Modeling and Simulation of Complex Processes
The department Modeling and Simulation of Compex Processes develops efficient modelling, simulation, and optimization tools and algorithms for challenging application problems from medicine, systems biology, and molecular dynamics as well as nano-optical systems and humanities. Based on tight collaboration with application partners, the department aims not only at generating scientific insight, but also at providing software prototypes and demonstrators for specific solutions.
For these, we develop adaptive algorithms in the areas of finite elements, agent-based models, conformation dynamics, optimal control, and parameter estimation, exploiting multi-level structures for efficiency and robustness. With increasing complexity of the applications, techniques for multi-scale, multi-physics and hybrid models play a more and more important role, as do stochastic aspects, uncertainty quantification, and design tasks.
Publications
2023 |
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Arthur Straube, Stefanie Winkelmann, Felix Höfling | Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles | The Journal of Physical Chemistry B, 127(13), pp. 2955-2967, 2023 (preprint available as ZIB-Report 22-21) |
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Phillip Semler, Martin Weiser | Adaptive Gaussian Process Regression for Efficient Building of Surrogate Models in Inverse Problems | Inverse Problems, 39(12), 2023 |
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Lilli Kuen, Fridtjof Betz, Felix Binkowski, Philipp-Immanuel Schneider, Martin Hammerschmidt, Niels Heermeier, Sven Rodt, Stephan Reitzenstein, Sven Burger | Applying a Riesz-projection-based contour integral eigenvalue solver to compute resonance modes of a VCSEL | Proc. SPIE, p. 125750J, Vol.12575, 2023 |
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DOI arXiv |
Elena Mikheeva, Rémi Colom, Karim Achouri, Adam Overvig, Felix Binkowski, Jean-Yves Duboz, Sébastien Cueff, Shanhui Fan, Sven Burger, Andrea Alù, Patrice Genevet | Asymmetric phase modulation with light with parity-symmetry broken metasurfaces | Optica, Vol.10, p. 1287, 2023 |
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Mauricio del Razo, Stefanie Winkelmann, Rupert Klein, Felix Höfling | Chemical diffusion master equation: formulations of reaction-diffusion processes on the molecular level | Journal of Mathematical Physics, 64(1), 2023 |
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DOI arXiv |
Danbi Yoo, Peter Tillmann, Tobias Krauss, Johannes Sutter, Angelika Harter, Sergei Trofimov, Boris Naydenov, Klaus Jäger, Hubert Hauser, Christiane Becker | Comparative Optical Analysis of Imprinted Nano-, Micro- and Biotextures on Solar Glasses for Increased Energy Yield | Solar RRL, Vol.7, p. 2300071, 2023 |
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Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Cover Picture: Resonance Expansion of Quadratic Quantities with Regularized Quasinormal Modes | Phys. Status Solidi A, Vol.220, p. 2370013, 2023 |
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Rémi Colom, Elena Mikheeva, Karim Achouri, Jesus Zuniga-Perez, Nicolas Bonod, Olivier J.F. Martin, Sven Burger, Patrice Genevet | Crossing of the Branch Cut: The Topological Origin of a Universal 2π-Phase Retardation in Non-Hermitian Metasurfaces (Laser Photonics Rev. 17(6)/2023) | Laser Photonics Rev., Vol.17, p. 2370029, 2023 |
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Remi Colom, Elena Mikheeva, Karim Achouri, Jesus Zuniga-Perez, Nicolas Bonod, Olivier J. F. Martin, Sven Burger, Patrice Genevet | Crossing of the branch cut: the topological origin of a universal 2π-phase retardation in non-Hermitian metasurfaces | Laser Photonics Rev., Vol.17, p. 2200976, 2023 |
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DOI arXiv |
Arthur Straube, Felix Höfling | Depinning transition of self-propelled particles | 2023 (under review) |
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arXiv |
Isam Ben Soltane, Rémi Colom, Brian Stout, Nicolas Bonod | Derivation of the Transient and Steady Optical States from the Poles of the S-Matrix | Laser Photon. Rev., Vol.17, p. 2200141, 2023 |
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Marvin Lücke, Michael Dellnitz, Eyke Hüllermeier, Sina Ober-Blöbaum, Christian Offen, Sebastian Peitz, Karlson Pfannschmidt | Efficient Time-Stepping for Numerical Integration Using Reinforcement Learning | SIAM Journal on Scientific Computing, 45(2), 2023 |
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Ivan Sekuliĉ, Philipp-Immanuel Schneider, Oliver Anton, Elisa Da Ros, Victoria Henderson, Markus Krutzik | Efficient machine-learning approach to optimize trapped cold atom ensembles for quantum memory applications | Proc. SPIE, p. 127400F, Vol.12740, 2023 |
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Matthias Plock, Sven Burger, Philipp-Immanuel Schneider | Efficient reconstruction of model parameters using Bayesian target-vector optimization | Proc. SPIE, p. PC1261905, Vol.PC12619, 2023 |
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Martin Hammerschmidt, Lin Zschiedrich, Lauryna Siaudinyté, Phillip Manley, Philipp-Immanuel Schneider, Sven Burger | Forward simulation of coherent beams on grating structures for coherent scatterometry | Proc. SPIE, p. PC1261907, Vol.PC12619, 2023 |
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DOI arXiv |
Amal Alphonse, Diogo Caetano, Ana Djurdjevac, Charles M. Elliott | Function spaces, time derivatives and compactness for evolving families of Banach spaces with applications to PDEs | Journal of Differential Equations, Vol.353, pp. 268-338, 2023 |
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arXiv DOI |
Lucas Rickert, Fridtjof Betz, Matthias Plock, Sven Burger, Tobias Heindel | High-performance designs for fiber-pigtailed quantum-light sources based on quantum dots in electrically-controlled circular Bragg gratings | Opt. Express, Vol.31, p. 14750, 2023 |
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DOI arXiv |
Marvin Lücke, Jobst Heitzig, Péter Koltai, Nora Molkethin, Stefanie Winkelmann | Large population limits of Markov processes on random networks | Stochastic Processes and their Applications, Vol.166, 2023 (epub ahead of print) |
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DOI arXiv |
Ariane Ernst, Undine Falkenhagen, Stefanie Winkelmann | Model reduction for Ca2+-induced vesicle fusion dynamics | Proceedings in Applied Mathematics & Mechanics, 2023 (accepted for publication) |
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Arne Thies, Vikram Sunkara, Sourav Ray, Hanna Wulkow, M. Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann | Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design | Scientific Reports, 13(607), 2023 |
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Deshabrato Mukherjee, Benjámin Kalas, Sven Burger, György Sáfrán, Miklós Serényi, Miklós Fried, Péter Petrik | Nanostructures for in-situ surface-enhanced Kretschmann-Raether ellipsometry | Proc. SPIE, p. 124280S, Vol.12428, 2023 |
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DOI arXiv |
Lia Gander, Rolf Krause, Martin Weiser, Francisco Costabal, Simone Pezzuto | On the Accuracy of Eikonal Approximations in Cardiac Electrophysiology in the Presence of Fibrosis | Functional Imaging and Modeling of the Heart. FIMH 2023., Vol.13958, Lecture Notes in Computer Science, 2023 |
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Peter Tillmann | Optimizing bifacial tandem solar cells for realistic operation conditions | Doctoral thesis, Freie Universität Berlin, Christof Schütte, Christiane Becker (Advisors), 2023 |
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Felix Binkowski, Fridtjof Betz, Remi Colom, Patrice Genevet, Sven Burger | Poles and zeros of electromagnetic quantities in photonic systems | arXiv, p. 2307.04654, 2023 |
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DOI arXiv |
Fridtjof Betz, Felix Binkowski, Sven Burger | RPExpand | Zenodo, p. 7840116, 2023 |
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Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Resonance expansion of quadratic quantities with regularized quasinormal modes | Phys. Status Solidi A, Vol.220, p. 2200892, 2023 |
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DOI arXiv |
Felix Binkowski | Riesz-projection-based methods for the numerical simulation of resonance phenomena in nanophotonics | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2023 |
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Francisco Javier Beron-Vera, Maria Josefina Olascoaga, Luzie Helfmann, Philippe Miron | Sampling-Dependent Transition Paths of Iceland-Scotland Overflow Water | Journal of Physical Oceanography, 53(4), pp. 1151-1160, 2023 |
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arXiv DOI |
Felix Binkowski, Fridtjof Betz, Remi Colom, Patrice Genevet, Sven Burger | Source code and simulation results: Poles and zeros of electromagnetic quantities in photonic systems | Zenodo, p. 8063931, 2023 |
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Sarah Wolf, Steffen Fürst, Andreas Geiges, Manfred Laublichler, Jahel Mielke, Gesine Steudle, Konstantin Winter, Carlo Jaeger | The Decision Theatre Triangle for societal challenges – an example case and research needs | Journal of Cleaner Production, Vol.394, p. 136299, 2023 |
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Julian M. Bopp, Matthias Plock, Tim Turan, Gregor Pieplow, Sven Burger, Tim Schröder | ‘Sawfish’ Spin-Photon Interface for Near-Unity Emitter-to-Waveguide Coupling | Conference on Lasers and Electro-Optics (CLEO), p. SF1O.6, OSA Technical Digest, 2023 |
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2022 |
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Lucas Rickert, Timm Gao, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Tobias Heindel | A Plug&Play Telecom-Wavelength Single-Photon Source for Quantum Key Distribution | Quantum 2.0, p. QTu4C.6, Technical Digest Series (Optica), 2022 |
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Mauricio del Razo, Daniela Frömberg, Arthur Straube, Christof Schütte, Felix Höfling, Stefanie Winkelmann | A probabilistic framework for particle-based reaction–diffusion dynamics using classical Fock space representations | Letters in Mathematical Physics, 112(49), 2022 |
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arXiv DOI |
Timm Gao, Lucas Rickert, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Tobias Heindel | A quantum key distribution testbed using a plug&play telecom-wavelength single-photon source | Appl. Phys. Rev., Vol.9, p. 011412, 2022 |
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DOI arXiv |
Konstantin Fackeldey, Mathias Oster, Leon Sallandt, Reinhold Schneider | Approximative Policy Iteration for Exit Time Feedback Control Problems driven by Stochastic Differential Equations using Tensor Train format | SIAM Journal on Multiscale Modeling and Simulation, 20(1), pp. 379-403, 2022 |
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arXiv DOI |
Matthias Plock, Kas Andrle, Sven Burger, Philipp-Immanuel Schneider | Bayesian Target-Vector Optimization for Efficient Parameter Reconstruction | Adv. Theory Simul., Vol.5, p. 2200112, 2022 |
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DOI arXiv |
Philipp-Immanuel Schneider, Lin Zschiedrich, Martin Hammerschmidt, Lilli Kuen, Ivan Sekuliĉ, Julien Kluge, Bastian Leykauf, Markus Krutzik, Sven Burger | Boosting quantum optics experiments with Bayesian optimization | Proc. SPIE, p. 122270F, Vol.12227, 2022 |
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Oscar Avalos-Ovando, Eva Yazmin Santiago, Artur Movsesyan, Xiang-Tian Kong, Peng Yu, Lucas V. Besteiro, Larousse Khosravi Khorashad, Hiromi Okamoto, Joseph M. Slocik, Miguel Correa-Duarte, Miguel Comesana-Hermo, Tim Liedl, Gil Markovich, Sven Burger, Alexander O. Govorov | Chiral Bioinspired Plasmonics: A Paradigm Shift for Optical Activity and Photochemistry | ACS Photon., Vol.9, p. 2219, 2022 |
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Yoel Negrin-Montecelo, Artur Movsesyan, Jie Gao, Sven Burger, Zhiming Wang, Sylvain Nlate, Emilie Pouget, Reiko Oda, Miguel Comesana-Hermo, Alexander O. Govorov, Miguel Correa-Duarte | Chiral Generation of Hot Carriers for Polarization-Sensitive Plasmonic Photocatalysis with Hybrid Nanostructures | J. Am. Chem. Soc., Vol.144, p. 1663, 2022 |
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Marvin Lücke, Jingyi Lu, Daniel E. Quevedo | Coding for secrecy in remote state estimation with an adversary | IEEE Transactions on Automatic Control, 67(9), pp. 4955-4962, 2022 |
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Sourav Rej, Eva Yazmin Santiago, Olga Baturina, Yu Zhang, Sven Burger, Stepan Kment, Alexander O. Govorov, Alberto Naldoni | Colloidal Titanium Nitride Nanobars for Broadband Inexpensive Plasmonics and Photochemistry from Visible to Mid-IR Wavelengths | Nano Energy, Vol.104, p. 107989, 2022 |
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DOI arXiv |
Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger | Computation of eigenfrequency sensitivities using Riesz projections for efficient optimization of nanophotonic resonators | Commun. Phys., Vol.5, p. 202, 2022 |
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DOI arXiv |
Lucas Rickert, Fridtjof Betz, Matthias Plock, Sven Burger, Tobias Heindel | Data publication for "High-performance designs for fiber-pigtailed quantum-light sources based on quantum dots in electrically-controlled circular Bragg gratings" | Zenodo, p. 7360516, 2022 |
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Phillip Manley, Jan Krüger, Lin Zschiedrich, Martin Hammerschmidt, Bernd Bodermann, Rainer Köning, Philipp-Immanuel Schneider | Elementary, my dear Zernike: model order reduction for accelerating optical dimensional microscopy | EPJ Web Conf., p. 10010, Vol.266, 2022 |
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Christoph Gorgulla, Abhilash Jayaraj, Konstantin Fackeldey, Haribabu Arthanari | Emerging frontiers in virtual drug discovery: From quantum mechanical methods to deep learning approaches | Current Opinion in Chemical Biology, Vol.69, pp. 102156-102156-12, 2022 |
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Remi Colom, Felix Binkowski, Fridtjof Betz, Yuri Kivshar, Sven Burger | Enhanced Purcell factor for nanoantennas supporting interfering resonances | Phys. Rev. Research, Vol.4, p. 023189, 2022 |
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DOI arXiv |
Sophie Fischer-Holzhausen, Susanna Röblitz | Hormonal regulation of ovarian follicle growth in humans: Model-based exploration of cycle variability and parameter sensitivities | Journal of Theoretical Biology, 2022 |
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Klaus Jäger, Johannes Sutter, Philipp Tockhorn, Martin Hammerschmidt, Philipp-Immanuel Schneider, Steve Albrecht, Christiane Becker | Improving perovskite/silicon tandem solar cells with optical simulations | Proc. SPIE, p. PC1215001, Vol.PC12150, 2022 |
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Sophie Fischer-Holzhausen, Susanna Röblitz | Mathematical modelling of follicular growth and ovarian stimulation | Current Opinion in Endocrine and Metabolic Research, 2022 |
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Peter Tillmann, Klaus Jäger, Asher Karsenti, Lev Kreinin, Christiane Becker | Model-Chain Validation for Estimating the Energy Yield of Bifacial Perovskite/Silicon Tandem Solar Cells | Sol. RRL, Vol.6, p. 2200079, 2022 |
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Philipp Tockhorn, Johannes Sutter, Alexandros Cruz, Philipp Wagner, Klaus Jäger, Danbi Yoo, Felix Lang, Max Grischek, Bor Li, Jinzhao Li, Oleksandra Shargaieva, Eva Unger, Amran Al-Ashouri, Eike Köhnen, Martin Stolterfoth, Dieter Neher, Rutger Schlatmann, Bernd Rech, Bernd Stannowski, Steve Albrecht, Christiane Becker | Nano-optical designs for high-efficiency monolithic perovskite–silicon tandem solar cells | Nat. Nanotechnol., Vol.17, p. 1214, 2022 |
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Philipp Tockhorn, Johannes Sutter, Alexandros Cruz, Philipp Wagner, Klaus Jäger, Danbi Yoo, Felix Lang, Max Grischek, Bor Li, Amran Al-Ashouri, Eike Köhnen, Martin Stolterfoht, Dieter Neher, Rutger Schlatmann, Bernd Rech, Bernd Stannowski, Steve Albrecht, Christiane Becker | Nanooptically Enhanced Perovskite/Silicon Tandem Solar Cells with 29.80% Power Conversion Efficiency | OSA Adv. Photonics, p. JTu4H.2, OSA Technical Digest, 2022 |
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Yujing Wang, Luca Vannucci, Sven Burger, Niels Gregersen | Near-unity efficiency in ridge waveguide-based, on-chip single-photon sources | Mater. Quantum Technol., Vol.2, p. 045004, 2022 |
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DOI arXiv |
Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger | Numerical methods for the investigation of resonances in nanophotonics | The 12th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2022), S. Zouhdi (Ed.), p. 247, 2022 |
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Lucas Bremer, Carlos Jimenez, Simon Thiele, Ksenia Weber, Tobias Huber, Sven Rodt, Alois Herkommer, Sven Burger, Sven Höfling, Harald Giessen, Stephan Reitzenstein | Numerical optimization of single-mode fiber- coupled single-photon sources based on semiconductor quantum dots | Opt. Express, Vol.30, p. 15913, 2022 |
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DOI arXiv |
Kevin Martens, Timon Funck, Eva Y. Santiago, Alexander O. Govorov, Sven Burger, Tim Liedl | Onset of Chirality in Plasmonic Meta-Molecules and Dielectric Coupling | ACS Nano, Vol.16, p. 16143, 2022 |
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DOI arXiv |
Kseniia Volkova, Julia Heupel, Sergei Trofimov, Fridtjof Betz, Rémi Colom, Rowan W. MacQueen, Sapida Akhundzada, Meike Reginka, Arno Ehresmann, Johann Peter Reithmeier, Sven Burger, Cyril Popov, Boris Naydenov | Optical and Spin Properties of NV Center Ensembles in Diamond Nano-Pillars | Nanomaterials, Vol.12, p. 1516, 2022 |
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Stephan Oehme, Philippe Moewis, Heide Boeth, Benjamin Bartek, Annika Lippert, Christoph von Tycowicz, Rainald Ehrig, Georg Duda, Tobias Jung | PCL insufficient patients with increased translational and rotational passive knee joint laxity have no increased range of anterior–posterior and rotational tibiofemoral motion during level walking | Scientific Reports, 12(1), pp. 1-11, 2022 |
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Artur Movsesyan, Eva Yazmin Santiago, Sven Burger, Miguel Correa-Duarte, Lucas V. Besteiro, Zhiming Wang, Alexander O. Govorov | Plasmonic nanocrystals with complex shapes for photocatalysis and growth: Contrasting anisotropic hot-electron generation with the photothermal effect | Adv. Opt. Mater., Vol.10, p. 2102663, 2022 |
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DOI arXiv |
Philipp-Immanuel Schneider, Phillip Manley, Jan Krüger, Lin Zschiedrich, Rainer Köning, Bernd Bodermann, Sven Burger | Reconstructing phase aberrations for high-precision dimensional microscopy | Proc. SPIE, Vol.12137, p. 121370I, 2022 |
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Matthias Plock, Kas Andrle, Sven Burger, Philipp-Immanuel Schneider | Research data and example scripts for the paper "Bayesian Target-Vector Optimization for Efficient Parameter Reconstruction" | Zenodo, 2022 |
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Tiago Ramos Leite, Lin Zschiedrich, Orhan Kizilkaya, Kevin M. McPeak | Resonant Plasmonic–Biomolecular Chiral Interactions in the Far-Ultraviolet: Enantiomeric Discrimination of sub-10 nm Amino Acid Films | Nano Lett., Vol.22, p. 7343, 2022 |
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Julian M. Bopp, Matthias Plock, Tim Turan, Gregor Pieplow, Sven Burger, Tim Schröder | Sawfish Photonic Crystal Cavity for Near-Unity Emitter-to-Fiber Interfacing in Quantum Network Applications | arXiv, p. 2210.04702, 2022 |
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DOI arXiv |
Fridtjof Betz, Remi Colom, Sven Burger, Boris Naydenov | Scripts for quantifying the effect of diamond nano-pillars on the fluorescence of NV centers | Zenodo, 2022 |
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Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger | Source code and simulation data for Computation of eigenfrequency sensitivities using Riesz projections for efficient optimization of nanophotonic resonators | Zenodo, 2022 |
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Fridtjof Betz, Felix Binkowski, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Source code and simulation results for computing resonance expansions of quadratic quantities with regularized quasinormal modes | Zenodo, 2022 |
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Remi Colom, Felix Binkowski, Fridtjof Betz, Yuri Kivshar, Sven Burger | Source code and simulation results for nanoantennas supporting an enhanced Purcell factor due to interfering resonances | Zenodo, 2022 |
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Maximilian Engel, Guillermo Olicón-Méndez, Nathalie Unger, Stefanie Winkelmann | Synchronization and random attractors for reaction jump processes | 2022 (under review) |
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Tillmann Krüger, Brigitte Leeners, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Harald Engler, Susanna Röblitz, Helge Frieling, Christopher Sinke, Kirsten Jahn | The androgen system across the menstrual cycle: Hormonal, (epi-)genetic and psychometric alterations | Physiology and Behavior, 2022 |
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Artur Movsesyan, Eva Yazmin Santiago, Sven Burger, Miguel Correa-Duarte, Lucas V. Besteiro, Zhiming Wang, Alexander O. Govorov | The anisotropy of hot carriers’ spatial distribution contrasts the isotropy of photothermal effects in complex and small plasmonic nanocrystals with complex shapes | The 12th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2022), S. Zouhdi (Ed.), p. 285, 2022 |
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Xavier Garcia Santiago, Martin Hammerschmidt, Johannes Sachs, Sven Burger, Hyunah Kwon, Marvin Knöller, Tilo Arens, Peer Fischer, Ivan Fernandez-Corbaton, Carsten Rockstuhl | Toward maximally electromagnetically chiral scatterers at optical frequencies | ACS Photonics, Vol.9, p. 1954, 2022 |
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DOI arXiv |
Eduardo Lopez-Fraguas, Felix Binkowski, Sven Burger, Sylvia Hagedorn, Braulio Garcia-Camara, Ricardo Vergaz, Christiane Becker, Phillip Manley | Tripling the light extraction efficiency of a deep ultraviolet LED using a nanostructured p-contact | Sci. Rep., Vol.12, p. 11480, 2022 |
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Jan Krüger, Phillip Manley, Lin Zschiedrich, Martin Hammerschmidt, Philipp-Immanuel Schneider, Rainer Köning, Bernd Bodermann | Untersuchung des Schwingungseinflusses auf gemessene Punktspreizfunktionen in der optischen Mikroskopie | Proc. DGaO, p. P5, 2022 |
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Mihir Dass, Lilli Kuen, Gregor Posnjak, Sven Burger, Tim Liedl | Visible wavelength spectral tuning of absorption and circular dichroism of DNA-assembled Au/Ag core-shell nanorod assemblies | Mater. Adv., Vol.3, p. 3438, 2022 |
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2021 |
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Nada Cvetkovic, Tim Conrad, Han Cheng Lie | A Convergent Discretisation Method for Transition Path Theory for Diffusion Processes | Multiscale Modeling & Simulation, 19(1), pp. 242-266, 2021 |
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Ralf Borndörfer, Fabian Danecker, Martin Weiser | A Discrete-Continuous Algorithm for Free Flight Planning | Algorithms, 14(1), p. 4, 2021 (preprint available as ) |
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Hans Christian Öttinger, Alberto Montefusco, Mark A. Peletier | A Framework of Nonequilibrium Statistical Mechanics. I. Role and Types of Fluctuations | Journal of Non-Equilibrium Thermodynamics, 46(1), pp. 1-13, 2021 |
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Alberto Montefusco, Mark A. Peletier, Hans Christian Öttinger | A Framework of Nonequilibrium Statistical Mechanics. II. Coarse-Graining | Journal of Non-Equilibrium Thermodynamics, 46(1), pp. 15-33, 2021 |
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Christoph Gorgulla, Krishna M. Padmanabha Das, Kendra E Leigh, Marco Cespugli, Patrick D. Fischer, Zi-Fu Wang, Guilhem Tesseyre, Shreya Pandita, Alex Shnapir, Anthony Calderaio, Colin Hutcheson, Minko Gechev, Alexander Rose, Noam Lewis, Erez Yaffe, Roni Luxenburg, Henry D. Herce, Vedat Durmaz, Thanos D. Halazonetis, Konstantin Fackeldey, Justin J. Patten, Alexander Chuprina, Igor Dziuba, Alla Plekhova, Yurii Moroz, Dmytro Radchenko, Olga Tarkhanova, Irina Yavnyuk, Christian C. Gruber, Ryan Yust, Dave Payne, Anders M. Näär, Mark N. Namchuk, Robert A. Davey, Gerhard Wagner, Jamie Kinney, Haribabu Arthanari | A Multi-Pronged Approach Targeting SARS-CoV-2 Proteins Using Ultra-Large Virtual Screening | iScience, 24(2), p. 102021, 2021 |
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Lucas Rickert, Timm Gao, Felix Urban, Jan Große, Nicole Srocka, Sven Rodt, Anna Musial, Kinga Zolnacz, Pawel Mergo, Kamil Dybka, Waclaw Urbanczyk, Grzegorz Sek, Sven Burger, Stephan Reitzenstein, Heindel Tobias | A Quantum Key Distribution Testbed Using Plug&Play Telecom-Wavelength Single-Photons | Quantum Information and Measurement VI, p. M2C.1, OSA Technical Digest, 2021 |
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Anton Schiela, Matthias Stöcklein, Martin Weiser | A primal dual projection algorithm for efficient constraint preconditioning | SIAM Journal on Scientific Computing, 43(6), pp. A4095-A4120, 2021 |
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Andreas Bittracher, Christof Schütte | A probabilistic algorithm for aggregating vastly undersampled large Markov chains | Physica D: Nonlinear Phenomena, Vol.416, 2021 (preprint available as ) |
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Philipp-Immanuel Schneider, Xavier Garcia-Santiago, Benjamin Wiegand, Oliver Anton, Markus Krutzik, Carsten Rockstuhl, Sven Burger | Advances in Bayesian optimization for photonics and quantum atom optics applications | OSA Advanced Photonics Congress, p. JTh1E.2, OSA Technical Digest, 2021 |
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Jan-Hendrik Niemann, Stefanie Winkelmann, Sarah Wolf, Christof Schütte | Agent-based modeling: Population limits and large timescales | Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021 |
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Konstantin Fackeldey, Jonas Röhm, Amir Niknejad, Surahit Chewle, Marcus Weber | Analyzing Raman Spectral Data without Separabiliy Assumption | Journal of Mathematical Chemistry, 3(59), pp. 575-596, 2021 |
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Yongtao Liu, Zhiguang Zhou, Fan Wang, Günter Kewes, Shihui Wen, Sven Burger, Majid Ebrahimi Wakiani, Peng Xi, Jiong Yang, Xusan Yang, Oliver Benson, Dayong Jin | Axial localization and tracking of self-interference nanoparticles by lateral point spread functions | Nat. Commun., Vol.12, p. 2019, 2021 |
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Xavier Garcia Santiago, Sven Burger, Carsten Rockstuhl, Philipp-Immanuel Schneider | Bayesian optimization with improved scalability and derivative information for efficient design of nanophotonic structures | J. Light. Technol., Vol.39, p. 167, 2021 |
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DOI arXiv |
Alejandro Carderera, Sebastian Pokutta, Christof Schütte, Martin Weiser | CINDy: Conditional gradient-based Identification of Non-linear Dynamics – Noise-robust recovery | Journal of Computational and Applied Mathematics, 2021 (under review) |
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arXiv |
Florian Schäfer, T. J. Sullivan, Houman Owhadi | Compression, inversion, and approximate PCA of dense kernel matrices at near-linear computational complexity | Multiscale Modeling and Simulation, 19(2), pp. 688-730, 2021 |
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arXiv DOI |
Susanne Röhl, Marcus Weber, Konstantin Fackeldey | Computing the minimal rebinding effect for non-reversible processes | Multiscale Modeling and Simulation, 19(1), pp. 460-477, 2021 |
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arXiv DOI |
Felix Binkowski, Fridtjof Betz, Remi Colom, Martin Hammerschmidt, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger | Contour integral methods for resonance phenomena in nano-optics | The 11th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2021), S. Zouhdi, D. Pawlak, A. Kudelski (Eds.), p. 523, 2021 |
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Margarita Kostre, Christof Schütte, Frank Noé, Mauricio del Razo Sarmina | Coupling Particle-Based Reaction-Diffusion Simulations with Reservoirs Mediated by Reaction-Diffusion PDEs | Multiscale Modeling & Simulation, 19(4), pp. 1659-1683, 2021 |
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arXiv DOI |
Jan-Hendrik Niemann, Stefan Klus, Christof Schütte | Data-driven model reduction of agent-based systems using the Koopman generator | PLOS ONE, 16(5), 2021 |
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arXiv DOI |
Peter Schnauber, Johannes Schall, Samir Bounouar, Kartik Srinivasan, Marcelo Davanco, Jin-Dong Song, Sven Burger, Sven Rodt, Stephan Reitzenstein | Deterministically fabricated quantum dot – waveguide systems for on-chip quantum optics | Proc. SPIE, p. 118060G, Vol.11806, 2021 |
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N. Alexia Raharinirina, Marcus Weber, Ralph Birk, Konstantin Fackeldey, Sarah M. Klasse, Tonio Sebastian Richter | Different Tools and Results for Correspondence Analysis | 2021 |
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Andreas Bittracher, Stefan Klus, Boumediene Hamzi, Christof Schütte | Dimensionality Reduction of Complex Metastable Systems via Kernel Embeddings of Transition Manifolds | Journal of Nonlinear Science, Vol.31, 2021 |
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Phillip Manley, Michele Segantini, Doguscan Ahiboz, Martin Hammerschmidt, Georgios Arnaoutakis, Rowan W. MacQueen, Sven Burger, Christiane Becker | Double-layer metasurface for enhanced photon up-conversion | APL Photon., Vol.6, p. 036103, 2021 |
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DOI arXiv |
Fatemeh Chegini, Alena Kopanicakova, Rolf Krause, Martin Weiser | Efficient Identification of Scars using Heterogeneous Model Hierarchies | EP Europace, Vol.23, pp. i113-i122, 2021 |
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Tong Wu, Denis Arrivault, Marc Duruflé, Alexandre Gras, Felix Binkowski, Sven Burger, Wei Yan, Philippe Lalanne | Efficient hybrid method for the modal analysis of optical microcavities and nanoresonators | J. Opt. Soc. Am. A, Vol.38, p. 1224, 2021 |
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Anton Pakhomov | Efficient modeling and optimization of surface second-harmonic generation from nanophotonic components | Doctoral thesis, Friedrich-Schiller-Universität Jena, Thomas Pertsch, Costantino De Angelis, Yuri Kivshar (Advisors), 2021 |
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Doguscan Ahiboz, Elina Andresen, Phillip Manley, Ute Resch Genger, Christian Würth, Christiane Becker | Enhanced Photon Upconversion Using Erbium-Doped Nanoparticles Interacting with Silicon Metasurfaces | IEEE 48th Photovoltaic Specialists Conference (PVSC), pp. 2008-2010, 2021 |
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Han Cheng Lie, T. J. Sullivan, Aretha Teckentrup | Error bounds for some approximate posterior measures in Bayesian inference | Numerical Mathematics and Advanced Applications ENUMATH 2019, pp. 275-283, 2021 |
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arXiv DOI |
Renata Sechi, Alexander Sikorski, Marcus Weber | Estimation of the Koopman Generator by Newton's Extrapolation | Multiscale Modeling and Simulation, 19(2), pp. 758-774, 2021 |
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Alexander Mielke, Alberto Montefusco, Mark A. Peletier | Exploring families of energy-dissipation landscapes via tilting: three types of EDP convergence | Continuum Mechanics and Thermodynamics, Vol.33, pp. 611-637, 2021 |
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Horst-Holger Boltz, Jorge Kurchan, Andrea J. Liu | Fluctuation distributions of energy minima in complex landscapes | Physical Review Research, 3(1), p. 013061, 2021 |
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Luzie Helfmann, Natasa Djurdjevac Conrad, Ana Djurdjevac, Stefanie Winkelmann, Christof Schütte | From interacting agents to density-based modeling with stochastic PDEs | Communications in Applied Mathematics and Computational Science, 16(1), pp. 1-32, 2021 (preprint available as ZIB-Report 19-21) |
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Anna Andrle, Philipp Hönicke, Grzegorz Gwalt, Philipp-Immanuel Schneider, Yves Kayser, Frank Siewert, Victor Soltwisch | GIXRF and machine learning as metrological tools for shape and element sensitive reconstructions of periodic nanostructures | Proc. SPIE, Vol.11611, p. 116110R, 2021 |
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Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende | HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids | Euro-Par 2020: Parallel Processing Workshops., pp. 185-196, 2021 |
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Felix Binkowski, Tong Wu, Philippe Lalanne, Sven Burger, Alexander O. Govorov | Hot Electron Generation through Near-Field Excitation of Plasmonic Nanoresonators | ACS Photonics, Vol.8, p. 1243, 2021 |
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DOI arXiv |
Jakob Schneck, Martin Weiser, Florian Wende | Impact of mixed precision and storage layout on additive Schwarz smoothers | Numerical Linear Algebra with Applications, 28(4), 2021 (preprint available as ZIB-Report 18-62) |
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Sebastian Götschel, Anton Schiela, Martin Weiser | Kaskade 7 - a Flexible Finite Element Toolbox | Computers and Mathematics with Applications, Vol.81, pp. 444-458, 2021 (preprint available as ZIB-Report 19-48) |
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Ana Djurdjevac | Linear Parabolic Problems in Random Moving Domains | 9(2), pp. 848-879, 2021 |
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Isabel Nitzke, Konstantin Fackeldey, Jadran Vrabec | Long range corrections for inhomogeneous fluids containing a droplet or a bubble | Molecular Simulation, pp. 1-14, 2021 |
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Kevin Martens, Felix Binkowski, Linh Nguyen, Li Hu, Alexander O. Govorov, Sven Burger, Tim Liedl | Long- and Short-Ranged Chiral Interactions in DNA Assembled Plasmonic Chains | Nat. Commun., Vol.12, p. 2025, 2021 |
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arXiv DOI |
Sophie Fischer, Rainald Ehrig, Stefan Schäfer, Enrico Tronci, Toni Mancini, Marcel Egli, Fabian Ille, Tillmann H. C. Krüger, Brigitte Leeners, Susanna Röblitz | Mathematical Modelling and Simulation Provides Evidence for New Strategies of Ovarian Stimulation | Frontiers in Endocrinology, Vol.12, 2021 |
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Stefanie Winkelmann, Johannes Zonker, Christof Schütte, Natasa Djurdjevac Conrad | Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading | Mathematical Biosciences, Vol.336, 2021 |
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DOI arXiv |
Niklas Wulkow, Péter Koltai, Christof Schütte | Memory-Based Reduced Modelling and Data-Based Estimation of Opinion Spreading | Journal of Nonlinear Science, Vol.31, 2021 |
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Doguscan Ahiboz, Elina Andresen, Phillip Manley, Ute Resch-Genger, Christian Würth, Christiane Becker | Metasurface-Enhanced Photon Upconversion upon 1550 nm Excitation | Adv. Opt. Mater., Vol.9, p. 2101285, 2021 |
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Anton V. Pakhomov, Martin Hammerschmidt, Sven Burger, Thomas Pertsch, Frank Setzpfand | Modeling of surface-induced second-harmonic generation from multilayer structures by the transfer matrix method | Opt. Express, Vol.29, p. 9098, 2021 |
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Sourav Ray, Arne Thies, Vikram Sunkara, Hanna Wulkow, Özgür Celik, Fatih Yergöz, Christof Schütte, Christoph Stein, Marcus Weber, Stefanie Winkelmann | Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design | ZIB-Report 21-19 |
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Rolf Krause, Martin Weiser | Multilevel augmented Lagrangian solvers for overconstrained contact formulations | ESAIM: ProcS, pp. 175-184, Vol.71, 2021 |
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Christiane Becker, Klaus Jäger, Sven Burger | Nanophotonics for Solar Energy | Sol. Energy Mater. Sol. Cells, Vol.221, p. 110916, 2021 |
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Konstantin Fackeldey, Christoph Gorgulla, Marcus Weber | Neue Medikamente dank Supercomputern | Spektrum der Wissenschaft, pp. 40-46, 2021 |
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Ana Djurdjevac, Carsten Gräser, Philip J. Herbert | Non-stationary incompressible linear fluid equations in a moving domain | arXiv, 2021 |
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arXiv |
Xavier Garcia Santiago | Numerical methods for shape optimization of photonic nanostructures | Doctoral thesis, Karlsruher Institut für Technologie, Carsten Rockstuhl (Advisor), 2021 |
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Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz | Objective priors in the empirical Bayes framework | Scandinavian Journal of Statistics, 48(4), pp. 1212-1233, 2021 |
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Cem Güney Torun, Philipp-Immanuel Schneider, Martin Hammerschmidt, Sven Burger, Joseph H.D. Munns, Tim Schröder | Optimized diamond inverted nanocones for enhanced color center to fiber coupling | Appl. Phys. Lett., Vol.118, p. 234002, 2021 |
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DOI arXiv |
Peter Tillmann, Benedikt Bläsi, Sven Burger, Martin Hammerschmidt, Oliver Höhn, Christiane Becker, Klaus Jäger | Optimizing metal grating back reflectors for III-V-on-silicon multijunction solar cells | Opt. Express, Vol.29, p. 22517, 2021 |
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Klaus Jäger, Peter Tillmann, Eugene A. Katz, Christiane Becker | Perovskite/silicon tandem solar cells: Effect of luminescent coupling and bifaciality | Sol. RRL, Vol.5, p. 2000628, 2021 |
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arXiv DOI |
Dmitrii Perevoznik, Surajit Bose, Sven Burger, Ayhan Demircan, Uwe Morgner | Photonic components in polymers made by femtosecond pulses | Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference (CLEO/Europe-EQEC), p. 1, 2021 |
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Hanna Wulkow, Tim Conrad, Natasa Djurdjevac Conrad, Sebastian A. Müller, Kai Nagel, Christof Schütte | Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts | PLOS One, 16(4), 2021 |
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Klaus Jäger, Johannes Sutter, Martin Hammerschmidt, Philipp-Immanuel Schneider, Christiane Becker | Prospects of light management in perovskite/silicon tandem solar cells | Nanophotonics, Vol.10, p. 1991, 2021 |
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Horst-Holger Boltz, Alexei Sirbu, Nina Stelzer, Martin J. Lohse, Christof Schütte, Paolo Annibale | Quantitative spectroscopy of single molecule interaction times | Optic Letters, 46(7), pp. 1538-1541, 2021 |
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Fridtjof Betz, Felix Binkowski, Sven Burger | RPExpand: Software for Riesz projection expansion of resonance phenomena | SoftwareX, Vol.15, p. 100763, 2021 |
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Fridtjof Betz, Felix Binkowski, Sven Burger | RPExpand: Software for Riesz projection expansion of resonance phenomena [Source Code] | 2021 |
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Matthias Plock, Sven Burger, Philipp-Immanuel Schneider | Recent advances in Bayesian optimization with applications to parameter reconstruction in optical nano-metrology | Proc. SPIE, Vol.11783, p. 117830J, 2021 |
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DOI arXiv |
Peter Tillmann, Klaus Jäger, Eugene Katz, Christiane Becker | Relaxed current-matching constraints by bifacial operation and luminescent coupling in perovskite/silicon tandem solar cells | 2021 IEEE 48th Photovoltaic Specialists Conference (PVSC), p. 1086, 2021 |
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Anna Andrle, Philipp Hönicke, Grzegorz Gwalt, Philipp-Immanuel Schneider, Yves Kayser, Frank Siewert, Victor Soltwisch | Shape- and Element-Sensitive Reconstruction of Periodic Nanostructures with Grazing Incidence X-ray Fluorescence Analysis and Machine Learning | Nanomaterials, Vol.11, p. 1647, 2021 |
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Brian Stout, Remi Colom, Nicolas Bonod, Ross C McPhedran | Spectral expansions of open and dispersive optical systems: Gaussian regularization and convergence | New J. Phys., Vol.23, p. 083004, 2021 |
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Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling | Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles | J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021 |
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Alexander Sikorski, Marcus Weber, Christof Schütte | The Augmented Jump Chain | Advanced Theory and Simulations, 4(4), 2021 |
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arXiv DOI |
Ilja Klebanov, Björn Sprungk, T. J. Sullivan | The linear conditional expectation in Hilbert space | Bernoulli, 27(4), pp. 2299-2299, 2021 |
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arXiv DOI |
Pietro Tierno, Tom H. Johansen, Arthur Straube | Thermally active nanoparticle clusters enslaved by engineered domain wall traps | Nature Commun., Vol.12, p. 5813, 2021 |
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Philippe Miron, Francisco Beron-Vera, Luzie Helfmann, Péter Koltai | Transition paths of marine debris and the stability of the garbage patches | Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(3), 2021 |
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arXiv DOI |
Ariane Ernst, Christof Schütte, Stephan Sigrist, Stefanie Winkelmann | Variance of filtered signals: Characterization for linear reaction networks and application to neurotransmission dynamics | ZIB-Report 21-15 (Mathematical Biosciences 343:108760) |
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Dmitrii Perevoznik, Surajit Bose, Sven Burger, Ayhan Demircan, Uwe Morgner | Writing Photonic Components in Polymers Using Femtosecond Pulses | Conference on Lasers and Electro-Optics (CLEO), p. ATh4P.4, OSA Technical Digest, 2021 |
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Felix Binkowski, Lin Zschiedrich, Sven Burger | A Riesz-projection-based method for nonlinear eigenvalue problems | J. Comput. Phys., Vol.419, p. 109678, 2020 |
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DOI arXiv |
Ilja Klebanov, Ingmar Schuster, T. J. Sullivan | A rigorous theory of conditional mean embeddings | SIAM Journal on Mathematics of Data Science, 2(3), pp. 583-606, 2020 |
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arXiv DOI |
Andreas Bittracher, Christof Schütte | A weak characterization of slow variables in stochastic dynamical systems | Advances in Dynamics, Optimization and Computation. Series: Studies in Systems, Decision and Control. A volume dedicated to Michael Dellnitz on the occasion of his 60th birthday, Vol.304, pp. 132-150, Oliver Junge, O. Schütze, Gary Froyland, S. Ober-Blobaum, E. Padberg-Gehle (Eds.), Springer International, 2020, ISBN: 978-3-030-51264-4 |
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Christoph Gorgulla, Konstantin Fackeldey, Gerhard Wagner, Haribabu Arthanari | Accounting of Receptor Flexibility in Ultra-Large Virtual Screens with VirtualFlow Using a Grey Wolf Optimization Method | Supercomputing Frontiers and Innovations, 7(3), pp. 4-12, 2020 |
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Luc Bonnet, Jean-Luc Akian, Éric Savin, T. J. Sullivan | Adaptive reconstruction of imperfectly-observed monotone functions, with applications to uncertainty quantification | Algorithms, 13(8), p. 196, 2020 |
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DOI arXiv |
Christoph Gorgulla, Andras Boeszoermnyi, Zi-Fu Wang, Patrick D. Fischer, Paul Coote, Krishna M. Padmanabha Das, Yehor S. Malets, Dmytro S. Radchenko, Yurii Moroz, David A. Scott, Konstantin Fackeldey, Moritz Hoffmann, Iryna Iavniuk, Gerhard Wagner, Haribabu Arthanari | An open-source drug discovery platform enables ultra-large virtual screens | Nature, Vol.580, pp. 663-668, 2020 |
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Ralph L. Stoop, Arthur Straube, Tom H. Johansen, Pietro Tierno | Collective directional locking of colloidal monolayers on a periodic substrate | Phys. Rev. Lett., Vol.124, p. 058002, 2020 |
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Vikram Sunkara, Gitta A. Heinz, Frederik F. Heinrich, Pawel Durek, Ali Mobasheri, Mir-Farzin Mashreghi, Annemarie Lang | Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint | bioarxiv (Accepted in Osteoarthr. Cartil.), 2020 |
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Hans Kersting, T. J. Sullivan, Philipp Hennig | Convergence rates of Gaussian ODE filters | Statistics and Computing, Vol.30, pp. 1791-1816, 2020 |
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arXiv DOI |
Marcus Weber, Weitere Autoren | DIN SPEC 2343: Übertragung von sprachbasierten Daten zwischen Künstlichen Intelligenzen - Festlegung von Parametern und Formaten | Beuth Verlag, 2020 |
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Stefan Klus, Feliks Nüske, Sebastian Peitz, Jan-Hendrik Niemann, Cecilia Clementi, Christof Schütte | Data-driven approximation of the Koopman generator: Model reduction, system identification, and control | Physica D: Nonlinear Phenomena, Vol.406, 2020 (epub ahead of print) |
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Klaus Jäger, Peter Tillmann, Christiane Becker | Detailed illumination model for bifacial solar cells | Opt. Express, Vol.28, p. 4751, 2020 |
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Sven Rodt, Philipp-Immanuel Schneider, Lin Zschiedrich, Tobias Heindel, Samir Bounouar, Markus Kantner, Thomas Koprucki, Uwe Bandelow, Sven Burger, Stephan Reitzenstein | Deterministic Quantum Devices for Optical Quantum Communication | Semiconductor Nanophotonics, Michael Kneissl, Andreas Knorr, Stephan Reitzenstein, Axel Hoffmann (Eds.), Springer: Cham, pp. 285-359, 2020 |
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Paweł Mrowiński, Peter Schnauber, Arsenty Kaganskiy, Johannes Schall, Sven Burger, Sven Rodt, Stephan Reitzenstein | Directional single-photon emission from deterministic quantum dot waveguide structures | Phys. Status Solidi RRL, Vol.14, p. 2000115, 2020 |
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DOI arXiv |
Surahit Chewle, Franziska Emmerling, Marcus Weber | Effect of choice of solvent on crystallization pathway of Paracetamol: An experimental and theoretical case study | Crystals, 10(12), p. 1107, 2020 |
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Nando Farchmin, Martin Hammerschmidt, Philipp-Immanuel Schneider, Matthias Wurm, Bernd Bodermann, Markus Bär, Sebastian Heidenreich | Efficient Bayesian inversion for shape reconstruction of lithography masks | J. Micro/Nanolith. MEMS MOEMS, Vol.19, p. 024001, 2020 |
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Luzie Helfmann, Enric Ribera Borrell, Christof Schütte, Peter Koltai | Extending Transition Path Theory: Periodically Driven and Finite-Time Dynamics | Journal of Nonlinear Science, Vol.30, pp. 3321-3366, 2020 |
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Mika Pflüger, R. Joseph Kline, Analia Fernández Herrero, Martin Hammerschmidt, Victor Soltwisch, Michael Krumrey | Extracting dimensional parameters of gratings produced with self-aligned multiple patterning using grazing-incidence small-angle x-ray scattering | J. Micro Nanolithogr. MEMS MOEMS, Vol.19, p. 014001, 2020 |
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DOI arXiv |
Mika Pflüger, R Joseph Kline, Analía Fernández Herrero, Martin Hammerschmidt, Victor Soltwisch, Michael Krumrey | Extracting dimensional parameters of gratings produced with self-aligned multiple patterning using grazing-incidence small-angle x-ray scattering [Source Code] | 2020 |
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Anton Pakhomov, Franz Löchner, Lin Zschiedrich, Sina Saravi, Martin Hammerschmidt, Sven Burger, Thomas Pertsch, Frank Setzpfand | Far-field polarization signatures of surface optical nonlinearity in noncentrosymmetric semiconductors | Sci. Rep., Vol.10, p. 10545, 2020 |
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Martin Hammerschmidt, Sandra Döpking, Sven Burger, Sebastian Matera | Field Heterogeneities and Their Impact on Photocatalysis: Combining Optical and Kinetic Monte Carlo Simulations on the Nanoscale | J. Phys. Chem. C, Vol.124, p. 3177, 2020 (preprint available as ZIB-Report 17-20) |
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Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker | Flat optics in high numerical aperture broadband imaging systems | J. Opt., Vol.22, p. 065607, 2020 |
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Anna Musiał, Kinga Żołnacz, Nicole Srocka, Oleh Kravets, Jan Große, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wojcik, Paweł Mergo, Kamil Dybka, Mariusz Dyrkacz, Michal Dlubek, Kristian Lauritsen, Andreas Bülter, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger, Sven Rodt, Wacław Urbanczyk, Grzegorz Sek, Stephan Reitzenstein | Front Cover: Plug&Play Fiber‐Coupled 73 kHz Single‐Photon Source Operating in the Telecom O‐Band (Adv. Quantum Technol. 6/2020) | Adv. Quantum Technol., Vol.3, p. 2070061, 2020 |
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Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker | General design formalism for highly efficient flat optics for broadband applications | Opt. Express, Vol.28, p. 6452, 2020 |
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Bernhard Reuter | Generalisierte Markov-Modellierung | Springer Spektrum, Wiesbaden, 2020, ISBN: 978-3-658-29711-4 |
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Annemarie Lang, Sarah Helfmeier, Jonathan Stefanowski, Aditi Kuppe, Vikram Sunkara, Moritz Pfeiffenberger, Angelique Wolter, Alexandra Damerau, Shabnam Hemmati-Sadeghi, Jochen Ringe, Rainer Haag, Anja E. Hauser, Max Löhning, Carsten Perka, Georg Duda, Paula Hoff, Katharina Schmidt-Bleek, Timo Gaber, Frank Buttgereit | HIF-stabilization prevents delayed fracture healing | bioarxiv, 2020 (under review) |
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Joshua Feis, Dominik Beutel, Julian Köpfler, Xavier Garcia Santiago, Carsten Rockstuhl, Martin Wegener, Ivan Fernandez-Corbaton | Helicity-Preserving Optical Cavity Modes for Enhanced Sensing of Chiral Molecules | Phys. Rev. Lett., Vol.124, p. 033201, 2020 |
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Larousse Khosravi Khorashad, Lucas V. Besteiro, Miguel Correa-Duarte, Sven Burger, Zhiming M. Wang, Alexander O. Govorov | Hot electrons generated in chiral plasmonic nanocrystals as a mechanism for surface photochemistry and chiral growth | J. Am. Chem. Soc., Vol.142, p. 4193, 2020 |
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Sourav Ray, Vikram Sunkara, Christof Schütte, Marcus Weber | How to calculate pH-dependent binding rates for receptor-ligand systems based on thermodynamic simulations with different binding motifs | Molecular Simulation, 46(18), pp. 1443-1452, 2020 (preprint available as ) |
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Robert Julian Rabben, Sourav Ray, Marcus Weber | ISOKANN: Invariant subspaces of Koopman operators learned by a neural network | The Journal of Chemical Physics, 153(11), p. 114109, 2020 |
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Felix Baumann | Impact of Contact Surfaces on the Death Estimation | Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Martin Weiser (Advisors), 2020 |
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Philipp Tockhorn, Johannes Sutter, Rémi Colom, Lukas Kegelmann, Amran Al-Ashouri, Marcel Roß, Klaus Jäger, Thomas Unold, Sven Burger, Steve Albrecht, Christiane Becker | Improved Quantum Efficiency by Advanced Light Management in Nanotextured Solution-Processed Perovskite Solar Cells | ACS Photonics, Vol.7, p. 2589, 2020 |
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Vikram Sunkara, N. Alexia Raharinirina, Felix Peppert, Max von Kleist, Christof Schütte | Inferring Gene Regulatory Networks from Single Cell RNA-seq Temporal Snapshot Data Requires Higher Order Moments | ZIB-Report 20-25 |
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Fridtjof Betz | Investigation and application of contour integral methods for resonance expansion in nanophotonics | Master's thesis, Freie Universität Berlin, Sven Burger, Ana-Nicoleta Bondar (Advisors), 2020 |
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Marie-Christin Weber, Lisa Fischer, Alexandra Damerau, Igor Ponomarev, Moritz Pfeiffenberger, Timo Gaber, Sebastian Götschel, Jens Lang, Susanna Röblitz, Frank Buttgereit, Rainald Ehrig, Annemarie Lang | Macroscale mesenchymal condensation to study cytokine-driven cellular and matrix-related changes during cartilage degradation | Biofabrication, 12(4), 2020 |
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Ilja Klebanov, Ingmar Schuster | Markov Chain Importance Sampling - a highly efficient estimator for MCMC | Journal of Computational and Graphical Statistics, 2020 (epub ahead of print) |
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Neveen Ali Salem Eshtewy | Mathematical Modeling of Metabolic-Genetic Networks | Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2020 |
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Christian Würth, Phillip Manley, Robert Voigt, Doguscan Ahiboz, Christiane Becker, Ute Resch-Genger | Metasurface enhanced sensitized photon upconversion: towards highly efficient low power upconversion applications and nano-scale E-field sensors | Nano Lett., Vol.20, p. 6682, 2020 |
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Peter Tillmann, Klaus Jäger, Christiane Becker | Minimising levelised cost of electricity of bifacial solar panel arrays using Bayesian optimisation | Sustain. Energy Fuels, Vol.4, p. 254, 2020 |
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Phillip Semler | Mixed finite elements in cloth simulation | Master's thesis, Beuth Hochschule für Technik Berlin, Martin Weiser, Frank Haußer (Advisors), 2020 |
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Rémi Colom, Brian Stout, Nicolas Bonod | Modal Expansion of the Impulse Response Function for Predicting the Time Dynamics of Open Optical Cavities | arXiv, 2020 (under review) |
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arXiv |
Felix Binkowski, Fridtjof Betz, Rémi Colom, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Modal expansion of optical far-field quantities using quasinormal modes | EPJ Web Conf., p. 05007, Vol.238, 2020 |
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Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz | Model-based exploration of the impact of glucose metabolism on the estrous cycle dynamics in dairy cows | Biology Direct, Vol.15, 2020 |
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Daniel Werdehausen, Xavier Garcia Santiago, Sven Burger, Isabelle Staude, Thomas Pertsch, Carsten Rockstuhl, Manuel Decker | Modeling Optical Materials at the Single Scatterer Level: The Transition from Homogeneous to Heterogeneous Materials | Adv. Theory Simul., Vol.3, p. 2000192, 2020 |
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Markus Kantner, Theresa Höhne, Thomas Koprucki, Sven Burger, Hans-Jürgen Wünsche, Frank Schmidt, Alexander Mielke, Uwe Bandelow | Multi-dimensional modeling and simulation of semiconductor nanophotonic devices | Semiconductor Nanophotonics, Michael Kneissl, Andreas Knorr, Stephan Reitzenstein, Axel Hoffmann (Eds.), Springer: Cham, pp. 241-283, 2020 |
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Phillip Manley, Sebastian Walde, Sylvia Hagedorn, Martin Hammerschmidt, Sven Burger, Christiane Becker | Nanopatterned Sapphire Substrates in Deep-UV LEDs: Is there an Optical Benefit? | Opt. Express, Vol.28, p. 3619, 2020 |
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Peter Deuflhard, Martin Weiser | Numerische Mathematik 3. Adaptive Lösung partieller Differentialgleichungen | de Gruyter, 2, 2020, ISBN: 978-3-11-069168-9 |
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Philip Scott, Xavier Garcia Santiago, Dominik Beutel, Carsten Rockstuhl, Martin Wegener, Ivan Fernandez-Corbaton | On enhanced sensing of chiral molecules in optical cavities | Appl. Phys. Rev., Vol.7, p. 041413, 2020 |
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Chris Oates, Jon Cockayne, Dennis Prangle, T. J. Sullivan, Mark Girolami | Optimality criteria for probabilistic numerical methods | Multivariate Algorithms and Information-Based Complexity, Vol.27, pp. 65-88, F. J. Hickernell, P. Kritzer (Eds.), De Gruyter, 2020 |
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arXiv DOI |
Anna Musiał, Kinga Żołnacz, Nicole Srocka, Oleh Kravets, Jan Große, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wojcik, Paweł Mergo, Dybka Kamil, Mariusz Dyrkacz, Michal Dlubek, Kristian Lauritsen, Andreas Bülter, Philipp-Immanuel Schneider, Lin Zschiedrich, Sven Burger, Sven Rodt, Wacław Urbanczyk, Grzegorz Sek, Stephan Reitzenstein | Plug&play fibre-coupled 73 kHz single-photon source operating in the telecom O-band | Adv. Quantum Technol., Vol.3, p. 2000018, 2020 |
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DOI arXiv |
Liping Shi, Andrey B. Evlyukhin, Carsten Reinhardt, Ihar Babushkin, Vladimir A. Zenin, Sven Burger, Radu Malureanu, Boris N. Chichkov, Uwe Morgner, Milutin Kovacev | Progressive Self-Boosting Anapole-Enhanced Deep-Ultraviolet Third Harmonic During Few-Cycle Laser Radiation | ACS Photonics, Vol.7, p. 1655, 2020 |
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Sónia Alves, Rainald Ehrig, Peter C. Raffalt, Alwina Bender, Georg Duda, Alison N. Agres | Quantifying Asymmetry in Gait: A Weighted Universal Symmetry Index to Evaluate 3D Ground Reaction Forces | Frontiers in Bioengineering and Biotechnology, 2020 |
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Thomas Siefke, Carol Hurtado, Johannes Dickmann, Walter Dickmann, Tim Käseberg, Jan Meyer, Sven Burger, Uwe Zeitner, Bernd Bodermann, Stefanie Kroker | Quasi-bound states in the continuum for deep subwavelength structural information retrieval for DUV nano-optical polarizers | Opt. Express, Vol.28, p. 23122, 2020 |
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Rémi Colom, Felix Binkowski, Fridtjof Betz, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Quasi-normal mode expansion as a tool for the design of nanophotonic devices | EPJ Web Conf., p. 05008, Vol.238, 2020 |
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Felix Binkowski, Fridtjof Betz, Rémi Colom, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Quasinormal mode expansion of optical far-field quantities | Phys. Rev. B, Vol.102, p. 035432, 2020 |
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arXiv DOI |
Arthur Straube, Bartosz G. Kowalik, Roland R. Netz, Felix Höfling | Rapid onset of molecular friction in liquids bridging between the atomistic and hydrodynamic pictures | Commun. Phys., Vol.3, p. 126, 2020 |
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Hanna Wulkow | Regularization of Elliptic Partial Differential Equations using Neural Networks | Master's thesis, Freie Universität Berlin, Christof Schütte, Martin Weiser (Advisors), 2020 |
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Narendra Lagumaddepalli Venkatareddy | Revealing secrets of mussel-glue mimetic peptides - From advanced NMR to computational process modelling | Doctoral thesis, Humboldt-Universität zu Berlin, Hans Börner, Marcus Weber (Advisors), 2020 |
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Philipp Gutsche, Xavier Garcia Santiago, Philipp-Immanuel Schneider, Kevin McPeak, Manuel Nieto-Vesperinas, Sven Burger | Role of Geometric Shape in Chiral Optics | Symmetry, Vol.12, p. 158, 2020 |
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DOI arXiv |
Klaus Jäger, Peter Tillmann, Eugene A. Katz, Christiane Becker | Simulating bifacial perovskite/silicon tandem solar cells in large PV fields | OSA Advanced Photonics Congress, p. PvTh1G.3, OSA Technical Digest, 2020 |
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Jan Möller, Ali Isbilir, Titiwat Sungkaworn, Brenda Osberg, Christos Karathanasis, Vikram Sunkara, Eugene O Grushevsky, Andreas Bock, Paolo Annibale, Mike Heilemann, Christof Schütte, Martin J. Lohse | Single molecule mu-opioid receptor membrane-dynamics reveal agonist-specific dimer formation with super-resolved precision | Nature Chemical Biology, Vol.16, pp. 946-954, 2020 |
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Mattes Mollenhauer, Ingmar Schuster, Stefan Klus, Christof Schütte | Singular Value Decomposition of Operators on Reproducing Kernel Hilbert Spaces | Advances om Dynamics, Optimization and Computation. Series: Studies in Systems, Decision and Control. A volume dedicated to Michael Dellnitz on his 60th birthday, Vol.304, pp. 109-131, Oliver Junge, O. Schütze, Gary Froyland, S. Ober-Blobaum, K. Padberg-Gehle (Eds.), Springer International, 2020, ISBN: 978-3-030-51264-4 |
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Anna Musial, Kinga Zolnacz, Nicole Srocka, Oleh Kravets, Jan Große, Philipp-Immanuel Schneider, Jacek Olszewski, Krzystof Poturaj, Grzegorz Wojcik, Pawel Mergo, Kamil Dybka, Mariusz Dyrkacz, Michal Dlubek, Sven Rodt, Sven Burger, Lin Zschiedrich, Waclaw Urbanczyk, Grzegorz Sek, Stephan Reitzenstein | Stand-alone quantum dot-based single-photon source operating at telecommunication wavelengths | 10th International Conference on Spontaneous Coherence in Excitonic Systems ICSCE10, p. 39, 2020 |
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Stefanie Winkelmann, Christof Schütte | Stochastic Dynamics in Computational Biology | Springer International Publishing, 2020, ISBN: 978-3-030-62386-9 |
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José Villatoro, Martin Zühlke, Daniel Riebe, Toralf Beitz, Marcus Weber, Hans-Gerd Löhmannsröben | Sub-ambient pressure IR-MALDI ion mobility spectrometer for the determination of low and high field mobilities | Analytical and Bioanalytical Chemistry, Vol.412, pp. 5247-5260, 2020 |
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Fabian Becker, Natasa Djurdjevac Conrad, Raphael A. Eser, Luzie Helfmann, Brigitta Schütt, Christof Schütte, Johannes Zonker | The Furnace and the Goat—A spatio-temporal model of the fuelwood requirement for iron metallurgy on Elba Island, 4th century BCE to 2nd century CE | PLOS ONE, Vol.15, pp. 1-37, 2020 |
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Daniel J. Laydon, Vikram Sunkara, Lies Boelen, Charles R. M. Bangham, Becca Asquith | The relative contributions of infectious and mitotic spread to HTLV-1 persistence | PLOS Computational Biology, 2020 |
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2019 |
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Jan-Hendrik Niemann | A Dynamic Memory Approach for Consensus Problems with Packet Loss | Master's thesis, Technische Universität Hamburg-Harburg, Furugh Mirali (Advisor), 2019 |
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Mohamed Omari, Alexander Lange, Julia Plöntzke, Susanna Röblitz | A Mathematical Model for the Influence of Glucose-Insulin Dynamics on the Estrous Cycle in Dairy Cows | ZIB-Report 19-22 |
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Mohamed Omari | A Mathematical Model of Bovine Metabolism and Reproduction: Application to Feeding Strategies, Drug Administration and Experimental Design | Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 |
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Chris Oates, T. J. Sullivan | A modern retrospective on probabilistic numerics | Statistics and Computing, 29(6), pp. 1335-1351, 2019 |
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arXiv DOI |
Mohamed Omari, Julia Plöntzke, Susanna Röblitz | A pharmacokinetic-pharmacodynamic model for single dose administration of Dexamethasone in dairy cows | ZIB-Report 19-53 |
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Florian Graf, Joshua Feis, Xavier Garcia Santiago, Martin Wegener, Carsten Rockstuhl, Ivan Fernandez-Corbaton | Achiral, Helicity Preserving, and Resonant Structures for Enhanced Sensing of Chiral Molecules | ACS Photonics, Vol.6, p. 482, 2019 |
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Lisa Gaedke-Merzhäuser | Adaptive Multigrid Solvers for Space-Time Discretisations | Master's thesis, Freie Universität Berlin, Christof Schütte, Rolf Krause, Martin Weiser (Advisors), 2019 |
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Vikram Sunkara | Algebraic Expressions of Conditional Expectations in Gene Regulatory Networks | Journal of Mathematical Biology, pp. 1779-1829, 2019 |
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Sebastian Götschel, Michael L. Minion | An Efficient Parallel-in-Time Method for Optimization with Parabolic PDEs | SIAM J. Sci. Comput., 41(6), pp. C603-C626, 2019 (preprint available as ZIB-Report 19-04) |
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Felix Binkowski, Lin Zschiedrich, Sven Burger | An auxiliary field approach for computing optical resonances in dispersive media | J. Eur. Opt. Soc.-Rapid, Vol.15, p. 3, 2019 |
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Pooja Gupta, Sarah Peter, Markus Jung, Astrid Lewin, Georg Hemmrich-Stanisak, Andre Franke, Max von Kleist, Christof Schütte, Ralf Einspanier, Soroush Sharbati, Jennifer zur Bruegge | Analysis of long non-coding RNA and mRNA expression in bovine macrophages brings up novel 2 aspects of Mycobacterium avium subspecies paratuberculosis infections | Scientific Reports in Nature, Vol.9, 2019 |
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Lara Hoffmann | Automating PCCA+ applied to Eye-Tracking Data | Master's thesis, Technische Universität Berlin, Marcus Weber (Advisor), 2019 |
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Jon Cockayne, Chris Oates, T. J. Sullivan, Mark Girolami | Bayesian Probabilistic Numerical Methods | SIAM Review, 61(4), pp. 756-789, 2019 |
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arXiv DOI |
Philipp-Immanuel Schneider, Xavier Garcia Santiago, Victor Soltwisch, Martin Hammerschmidt, Sven Burger, Carsten Rockstuhl | Benchmarking five global optimization approaches for nano-optical shape optimization and parameter reconstruction | ACS Photonics, Vol.6, p. 2726, 2019 |
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DOI arXiv |
Robert Julian Rabben | Bestimmung invarianter Unterräume des Koopman-Operators einer Overdamped Langevin-Dynamik mithilfe eines Muli-Layer Neural Networks | Bachelor's thesis, Technische Universität Berlin, Marcus Weber (Advisor), 2019 |
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Seyma Boz | Classification of the toxicity profile of the withdrawn drugs using computational prediction platform ProTox-II | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 |
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Annemarie Lang, Lisa Fischer, Marie-Christin Weber, Timo Gaber, Rainald Ehrig, Susanna Röblitz, Frank Buttgereit | Combining in vitro simulation and in silico modelling towards a sophisticated human osteoarthritis model | Osteoarthritis and Cartilage, Vol.27, p. S183, 2019 |
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Sebastian Götschel, Martin Weiser | Compression Challenges in Large Scale Partial Differential Equation Solvers | Algorithms, 12(9), p. 197, 2019 (preprint available as ZIB-Report 19-32) |
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Natalia Ernst, Konstantin Fackeldey, Andrea Volkamer, Oliver Opatz, Marcus Weber | Computation of temperature-dependent dissociation rates of metastable protein–ligand complexes | Molecular Simulation, 45(11), pp. 904-911, 2019 |
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Ole Wachsmann | Computational Models for the prediction of drug-induced Nephrotoxicity | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 |
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Felix Binkowski, Lin Zschiedrich, Sven Burger | Computing Optical Resonances in Plasmonic Systems Using a Contour Integral Method | Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 1068, 2019 |
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Sven Burger, Felix Binkowski, Lin Zschiedrich | Computing resonances in nano-photonic devices using Riesz-projection-based methods | The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 92, 2019 |
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T. J. Sullivan | Contributed discussion on the article "A Bayesian conjugate gradient method" | Bayesian Analysis, 14(3), pp. 985-989, 2019 |
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arXiv DOI |
Jon Wilson, Philipp Gutsche, Sven Herrmann, Sven Burger, Kevin McPeak | Correlation of circular differential optical absorption with geometric chirality in plasmonic meta-atoms | Opt. Express, Vol.27, p. 5097, 2019 |
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Xavier Garcia Santiago, Martin Hammerschmidt, Sven Burger, Carsten Rockstuhl, Ivan Fernandez-Corbaton, Lin Zschiedrich | Decomposition of scattered electromagnetic fields into vector spherical wave functions on surfaces with general shapes | Phys. Rev. B, Vol.99, p. 045406, 2019 |
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DOI arXiv |
Peter Schnauber, Johannes Schall, Samir Bounouar, Theresa Höhne, Suk-In Park, Geun-Hwan Ryu, Tobias Heindel, Sven Burger, Jin-Dong Song, Sven Rodt, Stephan Reitzenstein | Deterministic integration of quantum dots into on-chip multi-mode interference couplers via in-situ electron beam lithography | Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference (CLEO/EQEC), p. EB2.2, OSA Technical Digest, 2019 |
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Gauri Mangalgiri | Development of Titanium Dioxide Metasurfaces and Nanosoupbowls for Optically Enhancing Silicon Photocathodes | Doctoral thesis, Humboldt-Universität zu Berlin, Martina Schmid (Advisor), 2019 |
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Paweł Mrowinski, Peter Schnauber, Philipp Gutsche, Arsenty Kaganskiy, Johannes Schall, Sven Burger, Sven Rodt, Stephan Reitzenstein | Directional emission of a deterministically fabricated quantum dot – Bragg reflection multi-mode waveguide system | ACS Photonics, Vol.6, p. 2231, 2019 |
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DOI arXiv |
Tobias Haase, Vikram Sunkara, Benjamin Kohl, Carola Meier, Patricia Bußmann, Jessica Becker, Michal Jagielski, Max von Kleist, Wolfgang Ertel | Discerning the spatio-temporal disease patterns of surgically induced OA mouse models | PLOS One, 14(4), 2019 |
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Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker | Dispersion-engineered nanocomposites enable achromatic diffractive optical elements | Optica, Vol.6, p. 1031, 2019 |
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Borong Shao, Maria Bjaanaes, Aslaug Helland, Christof Schütte, Tim Conrad | EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma | PLOS ONE, 14(1), 2019 |
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Mark A. Girolami, Ilse C. F. Ipsen, Chris Oates, Art B. Owen, T. J. Sullivan | Editorial: Special edition on probabilistic numerics | Statistics and Computing, 29(6), pp. 1181-1183, 2019 |
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Nando Farchmin, Martin Hammerschmidt, Philipp-Immanuel Schneider, Matthias Wurm, Markus Bär, Sebastian Heidenreich | Efficient global sensitivity analysis for silicon line gratings using polynomial chaos | Proc. SPIE, Vol.11057, p. 110570J, 2019 |
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Sven Burger, Felix Binkowski, Lin Zschiedrich | Finite Element Simulations of Optical Resonances in Dispersive Nanoresonators | Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 699, 2019 |
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Enric Ribera Borrell | From ergodic infinite-time to finite-time transition path theory | Master's thesis, Freie Universität Berlin, Péter Koltai, Christof Schütte (Advisors), 2019 |
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Konstantin Fackeldey, Peter Koltai, Peter Nevir, Henning Rust, Axel Schild, Marcus Weber | From metastable to coherent sets - Time-discretization schemes | Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol.29, pp. 012101-012101, 2019 (preprint available as ZIB-Report 17-74) |
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Péter Koltai, Han Cheng Lie, Martin Plonka | Fréchet differentiable drift dependence of Perron–Frobenius and Koopman operators for non-deterministic dynamics | Nonlinearity, 32(11), pp. 4232-4257, 2019 |
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Bernhard Reuter, Konstantin Fackeldey, Marcus Weber | Generalized Markov modeling of nonreversible molecular kinetics | The Journal of Chemical Physics, 17(150), p. 174103, 2019 |
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Anna Andrle, Philipp Hönicke, Philipp-Immanuel Schneider, Yves Kayser, Martin Hammerschmidt, Sven Burger, Frank Scholze, Burkhard Beckhoff, Victor Soltwisch | Grazing incidence x-ray fluorescence based characterization of nanostructures for element sensitive profile reconstruction | Proc. SPIE, Vol.11057, p. 110570M, 2019 |
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DOI arXiv |
Margarita Kostré | Hybrid Models and Simulations of Reaction-Diffusion Processes | Master's thesis, Freie Universität Berlin, Frank Noe (Advisor), 2019 |
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Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria Peschutter, Heike Siebert, Annalisa Marsico | Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis | BMC Bioinformatics, 20(1471-2105), 2019 |
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Klaus Jäger, Marko Jošt, Johannes Sutter, Philipp Tockhorn, Eike Köhnen, David Eisenhauer, Phillip Manley, Steve Albrecht, Christiane Becker | Improving Monolithic Perovskite/Silicon Tandem Solar Cells From an Optical Viewpoint | OSA Advanced Photonics Congress, p. PM4C.2, OSA Technical Digest, 2019 |
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Marie-Christin Weber, Lisa Fischer, Alexandra Damerau, Igor Ponomarev, Moritz Pfeiffenberger, Timo Gaber, Sebastian Götschel, Jens Lang, Susanna Röblitz, Frank Buttgereit, Rainald Ehrig, Annemarie Lang | In vitro and in silico modeling of cellular and matrix-related changes during the early phase of osteoarthritis | BioRxiv, 2019 |
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Felix Meitzner | Influence of Ordinary Differential Equations on Neural Networks | Bachelor's thesis, Freie Universität Berlin, Christof Schütte, Tim Conrad (Advisors), 2019 |
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Carsten Hartmann, Christof Schütte, Wei Zhang | Jarzynski's equality, fluctuation theorems, and variance reduction: Mathematical analysis and numerical algorithms | Journal of Statistical Physics, 175(6), pp. 1214-1261, 2019 |
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arXiv DOI |
Stefan Klus, Brooke E. Husic, Mattes Mollenhauer, Frank Noe | Kernel methods for detecting coherent structures in dynamical data | Chaos: An Interdisciplinary Journal of Nonlinear Science, 29(12), 2019 |
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Wei Zhang, Stefan Klus, Tim Conrad, Christof Schütte | Learning chemical reaction networks from trajectory data | SIAM Journal on Applied Dynamical Systems (SIADS), 18(4), pp. 2000-2046, 2019 |
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arXiv DOI |
Lin Zschiedrich, Felix Binkowski, Sven Burger | Light-matter Interaction in Optical Resonators: Spectral Expansion by Riesz Projection | Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 1067, 2019 |
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Günter Kewes, Felix Binkowski, Sven Burger, Lin Zschiedrich, Felix Stete, Wouter Koopman, Matias Bargheer, Oliver Benson | Line Broadening Mechanisms in Hybrid Plasmonic Systems for Strong Coupling | Photonics & Electromagnetics Research Symposium Abstracts (PIERS Rome), Rita Asquini (Ed.), p. 704, 2019 |
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Kinga Żołnacz, Anna Musiał, Nicole Srocka, Jan Große, Maximilian Schlösinger, Philipp-Immanuel Schneider, Oleh Kravets, Monika Mikulicz, Jacek Olszewski, Krzysztof Poturaj, Grzegorz Wójcik, Paweł Mergo, Kamil Dybka, Mariusz Dyrkacz, Michał Dłubek, Sven Rodt, Sven Burger, Lin Zschiedrich, Grzegorz Sęk, Stephan Reitzenstein, Wacław Urbańczyk | Method for direct coupling of a semiconductor quantum dot to an optical fiber for single-photon source applications | Opt. Express, Vol.27, p. 26772, 2019 |
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Felix Binkowski, Lin Zschiedrich, Martin Hammerschmidt, Sven Burger | Modal analysis for nanoplasmonics with nonlocal material properties | Phys. Rev. B, Vol.100, p. 155406, 2019 |
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DOI arXiv |
Robert Schulz, Kenji Yamamoto, André Klossek, Fiorenza Rancan, Annika Vogt, Christof Schütte, Eckart Rühl, Roland R. Netz | Modeling of Drug Diffusion Based on Concentration Profiles in Healthy and Damaged Human Skin | Biophysical Journal, 117(5), pp. 998-1008, 2019 |
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Franziska Erlekam, Sinaida Igde, Susanna Röblitz, Laura Hartmann, Marcus Weber | Modeling of Multivalent Ligand-Receptor Binding Measured by kinITC | Computation, 7(3), p. 46, 2019 |
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Patrick Gelß, Stefan Klus, Jens Eisert, Christof Schütte | Multidimensional Approximation of Nonlinear Dynamical Systems | Journal of Computational and Nonlinear Dynamics, 14(6), 2019 |
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Narendra Lagumaddepalli Venkatareddy, Patrick Wilke, Natalia Ernst, Justus Horch, Marcus Weber, Andre Dallmann, Hans G. Börner | Mussel-glue inspired adhesives: A study on the relevance of L-Dopa and the function of the sequence at nanomaterial-peptide interfaces | Advanced Materials Interfaces, 6(13), p. 1900501, 2019 |
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Daniel Werdehausen, Sven Burger, Isabelle Staude, Thomas Pertsch, Manuel Decker | Nanocomposites – A Route to better and smaller optical Elements? | Optical Design and Fabrication 2019, p. OT2A.2, OSA Technical Digest, 2019 |
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Christiane Becker, Sven Burger, Klaus Jäger | Nanooptische Simulationen für optoelektronische Anwendungen | Photonik: Fachzeitschrift für die optischen Technologien, 2019(2), pp. 42-45, 2019 |
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Phillip Manley, Martin Hammerschmidt, Sven Burger, Christiane Becker | Nanophotonic Enhancement of Light Out-Coupling for Deep-UV LEDs | The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 745, 2019 |
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Christiane Becker, Phillip Manley, Klaus Jäger, David Eisenhauer, Johannes Sutter, Steve Albrecht, Kaibo Zheng, Tonu Pullerits, Sven Burger | Nanophotonic enhanced perovskite-silicon solar cell devices | The 10th International Conference on Metamaterials, Photonic Crystals and Plasmonics (META 2019), Said Zhoudi, Antonio Topa (Eds.), p. 858, 2019 |
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Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger | Numerical Investigation of Integrated Single-Photon Emitters in Low-Index-Contrast Waveguides | Nanophotonics: Foundations & Applications, CSF Conference Book of Abstracts, Lukas Novotny, Romain Quidant (Eds.), p. B11, 2019 |
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Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger | Numerical Investigation of Light Emission from Quantum Dots Embedded into On-Chip, Low Index Contrast Optical Waveguides | Phys. Status Solidi B, Vol.256, p. 1800437, 2019 |
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DOI arXiv |
Theresa Höhne, Peter Schnauber, Sven Rodt, Stephan Reitzenstein, Sven Burger | Numerical Studies of Integrated Single-Photon Emitters in Low-Index-Contrast Waveguides | 7th International Workshop on Engineering of Quantum Emitter Properties (EQEP), Stephan Reitzenstein, Tobias Heindel (Eds.), p. 49, 2019 |
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Sven Burger, Philipp-Immanuel Schneider, Theresa Höhne, Lin Zschiedrich | Numerical methods for simulation and optimization of the extraction efficiency from quantum-dot based single-photon emitters | 7th International Workshop on Engineering of Quantum Emitter Properties (EQEP), Stephan Reitzenstein, Tobias Heindel (Eds.), p. 20, 2019 |
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Felix Binkowski, Philipp-Immanuel Schneider, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Numerical optimization of resonant nanophotonic devices | The Seventh International School and Conference on Photonics (PHOTONICA Belgrade), Milica Matijević, Marko Krstić, Petra Beličev (Eds.), p. 10, 2019, ISBN: 978-86-7306-153-5 |
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Martin Hammerschmidt, Lin Zschiedrich, Philipp-Immanuel Schneider, Felix Binkowski, Sven Burger | Numerical optimization of resonant photonic devices | Proc. SPIE, p. 1105702, Vol.11057, 2019 |
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Wilhelm Bender | On a Novel Approach for Global Optimization of Non-Convex Problems | Master's thesis, Technische Universität Berlin, Konstantin Fackeldey (Advisor), 2019 |
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Rainald Ehrig, Markus O. Heller | On intrinsic equivalences of the finite helical axis, the instantaneous helical axis, and the SARA approach. A mathematical perspective. | Journal of Biomechanics, Vol.84, pp. 4-10, 2019 |
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Vikram Sunkara | On the Properties of the Reaction Counts Chemical Master Equation | Entropy, 21(6), p. 607, 2019 |
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Marco Reidelbach | Optimal Network Generation for the Simulation of Proton Transfer Processes | Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 |
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Max Zumbansen | Parameter estimation of multivalent processes on ITC datasets | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 |
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Rascha Basaleh | Prediction and Analysis of Drugs Inducing Liver Injury (DILI) using ProTox-II Computational-Tool | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2019 |
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P. Lalanne, W. Yan, A. Gras, C. Sauvan, J.-P. Hugonin, M. Besbes, G. Demésy, M. D. Truong, B. Gralak, F. Zolla, A. Nicolet, Felix Binkowski, Lin Zschiedrich, Sven Burger, J. Zimmerling, R. Remis, H. Paul Urbach, H. T. Liu, T. Weiss | Quasinormal mode solvers for resonators with dispersive materials | J. Opt. Soc. Am. A, Vol.36, p. 686, 2019 |
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DOI arXiv |
Luca Donati | Reweighting methods for Molecular Dynamics | Doctoral thesis, Freie Universität Berlin, Bettina G Keller, Marcus Weber (Advisors), 2019 |
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DOI URN |
Anika Rettig, Tobias Haase, Alexandr Pletnyov, Benjamin Kohl, Wolfgang Ertel, Max von Kleist, Vikram Sunkara | SLCV – A Supervised Learning - Computer Vision combined strategy for automated muscle fibre detection in cross sectional images | PeerJ, 2019 |
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Mehmet Neset Ozel, Abhishek Kulkarni, Amr Hasan, Josephine Brummer, Marian Moldenhauer, Ilsa-Maria Daumann, Heike Wolfenberg, Vincent J. Dercksen, Ferdi Ridvan Kiral, Martin Weiser, Steffen Prohaska, Max von Kleist, Peter Robin Hiesinger | Serial synapse formation through filopodial competition for synaptic seeding factors | Developmental Cell, 50(4), pp. 447-461, 2019 (preprint available as ZIB-Report 19-45) |
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Felix Binkowski, Lin Zschiedrich, Philipp-Immanuel Schneider, Martin Hammerschmidt, Xavier Garcia Santiago, Fridtjof Betz, Sven Burger | Spectral Expansion of the Scattering Response of Resonant Nanostructures | EOS Topical Meeting on Diffractive Optics, Kimmo Saastamoinen (Ed.), p. 1, 2019, ISBN: 978-952-68553-8-7 |
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Lin Zschiedrich, Felix Binkowski, Sven Burger | Spectral resonance expansion by Riesz projections | 14 th International Conference on Mathematical and Numerical Aspects of Wave Propagation Book of Abstracts, Manfred Kaltenbacher (Ed.), p. 234, 2019 |
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Han Cheng Lie, T. J. Sullivan, Andrew Stuart | Strong convergence rates of probabilistic integrators for ordinary differential equations | Statistics and Computing, 29(6), pp. 1265-1283, 2019 |
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arXiv DOI |
José Villatoro, Marcus Weber, Martin Zühlke, Andreas Lehmann, Karl Zechiowski, Daniel Riebe, Toralf Beitz, Hans-Gerd Löhmannsröben, Oliver Kreuzer | Structural characterization of synthetic peptides using electronspray ion mobility spectrometry and molecular dynamics simulations | International Journal of Mass Spectrometry, Vol.436, pp. 108-117, 2019 |
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Marcus Weber | Transformationsprodukte im Klärwerk: Mathematische Ansätze der Bewertung | KA Korrespondenz Abwasser, Abfall, Vol.7, pp. 551-557, 2019 |
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Uncertainty Quantification, 11-15 March 2019 | Oberwolfach Reports, 16(1), pp. 695-772, Oliver Ernst, Fabio Nobile, Claudia Schillings, T. J. Sullivan (Eds.), 2019 |
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Philipp-Immanuel Schneider, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Using Gaussian process regression for efficient parameter reconstruction | Proc. SPIE, Vol.10959, p. 1095911, 2019 |
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DOI arXiv |
Aennes Abbas, Ilona Schneider, Anna Bollmann, Jan Funke, Jörg Oehlmann, Carsten Prasse, Ulrike Schulte-Oehlmann, Wolfram Seitz, Thomas Ternes, Marcus Weber, Henning Wesely, Martin Wagner | What you extract is what you see: Optimising the preparation of water and wastewater samples for in vitro bioassays | Water Research, Vol.152, pp. 47-60, 2019 |
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Giovanna Del Vecchio, Dominika Labuz, Julia Temp, Viola Seitz, Michael Kloner, Roger Negrete, Antonio Rodriguez-Gaztelumendi, Marcus Weber, Halina Machelska, Christoph Stein | pKa of opioid ligands as a discriminating factor for side effects | Scientific Reports, Vol.9, p. 19344, 2019 |
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José Villatoro | A combined approach for the analysis of biomolecules using IR-MALDI ion mobility spectrometry and molecular dynamics simulations of peptide ions in the gas phase | Doctoral thesis, Universität Potsdam, Hans-Gerd Löhmannsröben (Advisor), 2018 |
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Stefan Klus, Andreas Bittracher, Ingmar Schuster, Christof Schütte | A kernel-based approach to molecular conformation analysis | Journal of Chemical Physics, 149(24), 2018 |
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Julia Plöntzke, Mascha Berg, Susanna Röblitz | A mathematical modelling approach to the insight of dynamic networks: Potassium homeostasis and glucose-insulin in dairy cows | ADSA 2018 Annual Meeting, Vol.101 Suppl. 2, pp. 226-227, American Dairy Science Association, Journal of Dairy Science, 2018 |
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Péter Koltai, Christof Schütte | A multiscale perturbation expansion approach for Markov state modeling of non-stationary molecular dynamics | SIAM J. Multiscale Model. Simul., 16(4), pp. 1455-1485, 2018 (preprint available as ZIB-Report 17-49) |
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Phillip Manley, Fatwa F. Abdi, Sean P. Berglund, A. T. M. Nazmul Islam, Sven Burger, Roel van de Krol, Martina Schmid | Absorption Enhancement for Ultra-Thin Solar Fuel Devices with Plasmonic Gratings | ACS Appl. Energy Mater., Vol.1, p. 5810, 2018 |
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DOI arXiv |
Katharina Schrade, Jessica Tröger, Adeep Eldashan, Kerstin Zühlke, Kamal R. Abdul Azees, Jonathan M. Elkins, Martin Neuenschwander, Andreas Oder, Mohamed Elkewedi, Sarah Jaksch, Karsten Andrae, Jinliang Li, Jaoa Fernandes, Paul Markus Müller, Stephan Grunwald, Stephen F. Marino, Tanja Vukicevic, Jenny Eichhorst, Burkhard Wiesner, Marcus Weber, Michael Kapiloff, Oliver Rocks, Oliver Daumke, Thomas Wieland, Stefan Knapp, Jens Peter von Kries, Enno Klussmann | An AKAP-Lbc-RhoA interaction inhibitor promotes the translocation of aquaporin-2 to the plasma membrane of renal collecting duct principal cells | PLOS ONE, 13(1), pp. e0191423-e0191423, 2018 |
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Jannes Quer, Luca Donati, Bettina Keller, Marcus Weber | An automatic adaptive importance sampling algorithm for molecular dynamics in reaction coordinates | SIAM Journal on Scientific Computing, 40(2), pp. A653-A670, 2018 (preprint available as ZIB-Report 17-09) |
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Felix Binkowski, Lin Zschiedrich, Sven Burger | Analysis of light-matter interaction of optical sources with dispersive nanoresonators via contour integration | XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 40, 2018, ISBN: 978-3-921823-98-9 |
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Carlo Barth | Analysis of photonic crystals for interaction with near-surface emitters | Doctoral thesis, Technische Universität Berlin, Bernd Rech, Christiane Becker (Advisors), 2018 |
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Klaus Jäger, Phillip Manley, Duote Chen, Philipp Tockhorn, David Eisenhauer, Grit Köppel, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker | Antireflective nanotextures for monolithic perovskite-silicon tandem solar cells | Proc. SPIE, Vol.10688, p. 106880A, 2018 |
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DOI arXiv |
Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivanskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mork, Niels Gregersen | Benchmarking five numerical simulation techniques for computing resonance wavelengths and quality factors in photonic crystal membrane line defect cavities | Opt. Express, Vol.26, p. 11366, 2018 |
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DOI arXiv |
Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko | Benchmarking state-of-the-art numerical simulation techniques for analyzing large photonic crystal membrane line defect cavities | Proc. SPIE, Vol.10672, p. 106721C, 2018 |
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Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Oleksiy S. Kim, Olav Breinbjerg, Fengwen Wang, Ole Sigmund, Aliaksandra Ivinskaya, Andrei Lavrinenko, Philipp Gutsche, Sven Burger, Teppo Häyrynen, Jesper Mørk | Benchmarking state-of-the-art optical simulation methods for analyzing large nanophotonic structures | XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 9, 2018, ISBN: 978-3-921823-98-9 |
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Philipp Gutsche, Philipp-Immanuel Schneider, Sven Burger, Manuel Nieto-Vesperinas | Chiral scatterers designed by Bayesian optimization | J. Phys.: Conf. Ser., Vol.963, p. 012004, 2018 |
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DOI arXiv |
Toni Mancini, Federico Mari, Annalisa Massini, Igor Melatti, Ivano Salvo, Stefano Sinisi, Enrico Tronci, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners | Computing Personalised Treatments through In Silico Clinical Trials. A Case Study on Downregulation in Assisted Reproduction | Experimental Evaluation of Algorithms for Solving Problems with Combinatorial Explosion, Workshop of the Federated Logic Conference 2018 (FLoC 2018), Oxford, pp. 1-16, 2018 |
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Robert Schwieger, Heike Siebert, Susanna Röblitz | Correspondence of Trap Spaces in Different Models of Bioregulatory Networks | SIAM Journal on Applied Dynamical Systems, 17(2), pp. 1742-1765, 2018 (preprint available as ZIB-Report 18-10) |
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Stefan Klus, Feliks Nüske, Peter Koltai, Hao Wu, Ioannis Kevrekidis, Christof Schütte, Frank Noé | Data-driven model reduction and transfer operator approximation | Journal of Nonlinear Science, 28(3), pp. 985-1010, 2018 |
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Daniel Werdehausen, Isabelle Staude, Sven Burger, Jörg Petschulat, Toralf Scharf, Thomas Pertsch, Manuel Decker | Design rules for customizable optical materials based on nanocomposites | Opt. Mater. Express, Vol.8, p. 3456, 2018 |
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DOI arXiv |
Peter Schnauber, Johannes Schall, Samir Bounouar, Theresa Höhne, Suk-In Park, Geun-Hwan Ryu, Tobias Heindel, Sven Burger, Jin-Dong Song, Sven Rodt, Stephan Reitzenstein | Deterministic integration of quantum dots into on-chip multi-mode interference beamsplitters using in-situ electron beam lithography | Nano Lett., Vol.18, p. 2336, 2018 |
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Arne Nägel, Peter Deuflhard, Gabriel Wittum | Efficient Stiff Integration of Density Driven Flow Problems | ZIB-Report 18-54 |
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Phillip Manley, Min Song, Sven Burger, Martina Schmid | Efficient determination of bespoke optically active nanoparticle distributions | J. Opt., Vol.20, p. 085003, 2018 |
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DOI arXiv |
Martin Hammerschmidt, Jakub Pabisiak, Ana Cristina Perez-Gea, Nicolas Julian, Sean Hon, Sven Burger | Efficient finite-element-based numerical modelling of large sub-wavelength patterned optical structures | Proc. SPIE, Vol.10542, p. 105421G, 2018 |
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Nicole Srocka, Anna Musiał, Philipp-Immanuel Schneider, Paweł Mrowiński, Paweł Holewa, Sven Burger, David Quandt, André Strittmatter, Sven Rodt, Stephan Reitzenstein, Grzegorz Sęk | Enhanced photon-extraction efficiency from InGaAs/GaAs quantum dots in deterministic photonic structures at 1.3 μm fabricated by in-situ electron-beam lithography | AIP Adv., Vol.8, p. 085205, 2018 |
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DOI arXiv |
Han Cheng Lie, T. J. Sullivan | Equivalence of weak and strong modes of measures on topological vector spaces | Inverse Problems, 34(11), p. 115013, 2018 |
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arXiv DOI |
Han Cheng Lie, T. J. Sullivan | Erratum: Equivalence of weak and strong modes of measures on topological vector spaces (2018 Inverse Problems 34 115013) | Inverse Problems, 34(12), p. 129601, 2018 |
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Luca Donati, Martin Heida, Bettina G. Keller, Marcus Weber | Estimation of the infinitesimal generator by square-root approximation | J. Phys.: Condens. Matter, 30(42), pp. 425201-425201, 2018 |
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Merlind Schotte | Finite-Elemente-Techniken zur mechanischen Stabilitätsanalyse der Hyomandibula von Rochen | Master's thesis, Beuth Hochschule für Technik Berlin, Daniel Baum, Ute Wagner (Advisors), 2018 |
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Alexander Lange, Robert Schwieger, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz | Follicular competition in cows: the selection of dominant follicles as a synergistic effect | Journal of Mathematical Biology, 2018 (preprint available as ZIB-Report 17-21) |
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Bernhard Reuter | Generalisierte Markov-Modellierung von Nichtgleichgewichtssystemen - Simulation und Modellierung der Amyloid-beta(1-40)-Konformationsdynamik unter Mikrowelleneinfluss | Doctoral thesis, Universität Kassel, Martin Garcia (Advisor), 2018 |
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Bernhard Reuter, Marcus Weber, Konstantin Fackeldey, Susanna Röblitz, Martin E. Garcia | Generalized Markov State Modeling Method for Nonequilibrium Biomolecular Dynamics: Exemplified on Amyloid β Conformational Dynamics Driven by an Oscillating Electric Field | Journal of Chemical Theory and Computation, 14(7), pp. 3579-3594, 2018 |
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Günter Kewes, Felix Binkowski, Sven Burger, Lin Zschiedrich, Oliver Benson | Heuristic Modeling of Strong Coupling in Plasmonic Resonators | ACS Photonics, Vol.5, p. 4089, 2018 |
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DOI arXiv |
Natasa Djurdjevac Conrad, Luzie Helfmann, Johannes Zonker, Stefanie Winkelmann, Christof Schütte | Human mobility and innovation spreading in ancient times: a stochastic agent-based simulation approach | EPJ Data Science, 7(1), 2018 |
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Marcus Weber | Implications of PCCA+ in Molecular Simulation | Computation, 6(1), p. 20, 2018 |
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Onur Teymur, Han Cheng Lie, T. J. Sullivan, Ben Calderhead | Implicit probabilistic integrators for ODEs | Advances in Neural Information Processing Systems 31 (NIPS 2018), 2018 |
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Jannes Quer | Importance Sampling for metastable dynamical systems in molecular dynamics | Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2018 |
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Annemarie Lang, Andrea Volkamer, Laura Behm, Susanna Röblitz, Rainald Ehrig, Marlon Schneider, Lisbet Geris, Joerg Wichard, Frank Buttgereit | In silico Methods - Computational Alternatives to Animal Testing | ALTEX, 35(1), pp. 126-128, 2018 |
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Philipp-Immanuel Schneider, Xavier Garcia Santiago, Felix Binkowski, Philipp Gutsche, Theresa Höhne, Martin Hammerschmidt, Lin Zschiedrich, Sven Burger | Light Management for Engineering Luminescence in Nanoscale Environments By Numerical Optimization | The Electrochemical Society, Meeting Abstracts, p. 1164, Vol.16, 2018 |
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Klaus Jäger, Phillip Manley, David Eisenhauer, Philipp Tockhorn, Johannes Sutter, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker | Light management with sinusoidal nanotextures | Light, Energy and the Environment 2018, p. OT5C.5, OSA Technical Digest, 2018 |
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Lisa Fischer, Sebastian Götschel, Martin Weiser | Lossy data compression reduces communication time in hybrid time-parallel integrators | Comput. Vis. Sci., 19(1), pp. 19-30, 2018 (preprint available as ZIB-Report 17-25) |
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Manuel Dibak, Mauricio J. del Razo, David de Sancho, Christof Schütte, Frank Noé | MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations | Journal of Chemical Physics, 148(21), 2018 |
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Manuel Dibak, Mauricio J. del Razo, David De Sancho, Christof Schütte, Frank Noé | MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations | Journal of Chemical Physics, 148(214107), 2018 |
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Carlo Barth, Christiane Becker | Machine learning classification for field distributions of photonic modes | Commun. Phys., Vol.1, p. 58, 2018 |
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DOI arXiv |
Natasa Djurdjevac Conrad, Daniel Fuerstenau, Ana Grabundzija, Luzie Helfmann, Martin Park, Wolfram Schier, Brigitta Schütt, Christof Schütte, Marcus Weber, Niklas Wulkow, Johannes Zonker | Mathematical modeling of the spreading of innovations in the ancient world | eTopoi. Journal for Ancient Studies, Vol.7, 2018 |
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Jakob Witzig, Isabel Beckenbach, Leon Eifler, Konstantin Fackeldey, Ambros Gleixner, Andreas Grever, Marcus Weber | Mixed-Integer Programming for Cycle Detection in Non-reversible Markov Processes | Multiscale Modeling and Simulation, 16(1), pp. 248-265, 2018 (preprint available as ZIB-Report 16-39) |
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Natascia Castagna, Jacques Morel, Luc Testa, Sven Burger | Modelling of standard and specialty fibre-based systems using finite element methods | Proc. SPIE, Vol.10683, p. 1068336, 2018 |
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DOI arXiv |
Paula Breitbach | Molecular Binding Kinetics of CYP P450 by Using the Infinitesimal Generator Approach | Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2018 |
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Giovanni Ciccotti, Mauro Ferrario, Christof Schütte | Molecular Dynamics vs. Stochastic Processes: Are We Heading Anywhere? | Special Issue: Understanding Molecular Dynamics via Stochastic Processes, Entropy, 20(5), 2018 |
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Duote Chen, Phillip Manley, Philipp Tockhorn, David Eisenhauer, Grit Köppel, Martin Hammerschmidt, Sven Burger, Steve Albrecht, Christiane Becker, Klaus Jäger | Nanophotonic Light Management for Perovskite-Silicon Tandem Solar Cells | J. Photonics Energy, Vol.8, p. 022601, 2018 |
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DOI arXiv |
Christiane Becker, Sven Burger, Carlo Barth, Phillip Manley, Klaus Jäger, David Eisenhauer, Grit Köppel, Pavel Chabera, Junsheng Chen, Kaibo Zheng, Tönu Pullerits | Nanophotonic enhanced two-photon excited photoluminescence of perovskite quantum dots | ACS Photonics, Vol.5, p. 4668, 2018 |
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DOI arXiv |
Martina Klimm | New Strategies in Conformation Dynamics | Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2018 |
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Nicholas J. Tierney, Antonietta Mira, J. Jost Reinhold, Martin Weiser, Roman Burkart, Claudio Benvenuti, Angelo Auricchio | Novel relocation methods for automatic external defibrillator improve out-of-hospital cardiac arrest coverage under limited resources | Resuscitation, pp. 83-89, 2018 |
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Philipp-Immanuel Schneider, Nicole Srocka, Sven Rodt, Lin Zschiedrich, Stephan Reitzenstein, Sven Burger | Numerical optimization of the extraction efficiency of a quantum-dot based single-photon emitter into a single-mode fiber | Opt. Express, Vol.26, p. 8479, 2018 |
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DOI arXiv |
Johannes von Lindheim | On Intrinsic Dimension Estimation and Minimal Diffusion Maps Embeddings of Point Clouds | Master's thesis, Freie Universität Berlin, Ralf Banisch (Advisor), 2018 |
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Klaus Jäger, Grit Köppel, Martin Hammerschmidt, Sven Burger, Christiane Becker | On accurate simulations of thin-film solar cells with a thick glass superstrate | Opt. Express, Vol.26, p. A99, 2018 |
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Maksim Shpak, Sven Burger, Ville Byman, Kimmo Saastamoinen, Mertsi Haapalainen, Antti Lassila | Online measurement of optical fibre geometry during manufacturing | Proc. SPIE, Vol.10683, p. 1068318, 2018 |
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DOI arXiv |
Viola Spahn, Giovanna Del Vecchio, Antonio Rodriguez-Gaztelumendi, Julia Temp, Dominika Labuz, Michael Kloner, Marco Reidelbach, Halina Machelska, Marcus Weber, Christoph Stein | Opioid receptor signaling, analgesic and side effects induced by a computationally designed pH-dependent agonist | Scientific Reports, Vol.8, p. 8965, 2018 |
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Philipp Gutsche, Manuel Nieto-Vesperinas | Optical Chirality of Time-Harmonic Wavefields for Classification of Scatterers | Sci. Rep., Vol.8, p. 9416, 2018 |
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DOI arXiv |
Martin Weiser, Yvonne Freytag, Bodo Erdmann, Michael Hubig, Gita Mall | Optimal Design of Experiments for Estimating the Time of Death in Forensic Medicine | Inverse Problems, 34(12), p. 125005, 2018 (preprint available as ZIB-Report 18-08) |
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Peter Koltai, Hao Wu, Frank Noé, Christof Schütte | Optimal data-driven estimation of generalized Markov state models for non-equilibrium dynamics | Computation, 6(1), 2018 |
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Phillip Manley, Klaus Jäger, Philipp Tockhorn, Sven Burger, Steve Albrecht, Christiane Becker | Optimization of nanostructured high efficiency perovskite/c-Si tandem solar cells via numerical simulation | Proc. SPIE, p. 107310B, Vol.10731, 2018 |
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Philipp-Immanuel Schneider, Lin Zschiedrich, Xavier Garcia Santiago, Sven Burger | Optimization of quantum optical devices with machine learning | XXVI International Workshop on Optical Wave & Waveguide Theory and Numerical Modelling, Proceedings, p. 6, 2018, ISBN: 978-3-921823-98-9 |
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Sebastian Götschel, Michael L. Minion | Parallel-in-Time for Parabolic Optimal Control Problems Using PFASST | Domain Decomposition Methods in Science and Engineering XXIV, pp. 363-371, Springer: Cham, 2018 (preprint available as ZIB-Report 17-51) |
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Franz Löchner, Anna Fedotova, Sheng Liu, Gordon Keeler, Gregory Peake, Sina Saravi, Maxim Shcherbakov, Sven Burger, Andrey Fedyanin, Igal Brener, Thomas Pertsch, Frank Setzpfandt, Isabelle Staude | Polarization-Dependent Second Harmonic Diffraction from Resonant GaAs Metasurfaces | ACS Photonics, Vol.5, p. 1786, 2018 |
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Marco Reidelbach, Marcus Weber, Petra Imhof | Prediction of perturbed proton transfer networks | PLoS ONE, 13(12), pp. e0207718-e0207718, 2018 |
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Han Cheng Lie, T. J. Sullivan | Quasi-invariance of countable products of Cauchy measures under non-unitary dilations | Electronic Communications in Probability, 23(8), pp. 1-6, 2018 |
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Han Cheng Lie, T. J. Sullivan, Aretha Teckentrup | Random forward models and log-likelihoods in Bayesian inverse problems | ZIB-Report 18-03 |
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Lin Zschiedrich, Felix Binkowski, Niko Nikolay, Oliver Benson, Günter Kewes, Sven Burger | Riesz-projection-based theory of light-matter interaction in dispersive nanoresonators | Phys. Rev. A, Vol.98, p. 043806, 2018 |
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DOI arXiv |
Muluneh G. Abebe, Aimi Abass, Guillaume Gomard, Lin Zschiedrich, Uli Lemmer, Bryce S. Richards, Carsten Rockstuhl, Ulrich W. Paetzold | Rigorous wave-optical treatment of photon recycling in thermodynamics of photovoltaics: Perovskite thin-film solar cells | Phys. Rev. B, Vol.98, p. 075141, 2018 |
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DOI arXiv |
Sabine Wagner, Carlos Zapata, Wei Wan, Kornelia Gawlitza, Marcus Weber, Knut Rurack | Role of Counterions in Molecularly Imprinted Polymers for Anionic Species | Langmuir, 34(23), pp. 6963-6975, 2018 |
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Xavier Garcia Santiago, Philipp-Immanuel Schneider, Carsten Rockstuhl, Sven Burger | Shape design of a reflecting surface using Bayesian Optimization | J. Phys.: Conf. Ser., Vol.963, p. 012003, 2018 |
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Martin Hammerschmidt, Philipp-Immanuel Schneider, Xavier Garcia Santiago, Lin Zschiedrich, Martin Weiser, Sven Burger | Solving inverse problems appearing in design and metrology of diffractive optical elements by using Bayesian optimization | Proc. SPIE, Vol.10694, p. 1069407, 2018 |
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Konstantin Fackeldey, Alexander Sikorski, Marcus Weber | Spectral Clustering for Non-Reversible Markov Chains | Computational and Applied Mathematics, 37(5), pp. 6376-6391, 2018 (preprint available as ZIB-Report 18-48) |
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Max von Kleist, Christof Schütte, Wei Zhang | Statistical analysis of the first passage path ensemble of jump processes | Journal of Statistical Physics, Vol.170, pp. 809-843, 2018 |
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Luzie Helfmann | Stochastic Modeling of Interacting Agent Systems | Master's thesis, Freie Universität Berlin, Christof Schütte, Natasa Djurdjevac Conrad (Advisors), 2018 |
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Marcus Weber | Supplementary: Implications of PCCA+ in Molecular Simulation | 2018 |
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Stefan Klus, Patrick Gelß, Sebastian Peitz, Christof Schütte | Tensor-based dynamic mode decomposition | Nonlinearity, 31(7), 2018 |
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Peter Deuflhard | The Grand Four. Affine Invariant Globalizations of Newton's Method | Vietnam Journal of Mathematics, 46(4), pp. 761-777, 2018 |
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Martin Weiser, Sunayana Ghosh | Theoretically optimal inexact SDC methods | Communications in Applied Mathematics and Computational Science, pp. 53-86, 2018 (preprint available as ZIB-Report 16-52) |
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Philipp Lorenz-Spreen, Frederik Wolf, Jonas Braun, Gourab Ghoshal, Natasa Djurdjevac Conrad, Philipp Hövel | Tracking online topics over time: understanding dynamic hashtag communities | Computational Social Networks, 5(9), 2018 (accepted for publication on 2018-09-28) |
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Marcus Weber | Transformationsprodukte im Klärwerk: Mathematische Ansätze der Bewertung | KA Korrespondenz Abwasser, Abfall, 2018 (accepted for publication) |
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Andreas Bittracher, Péter Koltai, Stefan Klus, Ralf Banisch, Michael Dellnitz, Christof Schütte | Transition manifolds of complex metastable systems: Theory and data-driven computation of effective dynamics | Jounal of Nonlinear Science, 28(2), pp. 471-512, 2018 (preprint available as ZIB-Report 17-22) |
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Martin Weiser, Bodo Erdmann, Sebastian Schenkl, Holger Muggenthaler, Michael Hubig, Gita Mall, Stefan Zachow | Uncertainty in Temperature-Based Determination of Time of Death | Heat and Mass Transfer, 54(9), pp. 2815-2826, 2018 (preprint available as ZIB-Report 17-18) |
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Daniel Werdehausen, Isabelle Staude, Sven Burger, Jörg Petschulat, Toralf Scharf, Thomas Pertsch, Manuel Decker | Using effective medium theories to design tailored nanocomposite materials for optical systems | Proc. SPIE, p. 107450H, Vol.10745, 2018 |
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DOI arXiv |
Theresa Höhne, Lin Zschiedrich, Nasibeh Haghighi, James A. Lott, Sven Burger | Validation of quasi-normal modes and of constant-flux modes for computing fundamental resonances of VCSELs | Proc. SPIE, Vol.10682, p. 106821U, 2018 |
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Radu Malureanu, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mørk, Niels Gregersen | Which Computational Methods Are Good for Analyzing Large Photonic Crystal Membrane Cavities? | 20th International Conference on Transparent Optical Networks (ICTON), 2018 |
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2017 |
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Mascha Berg, Julia Plöntzke, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz | A dynamic model to simulate potassium balance in dairy cows | Journal of Dairy Science, 100(12), pp. 9799-9814, 2017 (preprint available as ZIB-Report 17-47) |
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Alexander Lange | A mathematical framework for predicting lifestyles of viral pathogens | Modelling Biological Evolution 2017: Developing Novel Approaches, 2017 |
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Viola Spahn, Giovanna Del Vecchio, Dominika Labuz, Antonio Rodriguez-Gaztelumendi, N. Massaly, Julia Temp, Vedat Durmaz, P. Sabri, Marco Reidelbach, Halina Machelska, Marcus Weber, Christoph Stein | A nontoxic pain killer designed by modeling of pathological receptor conformations | Science, 355(6328), pp. 966-969, 2017 |
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Klaus Jäger, Grit Köppel, Martin Hammerschmidt, Sven Burger, Christiane Becker | Accurate optical simulations of periodic nanostructures on a thick glass substrate | 29th Workshop on Quantum Solar Energy Conversion - (QUANTSOL), 2017 |
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Marian Moldenhauer, Martin Weiser, Stefan Zachow | Adaptive Algorithms for Optimal Hip Implant Positioning | PAMM, 17(1), pp. 203-204, 2017 |
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Alexander Sikorski | An Information-Theoretic Empirical Bayes Method and its Application to a Systems Biology Model | Master's thesis, Freie Universität Berlin, Susanna Röblitz (Advisor), 2017 |
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Lars Lubkoll, Anton Schiela, Martin Weiser | An affine covariant composite step method for optimization with PDEs as equality constraints | Optimization Methods and Software, 32(5), pp. 1132-1161, 2017 (preprint available as ZIB-Report 15-09) |
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Sebastian Schenkl, Holger Muggenthaler, Michael Hubig, Bodo Erdmann, Martin Weiser, Stefan Zachow, Andreas Heinrich, Felix Victor Güttler, Ulf Teichgräber, Gita Mall | Automatic CT-based finite element model generation for temperature-based death time estimation: feasibility study and sensitivity analysis | International Journal of Legal Medicine, 131(3), pp. 699-712, 2017 |
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Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Teppo Häyrynen, Andrei Lavrinenko, Jesper Moerk, Fengwen Wang, Ole Sigmund, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Philipp Gutsche, Sven Burger | Benchmarking five computational methods for analyzing large photonic crystal membrane cavities | Numerical Simulation of Optoelectronic Devices (NUSOD), p. 89, IEEE, 2017 |
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Philipp Lorenz, Frederik Wolf, Jonas Braun, Natasa Djurdjevac Conrad, Philipp Hövel | Capturing the Dynamics of Hashtag-Communities | International Workshop on Complex Networks and their Applications, pp. 401-413, 2017 |
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Philipp Gutsche, Manuel Nieto-Vesperinas, Raquel Mäusle, Sven Burger | Chiral Nanophotonics: Theory and Simulation | Doctoral Summer School on Nanophotonics and Metamaterials, ITMO University, 2017 |
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Andrey Novitsky, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Philipp Gutsche, Sven Burger, Oleksiy S. Kim, Olav Breinbjerg, Aliaksandra Ivinskaya, Fengwen Wang, Ole Sigmund, Teppo Häyrynen, Andrei Lavrinenko, Jesper Mørk, Niels Gregersen | Comparison of five computational methods for computing Q factors in photonic crystal membrane cavities | 19th International Conference on Transparent Optical Networks (ICTON), 2017 |
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Niels Gregersen, Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Oleksiy S. Kim, Olav Breinbjerg, Fengwen Wang, Ole Sigmund, Aliaksandra Ivinskaya, Andrei Lavrinenko, Philipp Gutsche, Sven Burger, Teppo Häyrynen, Jesper Merk | Comparison of five numerical methods for computing quality factors and resonance wavelengths in photonic crystal membrane cavities | CLEO/Europe-EQEC, 2017 |
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Susanne Röhl | Computing the minimal rebinding effect for nonreversible processes | Master's thesis, Freie Universität Berlin, Marcus Weber, Konstantin Fackeldey (Advisors), 2017 |
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Andreas Bittracher, Ralf Banisch, Christof Schütte | Data-driven Computation of Molecular Reaction Coordinates | ZIB-Report 17-77 |
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Jan Müller, Sebastian Götschel, Christiane Maierhofer, Martin Weiser | Determining the material parameters for the reconstruction of defects in carbon fiber reinforced polymers from data measured by flash thermography | AIP Conference Proceedings, Vol.1806, 2017 |
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Stefan Klus, Ingmar Schuster, Krikamol Muandet | Eigendecompositions of Transfer Operators in Reproducing Kernel Hilbert Spaces | Journal of Machine Learning Research, 2017 (under review) |
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arXiv |
Marcus Weber | Eigenvalues of non-reversible Markov chains – A case study | ZIB-Report 17-13 |
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Ingmar Schuster, Paul Constantine, T. J. Sullivan | Exact active subspace Metropolis–Hastings, with applications to the Lorenz-96 system | 2017 |
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arXiv |
Konstantin Fackeldey, Amir Niknejad, Marcus Weber | Finding Metastabilities in Reversible Markov Chains based on Incomplete Sampling: Case of Molecular Simulation | Special Matrices, pp. 73-81, 2017 |
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Philipp Gutsche, Sven Burger, Manuel Nieto-Vesperinas | Fundamentals and Applications of an Optical Theorem for Chiral Optical Fields | 4th International Conference on Optical Angular Momentum, 2017 |
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Konstantin Fackeldey, Marcus Weber | GenPCCA -- Markov State Models for Non-Equilibrium Steady States | Big data clustering: Data preprocessing, variable selection, and dimension reduction. WIAS Report No. 29, pp. 70-80, 2017 |
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Philipp-Immanuel Schneider, Xavier Garcia Santiago, Carsten Rockstuhl, Sven Burger | Global optimization of complex optical structures using Bayesian optimization based on Gaussian processes | Proc. SPIE, Vol.10335, p. 103350O, 2017 |
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DOI arXiv |
Gauri Mangalgiri, Makars Šiškins, Alina Arslanova, Martin Hammerschmidt, Phillip Manley, Wiebke Riedel, Martina Schmid | Highly Transmittive Broadband Dielectric Nanoholes | CLEO, p. JTu5A.117, OSA Tech. Dig., 2017 |
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Stefanie Winkelmann, Christof Schütte | Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems | The Journal of Chemical Physics, 147(11), pp. 114115-1-114115-18, 2017 (preprint available as ZIB-Report 17-29) |
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Carsten Hartmann, Christof Schütte, Marcus Weber, Wei Zhang | Importance sampling in path space for diffusion processes with slow-fast variables | Probability Theory and Related Fields, pp. 1-52, 2017 |
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Pooja Gupta, Annika Gramatke, Ralf Einspanier, Christof Schütte, Max von Kleist, Jutta Sharbati | In silico cytotoxicity assessment on cultured rat intestinal cells deduced from cellular impedance measurements | Toxicology in Vitro, Vol.41, pp. 179-188, 2017 (preprint available as ZIB-Report 17-08) |
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Carlo Barth, Sebastian Roder, Daniel Brodoceanu, Tobias Kraus, Martin Hammerschmidt, Sven Burger, Christiane Becker | Increased fluorescence of PbS quantum dots in photonic crystals by excitation enhancement | Appl. Phys. Lett., Vol.111, p. 031111, 2017 |
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DOI arXiv |
Ingmar Schuster, Heiko Strathmann, Brooks Paige, Dino Sejdinovic | Kernel Sequential Monte Carlo | Joint European Conference on Machine Learning and Knowledge Discovery in Databases, pp. 390-409, 2017 |
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Brigitte Leeners, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Lanja Saleh, K. Spanhaus, Cordula Schippert, Y. Zhang, M. P. Hengartner | Lack of association between female hormone levels and visuospatial working memory, divided attention and cognitive bias across two consecutive menstrual cycles | Front. Behav. Neurosci., 2017 |
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Sinaida Igde, Susanna Röblitz, Anne Müller, Katharina Kolbe, Sophia Boden, Claudia Fessele, Thisbe Lindhorst, Marcus Weber, Laura Hartmann | Linear Precision Glycomacromolecules with Varying Interligand Spacing and Linker Functionalities Binding to Concanavalin A and the Bacterial Lectin FimH | Marcomolecular Bioscience, 17(12), p. 1700198, 2017 |
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Stefanie Winkelmann | Markov Control with Rare State Observation: Average Optimality | Markov Processes and Related Fields, Vol.23, pp. 1-34, 2017 (preprint available as ZIB-Report 16-59) |
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Xavier Garcia Santiago, Sven Burger, Carsten Rockstuhl, Ivan Fernandez-Corbaton | Measuring the electromagnetic chirality of 2D arrays under normal illumination | Opt. Lett., Vol.42, p. 4075, 2017 |
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DOI arXiv |
Niklas Wulkow | Modelling the Spread of Innovations by a Markov Process in a Bayesian Framework | Master's thesis, Freie Universität Berlin, Christof Schütte, Marcus Weber (Advisors), 2017 |
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Lisa Brust | Moleküldynamik-Simulation via eines Faltungsansatzes im Potential | Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017 |
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Michael Hengartner, Tillmann H. C. Krüger, Kirsten Geraedts, Enrico Tronci, Toni Mancini, Fabian Ille, Marcel Egli, Susanna Röblitz, Rainald Ehrig, Lanja Saleh, Katharina Spanaus, Cordula Schippert, Yuanyuan Zhang, Brigitte Leeners | Negative affect is unrelated to fluctuations in hormone levels across the menstrual cycle: evidence from a multisite observational study across two successive cycles | Journal of Psychosomatic Research, Vol.99, pp. 21-27, 2017 |
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Jonas Röhm | Non-Negative Matrix Factorization for Raman Data Spectral Analysis | Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017 |
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Felix Binkowski | On the convergence behavior of spectral deferred correction methods for convection-diffusion equations | Master's thesis, Technische Universität Berlin, Jörg Liesen, Martin Weiser (Advisors), 2017 (preprint available as ZIB-Report 17-53) |
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Lisa Fischer | On the convergence of inexact time parallel time integration | Master's thesis, Technische Universität Berlin, Martin Weiser, Kersten Schmidt (Advisors), 2017 |
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Klaus Jäger, Grit Köppel, David Eisenhauer, Duote Chen, Martin Hammerschmidt, Sven Burger, Christiane Becker | Optical simulations of advanced light management for liquid-phase crystallized silicon thin-film solar cells | Proc. SPIE, Vol.10356, p. 103560F, 2017 |
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Yvonne Freytag | Optimal Experimental Design to Estimate the Time of Death in a Bayesian Context | Master's thesis, Technische Universität Berlin, Martin Weiser, Dietmar Hömberg (Advisors), 2017 (preprint available as ZIB-Report 17-14) |
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Frank Schmidt | Photonics | Handbook of Optoelectronic Device Modeling and Simulation, Joachim Piprek (Ed.), CRC Press, 2017, ISBN: 9781498749381 |
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Jon Cockayne, Chris Oates, T. J. Sullivan, Mark Girolami | Probabilistic Numerical Methods for PDE-constrained Bayesian Inverse Problems | Proceedings of the 36th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, pp. 060001-1-060001-8, Vol.1853, AIP Conference Proceedings, 2017 |
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DOI arXiv |
Martin Hammerschmidt, Martin Weiser, Xavier Garcia Santiago, Lin Zschiedrich, Bernd Bodermann, Sven Burger | Quantifying parameter uncertainties in optical scatterometry using Bayesian inversion | Proc. SPIE, Vol.10330, p. 1033004, 2017 (preprint available as ZIB-Report 17-37) |
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Wei Zhang, Christof Schütte | Reliable approximation of long relaxation timescales in molecular dynamics | Entropy, 19(7), 2017 (preprint available as ZIB-Report 17-19) |
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Nikolay Ledentsov, Jr., Vitaly Shchukin, Jörg-R. Kropp, Lin Zschiedrich, Frank Schmidt, Nikolay Ledentsov, Jr. | Resonant cavity light–emitting diodes based on dielectric passive cavity structures | Proc. SPIE, Vol.10124, p. 101240O, 2017 |
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Marcus Weber, Konstantin Fackeldey, Christof Schütte | Set-Free Markov State Model Building | Journal of Chemical Physics, 146(12), 2017 (preprint available as ZIB-Report 17-10) |
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Rudolf Huttary, Leonid Goubergrits, Christof Schütte, Stefan Bernhard | Simulation, Identification and Statistical Variation in Cardiovascular Analysis (SISCA) - a Software Framework for Multi-compartment Lumped Modeling | Computers in Biology and Medicine, Vol.87, pp. 104-123, 2017 |
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David Eisenhauer, Grit Köppel, Klaus Jäger, Duote Chen, Oleksandra Shargaieva, Paul Sonntag, Daniel Armkreutz, Bernd Rech, Christiane Becker | Smooth anti-reflective three-dimensional textures for liquid phase crystallized silicon thin-film solar cells on glass | Sci. Rep., Vol.7, p. 2658, 2017 |
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Jannes Quer, Han Cheng Lie | Some connections between importance sampling and enhanced sampling methods in molecular dynamics | Journal of Chemical Physics, 2017 (accepted for publication on 2017-10-31, preprint available as ZIB-Report 17-30) |
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Tim Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander Benedikt Leichtle, Jan Vybiral, Gitta Kytyniok, Christof Schütte | Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data | BMC Bioinfomatics, 18(160), 2017 |
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Martin Weiser, Simone Scacchi | Spectral Deferred Correction methods for adaptive electro-mechanical coupling in cardiac simulation | G. Russo et al.(eds.) Progress in Industrial Mathematics at ECMI 2014, pp. 321-328, 2017 (preprint available as ZIB-Report 14-22) |
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Oleksandra Makarenko | Square Root Approximation und statistische Umgewichtungstechnik für das Faltungsverhalten von Polymerbürsten | Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2017 |
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Peter Deuflhard | The Grand Four | ZIB-Report 17-70 |
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Muluneh G. Abebe, Guillaume Gomard, Lin Zschiedrich, Carsten Rockstuhl, Ulrich W. Paetzold, Aimi Abass | Thermodynamics of Photon Recycling in Four Terminal Perovskite/si Tandem Solar Cells | Optical Nanostructures and Advanced Materials for Photovoltaics, p. PM4A.2, 2017 |
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Jan Müller, Sebastian Götschel, Martin Weiser, Christiane Maierhofer | Thermografie mit optimierter Anregung für die quantitative Untersuchung von Delaminationen in kohlenstofffaserverstärkten Kunststoffen | NDT.net Proc. DGZfP 2017, 2017 |
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Gernot Bauer, Nadezhda Gribova, Alexander Lange, Christian Holm, Joachim Gross | Three-body effects in triplets of capped gold nanocrystals | Molecular Physics, Vol.115, pp. 1031-1040, 2017 |
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S. Rüdrich, Marco Sarich, Christof Schütte | Utilizing hitting times for finding metastable sets in non-reversible Markov chains | Journal of Comp. Dynamics, 2017 (under review, preprint available as ZIB-Report 14-32) |
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Carsten Hartmann, Lorenz Richter, Christof Schütte, Wei Zhang | Variational characterization of free energy: theory and algorithms | Entropy, 19(11), 2017 (preprint available as ZIB-Report 17-52) |
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T. J. Sullivan | Well-posed Bayesian inverse problems and heavy-tailed stable quasi-Banach space priors | Inverse Problems and Imaging, 11(5), pp. 857-874, 2017 (preprint available as ZIB-Report 16-30) |
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T. J. Sullivan | Well-posedness of Bayesian inverse problems in quasi-Banach spaces with stable priors | 88th Annual Meeting of the International Association of Applied Mathematics and Mechanics (GAMM), Weimar 2017, pp. 871-874, 17(1), Proceedings in Applied Mathematics and Mechanics, 2017 |
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Benjamin Wohlfeil, Georg Rademacher, Christos Stamatiadis, Karsten Voigt, Lars Zimmermann, Klaus Petermann | A Two Dimensional Fiber Grating Coupler on SOI for Mode Division Multiplexing | IEEE Photon. Technol. Lett., Vol.28, p. 1241, 2016 |
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Kaspar Bienefeld, Fred Zautke, Pooja Gupta | A novel method for undisturbed long-term observation of the honey bee (Apis mellifera) behaviour – illustrated by the hygienic behaviour towards Varroa infestation | Journal of Apicultural Research, Vol.54(5), pp. 541-547, 2016 |
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Tomasz Badowski | Adaptive importance sampling via minimization of estimators of cross-entropy, mean square and inefficiency constants | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 |
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Felicia Burtscher | Algorithmic approaches to the change-point problem for ovulation detection in the human menstrual cycle | Bachelor's thesis, Freie Universität Berlin, Susanna Röblitz, Marcus Weber (Advisors), 2016 |
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Larissa K. S. Krebek, von, Andreas J. Achazi, Marthe Solleder, Marcus Weber, Beate Paulus, Christoph A. Schalley | Allosteric and Chelate Cooperativity in Divalent Crown Ether–Ammonium Complexes with Strong Binding Enhancements | Chem. Eur. J., 22(43), pp. 15475-15484, 2016 |
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Rainald Ehrig, Thomas Dierkes, Stefan Schäfer, Susanna Röblitz, Enrico Tronci, Toni Mancini, Ivano Salvo, Vadim Alimguzhin, Federico Mari, Igor Melatti, Annalisa Massini, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille, Brigitte Leeners | An integrative approach for model driven computation of treatments in reproductive medicine | BIOMAT - Proceedings of the 15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2016 (preprint available as ZIB-Report 16-04) |
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Vedat Durmaz | Atomistic Binding Free Energy Estimations for Biological Host–Guest Systems | Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016 |
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Peter Schnauber, Alexander Thoma, Christoph V. Heine, Alexander Schlehahn, Liron Gantz, Manuel Gschrey, Ronny Schmidt, Caspar Hopfmann, Benjamin Wohlfeil, Jan-Hindrick Schulze, Andre Strittmatter, Tobias Heindel, Sven Rodt, Ulrike Woggon, David Gershoni, Stephan Reitzenstein | Bright Single-Photon Sources Based on Anti-Reflection Coated Deterministic Quantum Dot Microlenses | Technologies, 4(1), p. 1, 2016 |
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Han Cheng Lie, T. J. Sullivan | Cameron--Martin theorems for sequences of Cauchy-distributed random variables | arXiv, p. 1608.03784, 2016 |
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arXiv |
Han Cheng Lie, T. J. Sullivan | Cameron--Martin theorems for sequences of Cauchy-distributed random variables | ZIB-Report 16-40 |
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Philipp Gutsche, Raquel Mäusle, Sven Burger | Circular polarization phenomena in chiral nano-optical devices | Light, Energy and the Environment 2016, p. JW4A.4, OSA Technical Digest, 2016 |
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Jakob Rosenkrantz de Lasson, Lars Hagedorn Frandsen, Sven Burger, Philipp Gutsche, Oleksiy S. Kim, Olav Breinbjerg, Ole Sigmund, Jesper Mork, Niels Gregersen | Comparison of four computational methods for computing Q factors and resonance wavelengths in photonic crystal membrane cavities | Proceedings of the 7th International Conference on Metamaterials, Photonic Crystals and Plasmonics, 2016 |
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Adam Nielsen | Computation Schemes for Transfer Operators | Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016 |
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Victor Soltwisch, Anton Haase, Jan Wernecke, Jürgen Probst, Max Schoengen, Sven Burger, Michael Krumrey, Frank Scholze | Correlated diffuse x-ray scattering from periodically nanostructured surfaces | Phys. Rev. B, Vol.94, p. 035419, 2016 |
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DOI arXiv |
Adrian Sali | Coupling of Monodomain and Eikonal Models for Cardiac Electrophysiology | Master's thesis, Freie Universität Berlin, Martin Weiser (Advisor), 2016 (preprint available as ZIB-Report 16-50) |
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Martin Hammerschmidt, Carlo Barth, Sven Burger, Christiane Becker, Frank Schmidt | Determining 2D photonic crystal geometries from reflectance spectra with a reduced basis method | Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 281, 2016, ISBN: 978-1-5108-4796-5 |
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Nikolay Ledentsov, Jr., Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Sven Burger, Frank Schmidt | Direct Evidence of the Leaky Emission in Oxide-Confined Vertical Cavity Lasers | IEEE J. Quant. Electron., 52(3), p. 2400207, 2016 |
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Nikolay Ledentsov, Jr., Vitaly Shchukin, Jörg-R. Kropp, Sven Burger, Frank Schmidt, Nikolay Ledentsov, Jr. | Direct visualization of the in-plane leakage of high-order transverse modes in vertical-cavity surface-emitting lasers mediated by oxide-aperture engineering | Proc. SPIE, Vol.9766, p. 976608, 2016 |
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Wei Zhang, Carsten Hartmann, Christof Schütte | Effective dynamics along given reaction coordinates, and reaction rate theory | Faraday Discussions, pp. 365-394, 2016 (preprint available as ZIB-Report 16-35) |
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Bálint Fodor, Peter Kozma, Sven Burger, Miklos Fried, Peter Petrik | Effective medium approximation of ellipsometric response from random surface roughness simulated by finite-element method | Thin Solid Films, Vol.617, p. 20, 2016 |
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DOI arXiv |
Katharina Heye, Dennis Becker, Christian Lütke-Eversloh, Vedat Durmaz, Thomas Ternes, Matthias Oetken, Jörg Oehlmann | Effects of carbamazepine and two of its metabolites on the non-biting midge Chironomus riparius in a sediment full life cycle toxicity test | Water Research, Vol.98, pp. 19-27, 2016 |
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Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz | Empirical Bayes Methods for Prior Estimation in Systems Medicine | ZIB-Report 16-57 |
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Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz | Empirical Bayes Methods, Reference Priors, Cross Entropy and the EM Algorithm | ZIB-Report 16-56 |
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Andreas Grever | Estimating Missing Entries of a Partial Mean First Passage Time Matrix | Master's thesis, Technische Universität Berlin, Konstantin Fackeldey, Marcus Weber (Advisors), 2016 |
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Natasa Djurdjevac Conrad, Marcus Weber, Christof Schütte | Finding dominant structures of nonreversible Markov processes | Multiscale Modeling and Simulation, 14(4), pp. 1319-1340, 2016 (preprint available as ZIB-Report 15-40) |
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Iliusi Vega, Christof Schütte, Tim Conrad | Finding metastable states in real-world time series with recurrence networks | Physica A: Statistical Mechanics and its Applications, Vol.445, pp. 1-17, 2016 |
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Lin Zschiedrich, Frank Schmidt, Jan Pomplun, Sven Burger | Finite elements for nano-optics applications | Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 178, 2016, ISBN: 978-1-5108-4796-5 |
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Alexander Lange, Julia Plöntzke, Stefan Schäfer, Susanna Röblitz | Follicular maturation in cows: mathematical models and data | 10. European Conference on Mathematical and Theoretical Biology, 2016 |
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Andreas Spötter, Pooja Gupta, Manfred Mayer, Norbert Reinsch, Kaspar Bienefeld | Genome-wide association study of a Varroa-specific defense behavior in honeybees (Apis mellifera) | Journal of Heredity, 107(3), pp. 220-227, 2016 |
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Jose Villatoro, Martin Zühlke, Daniel Riebe, Jens Riedel, Toralf Beitz, Hans-Gerd Löhmannsröben | IR-MALDI ion mobility spectrometry | Analytical and Bioanalytical Chemistry, 408(23), pp. 6259-6268, 2016 |
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José Villatoro, Martin Zühlke, Daniel Riebe, Toralf Beitz, Marcus Weber, Jens Riedel, Hans-Gerd Löhmannsröben | IR-MALDI ion mobility spectrometry: physical source characterization and application as HPLC detector | International Journal for Ion Mobility Spectrometry, pp. 197-297, 2016 |
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Hannah Schuh | Identification of Anisotropies in Welding Seams Using Ultrasound Measurements | Master's thesis, Technische Universität Berlin, Fredi Tröltzsch, Martin Weiser (Advisors), 2016 |
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Carlo Barth, Sebastian Roder, Daniel Brodoceanu, Tobias Kraus, Sven Burger, Martin Hammerschmidt, Frank Schmidt, Christiane Becker | Increased fluorescence of PbS quantum dots on photonic crystal slab structures | Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 181, 2016, ISBN: 978-1-5108-4796-5 |
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Martin Weiser | Inside Finite Elements | De Gruyter, 2016 |
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Aimi Abass, Philipp Gutsche, Bjorn Maes, Carsten Rockstuhl, Emiliano R Martins | Insights into directional scattering: from coupled dipoles to asymmetric dimer nanoantennas | Opt. Express, 24(17), pp. 19638-19650, 2016 |
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Antti Lassila, Maksim Shpak, A. Vaigu, M. Smid, A. Velasco, A. Pokatilov, I. Fatadin, R. Ferguson, D. Robinson, T. Walbaum, Sven Burger, Mertsi Haapalainen, P. Vahimaa, H. Lukner, W. Pernice, R. Pitwon, A. Deninger, Jacques Morel, Natascia Castagna, O. Peters, H. Husu | Joint research for photonics fibres, waveguides and interconnects | Proc. Europ. Opt. Soc. Ann. Meet. 2016 (EOSAM), p. 25, 2016, ISBN: 978-1-5108-4796-5 |
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Philipp Gutsche, Raquel Mäusle, Sven Burger | Locally Enhanced and Tunable Optical Chirality in Helical Metamaterials | Photonics, Vol.3, p. 60, 2016 |
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DOI arXiv |
Raheem Gul | Mathematical Modeling and Sensitivity Analysis of Lumped Parameter Model of the Human Cardiovascular System | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 |
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Stefan Schäfer, Julia Plöntzke, Susanna Röblitz | Mathematical Modelling of Follicular Maturation in Cows and Women | 49. Jahrestagung der Physiologie und Pathologie der Fortpflanzung und gleichzeitig 41. Veterinär-Humanmedizinische Gemeinschaftstagung 2016, Leipzig., 2016 (epub ahead of print) |
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Raheem Gul, Christof Schütte, Stefan Bernhard | Mathematical modeling and sensitivity analysis of arterial anastomosis in arm arteries | Applied Mathematical Modelling, 2016 (preprint available as ZIB-Report 15-22) |
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Jan Pomplun, Sven Burger, Lin Zschiedrich, Philipp Gutsche, Frank Schmidt | Method for fast computation of angular light scattering spectra from 2D periodic arrays | Proc. SPIE, Vol.9778, p. 977839, 2016 |
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DOI arXiv |
Adman Daragmeh | Model Order Reduction of Linear Control Systems: Comparison of Balance Truncation and Singular Perturbation Approximation with Application to Optimal Control | Doctoral thesis, Freie Universität Berlin, Carsten Hartmann, Christof Schütte (Advisors), 2016 |
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Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Sven Burger, Frank Schmidt | Model order reduction for the time-harmonic Maxwell equation applied to complex nanostructures | Proc. SPIE, Vol.9742, p. 97420M, 2016 (preprint available as ZIB-Report 16-05) |
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Carsten Hartmann, Christof Schütte, Wei Zhang | Model reduction algorithms for optimal control and importance sampling of diffusions | Nonlinearity, 29(8), pp. 2298-2326, 2016 |
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Mohamed Omari, Julia Plöntzke, Mascha Berg, Susanna Röblitz | Modelling of glucose-insulin metabolism and its effect on the estrous cycle in bovine | Annual Meeting of the Population Approach Group in Europe, 2016 |
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Marthe Solleder | Molecular Dynamics Simulations : What is the Effect of a Spin Probe on the Drug Loading of a Nanocarrier | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2016 |
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Nikolay Ledentsov, Jr., Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Sven Burger, Frank Schmidt | New Generation of Vertical-Cavity Surface-Emitting Lasers for Optical Interconnects | Future Trends in Microelectronics: Journey into the Unknown, John Wiley & Sons, 2016 |
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Carlo Barth, Jürgen Probst, Sven Herrmann, Martin Hammerschmidt, Christiane Becker | Numerical characterization of symmetry properties for photonic crystals with hexagonal lattice | Proc. SPIE, Vol.9885, p. 988506, 2016 |
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Klaus Jäger, Martin Hammerschmidt, Grit Köppel, Sven Burger, Christiane Becker | On Accurate Simulations of Thin-Film Solar Cells With a Thick Glass Superstrate | Light, Energy and the Environment 2016, p. PM3B.5, OSA Technical Digest, 2016 |
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Peter Koltai, Giovanni Ciccotti, Christof Schütte | On Markov state models for non-equilibrium molecular dynamics | The Journal of Chemical Physics, 145(174103), 2016 (preprint available as ZIB-Report 16-11) |
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Han Cheng Lie | On a strongly convex approximation of a stochastic optimal control problem for importance sampling of metastable diffusions | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 |
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Stefan Klus, Peter Koltai, Christof Schütte | On the numerical approximation of the Perron-Frobenius and Koopman operator | Journal of Computational Dynamics, 3(1), pp. 51-77, 2016 |
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David Eisenhauer, Klaus Jäger, Grit Köppel, Bernd Rech, Christiane Becker | Optical Properties of Smooth Anti-reflective Three-dimensional Textures for Silicon Thin-film Solar Cells | Energy Procedia, Vol.102, pp. 27-35, 2016 |
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Philipp Gutsche, Lisa Poulikakos, Sven Burger, Martin Hammerschmidt, Frank Schmidt | Optical chirality: conservation law in arbitrary space | 606. WE-Heraeus-Seminar on Nanophotonics and Complex Spatial Modes of Light, 2016 |
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Martin Hammerschmidt | Optical simulation of complex nanostructured solar cells with a reduced basis method | Doctoral thesis, Freie Universität Berlin, Frank Schmidt, Bernd Rech, Ralf Kornhuber (Advisors), 2016 |
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Philipp Gutsche, Matthias Läuter, Frank Schmidt | Parameter-dependent Parallel Block Sparse Arnoldi and Döhler Algorithms on Distributed Systems | ZIB-Report 16-15 |
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Animesh Agarwal | Path Integral Techniques in Molecular Dynamics Simulations of Open Boundary Systems | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 |
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Ilja Klebanov, Alexander Sikorski, Christof Schütte, Susanna Röblitz | Prior estimation and Bayesian inference from large cohort data sets | ZIB-Report 16-09 |
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Sebastian Götschel, Christiane Maierhofer, Jan Müller, Nick Rothbart, Martin Weiser | Quantitative Defect Reconstruction in Active Thermography for Fiber-Reinforced Composites | Proceedings 19th World Conference on Non-Destructive Testing (WCNDT 2016), 2016 (preprint available as ZIB-Report 16-13) |
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Sebastian Götschel, Christian Höhne, Sanjeevareddy Kolkoori, Steffen Mitzscherling, Jens Prager, Martin Weiser | Ray Tracing Boundary Value Problems: Simulation and SAFT Reconstruction for Ultrasonic Testing | Proceedings 19th World Conference on Non-Destructive Testing (WCNDT 2016), 2016 (preprint available as ZIB-Report 16-14) |
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Iliusi Vega | Reconstruction and analysis of the state space for the identification of dynamical states in real-world time-series | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 |
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Alexander Lange | Reconstruction of disease transmission rates: applications to measles, dengue, and influenza | Journal of Theoretical Biology, Vol.400, pp. 138-153, 2016 |
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Martin Hammerschmidt, Carlo Barth, Jan Pomplun, Sven Burger, Christiane Becker, Frank Schmidt | Reconstruction of photonic crystal geometries using a reduced basis method for nonlinear outputs | Proc. SPIE, Vol.9756, p. 97561R, 2016 (preprint available as ZIB-Report 16-06) |
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Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Sven Burger, Frank Schmidt | Reduced basis method for electromagnetic scattering problem: a case study for FinFETs | Optical and Quantum Electronics, Vol.48, p. 250, 2016 (preprint available as ZIB-Report 16-10) |
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Phillip Manley | Simulation of Plasmonic Nanoparticles in Thin Film Solar Cells | Doctoral thesis, Freie Universität Berlin, Martina Schmid, Frank Schmidt (Advisors), 2016 |
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Klaus Jäger, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker | Simulations of sinusoidal nanotextures for coupling light into c-Si thin-film solar cells | Opt. Express, Vol.24, p. A569, 2016 |
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Klaus Jäger, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker | Sinusoidal Nanotextures for Enhanced Light Management in Thin-Film Solar Cells | 28th Workshop on Quantum Solar Energy Conversion - (QUANTSOL), European Society for Quantum Solar Energy Conversion (Ed.), 2016 |
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Klaus Jäger, Grit Köppel, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker | Sinusoidal gratings for optimized light management in c-Si thin-film solar cells | Proc. SPIE, Vol.9898, p. 989808, 2016 |
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Patrick Gelß, Sebastian Matera, Christof Schütte | Solving the master equation without kinetic Monte Carlo: Tensor train approximations for a CO oxidation model | Journal of Computational Physics, Vol.314, pp. 489-502, 2016 |
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Nisara Sriwattanaworachai | Spectral approach to metastability of non-reversible complex processes | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2016 |
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Carlo Barth, Sven Burger, Christiane Becker | Symmetry-Dependency of Anticrossing Phenomena in Slab-Type Photonic Crystals | Opt. Express, Vol.24, p. 10931, 2016 |
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Philipp Gutsche, Raquel Mäusle, Sven Burger | Tailoring local optical chirality in helical metamaterials | 2016 10th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, pp. 73-75, IEEE, 2016 |
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Jon Wilson, Sven Herrmann, Philipp Gutsche, Sven Burger, Kevin McPeak | The Chiral Coefficient: Rapid Optimization of Broadband Plasmonic Chirality | 2016 MRS Fall Meeting & Exhibit, 2016 |
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Adam Nielsen | The Monte Carlo Computation Error of Transition Probabilities | Statistics & Probability Letters, Vol.118, pp. 163-170, 2016 (preprint available as ZIB-Report 16-37) |
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Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris | The Optical Chirality Flux as a Useful Far-Field Probe of Chiral Near Fields | ACS Photonics, Vol.3, p. 1619, 2016 |
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Stefanie Winkelmann, Christof Schütte | The Spatiotemporal Master Equation: Approximation of Reaction-Diffusion Dynamics via Markov State Modeling | Journal of Chemical Physics, 145(21), 2016 (preprint available as ZIB-Report 16-60) |
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Philipp Gutsche, Lisa Poulikakos, Martin Hammerschmidt, Sven Burger, Frank Schmidt | Time-harmonic optical chirality in inhomogeneous space | Proc. SPIE, Vol.9756, p. 97560X, 2016 |
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DOI arXiv |
Stefan Klus, Christof Schütte | Towards tensor-based methods for the numerical approximation of the Perron-Frobenius and Koopman operator | Journal of Computational Dynamics, 3(2), pp. 139-161, 2016 |
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Guillaume Sagnol, Hans-Christian Hege, Martin Weiser | Using sparse kernels to design computer experiments with tunable precision | ZIB-Report 16-33 (Appeared in: Ana Colubi, Angela Blanco and Cristian Gatu (eds.) 22nd Intern. Conf. on Computational Statistics - COMSTAT 2016, Oviedo, Spain, 23-26 August 2016, Proceedings ISBN 978-90-73592-36-0. Pp. 397-408) |
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Christian Tobias Willenbockel, Christof Schütte | Variational Bayesian Inference and Model Selection for the Stochastic Block Model with Irrelevant Vertices | ZIB-Report 16-01 |
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Christof Schütte, Marco Sarich | A Critical Appraisal of Markov State Models | The European Physical Journal Special Topics, 224(12), pp. 2445-2462, 2015 (preprint available as ZIB-Report 15-18) |
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Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris | A Far-Field Interpretation of Optical Chirality in Analogy to Poynting’s Theorem | META '15 Proceedings, pp. 1215-1216, 2015 |
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Lisa Poulikakos, Philipp Gutsche, Kevin McPeak, Sven Burger, Jens Niegemann, Christian Hafner, David Norris | A Far-Field Interpretation of the Optical Chirality | Frontiers in Nanophotonics (Congressi Stefano Franscini), 2015 |
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Heide Boeth, Georg Duda, Daniel Hinzmann, Sandra Hermann, William R. Taylor, Rainald Ehrig, Tom Witaschek, Frank Buttgereit | A Novel Approach to Quantify Morning Stiffness in Patients with Rheumatoid Arthritis | Annual European Congress of Rheumatology, EULAR 2015, Rome, 2015 |
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Christian Tobias Willenbockel, Christof Schütte | A Variational Bayesian Algorithm for Clustering of Large and Complex Networks | ZIB-Report 15-25 |
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Peter Deuflhard, Susanna Röblitz | A guide to numerical modelling in systems biology | Springer, 2015, ISBN: 978-3-319-20058-3 |
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Kaspar Bienefeld, Andreas Spötter, Norbert Reinsch, Manfred Mayer, Pooja Gupta | A new approach for honeybee breeding - genomic selection | 44th Apimondia International Apicultural congress, 2015. Daejeon, South Korea, 2015 |
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Julia Plöntzke, Mascha Berg, Claudia Stötzel, Susanna Röblitz | A systems biology approach to bovine fertility and metabolism: Introduction of a glucose insulin model | 15th International Symposium on Mathematical and Computational Biology, Rorkee, India, 2015 (preprint available as ZIB-Report 15-51) |
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Sebastian Götschel | Adaptive Lossy Trajectory Compression for Optimal Control of Parabolic PDEs | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2015 |
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Lars Lubkoll | An Optimal Control Approach to Implant Shape Design : Modeling, Analysis and Numerics | Doctoral thesis, Universität Bayreuth, Anton Schiela (Advisor), 2015 |
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Christoph Lange | Approximating and Clustering Markov Chains via Kullback-Leibler-Divergence | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 |
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Claudia Stötzel, Susanna Röblitz, Heike Siebert | Complementing ODE-based System Analysis Using Boolean Networks Derived from an Euler-like Transformation | PLOS ONE, 2015 (preprint available as ZIB-Report 15-46) |
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Vedat Durmaz, Marcus Weber, Meyer, Mückter | Computergestützte Simulationen zur Abschätzung gesundheitlicher Risiken durch anthropogene Spurenstoffe der Wassermatrix | KA Korrespondenz Abwasser, Abfall, Vol.3/15, pp. 264-267, 2015 |
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Adam Nielsen, Marcus Weber | Computing the nearest reversible Markov chain | Numerical Linear Algebra with Applications, 22(3), pp. 483-499, 2015 (preprint available as ZIB-Report 14-48) |
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Thomas Dierkes | Construction of ODE systems from time series data by a highly flexible modelling approach | ArXiv e-prints, Vol.math.NA 1512.03357, 2015 (preprint available as ZIB-Report 15-59) |
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Philipp Gutsche, Christian Wolff, Sayyed R. Mirnaziry, Christopher G. Poulton | Coupled-Mode Equations for Stimulated Brillouin Scattering | CUDOS 14th Annual Workshop 2015 Handbook, 2015 |
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Konstantin Fackeldey | Crossing the Scales in Structural Mechanics and Molecular Research | Habilitation, Technische Universität Berlin, 2015 |
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Phillip Manley, Sven Burger, Frank Schmidt, Martina Schmid | Design Principles for Plasmonic Nanoparticle Devices | Progress in Nonlinear Nano-Optics, Shuji Sakabe, Christoph Lienau, Rüdiger Grunwald (Eds.), Springer, Nano-Optics and Nanophotonics, pp. 223-247, 2015 |
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Carlo Barth, Klaus Jäger, Sven Burger, Martin Hammerschmidt, Frank Schmidt, Christiane Becker | Design of Photonic Crystals with Near-Surface Field Enhancement | Light, Energy and the Environement 2015, p. JTu5A.9, OSA Technical Digest, 2015 |
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Oliver Zwingel | Die Cross-Entropy-Methode für stochastische Optimierungsprobleme | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 |
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Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Gunther Steinle, Nikolay Ledentsov, Jr., Kent D. Choquette, Sven Burger, Frank Schmidt | Engineering of optical modes in vertical-cavity microresonators by aperture placement: applications to single-mode and near-field lasers | Proc. SPIE, p. 93810V, Vol.9381, 2015 |
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Marcus Weber, Jannes Quer | Estimating exit rates in rare event dynamical systems via extrapolation | ZIB-Report 15-54 |
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Martin Weiser | Faster SDC convergence on non-equidistant grids by DIRK sweeps | BIT Numerical Mathematics, 55(4), pp. 1219-1241, 2015 (preprint available as ZIB-Report 13-30) |
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Peter Petrik, Nitish Kumar, Miklos Fried, Bálint Fodor, György Juhász, Silvania Pereira, Sven Burger, H. Paul Urbach | Fourier ellipsometry – an ellipsometric approach to Fourier scatterometry | J. Eur. Opt. Soc.-Rapid, Vol.10, p. 15002, 2015 |
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Marcus Weber, Konstantin Fackeldey | G-PCCA: Spectral Clustering for Non-reversible Markov Chains | ZIB-Report 15-35 |
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Frank Abendroth, Marthe Solleder, Pia Welker, Kai Licha, Marcus Weber, Oliver Seitz, Dorothea Mangoldt | High affinity flourescence labelled ligands for the estrogen receptor | Eur. J. Org. Chem., 2015(10), pp. 2157-2166, 2015 |
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Nikolay Ledentsov, Jr., Jörg-R. Kropp, Vitaly Shchukin, Gunther Steinle, Nikolay Ledentsov, Jr., Jarek P. Turkiewicz, Bo Wu, Qiu Shaofeng, Yanan Ma, Feng Zhiyong, Sven Burger, Frank Schmidt, Christoph Caspar, Ronald Freund, Kent D. Choquette | High-speed modulation, wavelength, and mode control in vertical-cavity surface-emitting lasers | Proc. SPIE, p. 93810F, Vol.9381, 2015 |
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Manuel Gschrey, Alexander Thoma, Peter Schnauber, Marc Seifried, Ronny Schmidt, Benjamin Wohlfeil, Luzy Krüger, Jan-Hindrick Schulze, Tobias Heindel, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Stephan Reitzenstein | Highly indistinguishable photons from deterministic quantum-dot microlenses utilizing three-dimensional in situ electron-beam lithography | Nature Communications, Vol.6, p. 7662, 2015 |
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Sven Burger, Philipp Gutsche, Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Frank Schmidt, Benjamin Wohlfeil, Lin Zschiedrich | Hp-finite-elements for simulating electromagnetic fields in optical devices with rough textures | Proc. SPIE, p. 96300S, Vol.9630, 2015 |
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DOI arXiv |
Sinaida Igde, Hendrik Wölk, Susanna Röblitz, Marco Reidelbach, Marcus Weber, Laura Hartmann | Identifying Multivalent Binding Kinetics of Precision Glycomacromolecules: A Kinetic Study Using kinITC | Münster Symposium on Cooperative Effects 2015 - SFB 858, at Westfälische Wilhelms-Universität Münster, 2015, 2015 |
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Christian Wolff, Philipp Gutsche, Michael J. Steel, Benjamin J. Eggleton, Christopher G. Poulton | Impact of nonlinear loss on stimulated Brillouin scattering | J. Opt. Soc. Am. B, 32(9), pp. 1968-1978, 2015 |
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DOI arXiv |
Alexander Thoma, Peter Schnauber, Manuel Gschrey, Ronny Schmidt, Benjamin Wohlfeil, Marc Seifried, Jan-Hindrick Schulze, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Tobias Heindel, Stephan Reitzenstein | Indistinguishable Photons from Deterministic Quantum Dot Microlenses | European Conference on Lasers and Electro-Optics - European Quantum Electronics Conference, p. EA_8_5, 2015 |
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Alexander Thoma, Peter Schnauber, Manuel Gschrey, Ronny Schmidt, Benjamin Wohlfeil, Marc Seifried, Jan-Hindrick Schulze, Sven Burger, Frank Schmidt, Andre Strittmatter, Sven Rodt, Tobias Heindel, Stephan Reitzenstein | Indistinguishable Photons from Deterministically Fabricated Quantum Dot Microlenses | Advanced Photonics, p. IS4A.6, OSA Technical Digest, 2015 |
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Marta Enciso, Christof Schütte, Luigi Delle Site | Influence of pH and sequence in peptide aggregation via molecular simulation | Journal of Chemical Physics, 143(24), 2015 (preprint available as ZIB-Report 15-42) |
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Benjamin Wohlfeil | Integrated fiber grating couplers in silicon photonics | Doctoral thesis, Technische Universität Berlin, Klaus Petermann (Advisor), 2015 |
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Maryam Hajizadeh, Pascal Schütz, Renate List, Heide Boeth, Rainald Ehrig, Barbara Postolka, Michael A. R. Freeman, William R. Taylor | Interpretation of tibio-femoral kinematics critically depends upon the kinematic analysis approach | ISB 2015, 25th congress of the International Society of Biomechanics, Glasgow, 2015 |
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T. J. Sullivan | Introduction to Uncertainty Quantification | Springer, 2015, ISBN: 978-3-319-23394-9 |
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Susanne Röhl | Kondition des Eigenwertproblems von Markov-Ketten | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 |
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Jessica Schöpke | Korrelation für lineare und nichtlineare Zusammenhänge | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 |
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Jessica Schöpke | Korrelation für lineare und nichtlineare Zusammenhänge | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 |
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Sebastian Götschel, Martin Weiser | Lossy Compression for PDE-constrained Optimization: Adaptive Error Control | Comput. Optim. Appl., 62(1), pp. 131-155, 2015 (preprint available as ZIB-Report 13-27) |
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Christof Schütte, Adam Nielsen, Marcus Weber | Markov State Models and Molecular Alchemy | Molecular Physics, 113(1), pp. 69-78, 2015 (preprint available as ZIB-Report 14-05) |
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Vedat Durmaz | Markov model-based polymer assembly from force field-parameterized building blocks | Journal of Computer-Aided Molecular Design, Vol.29, pp. 225-232, 2015 |
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Martin Krämer, Karl-Heinz Herrmann, Heide Boeth, Christoph von Tycowicz, Christian König, Stefan Zachow, Rainald Ehrig, Hans-Christian Hege, Georg Duda, Jürgen Reichenbach | Measuring 3D knee dynamics using center out radial ultra-short echo time trajectories with a low cost experimental setup | ISMRM (International Society for Magnetic Resonance in Medicine), 23rd Annual Meeting 2015, Toronto, Canada, 2015 |
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Natasa Djurdjevac Conrad, Ralf Banisch, Christof Schütte | Modularity of Directed Networks: Cycle Decomposition Approach | Journal of Computational Dynamics 2 (2015) pp. 1-24, 2015 (preprint available as ZIB-Report 14-31) |
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Annett Meier | Monte-Carlo-Verfahren zur Niedrig-Rang Approximation | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 |
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Heide Boeth, Georg Duda, Daniel Hinzmann, William R. Taylor, Rainald Ehrig, Tom Witaschek, Frank Buttgereit | Objektive Quantifizierung der Morgensteifigkeit als Parameter für rheumatoide Arthritis im Metacarpophalangealgelenk | 9. Jahrestagung der Deutschen Gesellschaft für Biomechanik (DGfB), Bonn, 2015 |
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Houman Owhadi, Clint Scovel, T. J. Sullivan | On the Brittleness of Bayesian Inference | SIAM Review, 57(4), pp. 566-582, 2015 |
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Thomas Dierkes, Karl Michael Ortmann | On the efficient utilisation of duration | Insurance: Mathematics and Economics, Vol.60, pp. 29-37, 2015 |
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Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist | Optimal Treatment Strategies in the Context of 'Treatment for Prevention' against HIV/1 in Resource-Poor Settings | PloS Computational Biology, 11(4), 2015 |
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Dany Pascal Moualeu-Ngangue, Martin Weiser, Rainald Ehrig, Peter Deuflhard | Optimal control for a tuberculosis model with undetected cases in Cameroon | Communications in Nonlinear Science and Numerical Simulation, 20(3), pp. 986-1003, 2015 (preprint available as ZIB-Report 13-73) |
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Alexander Sikorski | PCCA+ and Its Application to Spatial Time Series Clustering | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2015 |
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Dany Pascal Moualeu-Ngangue, Susanna Röblitz, Rainald Ehrig, Peter Deuflhard | Parameter Identification in a Tuberculosis Model for Cameroon | PLOS ONE, 2015 (preprint available as ZIB-Report 13-72) |
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Koschek, Vedat Durmaz, Krylova, Wieczorek, Pooja Gupta, Richter, Alexander Bujotzek, Fischer, Rainer Haag, Freund, Marcus Weber, Rademann | Peptide polymer ligands for a tandem WW-domain, a soft multivalent protein-protein interaction: lessons on the thermodynamic fitness of flexible ligands | Beilstein J. Org. Chem., Vol.11, pp. 837-847, 2015 |
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Christian Wolff, Philipp Gutsche, Michael J. Steel, Benjamin J. Eggleton, Christopher G. Poulton | Power limits and a figure of merit for stimulated Brillouin scattering in the presence of third and fifth order loss | Opt. Express, 23(20), pp. 26628-26638, 2015 |
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DOI arXiv |
Peter Deuflhard, Hans-Christian Hege | Raumtiefe in Malerei und Computergrafik | Räume - Bilder - Kulturen, pp. 33-46, Verena Lepper, Peter Deuflhard, Christoph Markschies (Eds.), Walter De Gruyter, 2015, ISBN: 978-3-11-035993-0 |
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Ralf Banisch, Natasa Djurdjevac Conrad, Christof Schütte | Reactive flows and unproductive cycles for random walks on complex networks | The European Physical Journal Special Topics, vol. 224, iss. 12 (2015) pp. 2369-2387, 2015 (preprint available as ZIB-Report 15-19) |
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Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Lin Zschiedrich, Sven Burger, Frank Schmidt | Reduced basis method for Maxwell's equations with resonance phenomena | ZIB-Report 15-37 (Proc. SPIE 9630, 96300R (2015)) |
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Sven Burger, Martin Hammerschmidt, Sven Herrmann, Jan Pomplun, Frank Schmidt | Reduced basis methods for optimization of nano-photonic devices | Proc. Int. Conf. Numerical Simulation of Optoelectronic Devices (NUSOD), p. 159, 2015 |
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Sebastian Götschel, Christoph von Tycowicz, Konrad Polthier, Martin Weiser | Reducing Memory Requirements in Scientific Computing and Optimal Control | Multiple Shooting and Time Domain Decomposition Methods, T. Carraro, M. Geiger, S. Koerkel, R. Rannacher (Eds.), pp. 263-287, 2015 |
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Räume - Bilder - Kulturen | Verena Lepper, Peter Deuflhard, Christoph Markschies (Eds.), De Gruyter, 2015, ISBN: 978-3-11-035993-0 |
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Emil Agcos, Bernd Bodermann, Sven Burger, Gaoliang Dai, Johannes Endres, Poul-Erik Hansen, Lars Nielson, Morten Madsen, Sebastian Heidenreich, Michael Krumrey, Bernd Loechel, Jürgen Probst, Frank Scholze, Victor Soltwisch, Matthias Wurm | Scatterometry reference standards to improve tool matching and traceability in lithographical nanomanufacturing | Proc. SPIE, p. 955610, Vol.9556, 2015 |
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Klaus Jäger, Carlo Barth, Martin Hammerschmidt, Sven Herrmann, Sven Burger, Frank Schmidt, Christiane Becker | Sinusoidal Nanotextures for Coupling Light into c-Si Thin-Film Solar Cells | Light, Energy and the Environement 2015, p. PTu4B.3, OSA Technical Digest, 2015 |
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Ivan Kryven, Susanna Röblitz, Christof Schütte | Solution of the chemical master equation by radial basis functions approximation with interface tracking | BMC Systems Biology, 9(67), pp. 1-12, 2015 |
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Patrick Gelß, Sebastian Matera, Christof Schütte | Solving the master equation without kinetic Monte Carlo: tensor train approximations for a CO oxidation model | ZIB-Report 15-41 |
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Stefan Bojarovski, Hans-Christian Hege, Han Cheng Lie, Marcus Weber | Topological analysis and visualization of scalar functions characterizing conformational transitions of molecules on multiple time-scales | Shape Up 2015 - Exercises in Materials Geometry and Topology, 14-18 Sept. 2015, Berlin, Germany, 2015 |
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Kevin McPeak, Christian D. van Engers, Sarah Bianchi, Aurelio Rossinelli, Lisa Poulikakos, Laetitia Bernard, Sven Herrmann, David K. Kim, Sven Burger, Mark Blome, Sriharsha V. Jayanti, David Norris | Ultraviolet Plasmonic Chirality from Colloidal Aluminum Nanoparticles Exhibiting Charge-Selective Protein Detection | Adv. Mater., Vol.27, p. 6244, 2015 |
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Jakob Schneck | Zielorientierte Fehlerschätzer für die Topologieoptimierung | Master's thesis, Technische Universität Berlin, Martin Weiser (Advisor), 2015 |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Sven Herrmann, Frank Schmidt | hp-finite element method for simulating light scattering from complex 3D structures | Proc. SPIE, p. 94240Z, Vol.9424, 2015 |
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2014 |
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Christiane Becker, Philippe Wyss, David Eisenhauer, Jürgen Probst, Veit Preidel, Martin Hammerschmidt, Sven Burger | 5 x 5 cm2 silicon photonic crystal slabs on glass and plastic foil exhibiting broadband absorption and high-intensity near-fields | Sci. Rep., Vol.4, p. 5886, 2014 |
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Dorian Krause, Konstantin Fackeldey, Rolf Krause | A Parallel Multiscale Simulation Toolbox for Coupling Molecular Dynamics and Finite Elements | Singular Phenomena and Scaling in Mathematical Models, pp. 327-346, 2014 (preprint available as ZIB-Report 13-50) |
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Daniel Lockau, Martin Hammerschmidt, Jan Haschke, Mark Blome, Florian Ruske, Frank Schmidt, Bernd Rech | A comparison of scattering and non-scattering anti-reflection designs for back contacted polycrystalline thin film silicon solar cells in superstrate configuration | Proc. SPIE, p. 914006, Vol.9140, Photonics for Solar Energy Systems, 2014 |
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Philipp Gutsche, Thomas Judd, Frank Schmidt | A convergence study of different Rigorous Coupled Wave Analysis (RCWA) approaches to time-harmonic electromagnetic scattering problems with applications to nanooptical structures | Verhandlungen der Deutschen Physikalischen Gesellschaft (DPG-Frühjahrstagung Berlin 2014), 2014 |
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Claudia Stötzel, Mochamad Apri, Susanna Röblitz | A reduced ODE model of the bovine estrous cycle | ZIB-Report 14-33 |
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Martin Hammerschmidt, Jan Pomplun, Sven Burger, Frank Schmidt | Adaptive sampling strategies for effcient parameter scans in nano-photonic device simulations | Proc. SPIE, p. 89801O, Vol.8980, 2014 (preprint available as ZIB-Report 14-20) |
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Manuel Gschrey, Marc Seifried, Luzy Krüger, Ronny Schmidt, Jan-Hindrick Schulze, Tobias Heindel, Sven Burger, Sven Rodt, Frank Schmidt, Andre Strittmatter, Stephan Reitzenstein | Advanced Quantum Light Sources: Modelling and Realization by Deterministic Nanofabrication Technologies | Integrated Photonics Research, Silicon and Nanophotonics, p. IW1A.3, Vol.IPRSN, 2014 |
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Alexander Bockmayr, Heike Siebert, Susanna Röblitz, Christof Schütte, Peter Deuflhard | Advanced mathematical modeling in systems biology | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 29-44, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutela, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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Daniel Lockau, Tobias Sontheimer, Veit Preidel, Florian Ruske, Martin Hammerschmidt, Christiane Becker, Frank Schmidt, Bernd Rech | Advanced microhole arrays for light trapping in thin film silicon solar cells | Solar Energy Materials and Solar Cells, Vol.125, pp. 298-304, 2014 |
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Lars Lubkoll, Anton Schiela, Martin Weiser | An optimal control problem in polyconvex hyperelasticity | SIAM J. Control Opt., 52(3), pp. 1403-1422, 2014 (preprint available as ZIB-Report 12-08) |
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Wei Zhang, Han Wang, Carsten Hartmann, Marcus Weber, Christof Schütte | Applications of the cross-entropy method to importance sampling and optimal control of diffusions | Siam Journal on Scientific Computing, 36(6), pp. A2654-A2672, 2014 (preprint available as ZIB-Report 14-10) |
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Mark Blome, Kevin McPeak, Sven Burger, Frank Schmidt, David Norris | Back-reflector design in thin-film silicon solar cells by rigorous 3D light propagation modeling | COMPEL: Int. J. Comput. Mathem. Electr. Electron. Eng., 33(4), pp. 1282-1295, 2014 |
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Marthe Solleder | Bewertung von Transformationsprodukten im Wasserkreislauf durch Computersimulationen | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2014 |
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Manuel Gschrey, Marc Seifried, Luzy Krüger, Ronny Schmidt, Jan-Hindrick Schulze, Tobias Heindel, Sven Burger, Sven Rodt, Frank Schmidt, Andre Strittmatter, Stephan Reitzenstein | Boosting the photon-extraction efficiency of nanophotonic structures by deterministic microlenses | CLEO: 2014, p. FF2K.2, 2014 |
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Han Wang, Christof Schütte | Building Markov State Models for Periodically Driven Non-Equilibrium Systems | ZIB-Report 14-46 |
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Animesh Agarwal, Han Wang, Christof Schütte, Luigi Delle Site | Chemical potential of liquids and mixtures via Adaptive Resolution Simulation | The Journal of Chemical Physics, Vol.141, p. 034102, 2014 (preprint available as ZIB-Report 14-25) |
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Kevin McPeak, Christian D. van Engers, Mark Blome, Jong Hyuk Park, Sven Burger, Miguel A. Gosalvez, Ava Faridi, Yasmina Ries, Ayaskanta Sahu, David Norris | Complex Chiral Colloids and Surfaces via High-Index Off-Cut Silicon | Nano Lett., 14(5), pp. 2934-2940, 2014 |
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Marcus Weber, Konstantin Fackeldey | Computing the Minimal Rebinding Effect Included in a Given Kinetics | Multiscale Model. Simul., 12(1), pp. 318-334, 2014 (preprint available as ZIB-Report 13-12) |
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Philipp Gutsche | Convergence Study of the Fourier Modal Method for Nano-optical Scattering Problems in Comparison with the Finite Element Method | Master's thesis, Eberhard Karls Universität Tübingen, Thomas Judd, Frank Schmidt (Advisors), 2014 |
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Ralf Banisch, Natasa Djurdjevac Conrad | Cycle-flow-based module detection in directed recurrence networks | EPL (Europhysics Letters), 108(6), 2014 |
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Ralf Frech | Das Konzept der Flussdichte und sein Bezug zur Bohmschen Mechanik | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2014 |
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Christof Schütte, Peter Deuflhard, Frank Noé, Marcus Weber | Design of functional molecules | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 49-65, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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Victor Soltwisch, Jan Wernecke, Anton Haase, Jürgen Probst, Max Schoengen, Frank Scholze, Jan Pomplun, Sven Burger | Determination of line profile on nanostructured surfaces using EUV and x-ray scattering | Proc. SPIE, p. 92351D, Vol.9235, 2014 |
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Frank Scholze, Bernd Bodermann, Sven Burger, Johannes Endres, Anton Haase, Michael Krumrey, Christian Laubis, Victor Soltwisch, Albrecht Ullrich, Jan Wernecke | Determination of line profiles on photomasks using DUV, EUV and X-ray scattering | Proc. SPIE, p. 92310M, Vol.9231, 2014 |
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Samuel Wiesendanger, Thomas Bischoff, Vladislav Jovanov, Dietmar Knipp, Sven Burger, Falk Lederer, Carsten Rockstuhl | Effects of film growth modes on light trapping in silicon thin film solar cells | Appl. Phys. Lett., 104(23), p. 231103, 2014 |
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Claudia Stötzel, Rainald Ehrig, H. Marike T. Boer, Julia Plöntzke, Susanna Röblitz | Exploration of different wave patterns in a model of the bovine estrous cycle by Fourier analysis | BIOMAT - Proceedings of the 14th International Symposium on Mathematical and Computational Biology, Bedlewo, Poland, 2014 (preprint available as ZIB-Report 16-02) |
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Han Wang, Christof Schütte, Giovanni Ciccotti, Luigi Delle Site | Exploring the conformational dynamics of alanine dipeptide in solution subjected to an external electric field: A nonequilibrium molecular dynamics simulation | Journal of Chemical Theory and Computation, 10(4), pp. 1376-1386, 2014 |
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Han Wang, Christof Schütte, Giovanni Ciccotti, Max von Kleist | Exploring the conformational dynamics of alanine dipeptide in solution subjected to an external electric field: A nonequilibrium molecular dynamics simulation | Journal of Chemical Theory and Computation, 10(4), pp. 1376-1386, 2014 |
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Christoph Menzel, Erik Hebestreit, Rasoul Alaee, Mohammad Albooyeh, Stefan Mühlig, Sven Burger, Carsten Rockstuhl, Constantin Simovski, Sergei Tretyakov, Falk Lederer, Thomas Pertsch | Extreme Coupling: a route towards local magnetic metamaterials | Phys. Rev. B, Vol.89, p. 155125, 2014 |
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Kirankumar Hiremath, Lin Zschiedrich, Sven Burger, Frank Schmidt | Finite elements based numerical solution of nonlocal hydrodynamic Drude model of nano-plasmonic scatterers | 12th International Conference on Fiber Optics and Photonics, p. M3D.4, OSA Technical Digest, 2014 |
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Marcus Weber, Christian Zoschke, Amir Sedighi, Emanuel Fleige, Rainer Haag, Monika Schäfer-Korting | Free Energy Simulations of Drug loading for Core-Multishell Nanotransporters | J Nanomed Nanotechnol, 5(5), p. 234, 2014 |
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Jacek Tyminski, Jan Pomplun, Stephen P. Renwick | Impact of topographic mask models on scanner matching solutions | Proc. SPIE: Optical Microlithography XXVII, p. 905218, Vol.9052, 2014 |
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Matthias Günther | Implementation and verification of methods for the validation of knee joint kinematics | Master's thesis, Freie Universität Berlin, Susanna Röblitz (Advisor), 2014 |
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Simon Kirner, Martin Hammerschmidt, Christoph Schwanke, Daniel Lockau, Sonya Calnan, Tim Frijnts, Sebastian Neubert, Andreas Schöpke, Frank Schmidt, Jens-Hendrik Zollondz, Andreas Heidelberg, Bernd Stannowski, Bernd Rech, Rutger Schlatmann | Implications of TCO Topography on Intermediate Reflector Design for a-Si/μc-Si Tandem Solar Cells — Experiments and Rigorous Optical Simulations | IEEE Journal of Photovoltaics, 4(1), pp. 10-15, 2014 |
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Benjamin Wohlfeil, Christos Stamatiadis, Matthias Jäger, Lars Zimmermann, Sven Burger, Klaus Petermann | Integrated optical fiber grating coupler on SOI for the excitation of several higher order fiber modes | Optical Communication (ECOC), 2014 European Conference on, pp. 1-3, 2014 |
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Karsten Andrae, Stefan Merkel, Vedat Durmaz, Konstantin Fackeldey, Robert Köppen, Marcus Weber, Matthias Koch | Investigation of the Ergopeptide Epimerization Process | Computation, 2(3), pp. 102-111, 2014 |
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Peter Deuflhard, Christof Schütte | Life Sciences | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 1-5, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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Konstantin Fackeldey, Alexander Bujotzek | Local Quantum-Like Updates in Classical Molecular Simulation Realized Within an Uncoupling-Coupling Approach | Progress in Industrial Mathematics at ECMI 2012, pp. 309-313, Vol.19, Mathematics in Industry, 2014 |
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Marcus Weber, Konstantin Fackeldey | Local Refinements in Classical Molecular Dynamics Simulations | J. Phys. Conf. Ser., Vol.490, p. 012016, 2014 |
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Sebastian Götschel, Chamakuri Nagaiah, Karl Kunisch, Martin Weiser | Lossy Compression in Optimal Control of Cardiac Defibrillation | J. Sci. Comput., 60(1), pp. 35-59, 2014 (preprint available as ZIB-Report 13-26) |
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MATHEON - Mathematics for Key Technologies | Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014, ISBN: 978-3-03719-137-8 |
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Stefanie Winkelmann, Christof Schütte, Max von Kleist | Markov Control Processes with Rare State Observation: Theory and Application to Treatment Scheduling in HIV-1 | Communications in Mathematical Sciences, 12(5), pp. 859-877, 2014 (preprint available as ZIB-Report 13-34) |
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Marco Sarich, Christof Schütte | Markov Model Theory | An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation, Vol.797, pp. 23-44, Gregory R. Bowman, Vijay S. Pande, Frank Noé (Eds.), Springer, 2014 |
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Peter Deuflhard, Ralf Kornhuber, Oliver Sander, Anton Schiela, Martin Weiser | Mathematics cures virtual patients | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 7-25, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Christof Schütte, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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Peter Deuflhard, Marcus Weber | Mathematics without pain | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 26-28, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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Jane Knöchel | Mathematische Modellierung metabolischer Einflussfaktoren auf den Milchkuhzyklus | Master's thesis, Humboldt-Universität zu Berlin, Susanna Röblitz, Caren Tischendorf (Advisors), 2014 |
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Pooja Gupta, Carola Krause, Paul Rikeit, Susanna Röblitz, Petra Knaus, Christof Schütte | Modeling of the BMP mediated co-regulation of the Smad and Non-Smad pathways in the context of cell density | 10th International BMP conference, 2014, Berlin, Germany, 2014 |
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Marco Sarich, Natasa Djurdjevac Conrad, Sharon Bruckner, Tim Conrad, Christof Schütte | Modularity revisited: A novel dynamics-based concept for decomposing complex networks | Journal of Computational Dynamics, 1(1), pp. 191-212, 2014 |
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Ralf Banisch, Christof Schütte, Natasa Djurdjevac Conrad | Module Detection in Directed Real-World Networks | ZIB-Report 14-13 |
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Molecular Dynamics Simulation | Giovanni Ciccotti, Mauro Ferrario, Christof Schütte (Eds.), Multidisciplinary Digital Publishing Institute (MDPI), 2014 |
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Martina Schmid, Phillip Manley | Nano- and microlenses as concepts for enhanced performance of solar cells | J. Photon. Energy, Vol.5, p. 057003, 2014 |
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Shalva Amiranashvili, Uwe Bandelow, Mark Blome, Sven Burger, Frank Schmidt, Kersten Schmidt, Lin Zschiedrich | Nanophotonics and nonlinear fiber optics | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 257-275, Peter Deuflhard, et al. (Eds.), European Mathematical Society, 2014 |
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Andrei Lavrinenko, Jesper Laegsgaard, Niels Gregersen, Frank Schmidt, Thomas Soendergaard | Numerical Methods in Photonics | James C. Wyant (Ed.), CRC Press, 2014, ISBN: 9781466563889 |
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Benjamin Wohlfeil, Sven Burger, Christos Stamatiadis, Jan Pomplun, Frank Schmidt, Lars Zimmermann, Klaus Petermann | Numerical Simulation of Grating Couplers for Mode Multiplexed Systems | Proc. SPIE, p. 89880K, Vol.8988, 2014 |
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DOI arXiv |
Claudia Stötzel | Numerical and Discrete Modeling of Reproductive Endocrinological Networks | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2014 |
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Samuel Wiesendanger, Thomas Bischoff, Vladislav Jovanov, Dietmar Knipp, Sven Burger, Falk Lederer, Carsten Rockstuhl | Numerical investigations on the effects of film growth modes on light trapping in silicon thin film solar cells | Light, Energy and the Environment, p. PF4C.4, 2014 |
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Martin Hammerschmidt, Daniel Lockau, Lin Zschiedrich, Frank Schmidt | Optical modelling of incoherent substrate light-trapping in silicon thin film multi-junction solar cells with finite elements and domain decomposition | Proc. SPIE: Physics and Simulation of Optoelectronic Devices XXII, p. 898007, Vol.8980, 2014 (preprint available as ZIB-Report 14-21) |
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Daniel Lockau, Martin Hammerschmidt, Mark Blome, Frank Schmidt | Optics of thin film solar cells | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 278-279, Peter Deuflhard, et al. (Eds.), European Mathematical Society, 2014 |
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Dany Pascal Moualeu-Ngangue, Samuel Bowong, Jürgen Kurths | Parameter Estimation of a Tuberculosis Model in a Patchy Environment: Case of Cameroon | BIOMAT - Proceedings of the 12th International Symposium on Mathematical and Computational Biology, Toronto, 2013, 2014 |
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Toni Mancini, Ivano Salvo, Federico Mari, Igor Melatti, Annalisa Massini, Stefano Sinisi, Enrico Tronci, Francesco Davi, Thomas Dierkes, Rainald Ehrig, Susanna Röblitz, Brigitte Leeners, Tillmann H. C. Krüger, Marcel Egli, Fabian Ille | Patient-Specific Models from Inter-Patient Biological Models and Clinical Records | Proceedings of the 14th Conference on Formal Methods in Computer-Aided Design (FMCAD 2014), pp. 207-214, 2014 |
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Martina Schmid, Patrick Andrae, Phillip Manley | Plasmonic and photonic scattering and near fields of nanoparticles | Nanoscale Research Letters, Vol.9, p. 50, 2014 |
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Olga Scharkoi, Susanne Esslinger, Roland Becker, Marcus Weber, Irene Nehls | Predicting sites of cytochrome P450-mediated hydroxylation applied to CYP3A4 and hexabromocyclododecane | Molecular Simulation, 2014 |
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Iliusi Vega, Christof Schütte, Tim Conrad | SAIMeR: Self-adapted method for the identification of metastable states in real-world time series | ZIB-Report 14-16 |
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Christof Schütte, Tim Conrad | Showcase 3: Information-based medicine | MATHEON-Mathematics for Key Technologies, Vol.1, pp. 66-67, Peter Deuflhard, Martin Grötschel, Dietmar Hömberg, Ulrich Horst, Jürg Kramer, Volker Mehrmann, Konrad Polthier, Frank Schmidt, Martin Skutella, Jürgen Sprekels (Eds.), European Mathematical Society, 2014 |
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Lin Zschiedrich, Therese Blome, Horst Greiner | Simulation of advanced OLED light extraction structures with novel FEM methods | Organic Photonics VI, p. 91370O, Vol.9137, Proc. SPIE, 2014 |
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Vitaly Shchukin, Nikolay Ledentsov, Jr., Jörg-R. Kropp, Gunther Steinle, Nikolay Ledentsov, Jr., Sven Burger, Frank Schmidt | Single-Mode Vertical Cavity Surface Emitting Laser via Oxide-Aperture-Engineering of Leakage of High Order Transverse Modes | IEEE J. Quant. Electron., 50(12), pp. 990-995, 2014 |
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Johannes Kaschke, Mark Blome, Sven Burger, Martin Wegener | Tapered N-helical metamaterials with three-fold rotational symmetry as improved circular polarizers | Opt. Expr., 22(17), pp. 19936-19946, 2014 |
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Christoph Menzel, Erik Hebestreit, Stefan Mühlig, Carsten Rockstuhl, Sven Burger, Falk Lederer, Thomas Pertsch | The spectral shift between near- and far-field resonances of optical nano-antennas | Opt. Expr., 22(8), pp. 9971-9982, 2014 |
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Philippe Moewis, Heide Boeth, Markus O. Heller, Caroline Yntema, Tobias Jung, Ralf Doyscher, Rainald Ehrig, Yanlin Zhong, William R. Taylor | Towards understanding knee joint laxity: Errors in non-invasive assessment of joint rotation can be corrected | Medical Engineering and Physics, 36(7), pp. 889-895, 2014 |
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Charlotte Tumescheit | Using Birkhoff-von Neumann und Sinkhorn Algorithm to Find Dominating Cycles | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2014 |
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Alexander Bujotzek, Ole Schütt, Adam Nielsen, Konstantin Fackeldey, Marcus Weber | ZIBgridfree: Efficient Conformational Analysis by Partition-of-Unity Coupling | Journal of Mathematical Chemistry, 52(3), pp. 781-804, 2014 (preprint available as ZIB-Report 13-58) |
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Julia Skibina, Martin Bock, Dorit Fischer, Rüdiger Grunwald, Günter Steinmeyer, Reiner Wedell, Mario Bretschneider, Sven Burger, Valentin Beloglazov | 10-fs fiber based pulse delivery | Conference on Lasers, Applications, and Technologies (LAT), p. LWF5, 2013 |
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Dany Pascal Moualeu-Ngangue | A Mathematical Tuberculosis Model in Cameroon | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2013 |
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Han Cheng Lie, Konstantin Fackeldey, Marcus Weber | A Square Root Approximation of Transition Rates for a Markov State Model | SIAM. J. Matrix Anal. Appl., 34(2), pp. 738-756, 2013 (preprint available as ZIB-Report 13-43) |
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Vedat Durmaz, Sebastian Schmidt, Peggy Sabri, Christian Piechotta, Marcus Weber | A hands-off linear interaction energy approach to binding mode and affinity estimation of estrogens | Journal of Chemical Information and Modeling, 53(10), pp. 2681-2688, 2013 |
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Susanna Röblitz, Claudia Stötzel, Peter Deuflhard, Hannah M. Jones, David-Olivier Azulay, Piet van der Graaf, Steven Martin | A mathematical model of the human menstrual cycle for the administration of GnRH analogues | Journal of Theoretical Biology, Vol.321, pp. 8-27, 2013 (preprint available as ZIB-Report 11-16) |
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Marta Enciso, Christof Schütte, Luigi Delle Site | A pH-dependent coarse-grained model for peptides | Soft Matter, 9(26), pp. 6118-6127, 2013 |
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Pooja Gupta, Norbert Reinsch, Andreas Spötter, Tim Conrad, Kaspar Bienefeld | Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera) | BMC Genetics, 14(36), 2013 |
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Marcus Weber | Adaptive Spectral Clustering in Molecular Simulation. In: Studies in Classification, Data Analysis, and Knowledge Organization | XIV: Classification and Data Mining, A. Giusti, G. Ritter, M. Vichi (Eds.), Springer Series, pp. 147-157, 2013 |
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Fiete Haack, Konstantin Fackeldey, Susanna Röblitz, Olga Scharkoi, Marcus Weber, Burkhard Schmidt | Adaptive spectral clustering with application to tripeptide conformation analysis | The Journal of Chemical Physics, Vol.139, pp. 110-194, 2013 |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Mark Blome, Frank Schmidt | Advanced finite-element methods for design and analysis of nano-optical structures: Applications | Proc. SPIE, Vol.8642, p. 864205, 2013 |
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Veit Preidel, Daniel Lockau, Tobias Sontheimer, Franziska Back, Eveline Rudigier-Voigt, Bernd Rech, Christiane Becker | Analysis of absorption enhancement in tailor-made periodic polycrystalline silicon microarrays | physica status solidi (RRL)-Rapid Research Letters, 7(12), pp. 1045-1049, 2013 |
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Florian Paulus, Maximilian Weiss, Dirk Steinhilber, Anatoly Nikitin, Christof Schütte, Rainer Haag | Anionic Ring-Opening Polymerization Simulations for Hyperbranched Polyglycerols with Defined Molecular Weights | Macromolecules, 46(21), pp. 8458-8466, 2013 |
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Heide Boeth, Georg Duda, Markus O. Heller, Rainald Ehrig, Ralf Doyscher, Tobias Jung, Philippe Moewis, Sven Scheffler, William R. Taylor | Anterior cruciate ligament-deficient patients with passive knee joint laxity have a decreased range of anterior-posterior motion during active movements | The American Journal of Sports Medicine, 41(5), pp. 1051-7, 2013 |
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Carsten Hartmann, Ralf Banisch, Marco Sarich, Thomas Badowski, Christof Schütte | Characterization of Rare Events in Molecular Dynamics | Entropy (Special Issue), 16(1), pp. 350-376, 2013 (preprint available as ZIB-Report 13-51) |
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Remi Toudic | Confjump: A method for biomolecular sampling | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2013 |
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Olga Scharkoi, Konstantin Fackeldey, Igor Merkulow, Karsten Andrae, Marcus Weber, Irene Nehls | Conformational Analysis of Alternariol on the Quantum Level | J. Mol. Model., 19(6), pp. 2567-2572, 2013 |
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Tobias Sontheimer, Veit Preidel, Daniel Lockau, Franziska Back, Eveline Rudigier-Voigt, Bernd Löchel, Alexei Erko, Frank Schmidt, Alexander Schnegg, Klaus Lips, Christiane Becker, Bernd Rech | Correlation between structural and opto-electronic characteristics of crystalline Si microhole arrays for photonic light management | Journal of Applied Physics, 114(17), p. 173513, 2013 |
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Günter Kewes, Andreas W. Schell, Rico Henze, Rolf S. Schonfeld, Sven Burger, Kurt Busch, Oliver Benson | Design and numerical optimization of an easy-to-fabricate photon-to-plasmon coupler for quantum plasmonics | Applied Physics Letters, Vol.102, p. 051104, 2013 |
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Cristina Arellano, Sergei F. Mingaleev, Igor Koltchanov, Andre Richter, Jan Pomplun, Sven Burger, Frank Schmidt | Efficient design of photonic integrated circuits (PICs) by combining device- and circuit- level simulation tools | Proc. SPIE, Vol.8627, p. 862711, 2013 |
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Martin Hammerschmidt, Daniel Lockau, Sven Burger, Frank Schmidt, Christoph Schwanke, Simon Kirner, Sonya Calnan, Bernd Stannowski, Bernd Rech | FEM-based optical modeling of silicon thin-film tandem solar cells with randomly textured interfaces in 3D | Proc. SPIE, Vol.8620, p. 86201H, 2013 |
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Sebastian Götschel, Martin Weiser, Christiane Maierhofer, Regina Richter, Mathias Röllig | Fast Defect Shape Reconstruction Based on the Travel Time in Pulse Thermography | Nondestructive Testing of Materials and Structures, Vol.6, pp. 83-89, 2013 |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt, Bernd Bodermann | Fast simulation method for parameter reconstruction in optical metrology | Proc. SPIE, Vol.8681, p. 868119, 2013 |
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Christoph Stein, Marcus Weber, Christian Zöllner, Olga Scharkoi | Fentanyl derivatives as pH-dependent opioid receptor agonists | European Patent Application, Bulletin 2013/08, 2013 |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt | Finite-element based electromagnetic field simulations: Benchmark results for isolated structures | Proc. SPIE, p. 88801Z, Vol.8880, 2013 |
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Andreas Günther, Hans Lamecker, Martin Weiser | Flexible Shape Matching with Finite Element Based LDDMM | International Journal of Computer Vision, 105(2), pp. 128-143, 2013 (preprint available as ZIB-Report 11-22) |
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Susanna Röblitz, Marcus Weber | Fuzzy spectral clustering by PCCA+: application to Markov state models and data classification | Advances in Data Analysis and Classification, 7(2), pp. 147-179, 2013 |
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Han Wang, Carsten Hartmann, Christof Schütte, Luigi Delle Site | Grand-canonical-like molecular-dynamics simulations by using an adaptive-resolution technique | Phys. Rev. X, Vol.3, p. 011018, 2013 |
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Barbara Rath, Kaveh Yousef, D. Katzenstein, R. Shafer, Christof Schütte, Max von Kleist, T. Merigan | HIV-1 Evolution in Response to Triple Reverse Transcriptase Inhibitor Induced Selective Pressure in vitro | PLoS ONE, 8(4), 2013 |
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Felix Lehmann | Inexaktheit in Newton-Lagrange-Verfahren für Optimierungsprobleme mit Elliptischen PDGL-Nebenbedingungen | Master's thesis, Freie Universität Berlin, Martin Weiser (Advisor), 2013 (preprint available as ZIB-Report 13-37) |
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Stephan Aiche | Inferring Proteolytic Processes from Mass Spectrometry Time Series Data | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013 |
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Pooja Gupta | Integrating high-density marker information into the genetic evaluation of the honey bee | Doctoral thesis, Freie Universität Berlin, Christof Schütte, Kaspar Bienefeld (Advisors), 2013 |
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Pooja Gupta | Integrating high-density marker information into the genetic evaluation of the honey bee | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013 |
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Poul-Erik Hansen, Sven Burger | Investigation of microstructured fiber geometries by scatterometry | Proc. SPIE, Vol.8789, p. 87890R, 2013 |
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Rahul Tyagi, Shashwat Malhotra, Andreas F. Thünemann, Amir Sedighi, Marcus Weber, Andreas Schäfer, Rainer Haag | Investigations of Host-Guest Interactions with Shape-persistent Nonionic Dendritic Micelles | J. Phys. Chem. C, 117(23), pp. 12307-12317, 2013 |
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Daniel Pommer | Konditionsverbesserung von Markov-Modellen | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2013 |
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Phillip Manley, Frank Schmidt, Martina Schmid | Light extraction from plasmonic particles with dielectric shells and overcoatings | Renewable Energy and the Environment, p. PW3B.7, 2013 |
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Han Wang, Carsten Hartmann, Christof Schütte | Linear response theory and optimal control for a molecular system under nonequilibrium conditions | Molecular Physics, Vol.111, pp. 3555-3564, 2013 (preprint available as ZIB-Report 13-33) |
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Stefanie Winkelmann, Christof Schütte, Max von Kleist | Markov Control Processes with Rare State Observation: Sensitivity Analysis with Respect to Optimal Treatment Strategies against HIV-1 | International Journal of Biomathematics and Biostatistics, 2(1), 2013 |
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Stefanie Winkelmann | Markov Decision Processes with Information Costs | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013 |
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Marco Sarich, Ralf Banisch, Carsten Hartmann, Christof Schütte | Markov State Models for Rare Events in Molecular Dynamics | Entropy (Special Issue), 16(1), pp. 258-286, 2013 (preprint available as ZIB-Report 13-52) |
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Pooja Gupta, Susanna Röblitz, Carola Krause, Petra Knaus, Christof Schütte | Mathematical modeling of the Smad and Non-Smad BMP signaling pathways in context of cell density | Computational Models in biology and medicine, 2013, Dresden, Germany, 2013 |
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Karsten Andrae, Vedat Durmaz, Konstantin Fackeldey, Olga Scharkoi, Marcus Weber | Medizin aus dem Computer | Der Anaesthesist, 62(7), pp. 561-557, 2013 |
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Christof Schütte, Marco Sarich | Metastability and Markov State Models in Molecular Dynamics: Modeling, Analysis, Algorithmic Approaches | American Mathematical Society, 2013 |
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Christoph Stein, Marcus Weber, Olga Scharkoi, Peter Deuflhard | Method and system for identifying compounds that bind and preferably activate a target opioid receptor in a pH-dependent manner | European Patent Application, Bulletin 2013/28, 2013 |
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B. A. Nikitin, Michael Wulkow, Christof Schütte | Modeling of Free Radical Styrene/Divinylbenzene Copolymerization with the Numerical Fractionation Technique | Macromolecular Theory and Simulation, 22(9), pp. 475-489, 2013 |
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Julia Plöntzke, Mascha Berg, Amiya Olany, Sabine Leonhard-Marek, Kerstin-Elisabeth Müller, Susanna Röblitz | Modeling potassium balance in dairy cows | ZIB-Report 13-09 |
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Alexander Bujotzek | Molecular Simulation of Multivalent Ligand-Receptor Systems | Doctoral thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2013 |
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Daniel Lockau, Tobias Sontheimer, Christiane Becker, Eveline Rudigier-Voigt, Frank Schmidt, Bernd Rech | Nanophotonic light trapping in 3-dimensional thin-film silicon architectures | Opt. Express, Vol.21, p. A42, 2013 |
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Christiane Becker, Jolly Xavier, Veit Preidel, Philippe Wyss, Tobias Sontheimer, Bernd Rech, Jürgen Probst, Christoph Hülsen, Bernd Löchel, Alexei Erko, Sven Burger, Frank Schmidt, Franziska Back, Eveline Rudigier-Voigt | Nanophotonic light trapping in polycrystalline silicon thin-film solar cells using periodically nanoimprint-structured glass substrates | Proc. SPIE, p. 88240D, Vol.8824, 2013 |
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Martin Bock, Julia Skibina, Dorit Fischer, Mario Bretschneider, Reiner Wedell, Rüdiger Grunwald, Sven Burger, Valentin Beloglazov, Günter Steinmeyer | Nanostructured fibers for sub-10 fs optical pulse delivery | Laser & Photonics Reviews, Vol.7, pp. 566-570, 2013 |
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Min Shan, Kathryn E. Carlson, Alexander Bujotzek, Anja Wellner, Ronald Gust, Marcus Weber, John A. Katzenellenbogen, Rainer Haag | Nonsteroidal Bivalent Estrogen Ligands - An Application of the Bivalent Concept to the Estrogen Receptor | ACS Chem. Biol., 8(4), pp. 707-715, 2013 |
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Jo Andrea Brüggemann | Numerical Modelling of the human menstrual cycle applied to ovulation prediction | Master's thesis, Universität Trier, Susanna Röblitz (Advisor), 2013 |
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Lin Zschiedrich, Horst Greiner, Sven Burger, Frank Schmidt | Numerical analysis of nanostructures for enhanced light extraction from OLEDs | Proc. SPIE, Vol.8641, p. 86410B, 2013 |
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DOI arXiv |
Johannes Endres, Sven Burger, Matthias Wurm, Bernd Bodermann | Numerical investigations of the influence of different commonly applied approximations in scatterometry | Proc. SPIE, Vol.8789, p. 878904, 2013 |
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Adam Nielsen, Konstantin Fackeldey, Marcus Weber | On a Generalized Transfer Operator | ZIB-Report 13-74 |
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Martin Weiser | On goal-oriented adaptivity for elliptic optimal control problems | Opt. Meth. Softw., 28(13), pp. 969-992, 2013 (preprint available as ZIB-Report 09-08) |
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Daniel Lockau | Optical modeling of thin film silicon solar cells with random and periodic light management textures | Doctoral thesis, Technische Universität Berlin, Bernd Rech (Advisor), 2013 |
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Daniel Lockau, Tobias Sontheimer, Veit Preidel, Christiane Becker, Florian Ruske, Frank Schmidt, Bernd Rech | Optical properties and Limits of a Large-Area Periodic Nanophotonic Light Trapping Design for Polycrystalline Silicon Thin Film Solar Cells | MRS Proceedings, Vol.1493, pp. 59-64, 2013 |
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Thomas Dierkes, Susanna Röblitz, Moritz Wade, Peter Deuflhard | Parameter identification in large kinetic networks with BioPARKIN | CoRR - Computing Research Repository - arXiv.org, Vol.abs/1303.4928, 2013 |
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Christiane Becker, Daniel Amkreutz, Tobias Sontheimer, Veit Preidel, Daniel Lockau, Jan Haschke, Lisa Jogschies, Carola Klimm, Janis J. Merkel, Paul Plocica, Simon Steffens, Bernd Rech | Polycrystalline silicon thin-film solar cells: Status and perspectives | Solar Energy Materials and Solar Cells, Vol.119, pp. 112-123, 2013 |
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Sebastian Götschel, Christoph von Tycowicz, Konrad Polthier, Martin Weiser | Reducing Memory Requirements in Scientific Computing and Optimal Control | ZIB-Report 13-64 (submitted to "Multiple Shooting and Time Domain Decomposition Methods", Springer Series "Contributions in Mathematical and Computational Sciences") |
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Victor Soltwisch, Sven Burger, Frank Scholze | Scatterometry sensitivity analysis for conical diffraction versus in-plane diffraction geometry with respect to the side wall angle | Proc. SPIE, Vol.8789, p. 878905, 2013 |
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Bjorn Maes, Jiří Petráček, Sven Burger, Pavel Kwiecien, Jaroslav Luksch, Ivan Richter | Simulations of high-Q optical nanocavities with a gradual 1D bandgap | Opt. Express, Vol.21, pp. 6794-6806, 2013 |
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Jessica Schmiedel | Singulärwertzerlegung mit Zufallsalgorithmen | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2013 |
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Kaveh Yousef | Stress responses in Escherichia coli and HIV as model systems of adaptation to the environment | Doctoral thesis, Freie Universität Berlin, Christof Schütte (Advisor), 2013 |
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Jacek Tyminski, Jan Pomplun, Lin Zschiedrich, Donis Flagello, Tomiyuki Matsuyama | Topographic mask modeling with reduced basis finite element method | Proc. SPIE, Vol.8683, p. 86831C, 2013 |
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Christoph Menzel, Erik Hebestreit, Stefan Mühlig, Sven Burger, Carsten Rockstuhl, Falk Lederer, Thomas Pertsch | Towards homogeneous magnetic metamaterials - a comprehensive multipole analysis | Proc. META'13, Said Zouhdi, Hamid Al-Naimiy (Eds.), pp. 502-503, 2013, ISBN: 978-2-9545460-0-1 |
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Daniel Ruprecht, Achim Schädle, Frank Schmidt | Transparent boundary conditions based on the pole condition for time-dependent, two-dimensional problems | Numerical Methods for Partial Differential Equations, 29(4), pp. 1367-1390, 2013 |
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Marta Enciso, Christof Schütte, Luigi Delle Site | pH-dependent Response of Coiled Coils: A Coarse-Grained Molecular Simulation Study | Molecular Physics, 111(22-23), pp. 3363-3371, 2013 |
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2012 |
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Martin Bock, Julia Skibina, Dorit Fischer, Rüdiger Grunwald, Sven Burger, Valentin Beloglazov, Günter Steinmeyer | 10-fs pulse delivery through a fiber | CLEO, p. CTh3G.3, 2012 |
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A. Plattner, H. Maurer, J. Vorloeper, Mark Blome | 3-D electrical resistivity tomography using adaptive wavelet parameter grids | Geophysical Journal International, Vol.189, pp. 317-330, 2012 |
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Maria Rozova, Jan Pomplun, Lin Zschiedrich, Frank Schmidt, Sven Burger | 3D finite element simulation of optical modes in VCSELs | Proc. SPIE, p. 82550K, Vol.8255, 2012 |
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DOI arXiv |
Martin Hammerschmidt, Daniel Lockau, Sven Burger, Frank Schmidt, Christoph Schwanke, Simon Kirner, Sonya Calnan, Bernd Stannowski, Bernd Rech | 3D optical modeling of thin-film a-Si/mc-Si tandem solar cells with random textured interfaces using FEM | Renewable Energy and the Environment Optics and Photonics Congress, p. JM5A.15, 2012 |
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Konstantin Fackeldey, Martina Klimm, Marcus Weber | A Coarse Graining Method for the Dimension Reduction of the State Space of Biomolecules | Journal of Mathematical Chemistry, 5(9), pp. 2623-2635, 2012 |
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Han Cheng Lie | A Meshless Method for Conformational Analysis | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012 |
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Anton Schiela | A cubic regularization algorithm for nonconvex optimization in function space (in preparation) | ZIB-Report 12-16 |
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H. Marike T. Boer, Claudia Stötzel, Susanna Röblitz, Henri Woelders | A differential equation model to investigate the dynamics of the bovine estrous cycle | Advances in Systems Biology, pp. 597-606, 2012 |
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Konstantin Fackeldey, Alexander Bujotzek, Marcus Weber | A meshless discretization method for Markov state models applied to explicit water peptide folding simulations | Meshfree Methods for Partial Differential Equations VI, pp. 141-154, Vol.89, Lecture Notes in Computational Science and Engineering, 2012 |
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Corinna Klapproth | Adaptive numerical integration for dynamical contact problems | Doctoral thesis, Freie Universität Berlin, 2012 |
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Peter Deuflhard, Martin Weiser | Adaptive numerical solution of PDEs | de Gruyter: Berlin, 2012 |
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Claudia Stötzel, Julia Plöntzke, Wolfgang Heuwieser, Susanna Röblitz | Advances in modelling of the bovine estrous cycle: Synchronization with PGF2alpha | Theriogenology, Vol.78, pp. 1415-1428, 2012 (preprint available as ZIB-Report 11-17) |
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Akiko Kato, Sven Burger, Frank Scholze | Analytical modeling and 3D finite element simulation of line edge roughness in scatterometry | Appl. Optics, Vol.51, pp. 6457-6464, 2012 |
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DOI arXiv |
Mark Daniel Riesland | Anwendbarkeit von Thermostaten in der moleküldynamischen Simulation | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012 |
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H. Marike T. Boer, Mochamad Apri, Jaap Molenaar, Claudia Stötzel, Roel F. Veerkamp, Henri Woelders | Candidate mechanisms underlying atypical progesterone profiles as deduced from parameter perturbations in a mathematical model of the bovine estrous cycle | Journal of Dairy Science, 95(7), pp. 3837-3851, 2012 |
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Felix Schlosser, Mario Schoth, Sven Burger, Frank Schmidt, Andreas Knorr, Shaul Mukamel, Marten Richter | Coherent Nonlinear Spectroscopy with Spatiotemporally Controlled Fields | CLEO/QELS, p. QF3D.6, 2012 |
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Felix Schlosser, Mario Schoth, Kirankumar Hiremath, Sven Burger, Frank Schmidt, Andreas Knorr, Shaul Mukamel, Marten Richter | Combining nanooptical fields and coherent spectroscopy on systems with delocalized excitons | Proc. SPIE, p. 82601V, Vol.8260, 2012 |
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J.G. Ochoa, Michael Wulkow | DNA damages as a Depolymerization Process | International Journal of Modern Physics C, 23(03), pp. 1250018-1, 2012 |
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Sebastian Götschel, Martin Weiser, Christiane Maierhofer, Regina Richter | Data Enhancement for Active Thermography | E-book Proceedings, 11th International Conference on Quantitative Infrared Thermography, Naples, Gennaro Cardone (Ed.), 2012 (preprint available as ZIB-Report 12-20) |
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Benjamin Kettner | Detection of spurious modes in resonance mode computations | Doctoral thesis, Freie Universität Berlin, Frank Schmidt (Advisor), 2012 |
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Andreas Spötter, Pooja Gupta, Nürnberg, Norbert Reinsch, Kaspar Bienefeld | Development of a 44K SNP assay focussing on the analysis of a varroa-specific defence behaviour in honey bees (Apis mellifera carnica) | 12(2), pp. 323-332, 2012 |
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Stefan Kratzenstein, Evgenios I. Kornaropoulos, Rainald Ehrig, Markus O. Heller, Berry M. Pöpplau, William R. Taylor | Effective marker placement for functional identification of the centre of rotation at the hip | Gait & Posture, 36(3), pp. 482-486, 2012 |
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Lin Zschiedrich, Horst Greiner, Jan Pomplun, Martin Hammerschmidt, Sven Burger, Frank Schmidt | FEM simulations of light extraction from nanostructured organic light-emitting diodes | Renewable Energy and the Environment Optics and Photonics Congress, p. LT2B.5, 2012 |
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Sven Burger, Jan Pomplun, Frank Schmidt | Finite Element Methods for Computational Nano-optics | Encyclopedia of Nanotechnology, B. Bhushan (Ed.), Springer Netherlands, pp. 837-843, 2012 |
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Jacek Tyminski, Raluca Popescu, Sven Burger, Jan Pomplun, Lin Zschiedrich, Tomoyuki Matsuyama, Tomoya Noda | Finite element models of lithographic mask topography | Proc. SPIE, W. Conley (Ed.), p. 83261B, Vol.8326, 2012 |
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Bernd Bodermann, Poul-Erik Hansen, Sven Burger, Mark-Alexander Henn, Hermann Gross, Markus Bär, Frank Scholze, Johannes Endres, Matthias Wurm | First steps towards a scatterometry reference standard | Proc. SPIE, p. 84660E, Vol.8466, 2012 |
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Burcu Tunga, Marcus Weber | Free Energy Calculation Using Mayer Cluster Expansion and Fluctuation Free Integration | ZIB-Report 12-35 |
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Hong-Dan Yan, Peter Lemmens, Johannes Ahrens, Martin Bröring, Sven Burger, Winfried Daum, Gerhard Lilienkamp, Sandra Korte, Aidin Lak, Meinhard Schilling | High-density array of Au nanowires coupled by plasmon modes | Acta Phys. Sin., 61(23), p. 237105, 2012 |
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Vedat Durmaz, Marcus Weber, Roland Becker | How to Simulate Affinities for Host-Guest Systems Lacking Binding Mode Information: application to the liquid chromatographic separation of hexabromocyclododecane stereoisomers | Journal of Molecular Modeling, Vol.18, pp. 2399-2408, 2012 |
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Stephan Aiche, Knut Reinert, Christof Schütte, Diana Hildebrand, Hartmut Schlüter, Tim Conrad | Inferring Proteolytic Processes from Mass Spectrometry Time Series Data Using Degradation Graphs | PLoS ONE, 7(7), p. e40656, 2012 |
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Christiane Becker, Daniel Lockau, Tobias Sontheimer, Peter Schubert-Bischoff, Eveline Rudigier-Voigt, Matthias Bockmeyer, Frank Schmidt, Bernd Rech | Large-area 2D periodic crystalline silicon nanodome arrays on nanoimprinted glass exhibiting photonic band structure effects | Nanotechnology, 23(13), p. 135302, 2012 |
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Mascha Berg | Laufzeitoptimierung der Robusten Perron Cluster Analyse (PCCA+) | Master's thesis, Freie Universität Berlin, Susanna Röblitz, Marcus Weber (Advisors), 2012 |
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Tobias Sontheimer, Eveline Rudigier-Voigt, Matthias Bockmeyer, Daniel Lockau, Carola Klimm, Christiane Becker, Bernd Rech | Light harvesting architectures for electron beam evaporated solid phase crystallized Si thin film solar cells | Journal of Non-Crystalline Solids, 358(17), pp. 2303-2307, 2012 |
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Viktoriia E. Babicheva, Sergey S. Vergeles, Petr E. Vorobev, Sven Burger | Localized surface plasmon modes in a system of two interacting metallic cylinders | J. Opt. Soc. Am. B, 29(6), pp. 1263-1269, 2012 |
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DOI arXiv |
Peter Deuflhard, Anton Schiela, Martin Weiser | Mathematical Cancer Therapy Planning in Deep Regional Hyperthermia | Acta Numerica, Vol.21, pp. 307-378, 2012 (preprint available as ZIB-Report 11-39) |
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Manon Bondouy, Susanna Röblitz | Mathematical modeling of follicular development in bovine estrous cycles | ZIB-Report 12-26 |
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Kristin Meisel | Mathematische Modellierung der Knochenremodellierung | Master's thesis, Hochschule Zittau/Görlitz, Susanna Röblitz (Advisor), 2012 (preprint available as ZIB-Report 13-41) |
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Peter Deuflhard, Stefan Zachow | Mathematische Therapie- und Operationsplanung | pp. 89-90, Berliner Wirtschaftsgespräche e.V.: Berlin, 2012 |
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William R. Taylor, Annika Fröhlich, Frank Buttgereit, Rainald Ehrig, Tom Witaschek, Georg Duda | Metacarpophalangeal joint stiffness is reduced in patients affected by rheumatoid arthritis after glucocorticoid medication | Proceedings of the ESM-2012, Aalborg, Uwe Kersting, Michael Morlock, Daniela Jirova-Enzmann, Kim Dremstrup (Eds.), p. 39, 2012 |
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Natasa Djurdjevac Conrad | Methods for analyzing complex networks using random walker | Doctoral thesis, Freie Universität Berlin, Christof Schütte, Wilhelm Huisinga (Advisors), 2012 |
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Konstantin Fackeldey | Multiscale Methods in Time and Space | Progress in Industrial Mathematics at ECMI 2010, pp. 619-626, Vol.17, Mathematics in Industry, 2012 |
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Carlo Fasting, Christoph A. Schalley, Marcus Weber, Oliver Seitz, Stefan Hecht, Beate Koksch, Jens Dernedde, Christina Graf, Ernst-Walter Knapp, Rainer Haag | Multivalency as a Chemical Organization and Action Principle | Angew. Chem. Int. Ed., 51(42), pp. 10472-10498, 2012 |
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Kirankumar Hiremath, Lin Zschiedrich, Frank Schmidt | Numerical solution of nonlocal hydrodynamic Drude model for arbitrary shaped nano-plasmonic structures using Nedelec finite elements | J. Comp. Phys., 231(17), pp. 5890-5896, 2012 |
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Robert Köppen, Juliane Riedel, Matthias Proske, Sarah Drzymala, Tatjana Rasenko, Vedat Durmaz, Marcus Weber, Matthias Koch | Photochemical trans-/cis-isomerization and quantification of zearalenone in edible oils | J. Agric. Food Chem., Vol.60, pp. 11733-11740, 2012 |
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Marcus Weber, Alexander Bujotzek, Rainer Haag | Quantifying the rebinding effect in multivalent chemical ligand-receptor systems | J. Chem. Phys., 137(5), p. 054111, 2012 |
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Natasa Djurdjevac Conrad, Stefanie Bruckner, Tim Conrad, Christof Schütte | Random Walks on Complex Modular Networks | Journal of Numerical Analysis, Industrial and Applied Mathematics, 6(1-2), pp. 29-50, 2012 |
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Marten Richter, Felix Schlosser, Mario Schoth, Sven Burger, Frank Schmidt, Andreas Knorr, Shaul Mukamel | Reconstruction of the wave functions of coupled nanoscopic emitters using a coherent optical technique | Phys. Rev. B, Vol.86, p. 085308, 2012 |
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DOI arXiv |
Pooja Gupta, Tim Conrad, Andreas Spötter, Norbert Reinsch, Kaspar Bienefeld | Simulating a base population in honey bee for molecular genetic studies | Genetics Selection Evolution, 2012 |
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Jiri Petracek, Bjorn Maes, Sven Burger, Jaroslav Luksch, Pavel Kwiecien, Ivan Richter | Simulation of high-Q nanocavities with 1D photonic gap | Transparent Optical Networks (ICTON), pp. 1-4, 2012 |
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Jiri Petracek, Jaroslav Luksch, Bjorn Maes, Sven Burger, Pavel Kwiecien, Ivan Richter | Simulation of photonic crystal nanocavities using a bidirectional eigenmode propagation algorithm: a comparative study | Micro- and nanophotonic materials and devices, M. Ferrari, M. Marciniak, G. Righini, T. Szoplik, S. Varas (Eds.), pp. 109-112, 2012, ISBN: 9788377980200 |
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Sebastian Götschel, Martin Weiser, Anton Schiela | Solving Optimal Control Problems with the Kaskade 7 Finite Element Toolbox | Advances in DUNE, pp. 101-112, A. Dedner, B. Flemisch, R. Klöfkorn (Eds.), Springer, 2012 (preprint available as ZIB-Report 10-25) |
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Björn-Marcel Jeschke | Spezielle Eigenschaften von Simulated Annealing | Bachelor's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012 |
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Martin Weiser, Sebastian Götschel | State Trajectory Compression for Optimal Control with Parabolic PDEs | SIAM J. Sci. Comput., 34(1), pp. A161-A184, 2012 (preprint available as ZIB-Report 10-05) |
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Corinna Klapproth | The Contact-Stabilized Newmark Method - Consistency Error of a Spatiotemporal Discretization | ZIB-Report 12-18 |
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Marcus Weber | The funnel trap paradox | ZIB-Report 12-12 |
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J. Katzer, W. Pauer, H.-U. Moritz, Michael Wulkow | Thermal polymerization of styrene Part B | Macromol. React. Eng, Vol.6, pp. 225-238, 2012 |
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Jan Pomplun, Hans Wenzel, Sven Burger, Lin Zschiedrich, Maria Rozova, Frank Schmidt, Paul Crump, Hossein Ekhteraei, Christoph M. Schultz, Götz Erbert | Thermo-optical simulation of high-power diode lasers | Proc. SPIE, p. 825510, Vol.8255, 2012 |
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Oliver Sander, Corinna Klapproth, Jonathan Youett, Ralf Kornhuber, Peter Deuflhard | Towards an Efficient Numerical Simulation of Complex 3D Knee Joint Motion | ZIB-Report 12-06 |
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Adam Nielsen | Von Femtosekunden zu Minuten | Master's thesis, Freie Universität Berlin, 2012 |
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Jan-Martin Josten | Östrogenitäts-Approximation mittels physikochemischem Oberflächenvergleich | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2012 |
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2011 |
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Marcus Weber | A Subspace Approach to Molecular Markov State Models via a New Infinitesimal Generator | Habilitation, Freie Universität Berlin, 2011 |
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Mascha Berg, Julia Ritter, Susanna Röblitz | A mathematical model for the Zinc response of young pigs | ZIB-Report 11-05 |
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Vedat Durmaz, Konstantin Fackeldey, Marcus Weber | A rapidly Mixing Monte Carlo Method for the Simulation of Slow Molecular Processes | Applications of Monte Carlo Methods in Biology, Medicine and Other Fields of Science, Ch. Mode (Ed.), InTech, 2011 |
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H. Marike T. Boer, Claudia Stötzel, Susanna Röblitz, Peter Deuflhard, Roel F. Veerkamp, Henri Woelders | A simple mathematical model of the bovine estrous cycle | Journal of Theoretical Biology, 278(1), pp. 20-31, 2011 (preprint available as ZIB-Report 10-06) |
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Anton Schiela, Andreas Günther | An Interior Point Algorithm with Inexact Step Computation in Function Space for State Constrained Optimal Control | Numer. Math., 119(2), pp. 373-407, 2011 |
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Thomas Dierkes, Moritz Wade, Ulrich Nowak, Susanna Röblitz | BioPARKIN - Biology-related Parameter Identification in Large Kinetic Networks | ZIB-Report 11-15 |
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Marcus Weber, Alexander Bujotzek, Karsten Andrae, M. Weinhart, Rainer Haag | Computational entropy estimation of linear polyether modified surfaces and correlation with protein resistant properties of such surfaces | J. Mol. Sim., 2011 |
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Min Shan, Alexander Bujotzek, Frank Abendroth, Oliver Seitz, Marcus Weber, Rainer Haag | Conformational Analysis of Bivalent Estrogen Receptor-Ligands: From Intramolecular to Intermolecular Binding | ChemBioChem, 12(17), pp. 2587-2598, 2011 |
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Anton Schiela, Daniel Wachsmuth | Convergence Analysis of Smoothing Methods for Optimal Control of Stationary Variational Inequalities | ZIB-Report 11-23 |
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Konstantin Fackeldey | Coupling Meshbased and Meshfree Methods by a Transfer Operator Approach | IJPAM, 69(2), pp. 185-202, 2011 (preprint available as ZIB-Report 10-12) |
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Konstantin Fackeldey, Dorian Krause, Rolf Krause, Christoph Lenzen | Coupling Molecular Dynamics and Continua with Weak Constraints | SIAM Multiscale Model. Simul., Vol.9, pp. 1459-1494, 2011 |
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Frank Abendroth, Alexander Bujotzek, Min Shan, Rainer Haag, Marcus Weber, Oliver Seitz | DNA-controlled bivalent presentation of ligands for the estrogen receptor | Angew. Chem. Int. Ed., 2011 |
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Ch. Scheibe, Alexander Bujotzek, Jens Dernedde, Marcus Weber, O. Seitz | DNA-programmed spatial screening of carbohydrate-lectin interactions | Chem. Sci., Vol.2, pp. 770-775, 2011 |
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Andreas Günther, Hans Lamecker, Martin Weiser | Direct LDDMM of Discrete Currents with Adaptive Finite Elements | Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, pp. 1-14, X. Pennec, S. Joshi, M. Nielsen (Eds.), 2011 (preprint available as ZIB-Report 11-22) |
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Martina Klimm, Alexander Bujotzek, Marcus Weber | Direct Reweighting Strategies in Conformation Dynamics | MATCH Commun. Math. Comp. Chem., Vol.65(2), pp. 333-346, 2011 |
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Michael Hinze, Anton Schiela | Discretization of Interior Point Methods for State Constrained Elliptic Optimal Control Problems: optimal error estimates and parameter adjustment | Comp. Opt. and Appl., 48(3), pp. 581-600, 2011 (preprint available as ZIB-Report 07-40) |
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B. Kleemann, J. Kurz, J. Hetzler, Jan Pomplun, Sven Burger, Lin Zschiedrich, Frank Schmidt | Fast online inverse scattering with Reduced Basis Method (RBM) for a 3D phase grating with specific line roughness | Modelling Aspects in Optical Metrology III, p. 808309, Vol.8083, 2011 |
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Frank Schmidt, Jan Pomplun, Lin Zschiedrich, Sven Burger | Fast online simulation of 3D nanophotonic structures by the reduced basis method | Integrated Optics: Devices, Materials, and Technologies XV, p. 79410G, Vol.7941, 2011 |
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Jan Pomplun, Sven Burger, Maria Rozova, Lin Zschiedrich, Frank Schmidt | Finite element simulation of optical modes in VCSELs | Numerical Simulation of Optoelectronic Devices (NUSOD), 11th International Conference on, pp. 119-120, 2011 |
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Sven Burger, Jan Pomplun, Frank Schmidt, Lin Zschiedrich | Finite-element method simulations of high-Q nanocavities with 1D photonic bandgap | Physics and Simulation of Optoelectronic Devices XIX, p. 79330T, Vol.7933, 2011 |
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Mark Blome, HR Maurer, S. Greenhalgh | Geoelectric experimental design — Efficient acquisition and exploitation of complete pole-bipole data sets | GEOPHYSICS, 76(1), pp. F15-F26, 2011 |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt, Akiko Kato, Christian Laubis, Frank Scholze | Investigation of 3D Patterns on EUV Masks by Means of Scatterometry and Comparison to Numerical Simulations | Photomask Technology 2011, p. 81661Q, Vol.8166, 2011 |
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Bernd Bodermann, Egbert Buhr, Hans-Ulrich Danzebrink, Markus Bär, Frank Scholze, Michael Krumrey, Matthias Wurm, Petr Klapetek, Poul-Erik Hansen, Virpi Korpelainen, Marijn van Veghel, Andrew Yacoot, Samuli Siitonen, Omar El Gawhary, Sven Burger, Toni Saastamoinen | Joint Research on Scatterometry and AFM Wafer Metrology | AIP Conference Proceedings, 1395(1), pp. 319-323, 2011 |
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J. Zhao, B. Frank, Sven Burger, H. Giessen | Large-Area High-Quality Plasmonic Oligomers Fabricated by Angle-Controlled Colloidal Nanolithography | ACS Nano, 5(11), p. 9009, 2011 |
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Y. Neve-Oz, T. Pollok, Sven Burger, M. Golosovsky, D. Davidov | Localized resonant states and transmission in a two- dimensional photonic quasicrystal | Proc. of the 5th International Conference on Applied Mathematics, Simulation, Modelling (ASM ’II), Corfu, 2011, N. Mastorakis (Ed.), pp. 178-182, Vol.1, 2011, ISBN: 978-1-61804-016-9 |
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H. Marike T. Boer, Susanna Röblitz, Claudia Stötzel, Roel F. Veerkamp, Bas Kemp, Henri Woelders | Mechanisms regulating follicle wave patterns in the bovine estrous cycle investigated with a mathematical model | Journal of Dairy Science, 94(12), pp. 5987-6000, 2011 |
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Peter Deuflhard, Martin Weiser | Numerische Mathematik 3 | de Gruyter, Berlin, 2011 |
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Anton Schiela, Michael Hintermüller | On the Length of the Primal-Dual Path in Moreau-Yosida-based Path-following for State Constrained Optimal Control: Analysis and Numerics | ZIB-Report 11-37 |
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Lars Lubkoll | Optimal Control in Implant Shape Design | Master's thesis, Technische Universität Berlin, Fredi Tröltzsch (Advisor), 2011 |
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O. Scharkoi, Susanne Esslinger, Roland Becker, Marcus Weber, Irene Nehls | Phase I oxidation of alpha- and gamma-hexabromocyclododecane by cytochrome P450 enzymes: simulation of the stereoisomerism of hydroxylated metabolites | Organohalogen Compounds, Vol.73, pp. 730-733, 2011 |
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Jan Pomplun, Sven Burger, Lin Zschiedrich, Frank Schmidt | Reduced basis method for real-time inverse scatterometry | Modelling Aspects in Optical Metrology III, p. 808308, Vol.8083, 2011 |
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D. Lockau, Lin Zschiedrich, Sven Burger, Frank Schmidt, F. Ruske, Bernd Rech | Rigorous optical simulation of light management in crystalline silicon thin film solar cells with rough interface textures | Physics and Simulation of Optoelectronic Devices XIX, p. 79330M, Vol.7933, 2011 |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt | Rigorous simulations of 3D patterns on extreme ultraviolet lithography masks | Modelling Aspects in Optical Metrology III, Bernd Bodermann (Ed.), p. 80831B, Vol.8083, 2011 |
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Konstantin Fackeldey, Susanna Röblitz, O. Scharkoi, Marcus Weber | Soft Versus Hard Metastable Conformations in Molecular Simulations | Particle Methods II, Fundamentals and Applications, Barcelona, Spain 26-28 Oct. 2011, E. Onate and D.R.J. Owen (eds.), pp. 899-909, 2011 (preprint available as ZIB-Report 11-27) |
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G. Wong, M. Kang, H. Lee, Sven Burger, Lin Zschiedrich, F. Biancalana, P. Russell | Strongly Twisted Solid-Core PCF: A One-Dimensional Chiral Metamaterial | Frontiers in Optics, p. FMG3, 2011 |
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William R. Taylor, Evgenios I. Kornaropoulos, Stefan Kratzenstein, Rainald Ehrig, F. Plank, Markus O. Heller | Targeted Marker Placement for the Functional Identification of the Hip Joint Centre | Transactions Vol. 36, 2011 Annual Meeting of the Orthopedic Society, 2011 |
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Rainald Ehrig, Markus O. Heller, Stefan Kratzenstein, Georg Duda, Adam Trepczynski, William R. Taylor | The SCoRE residual: A quality index to assess the accuracy of joint estimations | Journal of Biomechanics, 44(7), pp. 1400-1404, 2011 |
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William R. Taylor, Berry M. Pöpplau, Christian König, Rainald Ehrig, Stefan Zachow, Georg Duda, Markus O. Heller | The medial-lateral force distribution in the ovine stifle joint during walking | Journal of Orthopaedic Research, 29(4), pp. 567-571, 2011 |
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Benjamin Kettner, Frank Schmidt | The pole condition as transparent boundary condition for resonance problems | Physics and Simulation of Optoelectronic Devices XIX, p. 79331B, Vol.7933, 2011 |
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Markus O. Heller, Stefan Kratzenstein, Rainald Ehrig, Georgi Wassilew, Georg Duda, William R. Taylor | The weighted optimal common shape technique improves identification of the hip joint centre of rotation in vivo | Journal of Orthopedic Research, Vol.29, pp. 1470-5, 2011 |
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Hans Wenzel, Paul Crump, Hossein Ekhteraei, Christoph M. Schultz, Jan Pomplun, Sven Burger, Lin Zschiedrich, Frank Schmidt, Götz Erbert | Theoretical and experimental analysis of the lateral modes of high-power broad-area lasers | Numerical Simulation of Optoelectronic Devices, pp. 143-144, 2011 |
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Alexander Bujotzek, Min Shan, Rainer Haag, Marcus Weber | Towards a rational spacer design for bivalent inhibition of estrogen receptor | J. Comput.-Aided Mol. Des., Vol.25(3), pp. 253-262, 2011 |
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Felix Schlosser, Mario Schoth, Sven Burger, Frank Schmidt, Andreas Knorr, S. Mukamel, Marten Richter | Ultrafast nonlinear spectroscopy with spatially confined fields | AIP Conference Proceedings, Vol.1398, pp. 94-96, 2011 |
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Sven Burger, Lin Zschiedrich, Frank Schmidt | 3D FEM Simulations of High-Q Resonances in Photonic Crystal Microcavities | Integrated Photonics Research, Silicon and Nanophotonics, p. IWB7, 2010 |
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Stefan Kratzenstein, Rainald Ehrig, Markus O. Heller, Georg Duda, William R. Taylor | A Quantification of Accuracy in Estimating Joint Centers | 17th Congress of the European Society of Biomechanics, 2010 |
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Christof Schütte, Michael Wulkow | A hybrid Galerkin-Monte-Carlo approach to higher-dimensional population balances in polymerization kinetics | Macromol. React. Eng., Vol.4, pp. 562-577, 2010 |
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Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georgi Wassilew, Georg Duda, William R. Taylor | A new approach for optimally reducing skin marker artifact allows determination of the hip joint center within 3mm | Transactions Vol. 35, 2010 Annual Meeting of the Orthopedic Society, 2010 |
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Marcus Weber, Karsten Andrae | A simple method for the estimation of entropy differences | MATCH Commun. Math. Comp. Chem. 2010, Vol.63(2), pp. 319-332, 2010 |
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Jan Pomplun, Frank Schmidt | Accelerated a posteriori error estimation for the reduced basis method with application to 3D electromagnetic scattering problems | SIAM J. Sci. Comput., Vol.32, pp. 498-520, 2010 |
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Jan Pomplun, Frank Schmidt, Sven Burger, Lin Zschiedrich | Adaptive Reduced Basis Method for Optical Scattering Problems | Integrated Photonics Research, Silicon and Nanophotonics, p. IWD4, 2010 |
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Fiete Haack, Susanna Röblitz, Olga Scharkoi, Burkhard Schmidt, Marcus Weber | Adaptive Spectral Clustering for Conformation Analysis | AIP Conference Proceedings, 1281(1), pp. 1585-1588, 2010 |
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Corinna Klapproth, Anton Schiela, Peter Deuflhard | Adaptive Timestep Control for the Contact-Stabilized Newmark Method | ZIB-Report 10-09 (Appeared in: Numerische Mathematik vol. 119 iss. 1 (2011), pp. 49-81) |
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Daniel Ruprecht | Analysis of a multi-scale asymptotic model for internal gravity waves in a moist atmosphere | Doctoral thesis, Freie Universität Berlin, Rupert Klein, Andrew J. Majda (Advisors), 2010 |
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Anton Schiela, Martin Weiser | Barrier methods for a control problem from hyperthermia treatment planning | Recent Advances in Optimization and its Applications in Engineering (Proceedings of 14th Belgian-French-German Conference on Optimization 2009), pp. 419-428, M. Diehl, F. Glineur, E. Jarlebring, W. Michiels (Eds.), Springer, 2010 (preprint available as ZIB-Report 09-36) |
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Mathias Wilhelms, Gunnar Seemann, Martin Weiser, Olaf Dössel | Benchmarking Solvers of the Monodomain Equation in Cardiac Electrophysiological Modeling | Biomed. Engineer., Vol.55, pp. 99-102, 2010 |
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Konstantin Fackeldey | Challenges in Atomistic-to-Continuum Coupling | (preprint available as ) |
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Caroline Lasser, Susanna Röblitz | Computing expectation values for molecular quantum dynamics | SIAM Journal on Scientific Computing, 32(3), pp. 1465-1483, 2010 |
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Martin Weiser, Stefan Zachow, Peter Deuflhard | Craniofacial Surgery Planning Based on Virtual Patient Models | it - Information Technology, 52(5), pp. 258-263, 2010 |
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Martin Weiser | Delayed Residual Compensation for Bidomain Equations | AIP Conference Proceedings, Vol.1281, pp. 419-422, 2010 |
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Martin Weiser, Mathias Röllig, Ralf Arndt, Bodo Erdmann | Development and test of a numerical model for pulse thermography in civil engineering | Heat and Mass Transfer, 46(11-12), pp. 1419-1428, 2010 (preprint available as ZIB-Report 08-45) |
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D. Siegel, Karsten Andrae, Matthias Proske, C. Kochan, Matthias Koch, Marcus Weber, Irene Nehls | Dynamic covalent hydrazine chemistry as a specific extraction and cleanup technique for the quantification of the Fusarium mycotoxin zearalenone in edible oils | Journal of Chromatography A, Vol.1217(15), pp. 2206-15, 2010 |
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Sven Burger, Lin Zschiedrich, Frank Schmidt | FEM Simulation of Plasmon Laser Resonances | AIP Conference Proceedings, Vol.1281, pp. 1613-1616, 2010 |
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Sven Burger, Frank Schmidt, Lin Zschiedrich | FEM simulation of resonances in low-Q cavities for plasmon lasers | International Workshop on Photonic Nanomaterials, Friedrich-Schiller-Universität Jena (Ed.), p. 36, 2010, ISBN: 978-3-00-031358-5 |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt | Finite element method for accurate 3D simulation of plasmonic waveguides | Integrated Optics: Devices, Materials, and Technologies XIV, p. 76040F, Vol.7604, 2010 |
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Jan Pomplun, Sven Burger, Frank Schmidt, Andrei Schliwa, Dieter Bimberg, Agnieszka Pietrzak, Hans Wenzel, Götz Erbert | Finite element simulation of the optical modes of semiconductor lasers | Phys. Status Solidi B, Vol.247, pp. 846-853, 2010 |
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Evgenios I. Kornaropoulos, William R. Taylor, Georg Duda, Rainald Ehrig, Georg Matziolis, Michael Müller, Georgi Wassilew, Patrick Asbach, Carsten Perka, Markus O. Heller | Frontal plane alignment: An imageless method to predict the mechanical femoral–tibial angle (mFTA) based on functional determination of joint centres and axes | Gait & Posture, 31(2), pp. 204-208, 2010 |
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J. Gansel, M. Wegener, Sven Burger, S. Linden | Gold helix photonic metamaterials: a numerical parameter study | Opt. Express, Vol.18, pp. 1059-1069, 2010 |
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H. H. Dieter, K. Götz, K. Kümmerer, B. Rechenberg, F. Keil | Handlungsmöglichkeiten zur Minderung des Eintrags von Humanarzneimitteln und ihren Rückständen in das Roh- und Trinkwasser. | H.H. Dieter, K. Götz, K. Kümmerer, B. Rechenberg, F. Keil (Eds.), Umweltbundesamt, 2010 |
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Peter Deuflhard, Susanna Röblitz, Claudia Stötzel | Mathematical Systems Biology at Zuse Institute Berlin (ZIB) | BioTOPics - Journal of Biotechnology in Berlin-Brandenburg, Vol.39, 2010 |
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Peter Deuflhard, Olaf Dössel, Alfred Louis, Stefan Zachow | More Mathematics into Medicine! | Production Factor Mathematics, Springer, pp. 357-378, 2010 |
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Y. Neve-Oz, T. Pollok, Sven Burger, M. Golosovsky, R. Lifshitz, D. Davidov | Negative Refraction and Omni Directionality in 2D Photonic Quasicrystal Superstructure | AIP Conference Proceedings, Vol.1281, p. 1622, 2010 |
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Sven Burger, Frank Schmidt, Lin Zschiedrich | Numerical Investigation of Photonic Crystal Microcavities in Silicon-on-Insulator Waveguides | Photonic and Phononic Crystal Materials and Devices X, p. 76091Q, Vol.7609, 2010 |
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Konstantin Fackeldey, Dorian Krause, Rolf Krause | Numerical Validation of Constraints Based Multiscale Methods | Lecture Notes in Computational Science and Engineering, Michael Griebel, M. Schweitzer (Eds.), pp. 141-154, 2010 |
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Sven Burger, Frank Schmidt, Lin Zschiedrich | Numerical investigation of optical resonances in circular grating resonators | Silicon Photonics V, p. 760610, Vol.7606, 2010 |
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Ph. Metzner, Marcus Weber, Christof Schütte | Observation uncertainty in reversible Markov chains | Phys. Rev. E, 82(3), p. 031114, 2010 |
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Martin Weiser, Bodo Erdmann, Peter Deuflhard | On Efficiency and Accuracy in Cardioelectric Simulation | Progress in Industrial Mathematics at ECMI 2008, pp. 371-376, E. Wilson, A. Fitt, H. Ockendon, J. Norbury (Eds.), Springer, 2010 (preprint available as ZIB-Report 08-41) |
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Peter Wust, Mirko Weihrauch, Martin Weiser, Johanna Gellermann, Steffen Eisenhardt, Thorsten Chobrok, Volker Budach | Optimization of clinical radiofrequency hyperthermia by use of MR-thermography in a hybrid system | World Congress on Medical Physics and Biomedical Engineering, September 2009, Munich, Germany, pp. 174-175, O. Dössel, W. Schlegel, R. Magjarevic (Eds.), Springer, 2010 |
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Jan Pomplun, Frank Schmidt | Reduced Basis Method for Electromagnetic Field Computations | Scientific Computing in Electrical Engineering SCEE 2008, Springer Berlin Heidelberg, p. 85, 2010 |
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Jan Pomplun | Reduced basis method for electromagnetic scattering problems | Doctoral thesis, Freie Universität Berlin, Frank Schmidt (Advisor), 2010 |
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Jan Pomplun, Lin Zschiedrich, Sven Burger, Frank Schmidt, Jacek Tyminski, Donis Flagello, N. Toshiharu | Reduced basis method for source mask optimization | Photomask Technology, p. 78230E, Vol.7823, 2010 |
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Maximilian Ranneberg, Martin Weiser, Mirko Weihrauch, Volker Budach, Johanna Gellermann, Peter Wust | Regularized Antenna Profile Adaptation in Online Hyperthermia Treatment | Medical Physics, Vol.37, pp. 5382-5394, 2010 |
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Y. Neve-Oz, T. Pollok, Sven Burger, M. Golosovsky, D. Davidov | Resonant Transmission of Electromagnetic Waves through 2D Photonic Quasicrystals | J. Appl. Phys., Vol.107, p. 063105, 2010 |
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Sebastian Götschel, Martin Weiser | State Trajectory Compression in Optimal Control | PAMM, 10(1), pp. 579-580, 2010 |
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Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georg Duda, William R. Taylor | The Hip Joint Centre can be determined to within 3 mm | 17th Congress of the European Society of Biomechanics, 2010 |
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Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georg Duda, William R. Taylor | The Residual: A Reliable Measure of Accuracy in the Determination of Joint Centers | Transactions Vol. 35, 2010 Annual Meeting of the Orthopedic Society, 2010 |
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Christian Meyer, Lucia Panizzi, Anton Schiela | Uniqueness criteria for solutions of the adjoint equation in state-constrained optimal control | ZIB-Report 10-28 |
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2009 |
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André Massing | 1D-Reduktion thermal signifikanter Aderstränge in der Hyperthermie-Modellierung | Master's thesis, Freie Universität Berlin, Martin Weiser, Peter Deuflhard (Advisors), 2009 |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt, Benjamin Kettner, D. Lockau | 3D Finite-Element Simulations of Enhanced Light Transmission Through Arrays of Holes in Metal Films | Numerical Methods in Optical Metrology, p. 73900H, Vol.7390, 2009 |
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Corinna Klapproth, Peter Deuflhard, Anton Schiela | A Perturbation Result for Dynamical Contact Problems | Numer. Math, Vol.2, pp. 237-257, 2009 (preprint available as ZIB-Report 08-27) |
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Heiko Schmidt, Michael Oevermann, Rob J.M. Bastiaans, Alan R. Kerstein | A Priori Tabulation of Turbulent Flame Speeds via a Combination of a Stochastic Mixing Model and Flamelet Generated Manifolds, Extended to Incorporate Strain Effects | ZIB-Report 09-09 |
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Marcus Weber | A Subspace Approach to Molecular Markov State Models via an Infinitesimal Generator | ZIB-Report 09-27 |
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Julia Skibina, Rumen Iliew, Jens Bethge, Martin Bock, Dorit Fischer, Valentin Beloglazov, Reiner Wedell, Sven Burger, Günter Steinmeyer | A chirped photonic crystal fiber for high-fidelity guiding of sub-100 fs pluses | CLEO/QELS, p. CMHH1, 2009 |
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Julia Skibina, Rumen Iliew, Jens Bethge, Martin Bock, Dorit Fischer, Valentin Beloglazov, Reiner Wedell, Sven Burger, Günter Steinmeyer | A chirped photonic crystal fiber for ultrashort laser pulse delivery | CLEO Europe - EQEC, 2009 |
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Susanne Kilian, Matthias Münch | A new generalized domain decomposition strategy for the efficient parallel solution of the FDS-pressure equation. Part I: Theory, Concept and Implementation | ZIB-Report 09-19 |
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Matthias Münch, Susanne Kilian | A new generalized domain decomposition strategy for the efficient parallel solution of the FDS-pressure equation. Part II: Verification and Validation | ZIB-Report 09-20 |
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D. Lockau, Lin Zschiedrich, Sven Burger | Accurate simulation of light transmission through subwavelength apertures in metal films | J. Opt. A, Vol.11, p. 114013, 2009 |
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Peter Deuflhard, Bodo Erdmann, Rainer Roitzsch, Glenn Terje Lines | Adaptive Finite Element Simulation of Ventricular Dynamics | J. Computing and Visualization in Science, Vol.12, pp. 201-205, 2009 |
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Anton Schiela | An Extended Mathematical Framework for Barrier Methods in Function Space | Domain Decomposition Methods in Science and Engineering XVIII, Vol.70, Lecture Notes in Computational Science and Engineering, 2009 (preprint available as ZIB-Report 08-07) |
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Evgenios I. Kornaropoulos, William R. Taylor, Georg Duda, Rainald Ehrig, Markus O. Heller | An imageless method to quantify the Mechanical Femoral-Tibial Angle (MFTA) using functionally defined joint centers and axes. | 6th Annual meeting of the German Society for Biomechanics (DGfB), 2009 |
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Evgenios I. Kornaropoulos, William R. Taylor, Georg Duda, Rainald Ehrig, Georg Matziolis, Michael Müller, Georgi Wassilew, Patrick Asbach, Carsten Perka, Markus O. Heller | An imageless method to quantify the mechanical femoral-tibial angle based on the functional determination of joint centers and axes | Annual meeting of the ESMAC 2009, 2009 |
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Anton Schiela | Barrier Methods for Optimal Control Problems with State Constraints | SIAM J. on Optimization, 20(2), pp. 1002-1031, 2009 (preprint available as ) |
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Johannes Hoffmann, Christian Hafner, P. Leidenberger, J. Hesselbarth, Sven Burger | Comparison of electromagnetic field solvers for the 3D analysis of plasmonic nano antennas | Numerical Methods in Optical Metrology, p. 73900J, Vol.7390, 2009 |
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Caroline Lasser, Susanna Röblitz | Computing expectation values for molecular quantum dynamics | ZIB-Report 09-30 (Appeared in: SIAM J. Sci. Comput. 2010, 32(3), pp. 1465-1483) |
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O. Scharkoi | Conformation Dynamics Design of Pain Relief Drugs | Master's thesis, Freie Universität Berlin, 2009 |
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Corinna Klapproth, Anton Schiela, Peter Deuflhard | Consistency Results for the Contact-Stabilized Newmark Method | ZIB-Report 09-06 (Appeared under the title "Consistency Results on Newmark Methods for Dynamical Contact Problems" in: Numer. Math., 116/1:65-94 (2010)) |
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M. Karl, Benjamin Kettner, Sven Burger, Frank Schmidt, H. Kalt, M. Hetterich | Dependencies of micro-pillar cavity quality factors calculated with finite element methods | Optics Express, Vol.17, p. 1144, 2009 |
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Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georg Duda, Jörg H. Schröder, William R. Taylor | Der Vergleich von nicht-invasiven Techniken zur Bestimmung der Hüftgelenksposition | Annual meeting of the German Society of Orthopaedics and Trauma Surgery, 2009 |
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Stefan Kratzenstein, Markus O. Heller, Rainald Ehrig, Georg Duda, Jörg H. Schröder, William R. Taylor | Die Bestimmung der Genauigkeit nicht-invasiver Techniken zur Ermittlung der Hüftgelenksposition in-vivo | 6th annual meeting of the German Society for Biomechanics (DGfB), 2009 |
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Alexander Bujotzek, Marcus Weber | Efficient Simulation of Ligand-Receptor Binding Processes Using the Conformation Dynamics Approach | Journal of Bioinformatics and Computational Biology, Vol.7(5), pp. 811-831, 2009 |
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D. Lockau, Lin Zschiedrich, Frank Schmidt, Sven Burger, Bernd Rech | Efficient simulation of plasmonic structures for solar cells | International Workshop on Optical Waveguide Theory and Numerical Modelling, p. 48, Vol.XVIII, 2009 |
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Y. Neve-Oz, T. Pollok, Sven Burger, M. Golosovsky, D. Davidov | Fast Light and Focusing in 2D Photonic Quasicrystals | PIERS Online, Vol.5, p. 451, 2009 |
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Sven Burger, B. Kleemann, Lin Zschiedrich, Frank Schmidt | Finite-Element Simulations of Light Propagation through Circular Subwavelength Apertures | Microtechnologies for the New Millenium, p. 736621, Vol.7366, 2009 |
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Sven Burger, D. Lockau, Lin Zschiedrich, Frank Schmidt | Finite-element simulations of light propagation through subwavelength apertures in metal films | International Workshop on Optical Waveguide Theory and Numerical Modelling, p. 59, Vol.XVIII, 2009 |
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Evgenios I. Kornaropoulos, William R. Taylor, Georg Duda, Rainald Ehrig, Markus O. Heller | Frontal plane lower limb alignment using functionally determined joint centers and axes | International Conference on Computational Bioengineering, 2009 |
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Susanna Röblitz, Marcus Weber | Fuzzy Spectral Clustering by PCCA+ | Classification and Clustering: Models, Software and Applications, pp. 73-79, 2009 |
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Jens Bethge, Günter Steinmeyer, Sven Burger, Falk Lederer, Rumen Iliew | Guiding properties of chirped photonic crystal fibers | Journal of Lightwave Technology, Vol.27, p. 1698, 2009 |
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Robert Köppen, Roland Becker, Marcus Weber, Vedat Durmaz, Irene Nehls | HBCD stereoisimers: Thermal interconversion and enantiospecific trace analysis in biota | Organohalogen Compounds, Vol.70, pp. 910-913, 2009 |
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Manuel Decker, Sven Burger, S. Linden, M. Wegener | Magnetization waves in split-ring-resonator arrays | Phys. Rev. B, 80(19), p. 193102, 2009 |
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Isabel Reinecke | Mathematical modeling and simulation of the female menstrual cycle | Doctoral thesis, Freie Universität Berlin, 2009 |
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Daniel Ruprecht, Rupert Klein, Andrew J. Majda | Moisture-Gravity Wave Interactions in a Multiscale Environment | ZIB-Report 09-21 |
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Konstantin Fackeldey, Rolf Krause | Multiscale Coupling in Function Space - Weak Coupling between Molecular Dynamics and Continuum Mechanics | International Journal for Numerical Methods in Engineering, 79(12), pp. 1517-1535, 2009 |
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William R. Taylor, Stefan Kratzenstein, Evgenios I. Kornaropoulos, Rainald Ehrig, Philippe Moewis, Markus O. Heller | Non-invasive Assessment of Skeletal Kinematics | Measurement and Sensing in Medicine and Health, 2009 |
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Sven Burger, Lin Zschiedrich | Numerical Investigation of Silicon-on-Insulator 1D Photonic Crystal Microcavities | Theoretical and computational nanooptics, Dmitry Chigrin (Ed.), pp. 43-45, Vol.1176, 2009 |
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Heiko Schmidt, Carmen Jimenéz | Numerical study of the direct pressure effect of acoustic waves in planar premixed flames | ZIB-Report 09-31 |
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Martin Weiser | Optimization and Identification in Regional Hyperthermia | Int. J. Appl. Electromagn. and Mech., Vol.30, pp. 265-275, 2009 (preprint available as ZIB-Report 08-40) |
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Martin Weiser | Pointwise Nonlinear Scaling for Reaction-Diffusion Equations | Appl. Num. Math., 59(8), pp. 1858-1869, 2009 (preprint available as ZIB-Report 07-45) |
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Marcus Weber, Vedat Durmaz, Roland Becker, Susanne Esslinger | Predictive Identification of Pentabromocyclododecane (PBCD) Isomers with high Binding Affinity to hTTR | Organohalogen Compounds, Vol.71, pp. 247-252, 2009 |
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Jan Pomplun, Lin Zschiedrich, Sven Burger, Frank Schmidt | Reduced basis method for computational lithography | Photomask Technology, p. 74882B, Vol.7488, 2009 |
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Jan Pomplun, Frank Schmidt | Reduced basis method for fast and robust simulation of electromagnetic scattering problems | Numerical Methods in Optical Metrology, p. 73900I, Vol.7390, 2009 |
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Stefan Kratzenstein, William R. Taylor, Rainald Ehrig, Markus O. Heller | Reduction of the influence of skin marker artefacts using the optimal common shape technique | Annual meeting of the ESMAC 2009, 2009 |
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Fiete Haack | Representative Spectral Clustering for Large Data Sets applied to Gene Expression Data | Master's thesis, Freie Universität Berlin, Marcus Weber (Advisor), 2009 |
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William R. Taylor, Evgenios I. Kornaropoulos, Rainald Ehrig, Markus O. Heller, Georg Duda | Reproducibility of a functional approach to gait analysis | Annual meeting of the ESMAC 2009, 2009 |
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Sven Burger | Simulation method improves accuracy for optical metrology and nanooptics design | SPIE Newsroom, 2009 |
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Marcus Weber | Spurenstoffe im Trinkwasser - Risikoqualifizierung im Rechner? | Schriftenreihe des Vereins für Wasser-, Boden- und Lufthygiene, L. Dunemann, O. Schmoll (Eds.), 2009 |
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Anton Schiela | State constrained optimal control problems with states of low regularity | SIAM J. on Control and Optimization, 48(4), pp. 2407-2432, 2009 (preprint available as ZIB-Report 08-24) |
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Susanna Röblitz | Statistical Error Estimation and Grid-free Hierarchical Refinement in Conformation Dynamics | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Wilhelm Huisinga (Advisors), 2009 |
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Uwe Prüfert, Anton Schiela | The Minimization of a maximum-norm functional subject to an elliptic PDE and state constraints | Z. angew. Math. Mech., 89(7), pp. 536-551, 2009 (preprint available as ZIB-Report 08-17) |
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Konstantin Fackeldey | The Weak Coupling Method for Coupling Continuum Mechanics with Molecular Dynamics | Doctoral thesis, Institute for Numerical Simulation, Uni Bonn, 2009 |
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Vedat Durmaz | Theoretical Investigations on HBCD and PBCD | Master's thesis, Freie Universität Berlin, 2009 |
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Lin Zschiedrich | Transparent boundary conditions for Maxwell's equations: Numerical concepts beyond the PML method | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, Ralf Hiptmair (Advisors), 2009 |
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Konstantin Fackeldey, Dorian Krause, Rolf Krause | Weak Coupling Algorithms in Multiscale Simulations | Proceedings of the third Inter. Confer. on Comp. Meth. for Coupled Problems in Science and Engrg, p. 1023pp, 2009 |
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Xavier Antoine, Anton Arnold, Christophe Besse, Matthias Ehrhardt, Achim Schädle | A Review of Transparent and Artificial Boundary Conditions Techniques for Linear and Nonlinear Schrödinger Equations | Commun. Comput. Phys., Vol.4, pp. 729-796, 2008 (preprint available as ZIB-Report 07-34) |
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Anton Schiela | A Simplified Approach to Semismooth Newton Methods in Function Space | SIAM J. on Optimization, 19(3), pp. 369-393, 2008 |
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Martin Weiser, Tobias Gänzler, Anton Schiela | A control reduced primal interior point method for a class of control constrained optimal control problems | Comput. Optim. Appl., 41(1), pp. 127-145, 2008 (preprint available as ZIB-Report 04-38) |
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Heiko Schmidt, Michael Oevermann, Rob J.M. Bastiaans, Alan R. Kerstein | A priori Tabulation of Turbulent Flame Speeds via a Combination of a Stochastic Mixing Model and Flamelet Generated Manifolds | ZIB-Report 08-02 |
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Lin Zschiedrich, Sven Burger, Achim Schädle, Frank Schmidt | A rigorous finite-element domain decomposition method for electromagnetic near field simulations | Optical Microlithography XXI, Harry Levinson, Mircea Dusa (Eds.), Vol.6924, 2008 |
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Peter Deuflhard, Wilhelm Huisinga, Tobias Jahnke, Michael Wulkow | Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation | SIAM J. Sci. Comput, 30(6), pp. 2990-3011, 2008 (preprint available as ZIB-Report 07-04) |
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Maria Lopez-Fernandez, Christian Lubich, Achim Schädle | Adaptive, Fast and Oblivious Convolution in Evolution Equations with Memory | SIAM J. Sci. Comput., 30(2), pp. 1015-1037, 2008 (preprint available as ZIB-Report 06-45) |
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Frank Schmidt, Sven Burger, Jan Pomplun, Lin Zschiedrich | Advanced FEM analysis of optical waveguides: algorithms and applications | Integrated Optics, Christoph Greiner, Christoph Wächter (Eds.), p. 689602, Vol.6896, 2008 |
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Marcus Weber | An efficient analysis of rare events in canonical ensemble dynamics | ZIB-Report 08-36 |
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Gunter Carqué, Antony Z. Owinoh, Rupert Klein, Andrew J. Majda | Asymptotic Scale Analysis of Precipitating Clouds | ZIB-Report 08-03 |
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Anton Schiela, Winnifried Wollner | Barrier Methods for Optimal Control Problems with Convex Nonlinear Gradient Constraints | ZIB-Report 08-47 |
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Sven Burger, Lin Zschiedrich, Frank Schmidt, Peter Evanschitzky, Andreas Erdmann | Benchmark of rigorous methods for electromagnetic field simulation | Photomask Technology, H. Kawahira, L. S. Zurbrick (Eds.), p. 71221, Vol.7122, 2008 |
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Juan Pedro Mellado, Bjorn Stevens, Heiko Schmidt, Norbert Peters | Buoyancy-reversal in cloud-top mixing layers | ZIB-Report 08-50 |
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Konstantin Fackeldey, Rolf Krause | CM/MD Coupling - A Function Space Oriented Multiscale-Coupling Approach | Proc. Appl. Math. Mech., p. 10495pp, 8(1), 2008 |
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Marcus Weber, Roland Becker, Robert Köppen, Vedat Durmaz | Classical hybrid Monte-Carlo simulations of the interconversion of hexabromocyclododecane | Journal of Molecular Simulation, 34(7), pp. 727-736, 2008 (preprint available as ZIB-Report 07-31) |
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Susanna Kube, Marcus Weber | Computation of equilibrium densities in metastable dynamical systems by domain decomposition | Numerical Analysis and Applied Mathematics, International Conference on Numerical Analysis and Applied Mathematics 2008, pp. 339-342, Vol.1048, 2008 |
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G. Bergmann, F. Graichen, A. Rohlmann, Alwina Bender, Rainald Ehrig, P. Westerhoff, B. Heinlein | Design and calibration of load sensing orthopaedic implants | Journal Biomech. Eng., pp. 02109-1–02109–9, 2008 |
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Frank Scholze, Christian Laubis, Gerhard Ulm, Uwe Dersch, Jan Pomplun, Sven Burger, Frank Schmidt | Evaluation of EUV scatterometry for CD characterization of EUV masks using rigorous FEM-simulation | Emerging Lithographic Technologies XII, Frank Schellenberg (Ed.), Vol.6921, 2008 |
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Sven Burger, Lin Zschiedrich, Benjamin Kettner, Frank Schmidt | FEM simulation of light scattering by nonspherical objects | Mie Theory 1908 – 2008, W. Hergert, T. Wriedt (Eds.), Universität Bremen, pp. 82-83, 2008 |
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Michael Wulkow | Feature article - Computer Aided Modeling of Polymer Reaction Engineering - The Status of Predici, 1 - Simulation | Macromol. React. Eng., Vol.2, pp. 461-494, 2008 |
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Jan Pomplun, Lin Zschiedrich, Roland Klose, Frank Schmidt, Sven Burger | Finite Element Simulation of Radiation Losses in Photonic Crystal Fibers | Nanophotonic Materials: Photonic Crystals, Plasmonics, and Metamaterials, Wiley-VCH, pp. 313-331, 2008 |
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Lin Zschiedrich, Frank Schmidt | Finite element simulation of light propagation in non-periodic mask patterns | Photomask and Next-Generation Lithography Mask Technology XV, Toshiyuki Horiuchi (Ed.), Vol.7028, 2008 |
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O. Schenk, Andreas Wächter, Martin Weiser | Inertia Revealing Preconditioning For Large-Scale Nonconvex Constrained Optimization | SIAM J. Sci. Comp., 31(2), pp. 939-960, 2008 (preprint available as ZIB-Report 07-32) |
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Anton Schiela, Andreas Günther | Interior Point Methods in Function Space for State Constraints - Inexact Newton and Adaptivity | ZIB-Report 09-01 (A rev. vers. appeared u. the title "An interior point algorithm with inexact step computation in function space for state constrained optimal control" in: Numerische Mathematik 119(2): 373-407(2011)) |
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Sven Burger, Lin Zschiedrich, Jan Pomplun, Frank Schmidt | JCMsuite: An Adaptive FEM Solver for Precise Simulations in Nano-Optics | Integrated Photonics and Nanophotonics Research and Applications, p. ITuE4, 2008 |
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Michael Oevermann, Heiko Schmidt, Alan R. Kerstein | Linear-Eddy Modeling of Autoignition under Thermal Stratification | ZIB-Report 08-05 |
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Peter Deuflhard, Olaf Dössel, Alfred Louis, Stefan Zachow | Mehr Mathematik wagen in der Medizin | ZIB-Report 08-25 (Ersch. in: Produktionsfaktor Mathematik : wie Mathematik Technik und Wirtschaft bewegt / Martin Grötschel, Klaus Lucas, Volker Mehrmann (Hrsg.) Berlin : Springer, 2009. (acatech diskutiert) ISBN 978-3-540-89434-6 S. 435-459) |
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Jan Pomplun, Sven Burger, Frank Schmidt, Frank Scholze, Christian Laubis, Uwe Dersch | Metrology of EUV masks by EUV-scatterometry and finite element analysis | Photomask and Next-Generation Lithography Mask Technology XV, Toshiyuki Horiuchi (Ed.), Vol.7028, 2008 |
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Christian Hellmich, Cornelia Kober, Bodo Erdmann | Micromechanics-based conversion of CT data into anisotropic elasticity tensors, applied to FE simulations of a mandible | Annals of Biomedical Engineering, 36(1), pp. 108-122, 2008 |
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Isabel Reinecke, Peter Deuflhard | Model Development and Decomposition in Physiology | Handbook of Research on Systems Biology Applications in Medicine, A. Daskalaki (Ed.), pp. 759-797, Vol.2, 2008 |
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Stefan Zachow, Martin Weiser, Peter Deuflhard | Modellgestützte Operationsplanung in der Kopfchirurgie | Modellgestützte Therapie, Wolfgang Niederlag, Heinz Lemke, Jürgen Meixensberger, Michael Baumann (Eds.), Health Academy, pp. 140-156, 2008 |
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Ingo Schräer | Modellreduktion in der Hyperthermie mittels POD | Master's thesis, FU Berlin, 2008 |
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Ingo Schräer | Modellreduktion in der regionalen Hyperthermie mittels POD | Master's thesis, FU Berlin, 2008 |
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Susanna Kube, Caroline Lasser, Marcus Weber | Monte Carlo sampling of Wigner functions and surface hopping quantum dynamics | Journal of Computational Physics, 228(6), pp. 1947-1962, 2008 (preprint available as ZIB-Report 07-17) |
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Gunter Carqué, Heiko Schmidt, Bjorn Stevens, Rupert Klein | Plausibility Check of an Asymptotic Column Model for Deep Convective Clouds | ZIB-Report 08-44 |
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Frank Schmidt, Thorsten Hohage, Roland Klose, Achim Schädle, Lin Zschiedrich | Pole condition: A numerical method for Helmholtz-type scattering problems with inhomogeneous exterior domain | J. Comput. Appl. Math., 218(1), pp. 61-69, 2008 |
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P.-J. Lin, L. Grimm, Michael Wulkow, D. Hempel, R. Krull | Population Balance Modeling of the Conidial Aggregation of Aspergillus niger | Biotechnology and Bioengineering, 99(2), pp. 341-350, 2008 |
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Susanna Kube, Marcus Weber | Preserving the Markov Property of Reduced Reversible Markov Chains | Numerical Analysis and Applied Mathematics, International Conference on Numerical Analysis and Applied Mathematics 2008, pp. 593-596, Vol.1048, 2008 |
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Fiete Haack | Properties of Reduced Reversible Markov Chains | ZIB-Report 08-42 |
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Konstantin Fackeldey, Dorian Krause, Rolf Krause | Quadrature and Implementation of the Weak Coupling Method | MMM 2008: Proceedings of the 4th International Conference on Multiscale Materials Modelling, 27-31 October 2008, Tallahassee, Fla., pp. 62-65, 2008 |
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Jan Pomplun, Frank Schmidt | Reduced Basis Method for Nano Optical Simulations | Integrated Photonics and Nanophotonics Research and Applications, p. IWD7, 2008 |
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A. Guerler, Sebastian Moll, Marcus Weber, Holger Meyer, Frank Cordes | Selection and flexible optimization of binding modes from conformation ensembles | Biosystems, 92(1), pp. 42-48, 2008 |
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Konstantin Fackeldey, Rolf Krause, M. Schweitzer | Stability of Energy Transfer in the Weak Coupling Method | Meshfree Methods for Partial Differential Equations IV, Michael Griebel, M. Schweitzer (Eds.), pp. 111-121, Vol.65, Lecture Notes in Computational Science and Engineering, 2008 |
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Anton Schiela, Martin Weiser | Superlinear convergence of the Control Reduced Interior Point Method for PDE Constrained Optimization | Computational Optimization and Applications, 39(3), pp. 369-393, 2008 (preprint available as ZIB-Report 05-15) |
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Stefan Brüggemann, Nanette Bauer, Eberhard Fuchs, Axel Polt, Bernhard Wagner, Michael Wulkow | Support of Strategic Business Decisions at BASF’s Largest Integrated Production Site Based on Site-Wide Verbund Simulation | Computer Aided Chem. Eng., Vol.25, pp. 925-930, 2008 |
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Uwe Prüfert, Fredi Tröltzsch, Martin Weiser | The convergence of an interior point method for an elliptic control problem with mixed control-state constraints | Comput. Optim. Appl., 39(2), pp. 183-218, 2008 (preprint available as ZIB-Report 04-47) |
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Daniel Ruprecht, Achim Schädle, Frank Schmidt, Lin Zschiedrich | Transparent boundary conditions for time-dependent problems | SIAM J. Sci. Comput., 30(5), pp. 2358-2385, 2008 (preprint available as ZIB-Report 07-12) |
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2007 |
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Andre Massing | 1D-Reduktion thermal signifikanter Aderstränge in der Hyperthermie-Modellierung | Master's thesis, FU Berlin, 2007 |
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Andre Massing | 1D-Reduktion thermal signifikanter Aderstränge in der Hyperthermie-Modellierung | Master's thesis, FU Berlin, 2007 |
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Sven Burger, Lin Zschiedrich, Frank Schmidt, Roderick Köhle, Thomas Henkel, Bernd Küchler, Christoph Nölscher | 3D simulations of electromagnetic fields in nanostructures using the time-harmonic finite-element method | Modeling Aspects in Optical Metrology, Harald Bosse (Ed.), p. 66170V, Vol.6617, 2007 |
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Susanna Kube, Marcus Weber | A Coarse Graining Method for the Identification of Transition rates between Molecular Conformations | Journal of Chemical Physics, 126(2), 2007 |
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Isabel Reinecke, Peter Deuflhard | A Complex Mathematical Model of the Human Menstrual Cycle | Journal of Theoretical Biology, 247(2), pp. 303-330, 2007 (preprint available as ) |
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Peter Deuflhard, Rolf Krause, Susanne Ertel | A Contact-Stabilized Newmark Method for Dynamical Contact Problems | International Journal for Numerical Methods in Engineering, 73(9), pp. 1274-1290, 2007 (preprint available as ) |
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M. Soares, G. Teschke, M. Zhariy | A Regularization for Nonlinear Diffusion Equations in a Multiresolution Framework | Mathematical Methods in Applied Sciences, 2007 |
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Rainald Ehrig, William R. Taylor, Georg Duda, Markus O. Heller | A Survey for Formal Methods for Determining Functional Joint Axes | Journal of Biomechanics, pp. 2150-2157, 2007 |
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Markus O. Heller, Christian König, F. Graichen, S. Hinterwimmer, Rainald Ehrig, G. Duda, William R. Taylor | A new model to predict in vivo human knee kinematics under physiological-like muscle activation | Journal of Biomechanics, pp. 45-53, 2007 |
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Mirko Weihrauch, Peter Wust, Martin Weiser, Johanna Nadobny, Steffen Eisenhardt, Volker Budach, Johanna Gellermann | Adaptation of antenna profiles for control of MR guided hyperthermia (HT) in a hybrid MR-HT system | Medical Physics, 34(12), pp. 4717-4725, 2007 |
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Jan Pomplun, Sven Burger, Lin Zschiedrich, Frank Schmidt | Adaptive finite element method for simulation of optical nano structures | Phys. Status Solidi B, Vol.244, pp. 3419-3434, 2007 |
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Achim Schädle, Lin Zschiedrich | Additive Schwarz method for scattering problems using the PML method at interfaces | Domain Decomposition Methods in Science and Engineering XVI, Olof Widlund, David Keyes (Eds.), pp. 205-212, Vol.55, Lecture Notes in computational Science and Engineering, 2007 (preprint available as ZIB-Report 05-27) |
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V. Lehmann, G. Teschke | Advanced Intermittent Clutter Filtering for Radar Wind Profiler | under review, 2007 |
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Johanna Nadobny, Mirko Weihrauch, Martin Weiser, Johanna Gellermann, Waldemar Wlodarczyk, Volker Budach, Peter Wust | Advances in the Planning and Control of the MR-guided Regional Hyperthermia Applications | Proc. Int. Conf. Electromagnetics in Advanced Applications, ICEAA 2007, Torino, Italy, pp. 1010-1013, 2007 |
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Martin Weiser, Peter Deuflhard, Bodo Erdmann | Affine conjugate adaptive Newton methods for nonlinear elastomechanics | Opt. Meth. Softw., 22(3), pp. 413-431, 2007 (preprint available as ZIB-Report 04-01) |
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Anton Schiela | An Interior Point Method in Function Space for the Efficient Solution of State Constrained Optimal Control Problems | ZIB-Report 07-44 |
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G. Teschke, R. Ramlau | An Iterative Algorithm for Nonlinear InverseProblems with Joint Sparsity Constraints in Vector Valued Regimes and an Application to Color Image Inpainting | under review, 2007 |
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P. Iedema, Michael Wulkow, H. Hoefsloot | Conditional Monte Carlo sampling to find branching architectures of polymers from radical polymerizations with transfer to polymer and recombination termination | Polymer, 48(6), pp. 1770-1784, 2007 |
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Marcus Weber | Conformation-based transition state theory | ZIB-Report 07-18 |
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Achim Schädle, Lin Zschiedrich, Sven Burger, Roland Klose, Frank Schmidt | Domain Decomposition Method for Maxwell’s Equations | J. Comput. Phys., Vol.226, pp. 477-493, 2007 (preprint available as ZIB-Report 06-04) |
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Sven Burger, Lin Zschiedrich, Frank Schmidt, Roderick Köhle, Bernd Küchler, Christoph Nölscher | EMF Simulations of Isolated and Periodic 3D Photomask Patterns | Photomask Technology, p. 6630, Vol.6730, 2007 |
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Bodo Erdmann, M. Ljubijankic, C. Nytsch-Geusen | Entwicklung einer Toolbox zur zwei- und dreidimensionalen instationären thermischen Bauteilsimulation mit KARDOS | Bauphsik, 29(1), pp. 33-39, 2007 |
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Jan Pomplun, Ronald Holzlöhner, Sven Burger, Lin Zschiedrich, Frank Schmidt | FEM investigation of leaky modes in hollow core photonic crystal fibers | Proc. SPIE, Photonic Crystal Materials and Devices VI, Ali Adibi, Axel Scherer, Shawn-Yu Lin (Eds.), p. 64800M, Vol.6480, 2007 |
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Jan Pomplun, Sven Burger, Frank Schmidt, Frank Scholze, Christian Laubis, Uwe Dersch | Finite element analysis of EUV lithography | Modeling Aspects in Optical Metrology, Harald Bosse (Ed.), p. 661718, Vol.6617, 2007 |
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Jan Pomplun, Lin Zschiedrich, Roland Klose, Frank Schmidt, Sven Burger | Finite element simulation of radiation losses in photonic crystal fibers | phys. stat. sol. (a), 204(11), pp. 3822-3837, 2007 |
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S. Dahlke, G. Steidl, G. Teschke | Frames and Coorbit Theory on Homogeneous Spaces with a Special Guidance on the Sphere | Special Issue, 2007 |
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R. Grosch, Heiko Briesen, Michael Wulkow, Wolfgang Marquardt | Generalization and numerical investigation of QMOM for crystallization processes | AIChE J., Vol.53, pp. 207-227, 2007 |
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Lin Zschiedrich, Sven Burger, Jan Pomplun, Frank Schmidt | Goal oriented adaptive finite element method for precise simulation of optical components | Proc. SPIE, Integrated Optics, Y. Sidorin, Ch. Waechter (Eds.), p. 64750H, Vol.6475, 2007 |
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Martin Weiser, Peter Deuflhard | Inexact central path following algorithms for optimal control problems | SIAM J. Control Opt., 46(3), pp. 792-815, 2007 (preprint available as ) |
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I. Daubechies, G. Teschke, Luminita Vese | Iteratively solving linear inverse problems with general convex constraints | InverseProblems and Imaging, 1(1), pp. 29-46, 2007 |
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G. J. Pearce, G. S. Wiederhecker, Christopher G. Poulton, Sven Burger, P. St. J. Russell | Models for guidance in kagome-structured hollow-core photonic crystal fibres | Optics Express, Vol.15, p. 12680, 2007 |
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G. Teschke | Multi-Frame Representations in Linear InverseProblems with Mixed Multi-Constraints | Applied and Computational Harmonic Analysis, Vol.22, pp. 43-60, 2007 |
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G. Dolling, M. Klein, M. Wegener, Achim Schädle, Sven Burger, S. Linden | Negative beam displacement for negative-index photonic metamaterials | Optics Express, 15(21), pp. 14219-14227, 2007 |
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Christian Meyer, Uwe Prüfert, Fredi Tröltzsch | On two numerical methods for state-constrained elliptic control problems | Optimization Methods and Software, 22(6), pp. 871-899, 2007 |
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Anton Schiela | Optimality Conditions for Convex State Constrained Optimal Control Problems with Discontinuous States | ZIB-Report 07-35 |
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Peter Deuflhard | Painters, Murderers, Mathematicians | Mathematics and Culture in Europe. Mathematics in Art, Technology, Cinema, and Theatre, Springer-Verlag, pp. 141-152, 2007 |
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Susanne Gerber | Perfusionsmodellierung in menschlichen Tumoren | Master's thesis, Freie Universität Berlin, 2007 |
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S. Dahlke, Peter Maass, G. Teschke | Reconstruction of Reflectivity Densities by Wavelet Transforms | Technical Report 01-10, ISSN 1435-7968, 2007 |
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A. Gürler, Sebastian Moll, Marcus Weber, Holger Meyer, Frank Cordes | Selection and flexible optimization of binding modes from conformation ensembles | Biosystems, 2007 |
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T. Pollok | Separabilität von Helmholtz- und Maxwellgleichungen über unbeschränkten heterogenen Gebieten | Master's thesis, Freie Universität Berlin, 2007 |
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S. Dahlke, Gitta Kutyniok, G. Steidl, G. Teschke | Shearlet coorbit spaces and associated Banach frames | Bericht Nr. 2007-5, Philipps-Universität Marburg, 2007 |
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A. Wix, Karlheinz Schaber, O. Ofenloch, Rainald Ehrig, Peter Deuflhard | Simulation of Aerosol Formation in Gas-Liquid Contact Devices | Chem. Eng. Comm., Vol.194, pp. 565-577, 2007 |
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O. Scharkoi | Simulation von Opioiden unter Hinzunahme von Temperatur und pH-Wert | Bachelor's thesis, Freie Universität Berlin, Bioinformatik, 2007 |
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Konstantin Fackeldey, Rolf Krause | Solving Frictional Contact Problems with Multigrid Efficiency | Proc.of the 16th International Conference on Domain Decomposition Methods, Olof Widlund (Ed.), pp. 547-554, Vol.50, Lecture Notes in Computational Science and Engineering, 2007 |
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Marcus Weber, Susanna Kube, Lionel Walter, Peter Deuflhard | Stable Computation of Probability Densities of Metastable Dynamical Systems | SIAM J. Multiscale Model. Simul., 6(2), pp. 396-416, 2007 |
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Karsten Andrae, P.-G. Reinhard, E. Suraud | Systematics of spin-polarized small Na clusters | Annals of the European Academy of Science, 2007 |
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S. Dahlke, Dirk A. Lorenz, Peter Maass, C. Sagiv, G. Teschke | The Canonical Coherent states associated with Quotients of the Affine Weyl–Heisenberg Group | to appear, 2007 |
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Frank Scholze, Christian Laubis, Uwe Dersch, Jan Pomplun, Sven Burger, Frank Schmidt | The influence of line edge roughness and CD uniformity on EUV scatterometry for CD characterization of EUV masks | Modeling Aspects in Optical Metrology, Harald Bosse (Ed.), p. 66171A, Vol.6617, 2007 |
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Achim Schädle, Daniel Ruprecht, Frank Schmidt | Transparent boundary conditions - the pole condition approach | Proceedings of Waves 2007, N. Biggs et.al. (Ed.), pp. 301-303, 2007 |
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C. Förster, Arnd B. E. Brauer, J. Fürste, C. Betzel, Marcus Weber, Frank Cordes, V. Erdmann | Visualization of the tRNA(Ser) acceptor step binding site in the seryl-tRNA synthetase | BBRC, 362(2), pp. 415-418, 2007 |
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R. Kellermann, Marcus Weber, Alexander Bujotzek | Vom Dietrich zum Sicherheitsschlüssel – Mathematiker des Matheon simulieren neuen Wirkstoff für die Diabetes-Behandlung | DFG-Forschungszentrum Matheon, 2007 |
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Konstantin Fackeldey, Rolf Krause | Weak coupling in function space | Proc. Appl. Math. Mech., p. 2020113pp, 7(1), 2007 |
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2006 |
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G. Teschke, U. Görsdorf, P. Körner, D. Trede | A New Approach for Target Classification in Ka-Band Radar Data | Proc. ERAD Barcelona, 2006 |
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Rainald Ehrig, William R. Taylor, G. Duda, Markus O. Heller | A New Approach for the Determination of Joint Axes | Proceedings of the 52th Annual Meeting of the Orthopedic Society, 2006 |
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R. Ramlau, G. Teschke | A Projection Iteration for Nonlinear Operator Equations with Sparsity Constraints | Numerische Mathematik, Vol.104, pp. 177-203, 2006 |
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Rainald Ehrig, William R. Taylor, G. Duda, Markus O. Heller | A Survey for Formal Methods for Determining the Centre of Ball Joints | Journal of Biomechanics, pp. 2798-2809, 2006 |
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Nelson Faustino, U. Kaehler, G. Teschke | A Wavelet Galerkin Scheme for the Navier Stokes Equations | under review, 2006 |
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Lin Zschiedrich, Roland Klose, Achim Schädle, Frank Schmidt | A new finite element realization of the Perfectly Matched Layer Method for Helmholtz scattering problems on polygonal domains in 2D | J. Comput. Appl. Math., Vol.188, pp. 12-32, 2006 (preprint available as ZIB-Report 03-44) |
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G. Teschke | A new frame-based statistical strategy for bird migration clutter removal in wind profiler radar data | preprint, 2006 |
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V. Lehmann, G. Teschke | A new intermittent clutter filtering algorithm for radar wind profiler | Proc. ISTP Boulder, 2006 |
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Maria Lopez-Fernandez, Cesar Palencia, Achim Schädle | A spectral order method for inverting sectorial Laplace transforms | SIAM J. Numer. Anal., 44(3), pp. 1332-1350, 2006 (preprint available as ZIB-Report 05-26) |
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Alexander Riemer | Accuracy, Stability, Convergence of Rigorous Thermodynamic Sampling Methods | Master's thesis, 2006 |
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Alexander Riemer | Accuracy, stability, convergence of rigorous thermodynamic sampling methods | Master's thesis, Freie Universität Berlin, department of bioinformatics, 2006 |
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Sven Burger, Roland Klose, Achim Schädle, Frank Schmidt, Lin Zschiedrich | Adaptive FEM solver for the computation of electromagnetic eigenmodes in 3D photonic crystal structures | Scientific Computing in Electrical Engineering, Springer Verlag, pp. 169-175, 2006 |
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Piero Colli Franzone, Peter Deuflhard, Bodo Erdmann, Jens Lang, Luca Franco Pavarino | Adaptivity in Space and Time for Reaction-Diffusion Systems in Electrocardiology | SIAM J. Sc. Comp., Vol.28, pp. 942-962, 2006 (preprint available as ZIB-Report 05-30) |
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Sven Burger, Achim Schädle, Lin Zschiedrich, Frank Schmidt | Advanced FEM Analysis of Nano-Optical Devices | Nanophotonics, David L. Andrews, Jean-Michel Nunzi, Andreas Ostendorf (Eds.), pp. 72-82, Vol.6195, 2006 |
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Sven Burger, Lin Zschiedrich, Achim Schädle, Roland Klose, Benjamin Kettner, Jan Pomplun, T. Pollok, Frank Schmidt | Advanced FEM Analysis of Nano-Optical Devices | Proc. Symposium on Photonics Technologies for the 7th Framework Programme, 2006 |
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Lin Zschiedrich, Sven Burger, Benjamin Kettner, Frank Schmidt | Advanced Finite Element Method for Nano-Resonators | Proc. SPIE, p. 611515, Vol.6115, 2006 |
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DOI arXiv |
Marcus Weber, Wasinee Rungsarityotin, Alexander Schliep | An Indicator for the Number of Clusters | From Data and Information Analysis to Knowledge Engineering, Myra Spiliopoulou, Rudolf Kruse, Christian Borgelt, Andreas Nürnberger, Wolfgang Gaul (Eds.), Springer Berlin Heidelberg, pp. 103-110, 2006 |
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Johanna Gellermann, Mirko Weihrauch, C. Cho, Waldemar Wlodarczyk, Horst Fähling, Roland Felix, Volker Budach, Martin Weiser, Johanna Nadobny, Peter Wust | Comparison of MR-thermography and planning calculations in phantoms | Medical Physics, Vol.33, pp. 3912-3920, 2006 |
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William R. Taylor, Christian König, A. Speirs, Rainald Ehrig, G. Duda, Markus O. Heller | Die medio-laterale Kraftverteilung im Schafsknie | Deutscher Kongress für Orthpädie und Unfallchirurgie, Berlin, 2006 |
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Lin Zschiedrich, Reinhard März, Sven Burger, Frank Schmidt | Efficient 3D Finite Element Simulation of Fiber-Chip Coupling | Integrated Photonics Research and Applications/Nanophotonics, p. ITuF1, 2006 |
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Ronald Holzlöhner, Sven Burger, P. Roberts, Jan Pomplun | Efficient optimization of hollow-core photonic crystal fiber design using the finite-element method | J. Eur. Opt. Soc.-Rapid, Vol.1, p. 06011, 2006 |
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Benjamin Kettner | Ein Algorithmus zur prismatoidalen Diskretisierung von unbeschränkten Außenräumen in 2D und 3D unter Einhaltung von Nebenbedingungen | Master's thesis, Freie Universität Berlin, 2006 |
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M. Holschneider, G. Teschke | Existence and Computation of Optimally Localized Coherent States | Journal of Mathematical Physics, Vol.47, p. 123503, 2006 |
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Achim Schädle, María López-Fernández, Christian Lubich | Fast and oblivious convolution quadrature | SIAM J. Sci. Comput., 28(2), pp. 421-438, 2006 (preprint available as ZIB-Report 05-09) |
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G. Teschke | Frames, Sparsity, and Nonlinear InverseProblems | Oberwolfach Reports, 2006 |
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Peter Deuflhard, Martin Weiser, Stefan Zachow | Mathematics in Facial Surgery | AMS Notices, 53(9), pp. 1012-1016, 2006 |
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Marcus Weber | Meshless Methods in Confirmation Dynamics | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard, M. Dellnitz (Advisors), 2006 |
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Marcus Weber | Meshless Methods in Conformation Dynamics | Doctoral thesis, Freie Universität Berlin, department of mathematics, 2006 |
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D. Michaelis, Christoph Wächter, Sven Burger, Lin Zschiedrich, Andreas Bräuer | Micro-optically assisted high index waveguide coupling | Appl. Opt., Vol.45, pp. 1831-1838, 2006 |
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Peter Deuflhard | Newton Methods for Nonlinear Problems. Affine Invariance and Adaptive Algorithms | Springer, 2006 |
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G. Dolling, M. Wegener, Achim Schädle, Sven Burger, S. Linden | Observation of magnetization waves in negative-index photonic metamaterials | Appl. Phys. Lett., Vol.89, p. 231118, 2006 |
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S. Linden, Christian Enkrich, G. Dolling, M. Klein, J. Zhou, T. Koschny, C. Soukoulis, Sven Burger, Frank Schmidt, M. Wegener | Photonic metamaterials: Magnetism at Optical Frequencies | IEEE Journal of Selected Topics in Quantum Electronics, 12(6), pp. 1097-1105, 2006 |
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Karsten Andrae, P. Dinh, P.-G. Reinhard, E. Suraud | Pump and probe analysis of metal cluster dynamics | Computational Materials Science, 35(3), pp. 169-173, 2006 |
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Jan Pomplun, Sven Burger, Frank Schmidt, Lin Zschiedrich, Frank Scholze | Rigorous FEM-Simulation of EUV-Masks: Influence of shape and material parameters | Photomask Technology, P. Martin, R. Naber (Eds.), p. 63493D, Vol.6349, 2006 |
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Jan Pomplun | Rigorous FEM-Simulation of Maxwell’s Equations for EUV-Lithography | Master's thesis, Technische Universität Berlin, 2006 |
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Sven Burger, Roderick Köhle, Lin Zschiedrich, H. Nguyen, Frank Schmidt, Reinhard März, Christoph Nölscher | Rigorous Simulation of 3D Masks | Photomask Technology, P. Martin, R. Naber (Eds.), p. 63494Z, Vol.6349, 2006 |
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Tobias Gänzler, S. Volkwein, Martin Weiser | SQP methods for parameter identification problems arising in hyperthermia | Optim. Methods Softw., 21(6), pp. 869-887, 2006 |
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A. Gürler | Selection and flexible optimization of binding modes from conformation ensembles. | Master's thesis, Freie Universität Berlin, department of bioinformatics, 2006 |
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Anton Schiela | The Control Reduced Interior Point Method. A Function Space Oriented Algorithmic Approach | Doctoral thesis, FU Berlin, 2006 |
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William R. Taylor, Rainald Ehrig, G. Duda, Markus O. Heller | The Symmetrical Axis of Rotation Approach (SARA) for Determination of Joint Axes in Clinical Gait Analysis | 1st Joint ESMAC-GCMAS Meeting, Amsterdam, 2006 |
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S. Dahlke, Gitta Kutyniok, Peter Maass, C. Sagiv, H.-G. Stark, G. Teschke | The Uncertainty Principle Associated with the Continuous Shearlet Transform | to appear, 2006 |
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William R. Taylor, Rainald Ehrig, G. Duda, Markus O. Heller | The determination of joint axes | 5. World Congress of Biomechanics, Munich, Journal of Biomechanics, pp. S571-S572, 2006 |
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William R. Taylor, Christian König, A. Speirs, Rainald Ehrig, G. Duda, Markus O. Heller | The medio-lateral force distribution in the sheep knee during walking | 5. World Congress of Biomechanics, Munich, Journal of Biomechanics, p. S491, 2006 |
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Wilhelm Huisinga, R. Telgmann, Michael Wulkow | The virtual lab approach to pharmacokinetic | Drug Discov Today, Vol.11, pp. 800-805, 2006 |
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William R. Taylor, Rainald Ehrig, Markus O. Heller, H. Schell, P. Seebeck, G. Duda | Tibio-femoral Joint Contact Forces in Sheep | Journal of Biomechanics, pp. 791-798, 2006 |
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M. Rätsch, S. Romdhani, G. Teschke, T. Vetter | Wavelet Frame Accelerated Reduced Support Vector Machine | to appaer in:, 2006 |
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2005 |
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X. Reynhout, J. Meuldijk, B. Drinkenburg, P. Iedema, Michael Wulkow | A Novel Method to Model Emulsion Polymerization Kinetics | Polymer-Plastics Tech. Eng., 44(4), pp. 707-740, 2005 |
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Roland Klose, Sven Burger, Frank Schmidt, Lin Zschiedrich | A multilevel method for the computation of eigenmodes in 3D photonic crystals | Proceedings of the 5th International Conference on Numerical Simulation of Optoelectronic Devices, pp. 61-62, 2005 |
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A. Muschinski, V. Lehmann, L. Justen, G. Teschke | Advanced Radar Wind Profiling | Meteorologische Zeitschrift, 5(14), pp. 609-626, 2005 |
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I. Sim | Analysis und Numerik der Resonanzen des Schrödinger-Operators in 1D | Master's thesis, U Hamburg, 2005 |
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William R. Taylor, Rainald Ehrig, Markus O. Heller, H. Schell, P. Seebeck, G. Duda | Animal Models for Knee Injury Frequently Underestimate the Mechanical Conditions of the Clinical Situation | Proceedings of the 51th Annual Meeting of the Orthopedic Society, 2005 |
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Martin Weiser, Anton Schiela, Peter Deuflhard | Asymptotic Mesh Independence of Newton’s Method Revisited | SIAM J. Num. Anal., 42(5), pp. 1830-1845, 2005 (preprint available as ZIB-Report 03-13) |
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Sven Burger, Roderick Köhle, Lin Zschiedrich, W. Gao, Frank Schmidt, Reinhard März, Christoph Nölscher | Benchmark of FEM, Waveguide and FDTD Algorithms for Rigorous Mask Simulation | Photomask Technology, J. Weed, P. Martin (Eds.), pp. 378-389, Vol.5992, 2005 |
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C. Kober, Bodo Erdmann, Christian Hellmich, Robert Sader, Hans-Florian Zeilhofer | Consideration of Bone Inhomogeneity and Anisotropy in Deformation Analysis of a Human Mandible | Proc. of BMT2005, 39th Annual Congress of the German Society of Biomedical Engineering, Nuremberg, Germany, U. Boenick, A. Bolz (Eds.), pp. 814-815, Vol.1, 2005 |
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G. Teschke | Construction of Generalized Uncertainty Principles and Wavelets in Bessel Potential Spaces | International Journal of Wavelets, Multiresolution and Information Processing, 3(2), pp. 189-209, 2005 |
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Christian-Ulrich Schmidt, Markus Busch, Dieter Lilge, Michael Wulkow | Detailed Molecular Structure Modeling – A Path Forward to Designing Application Properties of ldPE | Macromolecular Materials and Engineering, Vol.290, p. 404, 2005 |
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Lin Zschiedrich, Sven Burger, Achim Schädle, Frank Schmidt | Domain decomposition method for electromagnetic scattering problems: application to EUV lithography | Proceedings of the 5th International Conference on Numerical Simulation of Optoelectronic devices, pp. 55-56, 2005 |
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Sven Burger, Roland Klose, Achim Schädle, Frank Schmidt, Lin Zschiedrich | FEM modelling of 3D photonic crystals and photonic crystal waveguides | Integrated Optics : Devices, Materials and Technologies IX, Y. Sidorin, Christoph Wächter (Eds.), pp. 164-173, Vol.5728, 2005 |
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Maria López-Fernández, Christian Lubich, Cesar Palencia, Achim Schädle | Fast Runge-Kutta approximation of inhomogeneous parabolic equations | Numer. Math., Vol.102, pp. 277-291, 2005 (preprint available as ) |
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Frank Schmidt, Sven Burger, Achim Schädle, Roland Klose | Finite element methods for optical device design | Proceedings of the 5th International Conference on Numerical Simulation of Optoelectronic devices, pp. 57-58, 2005 |
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S. Dahlke, M. Fornasier, H. Rauhut, G. Steidl, G. Teschke | Generalized Coorbit Theory, Banach Frames, and the Relations to α–Modulation Spaces | under review, 2005 |
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C. Kober, Bodo Erdmann, Christian Hellmich, M. Geiger, Robert Sader, Hans-Florian Zeilhofer | How does the periodontal ligament influence overall stress/strain profiles of a partially edentulous mandible? | Proc. of 8th Int. Conference on Biological Mechanisms of Tooth Eruption, Resorption and Movement, Phuket, Thailand, Z. Davidovitch, J. Mah, S. Suthanarak (Eds.), 2005 |
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Martin Weiser | Interior point methods in function space | SIAM J. Control Optimization, 44(5), pp. 1766-1786, 2005 (preprint available as ZIB-Report 03-35) |
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Lin Zschiedrich, Sven Burger, Roland Klose, Achim Schädle, Frank Schmidt | JCMmode: an adaptive finite element solver for the computation of leaky modes | Integrated Optics: Devices, Materials, and Technologies IX, Y. Sidorin, Christoph Wächter (Eds.), pp. 192-202, Vol.5728, 2005 |
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Daniel Ruprecht | Konstruktion transparenter Randbedingungen für die Wellengleichung mit Hilfe der Polbedingung | Master's thesis, Freie Universität Berlin, 2005 |
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Christian Enkrich, M. Wegener, S. Linden, Sven Burger, Lin Zschiedrich, Frank Schmidt, C. Zhou, T. Koschny, C. Soukoulis | Magnetic metamaterials at telecommunication and visible frequencies | Phys. Rev. Lett., Vol.95, p. 203901, 2005 |
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DOI arXiv |
G. Teschke | Multi-Frames in Thresholding Iterations for Nonlinear Operator Equations with Mixed Sparsity Constraints | DFG-SPP-1114 preprint 131, 2005 |
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Markus O. Heller, Georg Duda, Rainald Ehrig, H. Schell, P. Seebeck, William R. Taylor | Muskuloskeletale Belastungen im Schafshinterlauf | Materialwissenschaft und Werkstofftechnik, pp. 775-780, 2005 |
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Sven Burger, Lin Zschiedrich, Roland Klose, Achim Schädle, Frank Schmidt, Christian Enkrich, S. Linden, M. Wegener, C. Soukoulis | Numerical Investigation of Light Scattering off Split-Ring Resonators | Metamaterials, T. Szoplik, E. Özbay, C. Soukoulis, N. Zheludev (Eds.), pp. 18-26, Vol.5955, 2005 |
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Ch. Marwitz | Numerische Berechnung von modifizierten Blochmoden in der Bandlücke periodischer Strukturen | Master's thesis, Technische Universität Berlin, 2005 |
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William R. Taylor, Rainald Ehrig, Markus O. Heller, H. Schell, P. Klein, G. Duda | On the Influence of Soft Tissue Coverage in the Determination of Bone Kinematics using Bone Markers | Journal of Orthopedic Research, pp. 726-734, 2005 |
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G. Teschke | Operator Equations, Mixed Constraints, Frame Based Iterative Concepts and Application | Habilitation thesis, Bremen, 2005 |
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T. Kalkbrenner, U. Hakanson, Achim Schädle, Sven Burger, C. Henkel, V. Sandoghdar | Optical microscopy using the spectral modifications of a nano-antenna | Phys. Rev. Lett., Vol.95, p. 200801, 2005 |
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M. Rätsch, S. Romdhani, G. Teschke, T. Vetter | Overcomplete Wavelet Approximation of a Support Vector Machine for Efficient Classification | Springer Lecture Notes in Computer Science, p. 351ff, 2005 |
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Marcus Weber, Susanna Kube | Robust Perron Cluster Analysis for Various Applications in Computational Life Science | Computational Life Sciences, pp. 57-66, 2005 |
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Peter Deuflhard, Marcus Weber | Robust Perron Cluster Analysis in Conformation Dynamics | Lin. Alg. Appl. – Special Issue on Matrices and Mathematical Biology, Elsevier Journals: Germany, pp. 161-184, 2005 (preprint available as ) |
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H. Horn, Michael Wulkow | Simulation von Wachstum und Abtrag der Biomasse – Eine exemplarische Betrachtung für eine 2D-Modellierung | Chem. Ing. Technik, 77(4), pp. 418-424, 2005 |
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Stefan Zachow, Martin Weiser, Hans-Christian Hege, Peter Deuflhard | Soft Tissue Prediction in Computer Assisted Maxillofacial Surgery Planning | Biomechanics Applied to Computer Assisted Surgery, Y. Payan (Ed.), Research Signpost, pp. 277-298, 2005 |
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C. Kober, Bodo Erdmann, Christian Hellmich, Robert Sader, Hans-Florian Zeilhofer | The Influence of the Periodontal Ligament on Overall Stress/Strain Profiles of a Human Mandible | Proc. of 23rd CADFEM Users’ Meeting, Int. Congress on FEM Technology, Biomechanics, Grafing CADFEM GmbH (Ed.), pp. 1-10, 2005 |
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William R. Taylor, J.-P. Kassi, J. Schwarzkopf, Rainald Ehrig, H. Schell, G. Duda | The Profile of Mechanical Loading is Independent of Fracture Fixation Principle | Proceedings of the 51th Annual Meeting of the Orthopedic Society, 2005 |
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R. Ramlau, G. Teschke | Tikhonov Replacement Functionals for Iteratively Solving Nonlinear Operator Equations | InverseProblems, Vol.21, pp. 1571-1592, 2005 |
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Markus O. Heller, G. Duda, Christian König, William R. Taylor, Rainald Ehrig, S. Hinterwimmer, H. Graichen | Validation of a New Model of Human Knee Kinematics against in Vivo Data under Physiologic Neuromuscular Activation Patterns | Proceedings of the 51th Annual Meeting of the Orthopedic Society, 2005 |
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I. Daubechies, G. Teschke | Variational image restoration by means of wavelets | Applied and Computational Harmonic Analysis, 19(1), pp. 1-16, 2005 |
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2004 |
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Hans Lamecker, Martin Seebaß, Hans-Christian Hege, Peter Deuflhard | A 3d statistical shape model of the pelvic bone for segmentation | Proc. SPIE Medical Imaging 2004, J. Fitzpatrick, Milan Sonka (Eds.), pp. 1341-1351, Vol.5370, 2004 |
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P. Cerejeiras, S. Dahlke, M. Soares, U. Kaehler, M. Lindemann, G. Teschke, M. Zhariy | A Wavelet Based Numerical Method for Nonlinear Elliptic Partial Differential Equations | IKM Proceedings, 2004 |
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M. Soares, G. Teschke, M. Zhariy | A Wavelet Regularization for Nonlinear Diffusion Equations | Technical Report 04-12, ISSN 1435-7968, 2004 |
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P. Cerejeiras, S. Dahlke, M. Soares, U. Kaehler, M. Lindemann, G. Teschke, M. Zhariy | A Wavelet-Galerkin Scheme for Nonlinear Elliptic Partial Differential Equations | in preparation, 2004 |
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Evgeny Gladilin | A contour based approach for invariant shape description | SPIE Medical Imaging Conference, pp. 1282-1291, Vol.5370, 2004 |
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Kristian Bredies, Dirk A. Lorenz, Peter Maass, G. Teschke | A partial differential equation for continuous non-linear shrinkage filtering and its application for analyzing MMG data | Proc. SPIE Vol. 5266, p. 84-93, Wavelet Applications in Industrial Processing; Frederic Truchetet; Ed., 2004 |
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Stefan Zachow, Thomas Hierl, Bodo Erdmann | A quantitative evaluation of 3D soft tissue prediction in maxillofacial surgery planning | Proc. 3. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboter-assistierte Chirurgie e.V., 2004 |
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C. Kober, Bodo Erdmann, Jens Lang, Robert Sader, Hans-Florian Zeilhofer | Adaptive Finite Element Simulation of the Human Mandible Using a New Physiological Model of the Masticatory Muscles | Proc. of 75th Annual Meeting of the GAMM, pp. 332-333, 4(1), PAMM, 2004 (preprint available as ZIB-Report 04-16) |
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Karlheinz Schaber, Oliver Ofenloch, Rainald Ehrig, Peter Deuflhard | Aerosolbildung in Gas/Flüssigkeits-Kontaktapparaten - Modellierungsstrategien und Simulation | Chemie Ingenieur Technik, 76(9), pp. 1358-1359, 2004 |
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C. Kober, Bodo Erdmann, Christian Hellmich, Robert Sader, Hans-Florian Zeilhofer | Anisotropic Simulation of the Human Mandible | Proc. of 17th ASCE Engineering Mechanics Conference, 2004 (preprint available as ZIB-Report 04-12) |
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William R. Taylor, Rainald Ehrig, Markus O. Heller, H. Schell, G. Duda | Can Skin Markers Determine the Kinematics of Underlying Bones? | Proceedings of the 50th Annual Meeting of the Orthopedic Society, 2004 |
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S. Dahlke, G. Steidl, G. Teschke | Coorbit Spaces and Banach Frames on Homogeneous Spaces with Applications to Analyzing Functions on Spheres | Adv. Comput.Math., 1-2(21), pp. 147-180, 2004 |
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Karsten Andrae, P.-G. Reinhard, E. Suraud | Crossed Beam Pump and Probe Dynamics in Metal Clusters | Phys. Rev. Lett., 92(17), p. 173402, 2004 |
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Sven Burger, Roland Klose, Reinhard März, Achim Schädle, Frank Schmidt, Lin Zschiedrich | Efficient Finite Element Methods for the Design of Microoptical Components | Proc. Microoptics Conf. 2004, 2004 |
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Martin Weiser, Anton Schiela | Function space interior point methods for PDE constrained optimization | PAMM, 4(1), pp. 43-46, 2004 (preprint available as ZIB-Report 04-27) |
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Reinhard März, Sven Burger, A. Forchel, H. Heidrich, O. Hess, D. Michaelis, K. Wandel, R. Wehrspohn | High-contrast planar photonic crystals | Nanophotonics for Communication, M. Lipson (Ed.), pp. 68-81, Vol.5597, 2004 |
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Michael Wulkow, Markus Busch, Thomas P. Davis, Christopher Barner-Kowollik | Implementing the Reversible Addition Fragmentation Chain Transfer (RAFT) Process in Predici. | Journal of Polymer Science, Vol.42, p. 1441, 2004 |
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S. Dahlke, Peter Maass, G. Teschke | Interpolating Scaling Functions with Duals | Journal of Computational Analysis and Applications, 1(6), pp. 19-29, 2004 |
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Peter Deuflhard, Christof Schütte | Molecular Conformation Dynamics and Computational Drug Design | Applied Mathematics Entering the 21st Century, James Hill, Ross Moore (Eds.), pp. 91-119, proceedings in Applied Mathematics, 2004 (preprint available as ) |
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Reinhard Hochmuth, Peter Deuflhard | Multiscale Analysis for the Bio-Heat-Transfer Equation - The Nonisolated Case | Mathematical Models and Methods in Applied Sciences (M$^3$AS), 14(11), pp. 1621-1634, 2004 |
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Peter Deuflhard, Reinhard Hochmuth | Multiscale analysis of thermoregulation in the human microvascular system | Math. Methods Appl. Sci., 27(8), pp. 971-989, 2004 (preprint available as ZIB-Report 02-31) |
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Peter Deuflhard | Newton Methods for Nonlinear Problems. Affine Invariance and Adaptive Algorithms | Springer, 2004 |
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S. Volkwein, Martin Weiser | Optimality Conditions for a Constrained Parameter Identification Problem in Hyperthermia | 2004 |
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Reinhard März, Sven Burger, S. Golka, A. Forchel, Christian Herrmann, C. Jamois, D. Michaelis, K. Wandel | Planar High Index-Contrast Photonic Crystals for Telecom Applications | Photonic Crystals - Advances in Design, Fabrication and Characterization, Wiley-VCH, pp. 308-329, 2004 |
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Frank Schmidt | Pole Condition: A new Approach to Solve Scattering Problems | Oberwolfach Report, 1(1), pp. 615-617, 2004 |
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S. Dahlke, Peter Maass, G. Teschke | Reconstruction of Reflectivity Densities in a Narrowband Regime | IEEE Transactions on Antennas and Propagation, 52(6), pp. 1603-1606, 2004 |
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R. Ramlau, G. Teschke | Regularization of Sobolev Embedding Operators and Applications Part I | Sampling Theory in Signal and Image Processing, 3(2), pp. 175-196, 2004 |
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R. Ramlau, G. Teschke | Regularization of Sobolev Embedding Operators and Applications Part II | Sampling Theory in Signal and Image Processing, 3(3), pp. 225-246, 2004 |
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Martin Schlegel, Wolfgang Marquardt, Rainald Ehrig, Ulrich Nowak | Sensitivity analysis of linearly-implicit differential-algebraic systems by one-step extrapolation | Applied Numerical Mathematics, pp. 83-102, 2004 (preprint available as ) |
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C. Kober, Bodo Erdmann, Jens Lang, Robert Sader, Hans-Florian Zeilhofer | Sensitivity of the Temporomandibular Joint Capsule for the Structural Behaviour of the Human Mandible | Proc. BMT 2004, pp. 372-373, Vol.49-2, Biomedizinische Technik, 2004 |
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Hans Lamecker, Martin Seebass, Thomas Lange, Hans-Christian Hege, Peter Deuflhard | Visualization of the variability of 3D statistical shape models by animation | Proc. Medicine Meets Virtual Reality, J. Westwood (Ed.), pp. 190-196, Vol.98, Studies in Health Technologies and Informatics, 2004 |
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L. Justen, G. Teschke, V. Lehmann | Wavelet-based methods for clutter removal from radar wind profiler data | Proc. SPIE Vol. 5266, p. 157-168, Wavelet Applications in Industrial Processing; Frederic Truchetet; Ed., 2004 |
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I. Daubechies, G. Teschke | Wavelet–based image decomposition by variational functionals | Proc. SPIE Vol. 5266, p. 94-105, Wavelet Applications in Industrial Processing; Frederic Truchetet; Ed., 2004 |
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S. Dahlke, G. Steidl, G. Teschke | Weighted Coorbit Spaces and Banach Frames on Homogeneous Spaces | Journal of Fourier Analysis and Applications, 5(10), pp. 507-539, 2004 |
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J.-P. Kassi, William R. Taylor, J. Schwarzkopf, H. Schell, G. Duda, Rainald Ehrig | Wie sind Osteosynthesesysteme und Defektzonen in vivo belastet? | 68. Jahrestagung der Deutschen Gesellschaft für Unfallchirurgie in Verbindung mit dem Deutschen Orthopädenkongress, 2004 |
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Peter Deuflhard | bookreview | Annual Report DMV, Vol.106, p. 43, 2004 |
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2003 |
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Johanna Nadobny, Dennis Sullivan, Waldemar Wlodarczyk, Peter Deuflhard, Peter Wust | A 3-D Tensor FDTD-Formulation for Treatment of Sloped Interfaces in Electrically Inhomogeneous Media | IEEE Transactions on Antennas and Propagation, 51(8), pp. 1760-1770, 2003 |
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Peter Deuflhard | A Comparison of Related Concepts in Computational Chemistry and Mathematics | Chemisty and Mathematics, pp. 51-66, 2003 (preprint available as ZIB-Report 02-46) |
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Johanna Nadobny, R. Pontalti, Dennis Sullivan, Waldemar Wlodarczyk, A. Vaccari, Peter Deuflhard, Peter Wust | A Thin-Rod Approximation for the Improved Modeling of Bare and Insulated Cylindrical Antennas Using the FDTD Method | IEEE Transactions on Antennas and Propagation, 51(8), pp. 1780-1796, 2003 |
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Sven Burger, Frank Schmidt, Lin Zschiedrich | A fast and efficient Finite-Element Solver for 2D and 3D Photonic Band-Gap Problems | Dig. LEOS/IEEE 2003 Summer Topicals, p. 75, 2003 |
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H. Reuter, G. Krause, Michael Wulkow, A. Mönig, H. Horn | A water quality management tool for river basins | Wat. Sci. Techn., 48(10), pp. 47-53, 2003 |
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Frank Schmidt, T. Friese, Lin Zschiedrich, Peter Deuflhard | Adaptive Multigrid Methods for the Vectorial Maxwell Eigenvalue Problem for Optical Waveguide Design | Mathematics - Key Technology for the Future, Springer, pp. 270-292, 2003 (preprint available as ) |
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C. Kober, Robert Sader, Hans-Florian Zeilhofer, Peter Deuflhard | An Individual Anisotropic and Inhomogeneous Material Description of the Human Mandible | Mathematical Modelling and Computing in Biology and Medicine, Vincenzo Capasso (Ed.), pp. 103-109, 2003 |
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S. Dahlke, V. Lehmann, G. Teschke | Applications of Wavelet Methods to the Analysis of Meteorological Radar Data - An Overview | (invited paper) Arabian Journal of Science and Engineering, 28(1C), pp. 3-44, 2003 |
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C. Kober, Bodo Erdmann, Robert Sader, Hans-Florian Zeilhofer | Belastungssimulation beim menschlichen Biss im Vergleich mit der Dichtestruktur im Unterkieferknochen | Biomedizinische Technik, 48(Ergänzungsband 1), pp. 268-269, 2003 |
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Evgeny Gladilin | Biomechanical Modeling of Soft Tissue and Facial Expressions for Craniofacial Surgery Planning | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2003 |
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G. Sreenivasa, Johanna Gellermann, Johanna Nadobny, P. Schlag, Peter Deuflhard, Roland Felix, Peter Wust | Clinical Use of the Hyperthermia Treatment Planning System Hyperplan to Predict Effectiveness and Toxicity | Int. J. Oncology Biol. Phys., 55(2), pp. 407-419, 2003 |
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Jens Lang, Bodo Erdmann, Cornelia Kober, Peter Deuflhard, Robert Sader, Hans-Florian Zeilhofer | Effiziente und zuverlässige Finite-Elemente-Methoden zur Simulation des menschlichen Unterkiefers | Berichte des IZWR - Interdisziplinäres Zentrum für Wissenschaftliches Rechnen, Walter Alt, Martin Hermann (Eds.), Universität Jena: Germany, pp. 49-57, 2003 |
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Mohammad-Hassan Farshbaf-Shaker | Ein neues Verfahren zur Lösung des Streuproblems der Maxwell-Gleichungen | Master's thesis, 2003 |
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Peter Deuflhard | From Molecular Dynamics to Conformational Dynamics in Drug Design | Trends in Nonlinear Analysis, Markus et al. Kirkilionis (Ed.), Springer Verlag Berlin, pp. 269-288, 2003 (preprint available as ZIB-Report 02-20) |
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Markus Busch, Michael Wulkow | Modellierung differenzierter mikrostruktureller Eigenschaften | Chem. Ing. Tech., Vol.75, p. 1027, 2003 |
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Ralf Hiptmair, Achim Schädle | Non-reflecting boundary conditions for Maxwell’s equations | Computing, 71(3), 2003 |
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Peter Deuflhard, Andreas Hohmann | Numerical analysis in modern scientific computing. An introduction. 2nd revised ed. | New York, NY: Springer, 2003 |
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Reinhard Hochmuth, Peter Deuflhard | On the thermoregulation in the human microvascular system | PAMM, Vol.3, pp. 378-379, 2003 |
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S. Dahlke, Peter Maass, G. Teschke | Reconstruction of Wideband Reflectivity Densities by Wavelet Transforms | Advances in Computational Mathematics, 2-4(18), pp. 189-209, 2003 |
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C. Kober, Bodo Erdmann, Robert Sader, Hans-Florian Zeilhofer | Simulation of the Human Mandible | Proceedings of 10th Workshop on The Finite Element Method in Biomedical Engineering, Biomechanics and Related Fields, 2003 |
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Thorsten Hohage, Frank Schmidt, Lin Zschiedrich | Solving Time-Harmonic Scattering Problems Based on the Pole Condition I: Theory | SIAM J. Math. Anal., 35(1), pp. 183-210, 2003 |
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Thorsten Hohage, Frank Schmidt, Lin Zschiedrich | Solving Time-Harmonic Scattering Problems Based on the Pole Condition II: Convergence of the PML Method | SIAM J. Math. Anal., 35(3), pp. 547-560, 2003 |
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Markus Busch, M. Müller, Michael Wulkow | The use of Simulation Techniques in Developing Kinetic Models for Polymerizations | Chem. Eng. Technol., Vol.26, p. 1031, 2003 |
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2002 |
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Dietrich Braess, Peter Deuflhard, Konstantin Lipnikov | A Subspace Cascadic Multigrid Method for Mortar Elements | Computing, Vol.69, pp. 205-225, 2002 (preprint available as ) |
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Thorsten Hohage, Frank Schmidt, Lin Zschiedrich | A new method for the solution of scattering problems | Proceedings of the JEE’02 Symposium, Bas Michielsen, Francine Decavèle (Eds.), pp. 251-256, 2002 (preprint available as ) |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | A nonlinear elastic soft tissue model for craniofacial surgery simulations | ESAIM, Proc., Vol.12, pp. 61-66, 2002 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | A nonlinear soft tissue model for craniofacial surgery simulations | Proc. of Modeling and Simulation for Computer-aided Medicine and Surgery (MS4CMS, 2002 |
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Tobias Galliat | Adaptive Multilevel Cluster Analysis by Self-Organizing Box Maps | Doctoral thesis, Freie Universität Berlin, Peter Deuflhard (Advisor), 2002 |
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Karlheinz Schaber, Jens Koerber, O. Ofenloch, Rainald Ehrig, Peter Deuflhard | Aerosol Formation in Gas-Liquid Contact Devices- Nucleation, Growth and Particle Dynamics | Chem.Eng.Sci., Vol.57, pp. 4345-4356, 2002 |
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S. Volkwein, Martin Weiser | Affine Invariant Convergence Analysis for Inexact Augmented Lagrangian SQP Methods | SIAM J. Control Optim., 41(3), pp. 875-899, 2002 (preprint available as ZIB-Report 00-56) |
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Tobias Galliat, Peter Deuflhard, Rainer Roitzsch, Frank Cordes | Automatic Identification of Metastable Conformations via Self-Organized Neural Networks | Computational Methods for Macromolecules, T. Schlick, H. Gan (Eds.), Lecture Notes in Computational Science and Engineering, 2002 (preprint available as ) |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Biomechanical modeling of individual facial emotion expressions | Proc. of Visualization, Imaging, and Image Processing (VIIP), pp. 7-11, 2002 |
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Evgeny Gladilin, Stefan Zachow, Peter Deuflhard, Hans-Christian Hege | Biomechanisches Modell zur Abschätzung der individuellen Gesichtsmimik | Proc.of Workshop Bildverarbeitung für die Medizin (BVM), M. Meiler, D. Saupe, F. Krugel, H. Handels, T. Lehmann (Eds.), pp. 25-28, 2002 |
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Bodo Erdmann, C. Kober, Jens Lang, Peter Deuflhard, J. Zeilhofer, Robert Sader | Efficient and Reliable Finite Element Methods for Simulation of the Human Mandible | proceedings of 9th Workshop on The Finite Element Method in Biomedical Engineering, Biomechanics and Related Fields, 2002 (preprint available as ZIB-Report 01-14) |
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Johanna Nadobny, Horst Fähling, M. Hagmann, P. Turner, Waldemar Wlodarczyk, Johanna Gellermann, Peter Deuflhard, Peter Wust | Experimental and numerical investigation of feed-point parameters in a 3-D hyperthermia applicator using different FDTD models of feed networks | IEEE Trans Biomed Eng, 49(11), pp. 1348-1359, 2002 |
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G. Teschke, M. Zhariy, Peter Maass, K. Sassen | Extraction and Analysis of Structural Features in Cloud Radar and Lidar Data Using Wavelet Based Methods | Proceedings of ERAD, 2002 |
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Alexander Fischer, Christof Schütte, Peter Deuflhard, Frank Cordes | Hierarchical Uncoupling-Coupling of Metastable Conformations | Computational Methods for Macromolecules, T. Schlick, H. Gan (Eds.), pp. 235-259, Lecture Notes in Computational Science and Engineering, 2002 (preprint available as ) |
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Martin Weiser | Linear convergence of an interior point method for linear control constrained optimal control problems | ZIB-Report 02-13 |
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Rainald Ehrig, O. Ofenloch, Karlheinz Schaber, Peter Deuflhard | Modelling and Simulation of Aerosol Formation by Heterogeneous Nucleation in Gas-Liquid Contact Devices | Chem.Eng.Sci., 57(7), pp. 1151-1163, 2002 (preprint available as ) |
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Peter Deuflhard, Volker Mehrmann | Numerical analysis and scientific computing in key technologies | pp. 9-19, 2002 |
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Peter Deuflhard, Andreas Hohmann | Numerische Mathematik. I | de Gruyter Lehrbuch. Berlin: de Gruyter, 3, 2002 |
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Peter Deuflhard, Folkmar A. Bornemann | Numerische Mathematik. II | de Gruyter Lehrbuch. Berlin: de Gruyter, 2, 2002 |
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Peter Deuflhard, Folkmar A. Bornemann | Scientific computing with ordinary differential equations. Transl. from the German by Werner C. Rheinboldt | New York, NY: Springer, 2002 |
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Frank Schmidt | Solution of Interior-Exterior Helmholtz-Type Problems Based on the Pole Condition Concept | Doctoral thesis, Free University Berlin, Fachbereich Mathematik und Informatik, 2002 (preprint available as ) |
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David Yevick, T. Friese, Frank Schmidt | A Comparison of Transparent Boundary Conditions for the Fresnel Equation | J. Comput. Phys., 168(2), pp. 433-444, 2001 (preprint available as ) |
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Peter Wust, Horst Fahling, Waldemar Wlodarczyk, Martin Seebass, Johanna Gellermann, Peter Deuflhard, Johanna Nadobny | Antenna arrays in the SIGMA-eye applicator | Med Phys, 28(8), pp. 1793-1805, 2001 |
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S. Kümmel, Karsten Andrae, P.-G. Reinhard | Collectivity in the optical response. of small metal clusters | Applied Physics B, 73(4), pp. 293-297, 2001 |
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Peter Maass, M. Ende, D. Kayser, W. Osten, G. Teschke | Continuous Wavelet Methods in Signal Processing | Invited paper in, W. Osten (Ed.), 2001 |
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K.-D. Hungenberg, C.-C. Chen, F. Zhang, Michael Wulkow, G. Stubbe, U. Nieken | Design of Polymer Processes Using the Coupling of Commercial Simulation Packages Polymers Plus and PREDICI | DECHEMA Monographs, Vol.137, pp. 237-245, 2001 |
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Michael Wulkow, A. Gerstlauer, U. Nieken | Modeling of Crystallization Processes using PARSIVAL | Chem. Eng. Sci., Vol.56, pp. 2575-2588, 2001 |
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H. Horn, T. Neu, Michael Wulkow | Modelling the Structure and Function of Extracellular Polymeric Substances in Biofilms with new Numerical Techniques | Wat. Sci. Techn., 43(´6), pp. 121-127, 2001 |
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Johanna Nadobny, Waldemar Wlodarczyk, Peter Deuflhard, Gerhard Mönich, Peter Wust | Numerical and Experimental Investigations of Different Antenna Types for Deep Body Hyperthermia | Proc. 2001 URSI International Symposium on electromagnetic Theory, M. Stuchly, D. Shannon (Eds.), pp. 473-475, 2001 |
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Christof Schütte, Wilhelm Huisinga, Peter Deuflhard | Transfer operator approach to conformational dynamics in biomolecular systems | Ergodic theory, analysis, and efficient simulation of dynamical systems, Bernold Fiedler (Ed.), Berlin: Springer, pp. 191-223, 2001 (preprint available as ) |
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Frank Schmidt, T. Friese, David Yevick | Transparent Boundary Conditions for Split-Step Padé Approximations of the One-Way Helmholtz equation | J. Comp. Phys, Vol.170, pp. 696-719, 2001 |
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L. Teichmann, U. Liebelt, P. Reuschenbach, Michael Wulkow, H. Horn | Two dimensional simulation of mass transport and nitrification in the river Rhine | Eng. Life Sci., 1(4), pp. 145-149, 2001 |
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V. Lehmann, G. Teschke | Wavelet based methods for improved wind profiler signal processing | Annales Geophysicae, pp. 825-836, 2001 | BibTeX |