expansion as a tool for the design of nanophotonic devices EPJ Web Conf., p. 05008, Vol.238, 2020 Rémi Colom, Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Quasinormal mode expansion of optical far-field quantities Phys. Rev. B, Vol.102, p. 035432, 2020 Felix Binkowski, Fridtjof Betz, Rémi Colom, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Rapid onset of molecular friction in liquids bridging between the atomistic and hydrodynamic pictures Commun. Phys., Vol.3, p. 126, 2020 Arthur Straube, Bartosz G. Kowalik, Roland R. Netz, Felix Höfling BibTeX
DOI
Modeling and Simulation of Complex Processes
Regularization of Elliptic Partial Differential Equations using Neural Networks Master's thesis, Freie Universität Berlin, Christof Schütte, Martin Weiser (Advisors), 2020 Hanna Wulkow BibTeX
Modeling and Simulation of Complex Processes
Revealing secrets of mussel-glue mimetic peptides - From advanced NMR to computational process modelling Doctoral thesis, Humboldt-Universität zu Berlin, Hans Börner, Marcus Weber (Advisors), 2020 Narendra Lagumaddepalli Venkatareddy BibTeX
Modeling and Simulation of Complex Processes
Role of Geometric Shape in Chiral Optics Symmetry, Vol.12, p. 158, 2020 Philipp Gutsche, Xavier Garcia Santiago, Philipp-Immanuel Schneider, Kevin McPeak, Manuel Nieto-Vesperinas, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Simulating bifacial perovskite/silicon tandem solar cells in large PV fields OSA Advanced Photonics Congress, p. PvTh1G.3, OSA Technical Digest, 2020 Klaus Jäger, Peter Tillmann, Eugene A. Katz, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Single molecule mu-opioid receptor membrane-dynamics reveal agonist-specific dimer formation with super-resolved precision Nature Chemical Biology, Vol.16, pp. 946-954, 2020 Jan Möller, Ali Isbilir, Titiwat Sungkaworn, Brenda Osberg, Christos Karathanasis, Vikram Sunkara, Eugene O Grushevsky, Andreas Bock, Paolo Annibale, Mike Heilemann, Christof Schütte, Martin J. Lohse BibTeX
DOI
Modeling and Simulation of Complex Processes
Singular Value Decomposition of Operators on Reproducing Kernel Hilbert Spaces Advances om Dynamics, Optimization and Computation. Series: Studies in Systems, Decision and Control. A volume dedicated to Michael Dellnitz on his 60th birthday, Vol.304, pp. 109-131, Oliver Junge, O. Schütze, Gary Froyland, S. Ober-Blobaum, K. Padberg-Gehle (Eds.), Springer International, 2020, ISBN: 978-3-030-51264-4 Mattes Mollenhauer, Ingmar Schuster, Stefan Klus, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Stand-alone quantum dot-based single-photon source operating at telecommunication wavelengths 10th International Conference on Spontaneous Coherence in Excitonic Systems ICSCE10, p. 39, 2020 Anna Musial, Kinga Zolnacz, Nicole Srocka, Oleh Kravets, Jan Große, Philipp-Immanuel Schneider, Jacek Olszewski, Krzystof Poturaj, Grzegorz Wojcik, Pawel Mergo, Kamil Dybka, Mariusz Dyrkacz, Michal Dlubek, Sven Rodt, Sven Burger, Lin Zschiedrich, Waclaw Urbanczyk, Grzegorz Sek, Stephan Reitzenstein BibTeX
Modeling and Simulation of Complex Processes
Stochastic Dynamics in Computational Biology Springer International Publishing, 2020, ISBN: 978-3-030-62386-9 Stefanie Winkelmann, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Sub-ambient pressure IR-MALDI ion mobility spectrometer for the determination of low and high field mobilities Analytical and Bioanalytical Chemistry, Vol.412, pp. 5247-5260, 2020 José Villatoro, Martin Zühlke, Daniel Riebe, Toralf Beitz, Marcus Weber, Hans-Gerd Löhmannsröben BibTeX
DOI
Modeling and Simulation of Complex Processes
The Furnace and the Goat—A spatio-temporal model of the fuelwood requirement for iron metallurgy on Elba Island, 4th century BCE to 2nd century CE PLOS ONE, Vol.15, pp. 1-37, 2020 Fabian Becker, Natasa Djurdjevac Conrad, Raphael A. Eser, Luzie Helfmann, Brigitta Schütt, Christof Schütte, Johannes Zonker BibTeX
DOI
Modeling and Simulation of Complex Processes
The relative contributions of infectious and mitotic spread to HTLV-1 persistence PLOS Computational Biology, 2020 Daniel J. Laydon, Vikram Sunkara, Lies Boelen, Charles R. M. Bangham, Becca Asquith BibTeX
DOI
Modeling and Simulation of Complex Processes
2019
A Dynamic Memory Approach for Consensus Problems with Packet Loss Master's thesis, Technische Universität Hamburg-Harburg, Furugh Mirali (Advisor), 2019 Jan-Hendrik Niemann BibTeX
Modeling and Simulation of Complex Processes
A Mathematical Model for the Influence of Glucose-Insulin Dynamics on the Estrous Cycle in Dairy Cows ZIB-Report 19-22 Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz PDF
BibTeX
URN
Modeling and Simulation of Complex Processes
A Mathematical Model of Bovine Metabolism and Reproduction: Application to Feeding Strategies, Drug Administration and Experimental Design Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 Mohamed Omari BibTeX
Modeling and Simulation of Complex Processes
A modern retrospective on probabilistic numerics Statistics and Computing, 29(6), pp. 1335-1351, 2019 Chris Oates, T. J. Sullivan BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
A pharmacokinetic-pharmacodynamic model for single dose administration of Dexamethasone in dairy cows ZIB-Report 19-53 Mohamed Omari, Julia Plöntzke, Susanna Röblitz PDF
BibTeX
URN
Modeling and Simulation of Complex Processes
Achiral, Helicity Preserving, and Resonant Structures for Enhanced Sensing of Chiral Molecules ACS Photonics, Vol.6, p. 482, 2019 Florian Graf, Joshua Feis, Xavier Garcia Santiago, Martin Wegener, Carsten Rockstuhl, Ivan Fernandez-Corbaton BibTeX
DOI
Modeling and Simulation of Complex Processes
Adaptive Multigrid Solvers for Space-Time Discretisations Master's thesis, Freie Universität Berlin, Christof Schütte, Rolf Krause, Martin Weiser (Advisors), 2019 Lisa Gaedke-Merzhäuser BibTeX
Modeling and Simulation of Complex Processes
Algebraic Expressions of Conditional Expectations in Gene Regulatory Networks Journal of Mathematical Biology, pp. 1779-1829, 2019 Vikram Sunkara PDF
BibTeX
URN
DOI
Modeling and Simulation of Complex Processes
An Efficient Parallel-in-Time Method for Optimization with Parabolic PDEs SIAM J. Sci. Comput., 41(6), pp. C603-C626, 2019 (preprint available as ZIB-Report 19-04) Sebastian Götschel, Michael L. Minion PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
An auxiliary field approach for computing optical resonances in dispersive media J. Eur. Opt. Soc.-Rapid, Vol.15, p. 3, 2019 Felix Binkowski, Lin Zschiedrich, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Analysis of long non-coding RNA and mRNA expression in bovine macrophages brings up novel 2 aspects of Mycobacterium avium subspecies paratuberculosis infections Scientific Reports in Nature, Vol.9, 2019 Pooja Gupta, Sarah Peter, Markus Jung, Astrid Lewin, Georg Hemmrich-Stanisak, Andre Franke, Max von Kleist, Christof Schütte, Ralf Einspanier, Soroush Sharbati, Jennifer zur Bruegge BibTeX
DOI
Modeling and Simulation of Complex Processes
Automating PCCA+ applied to Eye-Tracking Data Master's thesis, Technische Universität Berlin, Marcus Weber (Advisor), 2019 Lara Hoffmann BibTeX
Modeling and Simulation of Complex Processes
Bayesian Probabilistic Numerical Methods SIAM Review, 61(4), pp. 756-789, 2019 Jon Cockayne, Chris Oates, T. J. Sullivan, Mark Girolami BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Benchmarking five global optimization approaches for nano-optical shape optimization and parameter reconstruction ACS Photonics, Vol.6, p. 2726, 2019 Philipp-Immanuel Schneider, Xavier Garcia Santiago, Victor Soltwisch, Martin Hammerschmidt, Sven Burger, Carsten Rockstuhl BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Bestimmung invarianter Unterräume des Koopman-Operators einer Overdamped Langevin-Dynamik mithilfe eines Muli-Layer Neural Networks Bachelor's thesis, Technische Universität Berlin, Marcus Weber (Advisor), 2019 Robert Julian Rabben BibTeX
Modeling and Simulation of Complex Processes
Classification of the toxicity profile of the withdrawn drugs using computational prediction platform ProTox-II Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 Seyma Boz BibTeX
Modeling and Simulation of Complex Processes
Combining in vitro simulation and in silico modelling towards a sophisticated human osteoarthritis model Osteoarthritis and Cartilage, Vol.27, p. S183, 2019 Annemarie Lang, Lisa Fischer, Marie-Christin Weber, Timo Gaber, Rainald Ehrig, Susanna Röblitz, Frank Buttgereit BibTeX
DOI
Modeling and Simulation of Complex Processes
Compression Challenges in Large Scale Partial Differential Equation Solvers Algorithms, 12(9), p. 197, 2019 (preprint available as ZIB-Report 19-32) Sebastian Götschel, Martin Weiser PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Computation of temperature-dependent dissociation rates of metastable protein–ligand complexes Molecular Simulation, 45(11), pp. 904-911, 2019 Natalia Ernst, Konstantin Fackeldey, Andrea Volkamer, Oliver Opatz, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Computational Models for the prediction of drug-induced Nephrotoxicity Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 Ole Wachsmann BibTeX
Modeling and Simulation of Complex Processes
Computing Optical Resonances in Plasmonic Systems Using a Contour Integral Method Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 1068, 2019 Felix Binkowski, Lin Zschiedrich, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Computing resonances in nano-photonic devices using Riesz-projection-based methods The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 92, 2019 Sven Burger, Felix Binkowski, Lin Zschiedrich BibTeX
Modeling and Simulation of Complex Processes
Contributed discussion on the article "A Bayesian conjugate gradient method" Bayesian Analysis, 14(3), pp. 985-989, 2019 T. J. Sullivan BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Correlation of circular differential optical absorption with geometric chirality in plasmonic meta-atoms Opt. Express, Vol.27, p. 5097, 2019 Jon Wilson, Philipp Gutsche, Sven Herrmann, Sven Burger, Kevin McPeak BibTeX
DOI
Modeling and Simulation of Complex Processes
Decomposition of scattered electromagnetic fields into vector spherical wave functions on surfaces with general shapes Phys. Rev. B, Vol.99, p. 045406, 2019 Xavier Garcia Santiago, Martin Hammerschmidt, Sven Burger, Carsten Rockstuhl, Ivan Fernandez-Corbaton, Lin Zschiedrich BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Deterministic integration of quantum dots into on-chip multi-mode interference couplers via in-situ electron beam lithography Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference (CLEO/EQEC), p. EB2.2, OSA Technical Digest, 2019 Peter Schnauber, Johannes Schall, Samir Bounouar, Theresa Höhne, Suk-In Park, Geun-Hwan Ryu, Tobias Heindel, Sven Burger, Jin-Dong Song, Sven Rodt, Stephan Reitzenstein BibTeX
DOI
Modeling and Simulation of Complex Processes
Development of Titanium Dioxide Metasurfaces and Nanosoupbowls for Optically Enhancing Silicon Photocathodes Doctoral thesis, Humboldt-Universität zu Berlin, Martina Schmid (Advisor), 2019 Gauri Mangalgiri BibTeX
DOI
Modeling and Simulation of Complex Processes
Directional emission of a deterministically fabricated quantum dot – Bragg reflection multi-mode waveguide system ACS Photonics, Vol.6, p. 2231, 2019 Paweł Mrowinski, Peter Schnauber, Philipp Gutsche, Arsenty Kaganskiy, Johannes Schall, Sven Burger, Sven Rodt, Stephan Reitzenstein BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Discerning the spatio-temporal disease patterns of surgically induced OA mouse models PLOS One, 14(4), 2019 Tobias Haase, Vikram Sunkara, Benjamin Kohl, Carola Meier, Patricia Bußmann, Jessica Becker, Michal Jagielski, Max von Kleist, Wolfgang Ertel BibTeX
DOI
Modeling and Simulation of Complex Processes
Dispersion-engineered nanocomposites enable achromatic diffractive optical elements Optica, Vol.6, p. 1031, 2019 Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker BibTeX
DOI
Modeling and Simulation of Complex Processes
EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma PLOS ONE, 14(1), 2019 Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad BibTeX
DOI
Modeling and Simulation of Complex Processes
Editorial: Special edition on probabilistic numerics Statistics and Computing, 29(6), pp. 1181-1183, 2019 Mark A. Girolami, Ilse C. F. Ipsen, Chris Oates, Art B. Owen, T. J. Sullivan BibTeX
DOI
Modeling and Simulation of Complex Processes
Efficient global sensitivity analysis for silicon line gratings using polynomial chaos Proc. SPIE, Vol.11057, p. 110570J, 2019 Nando Farchmin, Martin Hammerschmidt, Philipp-Immanuel Schneider, Matthias Wurm, Markus Bär, Sebastian Heidenreich BibTeX
DOI
Modeling and Simulation of Complex Processes
Finite Element Simulations of Optical Resonances in Dispersive Nanoresonators Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 699, 2019 Sven Burger, Felix Binkowski, Lin Zschiedrich BibTeX
Modeling and Simulation of Complex Processes
From ergodic infinite-time to finite-time transition path theory Master's thesis, Freie Universität Berlin, Péter Koltai, Christof Schütte (Advisors), 2019 Enric Ribera Borrell BibTeX
Modeling and Simulation of Complex Processes
From metastable to coherent sets - Time-discretization schemes Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol.29, pp. 012101-012101, 2019 (preprint available as ZIB-Report 17-74) Konstantin Fackeldey, Peter Koltai, Peter Nevir, Henning Rust, Axel Schild, Marcus Weber PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Fréchet differentiable drift dependence of Perron–Frobenius and Koopman operators for non-deterministic dynamics Nonlinearity, 32(11), pp. 4232-4257, 2019 Péter Koltai, Han Cheng Lie, Martin Plonka BibTeX
DOI
Modeling and Simulation of Complex Processes
Generalized Markov modeling of nonreversible molecular kinetics The Journal of Chemical Physics, 17(150), p. 174103, 2019 Bernhard Reuter, Konstantin Fackeldey, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Grazing incidence x-ray fluorescence based characterization of nanostructures for element sensitive profile reconstruction Proc. SPIE, Vol.11057, p. 110570M, 2019 Anna Andrle, Philipp Hönicke, Philipp-Immanuel Schneider, Yves Kayser, Martin Hammerschmidt, Sven Burger, Frank Scholze, Burkhard Beckhoff, Victor Soltwisch BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Hybrid Models and Simulations of Reaction-Diffusion Processes Master's thesis, Freie Universität Berlin, Frank Noe (Advisor), 2019 Margarita Kostré BibTeX
Modeling and Simulation of Complex Processes
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis BMC Bioinformatics, 20(1471-2105), 2019 Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria Peschutter, Heike Siebert, Annalisa Marsico BibTeX
DOI
Modeling and Simulation of Complex Processes
Improving Monolithic Perovskite/Silicon Tandem Solar Cells From an Optical Viewpoint OSA Advanced Photonics Congress, p. PM4C.2, OSA Technical Digest, 2019 Klaus Jäger, Marko Jošt, Johannes Sutter, Philipp Tockhorn, Eike Köhnen, David Eisenhauer, Phillip Manley, Steve Albrecht, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
In vitro and in silico modeling of cellular and matrix-related changes during the early phase of osteoarthritis BioRxiv, 2019 Marie-Christin Weber, Lisa Fischer, Alexandra Damerau, Igor Ponomarev, Moritz Pfeiffenberger, Timo Gaber, Sebastian Götschel, Jens Lang, Susanna Röblitz, Frank Buttgereit, Rainald Ehrig, Annemarie Lang BibTeX
DOI
Modeling and Simulation of Complex Processes
Influence of Ordinary Differential Equations on Neural Networks Bachelor's thesis, Freie Universität Berlin, Christof Schütte, Tim Conrad (Advisors), 2019 Felix Meitzner BibTeX
Modeling and Simulation of Complex Processes
Jarzynski's equality, fluctuation theorems, and variance reduction: Mathematical analysis and numerical algorithms Journal of Statistical Physics, 175(6), pp. 1214-1261, 2019 Carsten Hartmann, Christof Schütte, Wei Zhang BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Kernel methods for detecting coherent structures in dynamical data Chaos: An Interdisciplinary Journal of Nonlinear Science, 29(12), 2019 Stefan Klus, Brooke E. Husic, Mattes Mollenhauer, Frank Noe BibTeX
DOI
Modeling and Simulation of Complex Processes
Learning chemical reaction networks from trajectory data SIAM Journal on Applied Dynamical Systems (SIADS), 18(4), pp. 2000-2046, 2019 Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Light-matter Interaction in Optical Resonators: Spectral Expansion by Riesz Projection Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 1067, 2019 Lin Zschiedrich, Felix Binkowski, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Line Broadening Mechanisms in Hybrid Plasmonic Systems for Strong Coupling Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 704, 2019 Günter Kewes, Felix Binkowski, Sven Burger, Lin Zschiedrich, Felix Stete, Wouter Koopman, Matias Bargheer, Oliver Benson BibTeX
Modeling and Simulation of Complex Processes
Method for direct coupling of a semiconductor quantum dot to an optical fiber for single-photon source applications Opt. Express, Vol.27, p. 26772, 2019 Kinga Żołnacz, Anna Musiał, Nicole Srocka, Jan Große, Maximilian Schlösinger, Philipp-Immanuel Schneider, Oleh Kravets, Monika Mikulicz, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wójcik, Paweł Mergo, Kamil Dybka, Mariusz Dyrkacz, Michał Dłubek, Sven Rodt, Sven Burger, Lin Zschiedrich, Grzegorz Sęk, Stephan Reitzenstein, Wacław Urbańczyk BibTeX
DOI
Modeling and Simulation of Complex Processes
Modal analysis for nanoplasmonics with nonlocal material properties Phys. Rev. B, Vol.100, p. 155406, 2019 Felix Binkowski, Lin Zschiedrich, Martin Hammerschmidt, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Modeling of Drug Diffusion Based on Concentration Profiles in Healthy and Damaged Human Skin Biophysical Journal, 117(5), pp. 998-1008, 2019 Robert Schulz, Kenji Yamamoto, André Klossek, Fiorenza Rancan, Annika Vogt, Christof Schütte, Eckart Rühl, Roland R. Netz BibTeX
DOI
Modeling and Simulation of Complex Processes
Modeling of Multivalent Ligand-Receptor Binding Measured by kinITC Computation, 7(3), p. 46, 2019 Franziska Erlekam, Sinaida Igde, Susanna Röblitz, Laura Hartmann, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Multidimensional Approximation of Nonlinear Dynamical Systems Journal of Computational and Nonlinear Dynamics, 14(6), 2019 Patrick Gelß, Stefan Klus, Jens Eisert, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Mussel-glue inspired adhesives: A study on the relevance of L-Dopa and the function of the sequence at nanomaterial-peptide interfaces Advanced Materials Interfaces, 6(13), p. 1900501, 2019 Narendra Lagumaddepalli Venkatareddy, Patrick Wilke, Natalia Ernst, Justus Horch, Marcus Weber, Andre Dallmann, Hans G. Börner BibTeX
DOI
Modeling and Simulation of Complex Processes
Nanocomposites – A Route to better and smaller optical Elements? Optical Design and Fabrication 2019, p. OT2A.2, OSA Technical Digest, 2019 Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker BibTeX
DOI
Modeling and Simulation of Complex Processes
Nanooptische Simulationen für optoelektronische Anwendungen Photonik: Fachzeitschrift für die optischen Technologien, 2019(2), pp. 42-45, 2019 Christiane Becker, Sven Burger, Klaus Jäger BibTeX
Modeling and Simulation of Complex Processes
Nanophotonic Enhancement of Light Out-Coupling for Deep-UV LEDs The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 745, 2019 Phillip Manley, Martin Hammerschmidt, Sven Burger, Christiane Becker BibTeX
Modeling and Simulation of Complex Processes
Nanophotonic enhanced perovskite-silicon solar cell devices The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 858, 2019 Christiane Becker, Phillip Manley, Klaus Jäger, David Eisenhauer, Johannes Sutter, Steve Albrecht, Kaibo Zheng, Tonu Pullerits, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Numerical Investigation of Integrated Single-Photon Emitters in Low-Index-Contrast Waveguides Nanophotonics: Foundations & Applications, CSF Conference Book of Abstracts, Lukas Novotny, Romain Quidant (Eds.), p. B11, 2019 Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Numerical Investigation of Light Emission from Quantum Dots Embedded into On-Chip, Low Index Contrast Optical Waveguides Phys. Status Solidi B, Vol.256, p. 1800437, 2019 Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Numerical Studies of Integrated Single-Photon Emitters in Low-Index-Contrast Waveguides 7th International Workshop on Engineering of Quantum Emitter Properties (EQEP), Stephan Reitzenstein, Tobias Heindel (Eds.), p. 49, 2019 Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Numerical methods for simulation and optimization of the extraction efficiency from quantum-dot based single-photon emitters 7th International Workshop on Engineering of Quantum Emitter Properties (EQEP), Stephan Reitzenstein, Tobias Heindel (Eds.), p. 20, 2019 Sven Burger, Philipp-Immanuel Schneider, Theresa Höhne, Lin Zschiedrich BibTeX
Modeling and Simulation of Complex Processes
Numerical optimization of resonant nanophotonic devices The Seventh International School and Conference on Photonics (PHOTONICA Belgrade), Milica Matijević, Marko Krstić, Petra Beličev (Eds.), p. 10, 2019, ISBN: 978-86-7306-153-5 Felix Binkowski, Philipp-Immanuel Schneider, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Numerical optimization of resonant photonic devices Proc. SPIE, p. 1105702, Vol.11057, 2019 Martin Hammerschmidt, Lin Zschiedrich, Philipp-Immanuel Schneider, Felix Binkowski, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
On a Novel Approach for Global Optimization of Non-Convex Problems Master's thesis, Technische Universität Berlin, Konstantin Fackeldey (Advisor), 2019 Wilhelm Bender PDF
BibTeX
URN
Modeling and Simulation of Complex Processes
On intrinsic equivalences of the finite helical axis, the instantaneous helical axis, and the SARA approach. A mathematical perspective. Journal of Biomechanics, Vol.84, pp. 4-10, 2019 Rainald Ehrig, Markus O. Heller BibTeX
DOI
Modeling and Simulation of Complex Processes
On the Properties of the Reaction Counts Chemical Master Equation Entropy, 21(6), p. 607, 2019 Vikram Sunkara BibTeX
DOI
Modeling and Simulation of Complex Processes
Optimal Network Generation for the Simulation of Proton Transfer Processes Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 Marco Reidelbach BibTeX
Modeling and Simulation of Complex Processes
Parameter estimation of multivalent processes on ITC datasets Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 Max Zumbansen BibTeX
Modeling and Simulation of Complex Processes
Prediction and Analysis of Drugs Inducing Liver Injury (DILI) using ProTox-II Computational-Tool Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 Rascha Basaleh BibTeX
Modeling and Simulation of Complex Processes
Quasinormal mode solvers for resonators with dispersive materials J. Opt. Soc. Am. A, Vol.36, p. 686, 2019 P. Lalanne, W. Yan, A. Gras, C. Sauvan, J.-P. Hugonin, M. Besbes, G. Demésy, M. D. Truong, B. Gralak, F. Zolla, A. Nicolet, Felix Binkowski, Lin Zschiedrich, Sven Burger, J. Zimmerling, R. Remis, H. Paul Urbach, H. T. Liu, T. Weiss BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Reweighting methods for Molecular Dynamics Doctoral thesis, Freie Universität Berlin, Bettina G Keller, Marcus Weber (Advisors), 2019 Luca Donati BibTeX
DOI
URN
Modeling and Simulation of Complex Processes
SLCV – A Supervised Learning - Computer Vision combined strategy for automated muscle fibre detection in cross sectional images PeerJ, 2019 Anika Rettig, Tobias Haase, Alexandr Pletnyov, Benjamin Kohl, Wolfgang Ertel, Max von Kleist, Vikram Sunkara PDF
BibTeX
URN
DOI
Modeling and Simulation of Complex Processes
Serial synapse formation through filopodial competition for synaptic seeding factors Developmental Cell, 50(4), pp. 447-461, 2019 (preprint available as ZIB-Report 19-45) Mehmet Neset Ozel, Abhishek Kulkarni, Amr Hasan, Josephine Brummer, Marian Moldenhauer, Ilsa-Maria Daumann, Heike Wolfenberg, Vincent J. Dercksen, Ferdi Ridvan Kiral, Martin Weiser, Steffen Prohaska, Max von Kleist, Peter Robin Hiesinger PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Spectral Expansion of the Scattering Response of Resonant Nanostructures EOS Topical Meeting on Diffractive Optics, Kimmo Saastamoinen (Ed.), p. 1, 2019, ISBN: 978-952-68553-8-7 Felix Binkowski, Lin Zschiedrich, Philipp-Immanuel Schneider, Martin Hammerschmidt, Xavier Garcia Santiago, Fridtjof Betz, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Spectral resonance expansion by Riesz projections 14 th International Conference on Mathematical and Numerical Aspects of Wave Propagation Book of Abstracts, Manfred Kaltenbacher (Ed.), p. 234, 2019 Lin Zschiedrich, Felix Binkowski, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Strong convergence rates of probabilistic integrators for ordinary differential equations Statistics and Computing, 29(6), pp. 1265-1283, 2019 Han Cheng Lie, T. J. Sullivan, Andrew Stuart BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Structural characterization of synthetic peptides using electronspray ion mobility spectrometry and molecular dynamics simulations International Journal of Mass Spectrometry, Vol.436, pp. 108-117, 2019 José Villatoro, Marcus Weber, Martin Zühlke, Andreas Lehmann, Karl Zechiowski, Daniel Riebe, Toralf Beitz, Hans-Gerd Löhmannsröben, Oliver Kreuzer BibTeX
DOI
Modeling and Simulation of Complex Processes
Transformationsprodukte im Klärwerk: Mathematische Ansätze der Bewertung KA Korrespondenz Abwasser, Abfall, Vol.7, pp. 551-557, 2019 Marcus Weber BibTeX
Modeling and Simulation of Complex Processes
Uncertainty Quantification, 11-15 March 2019 Oberwolfach Reports, 16(1), pp. 695-772, Oliver Ernst, Fabio Nobile, Claudia Schillings, T. J. Sullivan (Eds.), 2019 BibTeX
DOI
Modeling and Simulation of Complex Processes
Using Gaussian process regression for efficient parameter reconstruction Proc. SPIE, Vol.10959, p. 1095911, 2019 Philipp-Immanuel Schneider, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
What you extract is what you see: Optimising the preparation of water and wastewater samples for in vitro bioassays Water Research, Vol.152, pp. 47-60, 2019 Aennes Abbas, Ilona Schneider, Anna Bollmann, Jan Funke, Jörg Oehlmann, Carsten Prasse, Ulrike Schulte-Oehlmann, Wolfram Seitz, Thomas Ternes, Marcus Weber, Henning Wesely, Martin Wagner BibTeX
DOI
Modeling and Simulation of Complex Processes
pKa of opioid ligands as a discriminating factor for side effects Scientific Reports, Vol.9, p. 19344, 2019 Giovanna Del Vecchio, Dominika Labuz, Julia Temp, Viola Seitz, Michael Kloner, Roger Negrete, Antonio Rodriguez-Gaztelumendi, Marcus Weber, Halina Machelska, Christoph Stein BibTeX
DOI
Modeling and Simulation of Complex Processes
2018
A combined approach for the analysis of biomolecules using IR-MALDI ion mobility spectrometry and molecular dynamics simulations of peptide ions in the gas phase Doctoral thesis, Universität Potsdam, Hans-Gerd Löhmannsröben (Advisor), 2018 José Villatoro BibTeX
Modeling and Simulation of Complex Processes
A kernel-based approach to molecular conformation analysis Journal of Chemical Physics, 149(24), 2018 Stefan Klus, Andreas Bittracher, Ingmar Schuster, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
A mathematical modelling approach to the insight of dynamic networks: Potassium homeostasis and glucose-insulin in dairy cows ADSA 2018 Annual Meeting, Vol.101 Suppl. 2, pp. 226-227, American Dairy Science Association, Journal of Dairy Science, 2018 Julia Plöntzke, Mascha Berg, Susanna Röblitz BibTeX
Modeling and Simulation of Complex Processes
A multiscale perturbation expansion approach for Markov state modeling of non-stationary molecular dynamics SIAM J. Multiscale Model. Simul., 16(4), pp. 1455-1485, 2018 (preprint available as ZIB-Report 17-49) Péter Koltai, Christof Schütte PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Absorption Enhancement for Ultra-Thin Solar Fuel Devices with Plasmonic Gratings ACS Appl. Energy Mater., Vol.1, p. 5810, 2018 Phillip Manley, Fatwa F. Abdi, Sean P. Berglund, A. T. M. Nazmul Islam, Sven Burger, Roel van de Krol, Martina Schmid BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
An AKAP-Lbc-RhoA interaction inhibitor promotes the translocation of aquaporin-2 to the plasma membrane of renal collecting duct principal cells PLOS ONE, 13(1), pp. e0191423-e0191423, 2018 Katharina Schrade, Jessica Tröger, Adeep Eldashan, Kerstin Zühlke, Kamal R. Abdul Azees, Jonathan M. Elkins, Martin Neuenschwander, Andreas Oder, Mohamed Elkewedi, Sarah Jaksch, Karsten Andrae, Jinliang Li, Jaoa Fernandes, Paul Markus Müller, Stephan Grunwald, Stephen F. Marino, Tanja Vukicevic, Jenny Eichhorst, Burkhard Wiesner, Marcus Weber, Michael Kapiloff, Oliver Rocks, Oliver Daumke, Thomas Wieland, Stefan Knapp, Jens Peter von Kries, Enno Klussmann BibTeX
DOI
Modeling and Simulation of Complex Processes
An automatic adaptive importance sampling algorithm for molecular dynamics in reaction coordinates SIAM Journal on Scientific Computing, 40(2), pp. A653-A670, 2018 (preprint available as ZIB-Report 17-09) Jannes Quer, Luca Donati, Bettina Keller, Marcus Weber PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Analysis of light-matter interaction of optical sources with dispersive nanoresonators via contour integration XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 40, 2018, ISBN: 978-3-921823-98-9 Felix Binkowski, Lin Zschiedrich, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Analysis of photonic crystals for interaction with near-surface emitters Doctoral thesis, Technische Universität Berlin, Bernd Rech, Christiane Becker (Advisors), 2018 Carlo Barth BibTeX
DOI
Modeling and Simulation of Complex Processes
Antireflective nanotextures for monolithic perovskite-silicon tandem solar cells Proc. SPIE, Vol.10688, p. 106880A, 2018 Klaus Jäger, Phillip Manley, Duote Chen, Philipp Tockhorn, David Eisenhauer, Grit Köppel, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Benchmarking five numerical simulation techniques for computing resonance wavelengths and quality factors in photonic crystal membrane line defect cavities Opt. Express, Vol.26, p. 11366, 2018 Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivanskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mork, Niels Gregersen BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Benchmarking state-of-the-art numerical simulation techniques for analyzing large photonic crystal membrane line defect cavities Proc. SPIE, Vol.10672, p. 106721C, 2018 Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko BibTeX
DOI
Modeling and Simulation of Complex Processes
Benchmarking state-of-the-art optical simulation methods for analyzing large nanophotonic structures XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 9, 2018, ISBN: 978-3-921823-98-9 Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Oleksiy S. Kim, Olav Breinbjerg, Fengwen Wang, Ole Sigmund, Aliaksandra Ivinskaya, Andrei Lavrinenko, Philipp Gutsche, Sven Burger, Teppo Häyrynen, Jesper Mørk BibTeX
Modeling and Simulation of Complex Processes
Chiral scatterers designed by Bayesian optimization J. Phys.: Conf. Ser., Vol.963, p. 012004, 2018 Philipp Gutsche, Philipp-Immanuel Schneider, Sven Burger, Manuel Nieto-Vesperinas BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Computing Personalised Treatments through In Silico Clinical Trials. A Case Study on Downregulation in Assisted Reproduction Experimental Evaluation of Algorithms for Solving Problems with Combinatorial Explosion, Workshop of the Federated Logic Conference 2018 (FLoC 2018), Oxford, pp. 1-16, 2018 Toni Mancini, Federico Mari, Annalisa Massini, Igor Melatti, Ivano Salvo, Stefano Sinisi, Enrico Tronci, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners BibTeX
DOI
Modeling and Simulation of Complex Processes
Correspondence of Trap Spaces in Different Models of Bioregulatory Networks SIAM Journal on Applied Dynamical Systems, 17(2), pp. 1742-1765, 2018 (preprint available as ZIB-Report 18-10) Robert Schwieger, Heike Siebert, Susanna Röblitz PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Data-driven model reduction and transfer operator approximation Journal of Nonlinear Science, 28(3), pp. 985-1010, 2018 Stefan Klus, Feliks Nüske, Peter Koltai, Hao Wu, Ioannis Kevrekidis, Christof Schütte, Frank Noé BibTeX
DOI
Modeling and Simulation of Complex Processes
Design rules for customizable optical materials based on nanocomposites Opt. Mater. Express, Vol.8, p. 3456, 2018 Daniel Werdehausen, Isabelle Staude, Sven Burger, Jörg Petschulat, Toralf Scharf, Thomas Pertsch, Manuel Decker BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Deterministic integration of quantum dots into on-chip multi-mode interference beamsplitters using in-situ electron beam lithography Nano Lett., Vol.18, p. 2336, 2018 Peter Schnauber, Johannes Schall, Samir Bounouar, Theresa Höhne, Suk-In Park, Geun-Hwan Ryu, Tobias Heindel, Sven Burger, Jin-Dong Song, Sven Rodt, Stephan Reitzenstein BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Efficient Stiff Integration of Density Driven Flow Problems ZIB-Report 18-54 Arne Nägel, Peter Deuflhard, Gabriel Wittum PDF
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Modeling and Simulation of Complex Processes
Efficient determination of bespoke optically active nanoparticle distributions J. Opt., Vol.20, p. 085003, 2018 Phillip Manley, Min Song, Sven Burger, Martina Schmid BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Efficient finite-element-based numerical modelling of large sub-wavelength patterned optical structures Proc. SPIE, Vol.10542, p. 105421G, 2018 Martin Hammerschmidt, Jakub Pabisiak, Ana Cristina Perez-Gea, Nicolas Julian, Sean Hon, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Enhanced photon-extraction efficiency from InGaAs/GaAs quantum dots in deterministic photonic structures at 1.3 μm fabricated by in-situ electron-beam lithography AIP Adv., Vol.8, p. 085205, 2018 Nicole Srocka, Anna Musiał, Philipp-Immanuel Schneider, Paweł Mrowiński, Paweł Holewa, Sven Burger, David Quandt, André Strittmatter, Sven Rodt, Stephan Reitzenstein, Grzegorz Sęk BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Equivalence of weak and strong modes of measures on topological vector spaces Inverse Problems, 34(11), p. 115013, 2018 Han Cheng Lie, T. J. Sullivan BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Erratum: Equivalence of weak and strong modes of measures on topological vector spaces (2018 Inverse Problems 34 115013) Inverse Problems, 34(12), p. 129601, 2018 Han Cheng Lie, T. J. Sullivan BibTeX
DOI
Modeling and Simulation of Complex Processes
Estimation of the infinitesimal generator by square-root approximation J. Phys.: Condens. Matter, 30(42), pp. 425201-425201, 2018 Luca Donati, Martin Heida, Bettina G. Keller, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Finite-Elemente-Techniken zur mechanischen Stabilitätsanalyse der Hyomandibula von Rochen Master's thesis, Beuth Hochschule für Technik Berlin, Daniel Baum, Ute Wagner (Advisors), 2018 Merlind Schotte BibTeX
Modeling and Simulation of Complex Processes
Follicular competition in cows: the selection of dominant follicles as a synergistic effect Journal of Mathematical Biology, 2018 (preprint available as ZIB-Report 17-21) Alexander Lange, Robert Schwieger, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz PDF (ZIB-Report)
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DOI
Modeling and Simulation of Complex Processes
Generalisierte Markov-Modellierung von Nichtgleichgewichtssystemen - Simulation und Modellierung der Amyloid-beta(1-40)-Konformationsdynamik unter Mikrowelleneinfluss Doctoral thesis, Universität Kassel, Martin Garcia (Advisor), 2018 Bernhard Reuter BibTeX
Modeling and Simulation of Complex Processes
Generalized Markov State Modeling Method for Nonequilibrium Biomolecular Dynamics: Exemplified on Amyloid β Conformational Dynamics Driven by an Oscillating Electric Field Journal of Chemical Theory and Computation, 14(7), pp. 3579-3594, 2018 Bernhard Reuter, Marcus Weber, Konstantin Fackeldey, Susanna Röblitz, Martin E. Garcia BibTeX
DOI
Modeling and Simulation of Complex Processes
Heuristic Modeling of Strong Coupling in Plasmonic Resonators ACS Photonics, Vol.5, p. 4089, 2018 Günter Kewes, Felix Binkowski, Sven Burger, Lin Zschiedrich, Oliver Benson BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Human mobility and innovation spreading in ancient times: a stochastic agent-based simulation approach EPJ Data Science, 7(1), 2018 Natasa Djurdjevac Conrad, Luzie Helfmann, Johannes Zonker, Stefanie Winkelmann, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Implications of PCCA+ in Molecular Simulation Computation, 6(1), p. 20, 2018 Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Implicit probabilistic integrators for ODEs Advances in Neural Information Processing Systems 31 (NIPS 2018), 2018 Onur Teymur, Han Cheng Lie, T. J. Sullivan, Ben Calderhead BibTeX
arXiv
Modeling and Simulation of Complex Processes
Importance Sampling for metastable dynamical systems in molecular dynamics Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2018 Jannes Quer BibTeX
Modeling and Simulation of Complex Processes
In silico Methods - Computational Alternatives to Animal Testing ALTEX, 35(1), pp. 126-128, 2018 Annemarie Lang, Andrea Volkamer, Laura Behm, Susanna Röblitz, Rainald Ehrig, Marlon Schneider, Lisbet Geris, Joerg Wichard, Frank Buttgereit BibTeX
DOI
Modeling and Simulation of Complex Processes
Light Management for Engineering Luminescence in Nanoscale Environments By Numerical Optimization The Electrochemical Society, Meeting Abstracts, p. 1164, Vol.16, 2018 Philipp-Immanuel Schneider, Xavier Garcia Santiago, Felix Binkowski, Philipp Gutsche, Theresa Höhne, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Light management with sinusoidal nanotextures Light, Energy and the Environment 2018, p. OT5C.5, OSA Technical Digest, 2018 Klaus Jäger, Phillip Manley, David Eisenhauer, Philipp Tockhorn, Johannes Sutter, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Lossy data compression reduces communication time in hybrid time-parallel integrators Comput. Vis. Sci., 19(1), pp. 19-30, 2018 (preprint available as ZIB-Report 17-25) Lisa Fischer, Sebastian Götschel, Martin Weiser PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations Journal of Chemical Physics, 148(21), 2018 Manuel Dibak, Mauricio J. del Razo, David de Sancho, Christof Schütte, Frank Noé BibTeX
DOI
Modeling and Simulation of Complex Processes
MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations Journal of Chemical Physics, 148(214107), 2018 Manuel Dibak, Mauricio J. del Razo, David De Sancho, Christof Schütte, Frank Noé BibTeX
DOI
Modeling and Simulation of Complex Processes
Machine learning classification for field distributions of photonic modes Commun. Phys., Vol.1, p. 58, 2018 Carlo Barth, Christiane Becker BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Mathematical modeling of the spreading of innovations in the ancient world eTopoi. Journal for Ancient Studies, Vol.7, 2018 Natasa Djurdjevac Conrad, Daniel Fuerstenau, Ana Grabundzija, Luzie Helfmann, Martin Park, Wolfram Schier, Brigitta Schütt, Christof Schütte, Marcus Weber, Niklas Wulkow, Johannes Zonker PDF
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DOI
Modeling and Simulation of Complex Processes
Mixed-Integer Programming for Cycle Detection in Non-reversible Markov Processes Multiscale Modeling and Simulation, 16(1), pp. 248-265, 2018 (preprint available as ZIB-Report 16-39) Jakob Witzig, Isabel Beckenbach, Leon Eifler, Konstantin Fackeldey, Ambros Gleixner, Andreas Grever, Marcus Weber PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Modelling of standard and specialty fibre-based systems using finite element methods Proc. SPIE, Vol.10683, p. 1068336, 2018 Natascia Castagna, Jacques Morel, Luc Testa, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Molecular Binding Kinetics of CYP P450 by Using the Infinitesimal Generator Approach Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2018 Paula Breitbach PDF
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Modeling and Simulation of Complex Processes
Molecular Dynamics vs. Stochastic Processes: Are We Heading Anywhere? Special Issue: Understanding Molecular Dynamics via Stochastic Processes, Entropy, 20(5), 2018 Giovanni Ciccotti, Mauro Ferrario, Christof Schütte PDF
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DOI
Modeling and Simulation of Complex Processes
Nanophotonic Light Management for Perovskite-Silicon Tandem Solar Cells J. Photonics Energy, Vol.8, p. 022601, 2018 Duote Chen, Phillip Manley, Philipp Tockhorn, David Eisenhauer, Grit Köppel, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker, Klaus Jäger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Nanophotonic enhanced two-photon excited photoluminescence of perovskite quantum dots ACS Photonics, Vol.5, p. 4668, 2018 Christiane Becker, Sven Burger, Carlo Barth, Phillip Manley, Klaus Jäger, David Eisenhauer, Grit Köppel, Pavel Chabera, Junsheng Chen, Kaibo Zheng, Tönu Pullerits BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
New Strategies in Conformation Dynamics Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2018 Martina Klimm BibTeX
Modeling and Simulation of Complex Processes
Novel relocation methods for automatic external defibrillator improve out-of-hospital cardiac arrest coverage under limited resources Resuscitation, pp. 83-89, 2018 Nicholas J. Tierney, Antonietta Mira, J. Jost Reinhold, Martin Weiser, Roman Burkart, Claudio Benvenuti, Angelo Auricchio BibTeX
DOI
Modeling and Simulation of Complex Processes
Numerical optimization of the extraction efficiency of a quantum-dot based single-photon emitter into a single-mode fiber Opt. Express, Vol.26, p. 8479, 2018 Philipp-Immanuel Schneider, Nicole Srocka, Sven Rodt, Lin Zschiedrich, Stephan Reitzenstein, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
On Intrinsic Dimension Estimation and Minimal Diffusion Maps Embeddings of Point Clouds Master's thesis, Freie Universität Berlin, Ralf Banisch (Advisor), 2018 Johannes von Lindheim BibTeX
Modeling and Simulation of Complex Processes
On accurate simulations of thin-film solar cells with a thick glass superstrate Opt. Express, Vol.26, p. A99, 2018 Klaus Jäger, Grit Köppel, Martin Hammerschmidt, Sven Burger, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Online measurement of optical fibre geometry during manufacturing Proc. SPIE, Vol.10683, p. 1068318, 2018 Maksim Shpak, Sven Burger, Ville Byman, Kimmo Saastamoinen, Mertsi Haapalainen, Antti Lassila BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Opioid receptor signaling, analgesic and side effects induced by a computationally designed pH-dependent agonist Scientific Reports, Vol.8, p. 8965, 2018 Viola Spahn, Giovanna Del Vecchio, Antonio Rodriguez-Gaztelumendi, Julia Temp, Dominika Labuz, Michael Kloner, Marco Reidelbach, Halina Machelska, Marcus Weber, Christoph Stein BibTeX
Modeling and Simulation of Complex Processes
Optical Chirality of Time-Harmonic Wavefields for Classification of Scatterers Sci. Rep., Vol.8, p. 9416, 2018 Philipp Gutsche, Manuel Nieto-Vesperinas BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Optimal Design of Experiments for Estimating the Time of Death in Forensic Medicine Inverse Problems, 34(12), p. 125005, 2018 (preprint available as ZIB-Report 18-08) Martin Weiser, Yvonne Freytag, Bodo Erdmann, Michael Hubig, Gita Mall PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Optimal data-driven estimation of generalized Markov state models for non-equilibrium dynamics Computation, 6(1), 2018 Peter Koltai, Hao Wu, Frank Noé, Christof Schütte PDF
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DOI
Modeling and Simulation of Complex Processes
Optimization of nanostructured high efficiency perovskite/c-Si tandem solar cells via numerical simulation Proc. SPIE, p. 107310B, Vol.10731, 2018 Phillip Manley, Klaus Jäger, Philipp Tockhorn, Sven Burger, Steve Albrecht, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Optimization of quantum optical devices with machine learning XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 6, 2018, ISBN: 978-3-921823-98-9 Philipp-Immanuel Schneider, Lin Zschiedrich, Xavier Garcia Santiago, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Parallel-in-Time for Parabolic Optimal Control Problems Using PFASST Domain Decomposition Methods in Science and Engineering XXIV, pp. 363-371, Springer: Cham, 2018 (preprint available as ZIB-Report 17-51) Sebastian Götschel, Michael L. Minion PDF (ZIB-Report)
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DOI
Modeling and Simulation of Complex Processes
Polarization-Dependent Second Harmonic Diffraction from Resonant GaAs Metasurfaces ACS Photonics, Vol.5, p. 1786, 2018 Franz Löchner, Anna Fedotova, Sheng Liu, Gordon Keeler, Gregory Peake, Sina Saravi, Maxim Shcherbakov, Sven Burger, Andrey Fedyanin, Igal Brener, Thomas Pertsch, Frank Setzpfandt, Isabelle Staude BibTeX
DOI
Modeling and Simulation of Complex Processes
Prediction of perturbed proton transfer networks PLoS ONE, 13(12), pp. e0207718-e0207718, 2018 Marco Reidelbach, Marcus Weber, Petra Imhof BibTeX
DOI
Modeling and Simulation of Complex Processes
Quasi-invariance of countable products of Cauchy measures under non-unitary dilations Electronic Communications in Probability, 23(8), pp. 1-6, 2018 Han Cheng Lie, T. J. Sullivan BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Random forward models and log-likelihoods in Bayesian inverse problems ZIB-Report 18-03 Han Cheng Lie, T. J. Sullivan, Aretha Teckentrup PDF
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URN
arXiv
DOI
Modeling and Simulation of Complex Processes
Riesz-projection-based theory of light-matter interaction in dispersive nanoresonators Phys. Rev. A, Vol.98, p. 043806, 2018 Lin Zschiedrich, Felix Binkowski, Niko Nikolay, Oliver Benson, Günter Kewes, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Rigorous wave-optical treatment of photon recycling in thermodynamics of photovoltaics: Perovskite thin-film solar cells Phys. Rev. B, Vol.98, p. 075141, 2018 Muluneh G. Abebe, Aimi Abass, Guillaume Gomard, Lin Zschiedrich, Uli Lemmer, Bryce S. Richards, Carsten Rockstuhl, Ulrich W. Paetzold BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Role of Counterions in Molecularly Imprinted Polymers for Anionic Species Langmuir, 34(23), pp. 6963-6975, 2018 Sabine Wagner, Carlos Zapata, Wei Wan, Kornelia Gawlitza, Marcus Weber, Knut Rurack BibTeX
DOI
Modeling and Simulation of Complex Processes
Shape design of a reflecting surface using Bayesian Optimization J. Phys.: Conf. Ser., Vol.963, p. 012003, 2018 Xavier Garcia Santiago, Philipp-Immanuel Schneider, Carsten Rockstuhl, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Solving inverse problems appearing in design and metrology of diffractive optical elements by using Bayesian optimization Proc. SPIE, Vol.10694, p. 1069407, 2018 Martin Hammerschmidt, Philipp-Immanuel Schneider, Xavier Garcia Santiago, Lin Zschiedrich, Martin Weiser, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Spectral Clustering for Non-Reversible Markov Chains Computational and Applied Mathematics, 37(5), pp. 6376-6391, 2018 (preprint available as ZIB-Report 18-48) Konstantin Fackeldey, Alexander Sikorski, Marcus Weber PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Statistical analysis of the first passage path ensemble of jump processes Journal of Statistical Physics, Vol.170, pp. 809-843, 2018 Max von Kleist, Christof Schütte, Wei Zhang BibTeX
DOI
Modeling and Simulation of Complex Processes
Stochastic Modeling of Interacting Agent Systems Master's thesis, Freie Universität Berlin, Christof Schütte, Natasa Djurdjevac Conrad (Advisors), 2018 Luzie Helfmann PDF
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Modeling and Simulation of Complex Processes
Supplementary: Implications of PCCA+ in Molecular Simulation 2018 Marcus Weber BibTeX
Modeling and Simulation of Complex Processes
Tensor-based dynamic mode decomposition Nonlinearity, 31(7), 2018 Stefan Klus, Patrick Gelß, Sebastian Peitz, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
The Grand Four. Affine Invariant Globalizations of Newton's Method Vietnam Journal of Mathematics, 46(4), pp. 761-777, 2018 Peter Deuflhard BibTeX
DOI
Modeling and Simulation of Complex Processes
Theoretically optimal inexact SDC methods Communications in Applied Mathematics and Computational Science, pp. 53-86, 2018 (preprint available as ZIB-Report 16-52) Martin Weiser, Sunayana Ghosh PDF (ZIB-Report)
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DOI
Modeling and Simulation of Complex Processes
Tracking online topics over time: understanding dynamic hashtag communities Computational Social Networks, 5(9), 2018 (accepted for publication) Philipp Lorenz-Spreen, Frederik Wolf, Jonas Braun, Gourab Ghoshal, Natasa Djurdjevac Conrad, Philipp Hövel BibTeX
DOI
Modeling and Simulation of Complex Processes
Transformationsprodukte im Klärwerk: Mathematische Ansätze der Bewertung KA Korrespondenz Abwasser, Abfall, 2018 (accepted for publication) Marcus Weber BibTeX
Modeling and Simulation of Complex Processes
Transition manifolds of complex metastable systems: Theory and data-driven computation of effective dynamics Jounal of Nonlinear Science, 28(2), pp. 471-512, 2018 (preprint available as ZIB-Report 17-22) Andreas Bittracher, Péter Koltai, Stefan Klus, Ralf Banisch, Michael Dellnitz, Christof Schütte PDF (ZIB-Report)
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DOI
Modeling and Simulation of Complex Processes
Uncertainty in Temperature-Based Determination of Time of Death Heat and Mass Transfer, 54(9), pp. 2815-2826, 2018 (preprint available as ZIB-Report 17-18) Martin Weiser, Bodo Erdmann, Sebastian Schenkl, Holger Muggenthaler, Michael Hubig, Gita Mall, Stefan Zachow PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Using effective medium theories to design tailored nanocomposite materials for optical systems Proc. SPIE, p. 107450H, Vol.10745, 2018 Daniel Werdehausen, Isabelle Staude, Sven Burger, Jörg Petschulat, Toralf Scharf, Thomas Pertsch, Manuel Decker BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Validation of quasi-normal modes and of constant-flux modes for computing fundamental resonances of VCSELs Proc. SPIE, Vol.10682, p. 106821U, 2018 Theresa Höhne, Lin Zschiedrich, Nasibeh Haghighi, James A. Lott, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Which Computational Methods Are Good for Analyzing Large Photonic Crystal Membrane Cavities? 20th International Conference on Transparent Optical Networks (ICTON), 2018 Radu Malureanu, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mørk, Niels Gregersen BibTeX
DOI
Modeling and Simulation of Complex Processes
2017
A dynamic model to simulate potassium balance in dairy cows Journal of Dairy Science, 100(12), pp. 9799-9814, 2017 (preprint available as ZIB-Report 17-47) Mascha Berg, Julia Plöntzke, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
A mathematical framework for predicting lifestyles of viral pathogens Modelling Biological Evolution 2017: Developing Novel Approaches, 2017 Alexander Lange BibTeX
Modeling and Simulation of Complex Processes
A nontoxic pain killer designed by modeling of pathological receptor conformations Science, 355(6328), pp. 966-969, 2017 Viola Spahn, Giovanna Del Vecchio, Dominika Labuz, Antonio Rodriguez-Gaztelumendi, N. Massaly, Julia Temp, Vedat Durmaz, P. Sabri, Marco Reidelbach, Halina Machelska, Marcus Weber, Christoph Stein BibTeX
DOI
Modeling and Simulation of Complex Processes
Accurate optical simulations of periodic nanostructures on a thick glass substrate 29th Workshop on Quantum Solar Energy Conversion - (QUANTSOL), 2017 Klaus Jäger, Grit Köppel, Martin Hammerschmidt, Sven Burger, Christiane Becker PDF
BibTeX
Modeling and Simulation of Complex Processes
Adaptive Algorithms for Optimal Hip Implant Positioning PAMM, 17(1), pp. 203-204, 2017 Marian Moldenhauer, Martin Weiser, Stefan Zachow BibTeX
DOI
Modeling and Simulation of Complex Processes
An Information-Theoretic Empirical Bayes Method and its Application to a Systems Biology Model Master's thesis, Freie Universität Berlin, Susanna Röblitz (Advisor), 2017 Alexander Sikorski PDF
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Modeling and Simulation of Complex Processes
An affine covariant composite step method for optimization with PDEs as equality constraints Optimization Methods and Software, 32(5), pp. 1132-1161, 2017 (preprint available as ZIB-Report 15-09) Lars Lubkoll, Anton Schiela, Martin Weiser PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Automatic CT-based finite element model generation for temperature-based death time estimation: feasibility study and sensitivity analysis International Journal of Legal Medicine, 131(3), pp. 699-712, 2017 Sebastian Schenkl, Holger Muggenthaler, Michael Hubig, Bodo Erdmann, Martin Weiser, Stefan Zachow, Andreas Heinrich, Felix Victor Güttler, Ulf Teichgräber, Gita Mall BibTeX
DOI
Modeling and Simulation of Complex Processes
Benchmarking five computational methods for analyzing large photonic crystal membrane cavities Numerical Simulation of Optoelectronic Devices (NUSOD), p. 89, IEEE, 2017 Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Teppo Häyrynen, Andrei Lavrinenko, Jesper Moerk, Fengwen Wang, Ole Sigmund, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Philipp Gutsche, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
Capturing the Dynamics of Hashtag-Communities International Workshop on Complex Networks and their Applications, pp. 401-413, 2017 Philipp Lorenz, Frederik Wolf, Jonas Braun, Natasa Djurdjevac Conrad, Philipp Hövel BibTeX
DOI
Modeling and Simulation of Complex Processes
Chiral Nanophotonics: Theory and Simulation Doctoral Summer School on Nanophotonics and Metamaterials, ITMO University, 2017 Philipp Gutsche, Manuel Nieto-Vesperinas, Raquel Mäusle, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Comparison of five computational methods for computing Q factors in photonic crystal membrane cavities 19th International Conference on Transparent Optical Networks (ICTON), 2017 Andrey Novitsky, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mørk, Niels Gregersen BibTeX
DOI
Modeling and Simulation of Complex Processes
Comparison of five numerical methods for computing quality factors and resonance wavelengths in photonic crystal membrane cavities CLEO/Europe-EQEC, 2017 Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Oleksiy S. Kim, Olav Breinbjerg, Fengwen Wang, Ole Sigmund, Aliaksandra Ivinskaya, Andrei Lavrinenko, Philipp Gutsche, Sven Burger, Teppo Häyrynen, Jesper Merk BibTeX
DOI
Modeling and Simulation of Complex Processes
Computing the minimal rebinding effect for nonreversible processes Master's thesis, Freie Universität Berlin, Marcus Weber, Konstantin Fackeldey (Advisors), 2017 Susanne Röhl PDF
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Modeling and Simulation of Complex Processes
Data-driven Computation of Molecular Reaction Coordinates ZIB-Report 17-77 Andreas Bittracher, Ralf Banisch, Christof Schütte PDF
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Modeling and Simulation of Complex Processes
Determining the material parameters for the reconstruction of defects in carbon fiber reinforced polymers from data measured by flash thermography AIP Conference Proceedings, Vol.1806, 2017 Jan Müller, Sebastian Götschel, Christiane Maierhofer, Martin Weiser BibTeX
DOI
Modeling and Simulation of Complex Processes
Eigendecompositions of Transfer Operators in Reproducing Kernel Hilbert Spaces Journal of Machine Learning Research, 2017 (under review) Stefan Klus, Ingmar Schuster, Krikamol Muandet BibTeX
arXiv
Modeling and Simulation of Complex Processes
Eigenvalues of non-reversible Markov chains – A case study ZIB-Report 17-13 Marcus Weber PDF
BibTeX
URN
Modeling and Simulation of Complex Processes
Exact active subspace Metropolis–Hastings, with applications to the Lorenz-96 system 2017 Ingmar Schuster, Paul Constantine, T. J. Sullivan BibTeX
arXiv
Modeling and Simulation of Complex Processes
Finding Metastabilities in Reversible Markov Chains based on Incomplete Sampling: Case of Molecular Simulation Special Matrices, pp. 73-81, 2017 Konstantin Fackeldey, Amir Niknejad, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Fundamentals and Applications of an Optical Theorem for Chiral Optical Fields 4th International Conference on Optical Angular Momentum, 2017 Philipp Gutsche, Sven Burger, Manuel Nieto-Vesperinas BibTeX
Modeling and Simulation of Complex Processes
GenPCCA -- Markov State Models for Non-Equilibrium Steady States Big data clustering: Data preprocessing, variable selection, and dimension reduction. WIAS Report No. 29, pp. 70-80, 2017 Konstantin Fackeldey, Marcus Weber BibTeX
DOI
Modeling and Simulation of Complex Processes
Global optimization of complex optical structures using Bayesian optimization based on Gaussian processes Proc. SPIE, Vol.10335, p. 103350O, 2017 Philipp-Immanuel Schneider, Xavier Garcia Santiago, Carsten Rockstuhl, Sven Burger BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Highly Transmittive Broadband Dielectric Nanoholes CLEO, p. JTu5A.117, OSA Tech. Dig., 2017 Gauri Mangalgiri, Makars Šiškins, Alina Arslanova, Martin Hammerschmidt, Phillip Manley, Wiebke Riedel, Martina Schmid BibTeX
DOI
Modeling and Simulation of Complex Processes
Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ZIB-Report 17-29) Stefanie Winkelmann, Christof Schütte PDF
PDF (ZIB-Report)
BibTeX
DOI
Modeling and Simulation of Complex Processes
Importance sampling in path space for diffusion processes with slow-fast variables Probability Theory and Related Fields, pp. 1-52, 2017 Carsten Hartmann, Christof Schütte, Marcus Weber, Wei Zhang BibTeX
DOI
Modeling and Simulation of Complex Processes
In silico cytotoxicity assessment on cultured rat intestinal cells deduced from cellular impedance measurements Toxicology in Vitro, Vol.41, pp. 179-188, 2017 (preprint available as ZIB-Report 17-08) Pooja Gupta, Annika Gramatke, Ralf Einspanier, Christof Schütte, Max von Kleist, Jutta Sharbati PDF (ZIB-Report)
BibTeX
Modeling and Simulation of Complex Processes
Increased fluorescence of PbS quantum dots in photonic crystals by excitation enhancement Appl. Phys. Lett., Vol.111, p. 031111, 2017 Carlo Barth, Sebastian Roder, Daniel Brodoceanu, Tobias Kraus, Martin Hammerschmidt, Sven Burger, Christiane Becker BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Kernel Sequential Monte Carlo Joint European Conference on Machine Learning and Knowledge Discovery in Databases, pp. 390-409, 2017 Ingmar Schuster, Heiko Strathmann, Brooks Paige, Dino Sejdinovic BibTeX
DOI
Modeling and Simulation of Complex Processes
Lack of association between female hormone levels and visuospatial working memory, divided attention and cognitive bias across two consecutive menstrual cycles Front. Behav. Neurosci., 2017 Brigitte Leeners, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Lanja Saleh, K. Spanhaus, Cordula Schippert, Y. Zhang, M. P. Hengartner BibTeX
DOI
Modeling and Simulation of Complex Processes
Linear Precision Glycomacromolecules with Varying Interligand Spacing and Linker Functionalities Binding to Concanavalin A and the Bacterial Lectin FimH Marcomolecular Bioscience, 17(12), p. 1700198, 2017 Sinaida Igde, Susanna Röblitz, Anne Müller, Katharina Kolbe, Sophia Boden, Claudia Fessele, Thisbe Lindhorst, Marcus Weber, Laura Hartmann BibTeX
DOI
Modeling and Simulation of Complex Processes
Markov Control with Rare State Observation: Average Optimality Markov Processes and Related Fields, Vol.23, pp. 1-34, 2017 (preprint available as ZIB-Report 16-59) Stefanie Winkelmann PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Measuring the electromagnetic chirality of 2D arrays under normal illumination Opt. Lett., Vol.42, p. 4075, 2017 Xavier Garcia Santiago, Sven Burger, Carsten Rockstuhl, Ivan Fernandez-Corbaton BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Modelling the Spread of Innovations by a Markov Process in a Bayesian Framework Master's thesis, Freie Universität Berlin, Christof Schütte, Marcus Weber (Advisors), 2017 Niklas Wulkow PDF
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Modeling and Simulation of Complex Processes
Moleküldynamik-Simulation via eines Faltungsansatzes im Potential Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017 Lisa Brust PDF
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Modeling and Simulation of Complex Processes
Negative affect is unrelated to fluctuations in hormone levels across the menstrual cycle: evidence from a multisite observational study across two successive cycles Journal of Psychosomatic Research, Vol.99, pp. 21-27, 2017 Michael Hengartner, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Rainald Ehrig, Lanja Saleh, Katharina Spanaus, Cordula Schippert, Yuanyuan Zhang, Brigitte Leeners BibTeX
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Modeling and Simulation of Complex Processes
Non-Negative Matrix Factorization for Raman Data Spectral Analysis Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017 Jonas Röhm PDF
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Modeling and Simulation of Complex Processes
On the convergence behavior of spectral deferred correction methods for convection-diffusion equations Master's thesis, Technische Universität Berlin, Jörg Liesen, Martin Weiser (Advisors), 2017 (preprint available as ZIB-Report 17-53) Felix Binkowski PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
On the convergence of inexact time parallel time integration Master's thesis, Technische Universität Berlin, Martin Weiser, Kersten Schmidt (Advisors), 2017 Lisa Fischer BibTeX
Modeling and Simulation of Complex Processes
Optical simulations of advanced light management for liquid-phase crystallized silicon thin-film solar cells Proc. SPIE, Vol.10356, p. 103560F, 2017 Klaus Jäger, Grit Köppel, David Eisenhauer, Duote Chen, Martin Hammerschmidt, Sven Burger, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Optimal Experimental Design to Estimate the Time of Death in a Bayesian Context Master's thesis, Technische Universität Berlin, Martin Weiser, Dietmar Hömberg (Advisors), 2017 (preprint available as ZIB-Report 17-14) Yvonne Freytag PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Photonics Handbook of Optoelectronic Device Modeling and Simulation, Joachim Piprek (Ed.), CRC Press, 2017, ISBN: 9781498749381 Frank Schmidt BibTeX
Modeling and Simulation of Complex Processes
Probabilistic Numerical Methods for PDE-constrained Bayesian Inverse Problems Proceedings of the 36th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, pp. 060001-1-060001-8, Vol.1853, AIP Conference Proceedings, 2017 Jon Cockayne, Chris Oates, T. J. Sullivan, Mark Girolami BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Quantifying parameter uncertainties in optical scatterometry using Bayesian inversion Proc. SPIE, Vol.10330, p. 1033004, 2017 (preprint available as ZIB-Report 17-37) Martin Hammerschmidt, Martin Weiser, Xavier Garcia Santiago, Lin Zschiedrich, Bernd Bodermann, Sven Burger PDF (ZIB-Report)
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arXiv
Modeling and Simulation of Complex Processes
Reliable approximation of long relaxation timescales in molecular dynamics Entropy, 19(7), 2017 (preprint available as ZIB-Report 17-19) Wei Zhang, Christof Schütte PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Resonant cavity light–emitting diodes based on dielectric passive cavity structures Proc. SPIE, Vol.10124, p. 101240O, 2017 Nikolay Ledentsov, Jr., Vitaly Shchukin, Jörg-R. Kropp, Lin Zschiedrich, Frank Schmidt, Nikolay Ledentsov, Jr. BibTeX
DOI
Modeling and Simulation of Complex Processes
Set-Free Markov State Model Building Journal of Chemical Physics, 146(12), 2017 (preprint available as ZIB-Report 17-10) Marcus Weber, Konstantin Fackeldey, Christof Schütte PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Simulation, Identification and Statistical Variation in Cardiovascular Analysis (SISCA) - a Software Framework for Multi-compartment Lumped Modeling Computers in Biology and Medicine, Vol.87, pp. 104-123, 2017 Rudolf Huttary, Leonid Goubergrits, Christof Schütte, Stefan Bernhard BibTeX
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Modeling and Simulation of Complex Processes
Smooth anti-reflective three-dimensional textures for liquid phase crystallized silicon thin-film solar cells on glass Sci. Rep., Vol.7, p. 2658, 2017 David Eisenhauer, Grit Köppel, Klaus Jäger, Duote Chen, Oleksandra Shargaieva, Paul Sonntag, Daniel Armkreutz, Bernd Rech, Christiane Becker BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Some connections between importance sampling and enhanced sampling methods in molecular dynamics Journal of Chemical Physics, 2017 (accepted for publication, preprint available as ZIB-Report 17-30) Jannes Quer, Han Cheng Lie PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data BMC Bioinfomatics, 18(160), 2017 Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Benedikt Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte BibTeX
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Modeling and Simulation of Complex Processes
Spectral Deferred Correction methods for adaptive electro-mechanical coupling in cardiac simulation G. Russo et al.(eds.) Progress in Industrial Mathematics at ECMI 2014, pp. 321-328, 2017 (preprint available as ZIB-Report 14-22) Martin Weiser, Simone Scacchi PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Square Root Approximation und statistische Umgewichtungstechnik für das Faltungsverhalten von Polymerbürsten Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017 Oleksandra Makarenko PDF
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Modeling and Simulation of Complex Processes
Thermodynamics of Photon Recycling in Four Terminal Perovskite/si Tandem Solar Cells Optical Nanostructures and Advanced Materials for Photovoltaics, p. PM4A.2, 2017 Muluneh G. Abebe, Guillaume Gomard, Lin Zschiedrich, Carsten Rockstuhl, Ulrich W. Paetzold, Aimi Abass BibTeX
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Modeling and Simulation of Complex Processes
Thermografie mit optimierter Anregung für die quantitative Untersuchung von Delaminationen in kohlenstofffaserverstärkten Kunststoffen NDT.net Proc. DGZfP 2017, 2017 Jan Müller, Sebastian Götschel, Martin Weiser, Christiane Maierhofer BibTeX
Modeling and Simulation of Complex Processes
Three-body effects in triplets of capped gold nanocrystals Molecular Physics, Vol.115, pp. 1031-1040, 2017 Gernot Bauer, Nadezhda Gribova, Alexander Lange, Christian Holm, Joachim Gross BibTeX
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Modeling and Simulation of Complex Processes
Utilizing hitting times for finding metastable sets in non-reversible Markov chains Journal of Comp. Dynamics, 2017 (under review, preprint available as ZIB-Report 14-32) S. Rüdrich, Marco Sarich, Christof Schütte PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Variational characterization of free energy: theory and algorithms Entropy, 19(11), 2017 (preprint available as ZIB-Report 17-52) Carsten Hartmann, Lorenz Richter, Christof Schütte, Wei Zhang PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Well-posed Bayesian inverse problems and heavy-tailed stable quasi-Banach space priors Inverse Problems and Imaging, 11(5), pp. 857-874, 2017 (preprint available as ZIB-Report 16-30) T. J. Sullivan PDF (ZIB-Report)
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arXiv
Modeling and Simulation of Complex Processes
Well-posedness of Bayesian inverse problems in quasi-Banach spaces with stable priors 88th Annual Meeting of the International Association of Applied Mathematics and Mechanics (GAMM), Weimar 2017, pp. 871-874, 17(1), Proceedings in Applied Mathematics and Mechanics, 2017 T. J. Sullivan BibTeX
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arXiv
Modeling and Simulation of Complex Processes
2016
A Two Dimensional Fiber Grating Coupler on SOI for Mode Division Multiplexing IEEE Photon. Technol. Lett., Vol.28, p. 1241, 2016 Benjamin Wohlfeil, Georg Rademacher, Christos Stamatiadis, Karsten Voigt, Lars Zimmermann, Klaus Petermann BibTeX
DOI
Modeling and Simulation of Complex Processes
A novel method for undisturbed long-term observation of the honey bee (Apis mellifera) behaviour – illustrated by the hygienic behaviour towards Varroa infestation Journal of Apicultural Research, Vol.54(5), pp. 541-547, 2016 Kaspar Bienefeld, Fred Zautke, Pooja Gupta BibTeX
Modeling and Simulation of Complex Processes
Adaptive importance sampling via minimization of estimators of cross-entropy, mean square and inefficiency constants Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 Tomasz Badowski BibTeX
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Modeling and Simulation of Complex Processes
Algorithmic approaches to the change-point problem for ovulation detection in the human menstrual cycle Bachelor's thesis, Freie Universität Berlin, Susanna Röblitz, Marcus Weber (Advisors), 2016 Felicia Burtscher BibTeX
Modeling and Simulation of Complex Processes
Allosteric and Chelate Cooperativity in Divalent Crown Ether–Ammonium Complexes with Strong Binding Enhancements Chem. Eur. J., 22(43), pp. 15475-15484, 2016 Larissa K. S. Krebek, von, Andreas J. Achazi, Marthe Solleder, Marcus Weber, Beate Paulus, Christoph A. Schalley BibTeX
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Modeling and Simulation of Complex Processes
An integrative approach for model driven computation of treatments in reproductive medicine BIOMAT - Proceedings of the 15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2016 (preprint available as ZIB-Report 16-04) Rainald Ehrig, Thomas Dierkes, Stefan Schäfer, Susanna Röblitz, Enrico Tronci, Toni Mancini, Ivano Salvo, Vadim Alimguzhin, Federico Mari, Igor Melatti, Annalisa Massini, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille, Brigitte Leeners PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Atomistic Binding Free Energy Estimations for Biological Host–Guest Systems Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016 Vedat Durmaz BibTeX
Modeling and Simulation of Complex Processes
Bright Single-Photon Sources Based on Anti-Reflection Coated Deterministic Quantum Dot Microlenses Technologies, 4(1), p. 1, 2016 Peter Schnauber, Alexander Thoma, Christoph V. Heine, Alexander Schlehahn, Liron Gantz, Manuel Gschrey, Ronny Schmidt, Caspar Hopfmann, Benjamin Wohlfeil, Jan-Hindrick Schulze, Andre Strittmatter, Tobias Heindel, Sven Rodt, Ulrike Woggon, David Gershoni, Stephan Reitzenstein BibTeX
DOI
Modeling and Simulation of Complex Processes
Cameron--Martin theorems for sequences of Cauchy-distributed random variables arXiv, p. 1608.03784, 2016 Han Cheng Lie, T. J. Sullivan BibTeX
arXiv
Modeling and Simulation of Complex Processes
Cameron--Martin theorems for sequences of Cauchy-distributed random variables ZIB-Report 16-40 Han Cheng Lie, T. J. Sullivan PDF
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Modeling and Simulation of Complex Processes
Circular polarization phenomena in chiral nano-optical devices Light, Energy and the Environment 2016, p. JW4A.4, OSA Technical Digest, 2016 Philipp Gutsche, Raquel Mäusle, Sven Burger BibTeX
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Modeling and Simulation of Complex Processes
Comparison of four computational methods for computing Q factors and resonance wavelengths in photonic crystal membrane cavities Proceedings of the 7th International Conference on Metamaterials, Photonic Crystals and Plasmonics, 2016 Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Sven Burger, Philipp Gutsche, Oleksiy S. Kim, Olav Breinbjerg, Ole Sigmund, Jesper Mork, Niels Gregersen BibTeX
Modeling and Simulation of Complex Processes
Computation Schemes for Transfer Operators Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016 Adam Nielsen BibTeX
Modeling and Simulation of Complex Processes
Correlated diffuse x-ray scattering from periodically nanostructured surfaces Phys. Rev. B, Vol.94, p. 035419, 2016 Victor Soltwisch, Anton Haase, Jan Wernecke, Jürgen Probst, Max Schoengen, Sven Burger, Michael Krumrey, Frank Scholze BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Coupling of Monodomain and Eikonal Models for Cardiac Electrophysiology Master's thesis, Freie Universität Berlin, Martin Weiser (Advisor), 2016 (preprint available as ZIB-Report 16-50) Adrian Sali PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Determining 2D photonic crystal geometries from reflectance spectra with a reduced basis method Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 281, 2016, ISBN: 978-1-5108-4796-5 Martin Hammerschmidt, Carlo Barth, Sven Burger, Christiane Becker, Frank Schmidt BibTeX
Modeling and Simulation of Complex Processes
Direct Evidence of the Leaky Emission in Oxide-Confined Vertical Cavity Lasers IEEE J. Quant. Electron., 52(3), p. 2400207, 2016 Nikolay Ledentsov, Jr., Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Sven Burger, Frank Schmidt BibTeX
DOI
Modeling and Simulation of Complex Processes
Direct visualization of the in-plane leakage of high-order transverse modes in vertical-cavity surface-emitting lasers mediated by oxide-aperture engineering Proc. SPIE, Vol.9766, p. 976608, 2016 Nikolay Ledentsov, Jr., Vitaly Shchukin, Jörg-R. Kropp, Sven Burger, Frank Schmidt, Nikolay Ledentsov, Jr. BibTeX
DOI
Modeling and Simulation of Complex Processes
Effective dynamics along given reaction coordinates, and reaction rate theory Faraday Discussions, pp. 365-394, 2016 (preprint available as ZIB-Report 16-35) Wei Zhang, Carsten Hartmann, Christof Schütte PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Effective medium approximation of ellipsometric response from random surface roughness simulated by finite-element method Thin Solid Films, Vol.617, p. 20, 2016 Bálint Fodor, Peter Kozma, Sven Burger, Miklos Fried, Peter Petrik BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Effects of carbamazepine and two of its metabolites on the non-biting midge Chironomus riparius in a sediment full life cycle toxicity test Water Research, Vol.98, pp. 19-27, 2016 Katharina Heye, Dennis Becker, Christian Lütke-Eversloh, Vedat Durmaz, Thomas Ternes, Matthias Oetken, Jörg Oehlmann PDF
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Modeling and Simulation of Complex Processes
Empirical Bayes Methods for Prior Estimation in Systems Medicine ZIB-Report 16-57 Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz PDF
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arXiv
Modeling and Simulation of Complex Processes
Empirical Bayes Methods, Reference Priors, Cross Entropy and the EM Algorithm ZIB-Report 16-56 Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz PDF
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Modeling and Simulation of Complex Processes
Estimating Missing Entries of a Partial Mean First Passage Time Matrix Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2016 Andreas Grever PDF
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Modeling and Simulation of Complex Processes
Finding dominant structures of nonreversible Markov processes Multiscale Modeling and Simulation, 14(4), pp. 1319-1340, 2016 (preprint available as ZIB-Report 15-40) Natasa Djurdjevac Conrad, Marcus Weber, Christof Schütte PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Finding metastable states in real-world time series with recurrence networks Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016 Iliusi Vega, Christof Schütte, Tim Conrad BibTeX
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Modeling and Simulation of Complex Processes
Finite elements for nano-optics applications Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 178, 2016, ISBN: 978-1-5108-4796-5 Lin Zschiedrich, Frank Schmidt, Jan Pomplun, Sven Burger BibTeX
Modeling and Simulation of Complex Processes
Follicular maturation in cows: mathematical models and data 10. European Conference on Mathematical and Theoretical Biology, 2016 Alexander Lange, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz BibTeX
Modeling and Simulation of Complex Processes
Genome-wide association study of a Varroa-specific defense behavior in honeybees (Apis mellifera) Journal of Heredity, 107(3), pp. 220-227, 2016 Andreas Spötter, Pooja Gupta, Manfred Mayer, Norbert Reinsch, Kaspar Bienefeld BibTeX
Modeling and Simulation of Complex Processes
IR-MALDI ion mobility spectrometry Analytical and Bioanalytical Chemistry, 408(23), pp. 6259-6268, 2016 Jose Villatoro, Martin Zühlke, Daniel Riebe, Jens Riedel, Toralf Beitz, Hans-Gerd Löhmannsröben BibTeX
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Modeling and Simulation of Complex Processes
IR-MALDI ion mobility spectrometry: physical source characterization and application as HPLC detector International Journal for Ion Mobility Spectrometry, pp. 197-297, 2016 José Villatoro, Martin Zühlke, Daniel Riebe, Toralf Beitz, Marcus Weber, Jens Riedel, Hans-Gerd Löhmannsröben BibTeX
DOI
Modeling and Simulation of Complex Processes
Identification of Anisotropies in Welding Seams Using Ultrasound Measurements Master's thesis, Technische Universität Berlin, Fredi Tröltzsch, Martin Weiser (Advisors), 2016 Hannah Schuh BibTeX
Modeling and Simulation of Complex Processes
Increased fluorescence of PbS quantum dots on photonic crystal slab structures Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 181, 2016, ISBN: 978-1-5108-4796-5 Carlo Barth, Sebastian Roder, Daniel Brodoceanu, Tobias Kraus, Sven Burger, Martin Hammerschmidt, Frank Schmidt, Christiane Becker BibTeX
Modeling and Simulation of Complex Processes
Insights into directional scattering: from coupled dipoles to asymmetric dimer nanoantennas Opt. Express, 24(17), pp. 19638-19650, 2016 Aimi Abass, Philipp Gutsche, Bjorn Maes, Carsten Rockstuhl, Emiliano R Martins BibTeX
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Modeling and Simulation of Complex Processes
Joint research for photonics fibres, waveguides and interconnects Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 25, 2016, ISBN: 978-1-5108-4796-5 Antti Lassila, Maksim Shpak, A. Vaigu, M. Smid, A. Velasco, A. Pokatilov, I. Fatadin, R. Ferguson, D. Robinson, T. Walbaum, Sven Burger, Mertsi Haapalainen, P. Vahimaa, H. Lukner, W. Pernice, R. Pitwon, A. Deninger, Jacques Morel, Natascia Castagna, O. Peters, H. Husu BibTeX
Modeling and Simulation of Complex Processes
Locally Enhanced and Tunable Optical Chirality in Helical Metamaterials Photonics, Vol.3, p. 60, 2016 Philipp Gutsche, Raquel Mäusle, Sven Burger BibTeX
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arXiv
Modeling and Simulation of Complex Processes
Mathematical Modeling and Sensitivity Analysis of Lumped­ Parameter Model of the Human Cardiovascular System Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 Raheem Gul BibTeX
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Modeling and Simulation of Complex Processes
Mathematical Modelling of Follicular Maturation in Cows and Women 49. Jahrestagung der Physiologie und Pathologie der Fortpflanzung und gleichzeitig 41. Veterinär-Humanmedizinische Gemeinschaftstagung 2016, Leipzig., 2016 (epub ahead of print) Stefan Schäfer, Julia Plöntzke, Susanna Röblitz BibTeX
Modeling and Simulation of Complex Processes
Mathematical modeling and sensitivity analysis of arterial anastomosis in arm arteries Applied Mathematical Modelling, 2016 (preprint available as ZIB-Report 15-22) Raheem Gul, Christof Schütte, Stefan Bernhard PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Method for fast computation of angular light scattering spectra from 2D periodic arrays Proc. SPIE, Vol.9778, p. 977839, 2016 Jan Pomplun, Sven Burger, Lin Zschiedrich, Philipp Gutsche, Frank Schmidt BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Model Order Reduction of Linear Control Systems: Comparison of Balance Truncation and Singular Perturbation Approximation with Application to Optimal Control Doctoral thesis, Freie Universität Berlin, Carsten Hartmann, Christof Schütte (Advisors), 2016 Adman Daragmeh BibTeX
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Modeling and Simulation of Complex Processes
Model order reduction for the time-harmonic Maxwell equation applied to complex nanostructures Proc. SPIE, Vol.9742, p. 97420M, 2016 (preprint available as ZIB-Report 16-05) Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Sven Burger, Frank Schmidt PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Model reduction algorithms for optimal control and importance sampling of diffusions Nonlinearity, 29(8), pp. 2298-2326, 2016 Carsten Hartmann, Christof Schütte, Wei Zhang BibTeX
DOI
Modeling and Simulation of Complex Processes
Modelling of glucose-insulin metabolism and its effect on the estrous cycle in bovine Annual Meeting of the Population Approach Group in Europe, 2016 Mohamed Omari, Julia Plöntzke, Mascha Berg, Susanna Röblitz BibTeX
Modeling and Simulation of Complex Processes
Molecular Dynamics Simulations : What is the Effect of a Spin Probe on the Drug Loading of a Nanocarrier Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016 Marthe Solleder PDF
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Modeling and Simulation of Complex Processes
New Generation of Vertical-Cavity Surface-Emitting Lasers for Optical Interconnects Future Trends in Microelectronics: Journey into the Unknown, John Wiley & Sons, 2016 Nikolay Ledentsov, Jr., Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Sven Burger, Frank Schmidt BibTeX
DOI
Modeling and Simulation of Complex Processes
Numerical characterization of symmetry properties for photonic crystals with hexagonal lattice Proc. SPIE, Vol.9885, p. 988506, 2016 Carlo Barth, Jürgen Probst, Sven Herrmann, Martin Hammerschmidt, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
On Accurate Simulations of Thin-Film Solar Cells With a Thick Glass Superstrate Light, Energy and the Environment 2016, p. PM3B.5, OSA Technical Digest, 2016 Klaus Jäger, Martin Hammerschmidt, Grit Köppel, Sven Burger, Christiane Becker BibTeX
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Modeling and Simulation of Complex Processes
On Markov state models for non-equilibrium molecular dynamics The Journal of Chemical Physics, 145(174103), 2016 (preprint available as ZIB-Report 16-11) Peter Koltai, Giovanni Ciccotti, Christof Schütte PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
On a strongly convex approximation of a stochastic optimal control problem for importance sampling of metastable diffusions Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 Han Cheng Lie BibTeX
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Modeling and Simulation of Complex Processes
On the numerical approximation of the Perron-Frobenius and Koopman operator Journal of Computational Dynamics, 3(1), pp. 51-77, 2016 Stefan Klus, Peter Koltai, Christof Schütte BibTeX
DOI
Modeling and Simulation of Complex Processes
Optical Properties of Smooth Anti-reflective Three-dimensional Textures for Silicon Thin-film Solar Cells Energy Procedia, Vol.102, pp. 27-35, 2016 David Eisenhauer, Klaus Jäger, Grit Köppel, Bernd Rech, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Optical chirality: conservation law in arbitrary space 606. WE-Heraeus-Seminar on Nanophotonics and Complex Spatial Modes of Light, 2016 Philipp Gutsche, Lisa Poulikakos, Sven Burger, Martin Hammerschmidt, Frank Schmidt BibTeX
Modeling and Simulation of Complex Processes
Optical simulation of complex nanostructured solar cells with a reduced basis method Doctoral thesis, Freie Universität Berlin, Frank Schmidt, Bernd Rech, Ralf Kornhuber (Advisors), 2016 Martin Hammerschmidt BibTeX
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Modeling and Simulation of Complex Processes
Parameter-dependent Parallel Block Sparse Arnoldi and Döhler Algorithms on Distributed Systems ZIB-Report 16-15 Philipp Gutsche, Matthias Läuter, Frank Schmidt PDF
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Modeling and Simulation of Complex Processes
Path Integral Techniques in Molecular Dynamics Simulations of Open Boundary Systems Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 Animesh Agarwal BibTeX
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Modeling and Simulation of Complex Processes
Prior estimation and Bayesian inference from large cohort data sets ZIB-Report 16-09 Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz PDF
PDF
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Modeling and Simulation of Complex Processes
Quantitative Defect Reconstruction in Active Thermography for Fiber-Reinforced Composites Proceedings 19th World Conference on Non-Destructive Testing (WCNDT 2016), 2016 (preprint available as ZIB-Report 16-13) Sebastian Götschel, Christiane Maierhofer, Jan Müller, Nick Rothbart, Martin Weiser PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Ray Tracing Boundary Value Problems: Simulation and SAFT Reconstruction for Ultrasonic Testing Proceedings 19th World Conference on Non-Destructive Testing (WCNDT 2016), 2016 (preprint available as ZIB-Report 16-14) Sebastian Götschel, Christian Höhne, Sanjeevareddy Kolkoori, Steffen Mitzscherling, Jens Prager, Martin Weiser PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Reconstruction and analysis of the state space for the identification of dynamical states in real-world time-series Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 Iliusi Vega BibTeX
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Modeling and Simulation of Complex Processes
Reconstruction of disease transmission rates: applications to measles, dengue, and influenza Journal of Theoretical Biology, Vol.400, pp. 138-153, 2016 Alexander Lange BibTeX
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Modeling and Simulation of Complex Processes
Reconstruction of photonic crystal geometries using a reduced basis method for nonlinear outputs Proc. SPIE, Vol.9756, p. 97561R, 2016 (preprint available as ZIB-Report 16-06) Martin Hammerschmidt, Carlo Barth, Jan Pomplun, Sven Burger, Christiane Becker, Frank Schmidt PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Reduced basis method for electromagnetic scattering problem: a case study for FinFETs Optical and Quantum Electronics, Vol.48, p. 250, 2016 (preprint available as ZIB-Report 16-10) Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Sven Burger, Frank Schmidt PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Simulation of Plasmonic Nanoparticles in Thin Film Solar Cells Doctoral thesis, Freie Universität Berlin, Martina Schmid, Frank Schmidt (Advisors), 2016 Phillip Manley PDF
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Modeling and Simulation of Complex Processes
Simulations of sinusoidal nanotextures for coupling light into c-Si thin-film solar cells Opt. Express, Vol.24, p. A569, 2016 Klaus Jäger, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Sinusoidal Nanotextures for Enhanced Light Management in Thin-Film Solar Cells 28th Workshop on Quantum Solar Energy Conversion - (QUANTSOL), European Society for Quantum Solar Energy Conversion (Ed.), 2016 Klaus Jäger, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker PDF
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Modeling and Simulation of Complex Processes
Sinusoidal gratings for optimized light management in c-Si thin-film solar cells Proc. SPIE, Vol.9898, p. 989808, 2016 Klaus Jäger, Grit Köppel, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Solving the master equation without kinetic Monte Carlo: Tensor train approximations for a CO oxidation model Journal of Computational Physics, Vol.314, pp. 489-502, 2016 Patrick Gelß, Sebastian Matera, Christof Schütte BibTeX
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Modeling and Simulation of Complex Processes
Spectral approach to metastability of non-reversible complex processes Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 Nisara Sriwattanaworachai BibTeX
Modeling and Simulation of Complex Processes
Symmetry-Dependency of Anticrossing Phenomena in Slab-Type Photonic Crystals Opt. Express, Vol.24, p. 10931, 2016 Carlo Barth, Sven Burger, Christiane Becker BibTeX
DOI
Modeling and Simulation of Complex Processes
Tailoring local optical chirality in helical metamaterials 2016 10th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, pp. 73-75, IEEE, 2016 Philipp Gutsche, Raquel Mäusle, Sven Burger BibTeX
DOI
Modeling and Simulation of Complex Processes
The Chiral Coefficient: Rapid Optimization of Broadband Plasmonic Chirality 2016 MRS Fall Meeting & Exhibit, 2016 Jon Wilson, Sven Herrmann, Philipp Gutsche, Sven Burger, Kevin McPeak BibTeX
Modeling and Simulation of Complex Processes
The Monte Carlo Computation Error of Transition Probabilities Statistics & Probability Letters, Vol.118, pp. 163-170, 2016 (preprint available as ZIB-Report 16-37) Adam Nielsen PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
The Optical Chirality Flux as a Useful Far-Field Probe of Chiral Near Fields ACS Photonics, Vol.3, p. 1619, 2016 Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris BibTeX
arXiv
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Modeling and Simulation of Complex Processes
The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling Journal of Chemical Physics, 145(21), 2016 (preprint available as ZIB-Report 16-60) Stefanie Winkelmann, Christof Schütte PDF
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Modeling and Simulation of Complex Processes
Time-harmonic optical chirality in inhomogeneous space Proc. SPIE, Vol.9756, p. 97560X, 2016 Philipp Gutsche, Lisa Poulikakos, Martin Hammerschmidt, Sven Burger, Frank Schmidt BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Towards tensor-based methods for the numerical approximation of the Perron-Frobenius and Koopman operator Journal of Computational Dynamics, 3(2), pp. 139-161, 2016 Stefan Klus, Christof Schütte BibTeX
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Modeling and Simulation of Complex Processes
Using sparse kernels to design computer experiments with tunable precision ZIB-Report 16-33 (Appeared in: Ana Colubi, Angela Blanco and Cristian Gatu (eds.) 22nd Intern. Conf. on Computational Statistics - COMSTAT 2016, Oviedo, Spain, 23-26 August 2016, Proceedings ISBN 978-90-73592-36-0. Pp. 397-408) Guillaume Sagnol, Hans-Christian Hege, Martin Weiser PDF
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Modeling and Simulation of Complex Processes
Variational Bayesian Inference and Model Selection for the Stochastic Block Model with Irrelevant Vertices ZIB-Report 16-01 Christian Tobias Willenbockel, Christof Schütte PDF
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Modeling and Simulation of Complex Processes
2015
A Critical Appraisal of Markov State Models The European Physical Journal Special Topics, 224(12), pp. 2445-2462, 2015 (preprint available as ZIB-Report 15-18) Christof Schütte, Marco Sarich PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
A Far-Field Interpretation of Optical Chirality in Analogy to Poynting’s Theorem META '15 Proceedings, pp. 1215-1216, 2015 Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris BibTeX
Modeling and Simulation of Complex Processes
A Far-Field Interpretation of the Optical Chirality Frontiers in Nanophotonics (Congressi Stefano Franscini), 2015 Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris BibTeX
Modeling and Simulation of Complex Processes
A Novel Approach to Quantify Morning Stiffness in Patients with Rheumatoid Arthritis Annual European Congress of Rheumatology, EULAR 2015, Rome, 2015 Heide Boeth, Georg Duda, Daniel Hinzmann, Sandra Hermann, William R. Taylor, Rainald Ehrig, Tom Witaschek, Frank Buttgereit BibTeX
Modeling and Simulation of Complex Processes
A Variational Bayesian Algorithm for Clustering of Large and Complex Networks ZIB-Report 15-25 Christian Tobias Willenbockel, Christof Schütte PDF
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Modeling and Simulation of Complex Processes
A guide to numerical modelling in systems biology Springer, 2015, ISBN: 978-3-319-20058-3 Peter Deuflhard, Susanna Röblitz BibTeX
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Modeling and Simulation of Complex Processes
A new approach for honeybee breeding - genomic selection 44th Apimondia International Apicultural congress, 2015. Daejeon, South Korea, 2015 Kaspar Bienefeld, Andreas Spötter, Norbert Reinsch, Manfred Mayer, Pooja Gupta BibTeX
Modeling and Simulation of Complex Processes
A systems biology approach to bovine fertility and metabolism: Introduction of a glucose insulin model 15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2015 (preprint available as ZIB-Report 15-51) Julia Plöntzke, Mascha Berg, Claudia Stötzel, Susanna Röblitz PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Adaptive Lossy Trajectory Compression for Optimal Control of Parabolic PDEs Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2015 Sebastian Götschel BibTeX
Modeling and Simulation of Complex Processes
An Optimal Control Approach to Implant Shape Design : Modeling, Analysis and Numerics Doctoral thesis, Universität Bayreuth, Anton Schiela (Advisor), 2015 Lars Lubkoll BibTeX
Modeling and Simulation of Complex Processes
Approximating and Clustering Markov Chains via Kullback-Leibler-Divergence Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 Christoph Lange BibTeX
Modeling and Simulation of Complex Processes
Complementing ODE-based System Analysis Using Boolean Networks Derived from an Euler-like Transformation PLOS ONE, 2015 (preprint available as ZIB-Report 15-46) Claudia Stötzel, Susanna Röblitz, Heike Siebert PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Computergestützte Simulationen zur Abschätzung gesundheitlicher Risiken durch anthropogene Spurenstoffe der Wassermatrix KA Korrespondenz Abwasser, Abfall, Vol.3/15, pp. 264-267, 2015 Vedat Durmaz, Marcus Weber, Meyer, Mückter BibTeX
Modeling and Simulation of Complex Processes
Computing the nearest reversible Markov chain Numerical Linear Algebra with Applications, 22(3), pp. 483-499, 2015 (preprint available as ZIB-Report 14-48) Adam Nielsen, Marcus Weber PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Construction of ODE systems from time series data by a highly flexible modelling approach ArXiv e-prints, Vol.math.NA 1512.03357, 2015 (preprint available as ZIB-Report 15-59) Thomas Dierkes PDF
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Modeling and Simulation of Complex Processes
Coupled-Mode Equations for Stimulated Brillouin Scattering CUDOS 14th Annual Workshop 2015 Handbook, 2015 Philipp Gutsche, Christian Wolff, Sayyed R. Mirnaziry, Christopher G. Poulton BibTeX
Modeling and Simulation of Complex Processes
Crossing the Scales in Structural Mechanics and Molecular Research Habilitation, Technische Universität Berlin, 2015 Konstantin Fackeldey BibTeX
Modeling and Simulation of Complex Processes
Design Principles for Plasmonic Nanoparticle Devices Progress in Nonlinear Nano-Optics, Shuji Sakabe, Christoph Lienau, Rüdiger Grunwald (Eds.), Springer, Nano-Optics and Nanophotonics, pp. 223-247, 2015 Phillip Manley, Sven Burger, Frank Schmidt, Martina Schmid BibTeX
arXiv
DOI
Modeling and Simulation of Complex Processes
Design of Photonic Crystals with Near-Surface Field Enhancement Light, Energy and the Environement 2015, p. JTu5A.9, OSA Technical Digest, 2015 Carlo Barth, Klaus Jäger, Sven Burger, Martin Hammerschmidt, Frank Schmidt, Christiane Becker BibTeX
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Modeling and Simulation of Complex Processes
Die Cross-Entropy-Methode für stochastische Optimierungsprobleme Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 Oliver Zwingel BibTeX
Modeling and Simulation of Complex Processes
Engineering of optical modes in vertical-cavity microresonators by aperture placement: applications to single-mode and near-field lasers Proc. SPIE, p. 93810V, Vol.9381, 2015 Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Gunther Steinle, Nikolay Ledentsov, Jr., Kent D. Choquette, Sven Burger, Frank Schmidt BibTeX
DOI
Modeling and Simulation of Complex Processes
Estimating exit rates in rare event dynamical systems via extrapolation ZIB-Report 15-54 Marcus Weber, Jannes Quer PDF
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Modeling and Simulation of Complex Processes
Faster SDC convergence on non-equidistant grids by DIRK sweeps BIT Numerical Mathematics, 55(4), pp. 1219-1241, 2015 (preprint available as ZIB-Report 13-30) Martin Weiser PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Fourier ellipsometry – an ellipsometric approach to Fourier scatterometry J. Eur. Opt. Soc.-Rapid, Vol.10, p. 15002, 2015 Peter Petrik, Nitish Kumar, Miklos Fried, Bálint Fodor, György Juhász, Silvania Pereira, Sven Burger, H. Paul Urbach BibTeX
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Modeling and Simulation of Complex Processes
G-PCCA: Spectral Clustering for Non-reversible Markov Chains ZIB-Report 15-35 Marcus Weber, Konstantin Fackeldey PDF
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Modeling and Simulation of Complex Processes
High affinity flourescence labelled ligands for the estrogen receptor Eur. J. Org. Chem., 2015(10), pp. 2157-2166, 2015 Frank Abendroth, Marthe Solleder, Pia Welker, Kai Licha, Marcus Weber, Oliver Seitz, Dorothea Mangoldt BibTeX
Modeling and Simulation of Complex Processes
High-speed modulation, wavelength, and mode control in vertical-cavity surface-emitting lasers Proc. SPIE, p. 93810F, Vol.9381, 2015 Nikolay Ledentsov, Jr., Jörg-R. Kropp, Vitaly Shchukin, Gunther Steinle, Nikolay Ledentsov, Jr., Jarek P. Turkiewicz, Bo Wu, Qiu Shaofeng, Yanan Ma, Feng Zhiyong, Sven Burger, Frank Schmidt, Christoph Caspar, Ronald Freund, Kent D. Choquette BibTeX
DOI
Modeling and Simulation of Complex Processes
Highly indistinguishable photons from deterministic quantum-dot microlenses utilizing three-dimensional in situ electron-beam lithography Nature Communications, Vol.6, p. 7662, 2015 Manuel Gschrey, Alexander Thoma, Peter Schnauber, Marc Seifried, Ronny Schmidt, Benjamin Wohlfeil, Luzy Krüger, Jan-Hindrick Schulze, Tobias Heindel, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Stephan Reitzenstein BibTeX
DOI
Modeling and Simulation of Complex Processes
Hp-finite-elements for simulating electromagnetic fields in optical devices with rough textures Proc. SPIE, p. 96300S, Vol.9630, 2015 Sven Burger, Philipp Gutsche, Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Frank Schmidt, Benjamin Wohlfeil, Lin Zschiedrich BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Identifying Multivalent Binding Kinetics of Precision Glycomacromolecules: A Kinetic Study Using kinITC Münster Symposium on Cooperative Effects 2015 - SFB 858, at Westfälische Wilhelms-Universität Münster, 2015, 2015 Sinaida Igde, Hendrik Wölk, Susanna Röblitz, Marco Reidelbach, Marcus Weber, Laura Hartmann BibTeX
Modeling and Simulation of Complex Processes
Impact of nonlinear loss on stimulated Brillouin scattering J. Opt. Soc. Am. B, 32(9), pp. 1968-1978, 2015 Christian Wolff, Philipp Gutsche, Michael J. Steel, Benjamin J. Eggleton, Christopher G. Poulton BibTeX
DOI
arXiv
Modeling and Simulation of Complex Processes
Indistinguishable Photons from Deterministic Quantum Dot Microlenses European Conference on Lasers and Electro-Optics - European Quantum Electronics Conference, p. EA_8_5, 2015 Alexander Thoma, Peter Schnauber, Manuel Gschrey, Ronny Schmidt, Benjamin Wohlfeil, Marc Seifried, Jan-Hindrick Schulze, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Tobias Heindel, Stephan Reitzenstein PDF
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Modeling and Simulation of Complex Processes
Indistinguishable Photons from Deterministically Fabricated Quantum Dot Microlenses Advanced Photonics, p. IS4A.6, OSA Technical Digest, 2015 Alexander Thoma, Peter Schnauber, Manuel Gschrey, Ronny Schmidt, Benjamin Wohlfeil, Marc Seifried, Jan-Hindrick Schulze, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Tobias Heindel, Stephan Reitzenstein BibTeX
DOI
Modeling and Simulation of Complex Processes
Influence of pH and sequence in peptide aggregation via molecular simulation Journal of Chemical Physics, 143(24), 2015 (preprint available as ZIB-Report 15-42) Marta Enciso, Christof Schütte, Luigi Delle Site PDF (ZIB-Report)
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Modeling and Simulation of Complex Processes
Integrated fiber grating couplers in silicon photonics Doctoral thesis, Technische Universität Berlin, Klaus Petermann (Advisor), 2015 Benjamin Wohlfeil BibTeX
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Modeling and Simulation of Complex Processes
Interpretation of tibio-femoral kinematics critically depends upon the kinematic analysis approach ISB 2015, 25th congress of the International Society of Biomechanics, Glasgow, 2015 Maryam Hajizadeh, Pascal Schütz, Renate List, Heide Boeth, Rainald Ehrig, Barbara Postolka, Michael A. R. Freeman, William R. Taylor BibTeX
Modeling and Simulation of Complex Processes
Introduction to Uncertainty Quantification Springer, 2015, ISBN: 978-3-319-23394-9 T. J. Sullivan BibTeX
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Modeling and Simulation of Complex Processes
Kondition des Eigenwertproblems von Markov-Ketten Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 Susanne Röhl BibTeX
Modeling and Simulation of Complex Processes
Korrelation für lineare und nichtlineare Zusammenhänge Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 Jessica Schöpke BibTeX
Modeling and Simulation of Complex Processes
Korrelation für lineare und nichtlineare Zusammenhänge Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 Jessica Schöpke BibTeX
Modeling and Simulation of Complex Processes
Lossy Compression for PDE-constrained Optimization: Adaptive Error Control Comput. Optim. Appl., 62(1), pp. 131-155, 2015 (preprint available as ZIB-Report 13-27) Sebastian Götschel, Martin Weiser PDF
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Modeling and Simulation of Complex Processes
Markov State Models and Molecular Alchemy Molecular Physics, 113(1), pp. 69-78, 2015 (preprint available as ZIB-Report 14-05) Christof Schütte, Adam Nielsen, Marcus Weber PDF (ZIB-Report)
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